-
1
-
-
0032809077
-
Low-resolution density maps from atomic models: How stepping "back" can be a step "forward."
-
Belnap, D. M., Kumar, A., Folk, J. T., Smith, T. J., and Baker, T. S. (1999) Low-resolution density maps from atomic models: How stepping "back" can be a step "forward." J. Struct. Biol. 125, 166-175.
-
(1999)
J. Struct. Biol.
, vol.125
, pp. 166-175
-
-
Belnap, D.M.1
Kumar, A.2
Folk, J.T.3
Smith, T.J.4
Baker, T.S.5
-
2
-
-
84986512474
-
CHARMM: A program for macromolecular energy, minimization, and dynamics calculations
-
Brooks, B., Bruccoleri, R., Olafson, B., States, D., Swaminathan, S., and Karplus, M. (1983) CHARMM: A program for macromolecular energy, minimization, and dynamics calculations. J. Comp. Chem. 4, 187-217.
-
(1983)
J. Comp. Chem.
, vol.4
, pp. 187-217
-
-
Brooks, B.1
Bruccoleri, R.2
Olafson, B.3
States, D.4
Swaminathan, S.5
Karplus, M.6
-
3
-
-
0003769049
-
-
The Howard Hughes Medical Institute and Department of Molecular Biophysics and Biochemistry, Yale University
-
Brünger, A. (1992) X-PLOR, Version 3.1: A System for X-ray Crystallography and NMR. The Howard Hughes Medical Institute and Department of Molecular Biophysics and Biochemistry, Yale University.
-
(1992)
X-PLOR, Version 3.1: A System for X-ray Crystallography and NMR
-
-
Brünger, A.1
-
4
-
-
0034705330
-
Reconstruction of protein form with X-ray solution scattering and a genetic algorithm
-
Chacón, P., Díaz, J. F., Morán, F., and Andreu, J. M. (2000) Reconstruction of protein form with X-ray solution scattering and a genetic algorithm. J. Mol. Biol. 299, 1289-1302.
-
(2000)
J. Mol. Biol.
, vol.299
, pp. 1289-1302
-
-
Chacón, P.1
Díaz, J.F.2
Morán, F.3
Andreu, J.M.4
-
5
-
-
0011943096
-
ADF stabilizes an existing state of F-actin and can change the tilt of F-actin subunits
-
Galkin, V. E., Orlova, A., Lukoyanova, N., Wriggers, W., and Egelman, E. H. ADF stabilizes an existing state of F-actin and can change the tilt of F-actin subunits. J. Cell Biol. 153, 77-86.
-
J. Cell Biol.
, vol.153
, pp. 77-86
-
-
Galkin, V.E.1
Orlova, A.2
Lukoyanova, N.3
Wriggers, W.4
Egelman, E.H.5
-
6
-
-
0032530836
-
A database of macromolecular motions
-
Gerstein, M., and Krebs, W. (1998) A database of macromolecular motions. Nucleic Acids Res. 26, 4280-4290.
-
(1998)
Nucleic Acids Res.
, vol.26
, pp. 4280-4290
-
-
Gerstein, M.1
Krebs, W.2
-
7
-
-
0028335096
-
Structural mechanisms for domain movements in proteins
-
Gerstein, M., Lesk, A. M., and Chothia, C. (1994) Structural mechanisms for domain movements in proteins. Biochemistry 33, 6739-6749.
-
(1994)
Biochemistry
, vol.33
, pp. 6739-6749
-
-
Gerstein, M.1
Lesk, A.M.2
Chothia, C.3
-
8
-
-
0029878720
-
VMD - Visual molecular dynamics
-
Humphrey, W. F., Dalke, A., and Schulten, K. (1996) VMD - Visual molecular dynamics. J. Mol. Graphics 14, 33-38.
-
(1996)
J. Mol. Graphics
, vol.14
, pp. 33-38
-
-
Humphrey, W.F.1
Dalke, A.2
Schulten, K.3
-
9
-
-
0034695259
-
15 Å resolution model of the monomeric kinesin motor, KIF1A
-
Kikkawa, M., Okada, Y., and Hirokawa, N. (2000) 15 Å resolution model of the monomeric kinesin motor, KIF1A. Cell 100, 241-252.
-
(2000)
Cell
, vol.100
, pp. 241-252
-
-
Kikkawa, M.1
Okada, Y.2
Hirokawa, N.3
-
10
-
-
0029343811
-
The responsive workbench: A virtual work environment
-
Krüger, W., Bohn, C.-A., Fröhlich, B., Schüth, H., Strauss, W., and Wesche, G. (1995) The responsive workbench: A virtual work environment. IEEE Comp. 28, 42-48.
-
(1995)
IEEE Comp.
, vol.28
, pp. 42-48
-
-
Krüger, W.1
Bohn, C.-A.2
Fröhlich, B.3
Schüth, H.4
Strauss, W.5
Wesche, G.6
-
11
-
-
0034669110
-
Eukariotic chaperonin CCT stabilizes actin and tubulin folding intermediates in open quasi-native conformations
-
Llorca, O., Martin-Benito, J., Ritco-Vosonvici, M., Grantham, J., Hynes, G. M., Willison, K. R., Carrascosa, J. L., and Valpuesta, J. (2000) Eukariotic chaperonin CCT stabilizes actin and tubulin folding intermediates in open quasi-native conformations. EMBO J. 19, 5971-5979.
-
(2000)
EMBO J.
, vol.19
, pp. 5971-5979
-
-
Llorca, O.1
Martin-Benito, J.2
Ritco-Vosonvici, M.3
Grantham, J.4
Hynes, G.M.5
Willison, K.R.6
Carrascosa, J.L.7
Valpuesta, J.8
-
12
-
-
0034708341
-
Structure of the utrophin actin-binding domain bound to F-actin reveals binding by an induced fit mechanism
-
Moores, C. A., Keep, N. H., and Kendrick-Jones, J. (2000) Structure of the utrophin actin-binding domain bound to F-actin reveals binding by an induced fit mechanism. J. Mol. Biol. 297, 465-480.
-
(2000)
J. Mol. Biol.
, vol.297
, pp. 465-480
-
-
Moores, C.A.1
Keep, N.H.2
Kendrick-Jones, J.3
-
13
-
-
33646940952
-
Numerical integration of the Cartesian equations of motion of a system with constraints: Molecular dynamics of n-alkanes
-
Ryckaert, J.-P., Ciccotti, G., and Berendsen, H. J. C. (1977) Numerical integration of the Cartesian equations of motion of a system with constraints: Molecular dynamics of n-alkanes. J. Comp. Phys. 23, 327-341.
-
(1977)
J. Comp. Phys.
, vol.23
, pp. 327-341
-
-
Ryckaert, J.-P.1
Ciccotti, G.2
Berendsen, H.J.C.3
-
14
-
-
0343371824
-
Immersive VR for scientific visualization: A progress report
-
van Dam, A., Forsberg, A. S., Laidlaw, D. H., LaViola, J. J., and Simpson, R. M. (2000) Immersive VR for scientific visualization: A progress report. IEEE Comp. Graph. Appl. 20, 26-52.
-
(2000)
IEEE Comp. Graph. Appl.
, vol.20
, pp. 26-52
-
-
Van Dam, A.1
Forsberg, A.S.2
Laidlaw, D.H.3
LaViola, J.J.4
Simpson, R.M.5
-
15
-
-
84946450438
-
Algorithms for macromolecular dynamics and constraint dynamics
-
van Gunsteren, W. F., and Berendsen, H. J. C. (1977) Algorithms for macromolecular dynamics and constraint dynamics. Mol. Phys. 34, 1311-1327.
-
(1977)
Mol. Phys.
, vol.34
, pp. 1311-1327
-
-
Van Gunsteren, W.F.1
Berendsen, H.J.C.2
-
16
-
-
0039807844
-
Using Situs for the registration of protein structures with low-resolution bead models from X-ray solution scattering
-
in press
-
Wriggers, W., and Chacón, P. Using Situs for the registration of protein structures with low-resolution bead models from X-ray solution scattering. J. Appl. Cryst., in press.
-
J. Appl. Cryst.
-
-
Wriggers, W.1
Chacón, P.2
-
17
-
-
0033136019
-
Investigating a back door mechanism of actin phosphate release by steered molecular dynamics
-
Wriggers, W., and Schulten, K. (1999) Investigating a back door mechanism of actin phosphate release by steered molecular dynamics. Proteins Struct. Function Genet. 35, 262-273.
-
(1999)
Proteins Struct. Function Genet.
, vol.35
, pp. 262-273
-
-
Wriggers, W.1
Schulten, K.2
-
18
-
-
0032545184
-
Self-organizing neural networks bridge the biomolecular resolution gap
-
Wriggers, W., Milligan, R. A., Schulten, K., and McCammon, J. A. (1998) Self-organizing neural networks bridge the biomolecular resolution gap. J. Mol. Biol. 284, 1247-1254.
-
(1998)
J. Mol. Biol.
, vol.284
, pp. 1247-1254
-
-
Wriggers, W.1
Milligan, R.A.2
Schulten, K.3
McCammon, J.A.4
-
19
-
-
0032780181
-
Situs: A package for docking crystal structures into low-resolution maps from electron microscopy
-
Wriggers, W., Milligan, R. A., and McCammon, J. A. (1999) Situs: A package for docking crystal structures into low-resolution maps from electron microscopy. J. Struct. Biol. 125, 185-195.
-
(1999)
J. Struct. Biol.
, vol.125
, pp. 185-195
-
-
Wriggers, W.1
Milligan, R.A.2
McCammon, J.A.3
-
20
-
-
0033863336
-
Domain motions of EF-G bound to the 70S ribosome: Insights from a hand-shaking between multi-resolution structures
-
Wriggers, W., Agrawal, R. K., Drew, D. L., McCammon, J. A., and Frank, J. (2000) Domain motions of EF-G bound to the 70S ribosome: Insights from a hand-shaking between multi-resolution structures. Biophys. J. 79, 1670-1678.
-
(2000)
Biophys. J.
, vol.79
, pp. 1670-1678
-
-
Wriggers, W.1
Agrawal, R.K.2
Drew, D.L.3
McCammon, J.A.4
Frank, J.5
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