-
1
-
-
0027278557
-
Instability and decay of the primary structure of DNA
-
Lindahl T. Instability and decay of the primary structure of DNA. Nature 1993;362:709-715.
-
(1993)
Nature
, vol.362
, pp. 709-715
-
-
Lindahl, T.1
-
2
-
-
0031149139
-
How do DNA repair proteins locate damaged bases in the genome
-
Verdine GL, Bruner SD. How do DNA repair proteins locate damaged bases in the genome. Chem Biol 1997;4:329-334.
-
(1997)
Chem Biol
, vol.4
, pp. 329-334
-
-
Verdine, G.L.1
Bruner, S.D.2
-
3
-
-
0029806936
-
Preferential formation of benzo[a]pyrene adducts at lung cancer mutational hotspots in P53
-
Denissenko MF, Pao A, Tang M, Pfeifer GP. Preferential formation of benzo[a]pyrene adducts at lung cancer mutational hotspots in P53. Science 1996;274:430-432.
-
(1996)
Science
, vol.274
, pp. 430-432
-
-
Denissenko, M.F.1
Pao, A.2
Tang, M.3
Pfeifer, G.P.4
-
5
-
-
26944448202
-
Recognition of RNA polymerase II and transcription bubbles by XPG, CSB, and TFIIH: Insights for transcription-coupled repair and Cockayne Syndrome
-
Sarker AH, Tsutakawa SE, Kostek S, Ng C, Shin DS, Peris M, Campeau E, Tainer JA, Nogales E, Cooper PK. Recognition of RNA polymerase II and transcription bubbles by XPG, CSB, and TFIIH: Insights for transcription-coupled repair and Cockayne Syndrome. Mol Cell 2005;20:187-198.
-
(2005)
Mol Cell
, vol.20
, pp. 187-198
-
-
Sarker, A.H.1
Tsutakawa, S.E.2
Kostek, S.3
Ng, C.4
Shin, D.S.5
Peris, M.6
Campeau, E.7
Tainer, J.A.8
Nogales, E.9
Cooper, P.K.10
-
6
-
-
55749095542
-
The clinical characteristics of Werner syndrome: Molecular and biochemical diagnosis
-
Muftuoglu M, Oshima J, von Kobbe C, Cheng WH, Leistritz DF, Bohr VA. The clinical characteristics of Werner syndrome: Molecular and biochemical diagnosis. Hum Genet 2008;124:369-377.
-
(2008)
Hum Genet
, vol.124
, pp. 369-377
-
-
Muftuoglu, M.1
Oshima, J.2
von Kobbe, C.3
Cheng, W.H.4
Leistritz, D.F.5
Bohr, V.A.6
-
7
-
-
33750453046
-
Smoking and lung cancer-a new role for an old toxicant?
-
Hecht SS. Smoking and lung cancer-a new role for an old toxicant? Proc Natl Acad Sci USA 2006;103:15725-15726.
-
(2006)
Proc Natl Acad Sci USA
, vol.103
, pp. 15725-15726
-
-
Hecht, S.S.1
-
8
-
-
33644626078
-
NMR Structures of damaged DNA
-
Lukin M, de Los Santos C. NMR Structures of damaged DNA. Chem Rev 2006;106:607-686.
-
(2006)
Chem Rev
, vol.106
, pp. 607-686
-
-
Lukin, M.1
de Los Santos, C.2
-
9
-
-
67649933847
-
Chemistry and biology of DNA containing 1,N2-deoxyguanosine adducts of the a,b-unsaturated aldehydes acrolein, crotonaldehyde, and 4-hydroxynonenal
-
Minko IG, Kozekov ID, Harris TM, Rizzo CJ, Lloyd RS, Stone MP. Chemistry and biology of DNA containing 1, N2-deoxyguanosine adducts of the a, b-unsaturated aldehydes acrolein, crotonaldehyde, and 4-hydroxynonenal. Chem Res Toxicol 2006;22:759-778.
-
(2006)
Chem Res Toxicol
, vol.22
, pp. 759-778
-
-
Minko, I.G.1
Kozekov, I.D.2
Harris, T.M.3
Rizzo, C.J.4
Lloyd, R.S.5
Stone, M.P.6
-
10
-
-
0030979263
-
DNA glycosylases
-
Cunningham RP. DNA glycosylases. DNA Repair 1997;383:189-196.
-
(1997)
DNA Repair
, vol.383
, pp. 189-196
-
-
Cunningham, R.P.1
-
11
-
-
33750083332
-
Mechanisms in eukaryotic mismatch repair
-
Modrich P. Mechanisms in eukaryotic mismatch repair. J Biol Chem 2006;281:30305-30309.
-
(2006)
J Biol Chem
, vol.281
, pp. 30305-30309
-
-
Modrich, P.1
-
13
-
-
0034734377
-
Abasic site recognition by two apurinic/apyrimdinic endonuclease famiies in DNA base excision repair: The 3' ends justify the means
-
Mol CD, Hosfield DJ, Tainer JA. Abasic site recognition by two apurinic/apyrimdinic endonuclease famiies in DNA base excision repair: The 3' ends justify the means. Mutat Res 2000;460:211-229.
-
(2000)
Mutat Res
, vol.460
, pp. 211-229
-
-
Mol, C.D.1
Hosfield, D.J.2
Tainer, J.A.3
-
14
-
-
0033529716
-
Structure of the DNA repair enzyme endonuclease IV and its DNA complex double-nucleotide flipping at abasic sites and three-metal-ion catal
-
Hosfield DJ, Guan Y, Haas BJ, Cunningham RP, Tainer JA. Structure of the DNA repair enzyme endonuclease IV and its DNA complex double-nucleotide flipping at abasic sites and three-metal-ion catal. Cell 1999;98:397-408.
-
(1999)
Cell
, vol.98
, pp. 397-408
-
-
Hosfield, D.J.1
Guan, Y.2
Haas, B.J.3
Cunningham, R.P.4
Tainer, J.A.5
-
15
-
-
0034641947
-
The crystal structure of DNA mismatch repair protein MutS binding to a G center dot T mismatch
-
Lamers MH, Perrakis A, Enzlin JH, Winterwerp HHK, De Wind N, Sixma TK. The crystal structure of DNA mismatch repair protein MutS binding to a G center dot T mismatch. Nature 2000;407;711-717.
-
(2000)
Nature
, vol.407
, pp. 711-717
-
-
Lamers, M.H.1
Perrakis, A.2
Enzlin, J.H.3
Winterwerp, H.H.K.4
De Wind, N.5
Sixma, T.K.6
-
16
-
-
0345138990
-
Structures of Escherichia coli DNA mismatch repair enzyme MutS in complex with different mismatches: A common recognition mode for diverse substrates
-
Natrajan G, Lamers MH, Enzlin JH, Winterwerp HHK, Perrakis A, Sixma TK. Structures of Escherichia coli DNA mismatch repair enzyme MutS in complex with different mismatches: A common recognition mode for diverse substrates. Nucleic Acids Res 2003;31:4814-4821.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 4814-4821
-
-
Natrajan, G.1
Lamers, M.H.2
Enzlin, J.H.3
Winterwerp, H.H.K.4
Perrakis, A.5
Sixma, T.K.6
-
17
-
-
34248572591
-
Structure of the human MutS alpha DNA lesion recognition complex
-
Warren JJ, Pohlhaus TJ, Changela A, Iyer RR, Modrich PL, Beese LS. Structure of the human MutS alpha DNA lesion recognition complex. Mol Cell 2007;26:579-592.
-
(2007)
Mol Cell
, vol.26
, pp. 579-592
-
-
Warren, J.J.1
Pohlhaus, T.J.2
Changela, A.3
Iyer, R.R.4
Modrich, P.L.5
Beese, L.S.6
-
18
-
-
11144357255
-
Cellular machineries for chromosomal DNA repair
-
Peterson CL, Côté JC. Cellular machineries for chromosomal DNA repair. Genes Dev 2004;18:602-616
-
(2004)
Genes Dev
, vol.18
, pp. 602-616
-
-
Peterson, C.L.1
Côté, J.C.2
-
19
-
-
30344471856
-
Chromatin and DNA repair: The benefits of relaxation
-
Downey D, Durocher D. Chromatin and DNA repair: The benefits of relaxation. Nat Cell Biol 2006;8:9-11.
-
(2006)
Nat Cell Biol
, vol.8
, pp. 9-11
-
-
Downey, D.1
Durocher, D.2
-
20
-
-
33847076248
-
Chromatin challenges during DNA replication and repair
-
Groth A, Rocha W, Verreault A, Almouzni G. Chromatin challenges during DNA replication and repair. Cell 2007;128:721-733.
-
(2007)
Cell
, vol.128
, pp. 721-733
-
-
Groth, A.1
Rocha, W.2
Verreault, A.3
Almouzni, G.4
-
21
-
-
0034707047
-
The DNA damage response: Putting checkpoints in perspective
-
Zhou BB, Elledge SJ. The DNA damage response: Putting checkpoints in perspective. Nature 2000;408:433-439.
-
(2000)
Nature
, vol.408
, pp. 433-439
-
-
Zhou, B.B.1
Elledge, S.J.2
-
22
-
-
67349209966
-
DNA damage response: Change of guard at the check point
-
Cesari F. DNA damage response: Change of guard at the check point. Nat Rev Mol Cell Biol 2009;10;305.
-
(2009)
Nat Rev Mol Cell Biol
, vol.10
, pp. 305
-
-
Cesari, F.1
-
23
-
-
34247599335
-
A unified view of base excision repair: Lesion-dependent protein complexes regulated by post-translational modification
-
Almeida KH, Sobol RW. A unified view of base excision repair: Lesion-dependent protein complexes regulated by post-translational modification. DNA Repair 2007;6:695-711.
-
(2007)
DNA Repair
, vol.6
, pp. 695-711
-
-
Almeida, K.H.1
Sobol, R.W.2
-
24
-
-
38049112778
-
Early steps in the DNA base excision/single-strand interruption repair pathway in mammalian cells
-
Hedge ML, Hazra TK, Mitra S. Early steps in the DNA base excision/single-strand interruption repair pathway in mammalian cells. Cell Res 2008;18:27-47.
-
(2008)
Cell Res
, vol.18
, pp. 27-47
-
-
Hedge, M.L.1
Hazra, T.K.2
Mitra, S.3
-
25
-
-
85015066476
-
DNA damage and repair
-
Friedberg EC. DNA damage and repair. Nature 2003;421:436-440.
-
(2003)
Nature
, vol.421
, pp. 436-440
-
-
Friedberg, E.C.1
-
26
-
-
0004228157
-
-
Washington, DC: American Society of Microbiology Press
-
Friedberg EC, Walker GC, Siede W, Wood RD, Schultz RA, Ellenberger T. DNA repair and mutagenesis. Washington, DC: American Society of Microbiology Press; 2005.
-
(2005)
DNA repair and mutagenesis
-
-
Friedberg, E.C.1
Walker, G.C.2
Siede, W.3
Wood, R.D.4
Schultz, R.A.5
Ellenberger, T.6
-
28
-
-
0029784320
-
Biochemistry and genetics of eukaryotic mismatch repair
-
Kolodner R. Biochemistry and genetics of eukaryotic mismatch repair. Genes Dev 1996;10:1433-1442.
-
(1996)
Genes Dev
, vol.10
, pp. 1433-1442
-
-
Kolodner, R.1
-
29
-
-
0035289717
-
Chromosomal instability and the DNA double stranded break connection
-
Van Gent DC, Hoeijmakers JH, Kanaar R. Chromosomal instability and the DNA double stranded break connection. Nat Rev Genet 2001;2:196-206.
-
(2001)
Nat Rev Genet
, vol.2
, pp. 196-206
-
-
Van Gent, D.C.1
Hoeijmakers, J.H.2
Kanaar, R.3
-
30
-
-
0031426032
-
Nitrosated peptides and polyamines as endogenous mutagens in O6-alkylguanine-DNA alkyltransferase deficient cells
-
Sedgwick B. Nitrosated peptides and polyamines as endogenous mutagens in O6-alkylguanine-DNA alkyltransferase deficient cells. Carcinogenesis 1997;18:1561-1567.
-
(1997)
Carcinogenesis
, vol.18
, pp. 1561-1567
-
-
Sedgwick, B.1
-
31
-
-
0004228157
-
-
2nd ed. Washington, DC: American Society of Microbiology
-
Friedberg EC, Walker GC, Siede W, Wood RD, Schultz RA, Ellenberger T. DNA repair and mutagenesis, 2nd ed. Washington, DC: American Society of Microbiology; 2006.
-
(2006)
DNA repair and mutagenesis
-
-
Friedberg, E.C.1
Walker, G.C.2
Siede, W.3
Wood, R.D.4
Schultz, R.A.5
Ellenberger, T.6
-
32
-
-
0025033354
-
Structure and function of the (A)BC excinuclease of Escherichia coli
-
Selby CP, Sancar A. Structure and function of the (A)BC excinuclease of Escherichia coli., Mutat Res 1990;236:203-211.
-
(1990)
Mutat Res
, vol.236
, pp. 203-211
-
-
Selby, C.P.1
Sancar, A.2
-
33
-
-
0025854831
-
NMR studies of a DNA containing 8-hydroxydeoxyguanosine
-
Oda Y, Uesugi S, Ikehara M, Nishimura S, Kawase Y, Ishikawa H, Inoue H, Ohtsuka E. NMR studies of a DNA containing 8-hydroxydeoxyguanosine. Nucleic Acids Res 1991;19:1407-1412.
-
(1991)
Nucleic Acids Res
, vol.19
, pp. 1407-1412
-
-
Oda, Y.1
Uesugi, S.2
Ikehara, M.3
Nishimura, S.4
Kawase, Y.5
Ishikawa, H.6
Inoue, H.7
Ohtsuka, E.8
-
34
-
-
0344586043
-
Mutagenicity, toxicity and repair of DNA base damage induced by oxidation
-
Bjelland S, Seeberg E. Mutagenicity, toxicity and repair of DNA base damage induced by oxidation. Mutat Res 2003;531:37-80.
-
(2003)
Mutat Res
, vol.531
, pp. 37-80
-
-
Bjelland, S.1
Seeberg, E.2
-
35
-
-
0029886786
-
Cancer risk and oxidative DNA damage in man
-
Loft S, Poulsen HE. Cancer risk and oxidative DNA damage in man. J Mol Med 1996:74:297-312.
-
(1996)
J Mol Med
, vol.74
, pp. 297-312
-
-
Loft, S.1
Poulsen, H.E.2
-
36
-
-
0030839865
-
Oxidative decay of DNA
-
Beckman KB, Ames BN. Oxidative decay of DNA. J Biol Chem 1997;272:19633-19636.
-
(1997)
J Biol Chem
, vol.272
, pp. 19633-19636
-
-
Beckman, K.B.1
Ames, B.N.2
-
37
-
-
0036935437
-
Maintenance of mitochondrial DNA integrity: Repair and degradation
-
Kang D, Hamasaki N. Maintenance of mitochondrial DNA integrity: Repair and degradation. Curr Genet 2002;41:311-322.
-
(2002)
Curr Genet
, vol.41
, pp. 311-322
-
-
Kang, D.1
Hamasaki, N.2
-
38
-
-
67349125744
-
Novel DNA mismatch-repair activity involving YB-1 in human mitochondria
-
de Souza-Pinto NC, Mason PA, Hashiguchi K, Weissman L, Tian J, Guah D, Lebel M, Stevnsner TV, Rasmussen LJ, Bohr VA. Novel DNA mismatch-repair activity involving YB-1 in human mitochondria. DNA Repair 2009;8:704-719.
-
(2009)
DNA Repair
, vol.8
, pp. 704-719
-
-
de Souza-Pinto, N.C.1
Mason, P.A.2
Hashiguchi, K.3
Weissman, L.4
Tian, J.5
Guah, D.6
Lebel, M.7
Stevnsner, T.V.8
Rasmussen, L.J.9
Bohr, V.A.10
-
39
-
-
0036570012
-
Repair of oxidative DNA damage in nuclear and mitochondrial DNA, and some changes with aging in mammalian cells
-
Bohr VA. Repair of oxidative DNA damage in nuclear and mitochondrial DNA, and some changes with aging in mammalian cells. Free Radic Biol Med 2002;32:804-812.
-
(2002)
Free Radic Biol Med
, vol.32
, pp. 804-812
-
-
Bohr, V.A.1
-
40
-
-
0037154982
-
A unified theory of gene expression
-
Orphanides G, Reinberg D. A unified theory of gene expression. Cell 2002;108:439-443
-
(2002)
Cell
, vol.108
, pp. 439-443
-
-
Orphanides, G.1
Reinberg, D.2
-
41
-
-
72149111977
-
Nucleosome Remodeling by hMSH2-hMSH6
-
Javaid S, Manohar M, Punja N, Mooney A, Ottesen J, Poirier M, Fishel R. Nucleosome Remodeling by hMSH2-hMSH6. Mol Cell 2009;36:1086-1094.
-
(2009)
Mol Cell
, vol.36
, pp. 1086-1094
-
-
Javaid, S.1
Manohar, M.2
Punja, N.3
Mooney, A.4
Ottesen, J.5
Poirier, M.6
Fishel, R.7
-
42
-
-
0035542974
-
Methyl CpG-binding proteins and transcriptional repression
-
Wade PA. Methyl CpG-binding proteins and transcriptional repression. Bioessays 2001;23:1131-1137.
-
(2001)
Bioessays
, vol.23
, pp. 1131-1137
-
-
Wade, P.A.1
-
43
-
-
0029992687
-
Preferential targeting of oxidative base damage to internucleosomal DNA
-
Enright H, Miller WJ, Hays R, Floyd RA, Hebbel RP. Preferential targeting of oxidative base damage to internucleosomal DNA. Carcinogenesis 1996;17:1175-1177.
-
(1996)
Carcinogenesis
, vol.17
, pp. 1175-1177
-
-
Enright, H.1
Miller, W.J.2
Hays, R.3
Floyd, R.A.4
Hebbel, R.P.5
-
44
-
-
0036847501
-
DNA base excision repair of uracil residues in reconstituted nucleosome core particles
-
Nilsen H, Lindahl T, Verreault A. DNA base excision repair of uracil residues in reconstituted nucleosome core particles. EMBO J 2002;12:5943-5952.
-
(2002)
EMBO J
, vol.12
, pp. 5943-5952
-
-
Nilsen, H.1
Lindahl, T.2
Verreault, A.3
-
46
-
-
0242300612
-
Sun YE DNA methylation-related chromatin remodeling in activity-dependent BDNF gene regulation
-
Martinowich K, Hattori D, Wu H, Fouse S, He F, Hu Y, Fan G. Sun YE DNA methylation-related chromatin remodeling in activity-dependent BDNF gene regulation. Science 2003;302:890-893.
-
(2003)
Science
, vol.302
, pp. 890-893
-
-
Martinowich, K.1
Hattori, D.2
Wu, H.3
Fouse, S.4
He, F.5
Hu, Y.6
Fan, G.7
-
47
-
-
0027383758
-
The purification of a mismatch-specific thymine-DNA glycosylase from HeLa cells
-
Neddermann P, Jiricny J. The purification of a mismatch-specific thymine-DNA glycosylase from HeLa cells. J Biol Chem 1993;268:21218-21224.
-
(1993)
J Biol Chem
, vol.268
, pp. 21218-21224
-
-
Neddermann, P.1
Jiricny, J.2
-
48
-
-
0037424520
-
The main role of human thymine-DNA glycosylase is removal of thymine produced by deamination of 5-methylcytosine and not removal of ethenocytosine
-
Abu M, Waters TR. The main role of human thymine-DNA glycosylase is removal of thymine produced by deamination of 5-methylcytosine and not removal of ethenocytosine. J Biol Chem 2008;278:8739-8744.
-
(2008)
J Biol Chem
, vol.278
, pp. 8739-8744
-
-
Abu, M.1
Waters, T.R.2
-
49
-
-
0037160120
-
Nucleosome Structure and repair of N-Methylpurines in the GAL1-10 genes of Saccaromyces cerevisia
-
Li S, Smerdon MJ. Nucleosome Structure and repair of N-Methylpurines in the GAL1-10 genes of Saccaromyces cerevisia. J Biol Chem 2002;277:44651-44659.
-
(2002)
J Biol Chem
, vol.277
, pp. 44651-44659
-
-
Li, S.1
Smerdon, M.J.2
-
50
-
-
77952564842
-
Oxidative stress triggers the preferential assembly of base excision repair complexes on open chromatin regions
-
Amouroux R, Campalans A, Epe B, Radicella JP. Oxidative stress triggers the preferential assembly of base excision repair complexes on open chromatin regions. Nucleic Acids Res 2010;38:2878-2890.
-
(2010)
Nucleic Acids Res
, vol.38
, pp. 2878-2890
-
-
Amouroux, R.1
Campalans, A.2
Epe, B.3
Radicella, J.P.4
-
51
-
-
77949528928
-
Rotational dynamics of DNA on the nucleosome surface markedly impact accessibility to a DNA repair enzyme
-
Hinz JM, Rodriguez Y, Smerdon MJ. Rotational dynamics of DNA on the nucleosome surface markedly impact accessibility to a DNA repair enzyme. Proc Natl Acad Sci USA 2010;107:4646-4651.
-
(2010)
Proc Natl Acad Sci USA
, vol.107
, pp. 4646-4651
-
-
Hinz, J.M.1
Rodriguez, Y.2
Smerdon, M.J.3
-
52
-
-
0025340988
-
DNA repair within nucleosome cores of UV-irradiated human cells
-
Jensen KA, Smerdon MJ. DNA repair within nucleosome cores of UV-irradiated human cells. Biochemistry 1990;29:4773-4782.
-
(1990)
Biochemistry
, vol.29
, pp. 4773-4782
-
-
Jensen, K.A.1
Smerdon, M.J.2
-
53
-
-
0030798002
-
Nucleosome structure and positioning modulate nucleotide excision repair in the non-transcribed strand of an active gene
-
Wellinger RE, Fritz Thoma F. Nucleosome structure and positioning modulate nucleotide excision repair in the non-transcribed strand of an active gene. EMBO J 1997;16:5046-5056.
-
(1997)
EMBO J
, vol.16
, pp. 5046-5056
-
-
Wellinger, R.E.1
Fritz Thoma, F.2
-
54
-
-
65649099528
-
Lux ex tenebris: Nucleotide resolution DNA repair and nucleosome mapping
-
Teng Y, Yu S, Reed SH, Waters R. Lux ex tenebris: Nucleotide resolution DNA repair and nucleosome mapping. Methods 2009;48:23-34.
-
(2009)
Methods
, vol.48
, pp. 23-34
-
-
Teng, Y.1
Yu, S.2
Reed, S.H.3
Waters, R.4
-
55
-
-
0036094122
-
Nucleotide excision repair and chromatin remodeling
-
Ura K, Hayes JJ. Nucleotide excision repair and chromatin remodeling. Eur J Biochem 2006;269:2288-2293.
-
(2006)
Eur J Biochem
, vol.269
, pp. 2288-2293
-
-
Ura, K.1
Hayes, J.J.2
-
56
-
-
33749520485
-
Rad4-Rad23 interaction with SWI/SNF links ATP-dependent chromatin remodeling with nucleotide excision repair
-
Gong F, Fahy D, Smerdon MJ. Rad4-Rad23 interaction with SWI/SNF links ATP-dependent chromatin remodeling with nucleotide excision repair. Nat Struct Mol Biol 2006;13:902-907.
-
(2006)
Nat Struct Mol Biol
, vol.13
, pp. 902-907
-
-
Gong, F.1
Fahy, D.2
Smerdon, M.J.3
-
58
-
-
1842689672
-
Dissecting transcription coupled and global genomic repair in the chromatin of yeast GAL1-10 genes
-
Li S, Smerdon MJ. Dissecting transcription coupled and global genomic repair in the chromatin of yeast GAL1-10 genes. J Biol Chem 2004;279:14418-14426.
-
(2004)
J Biol Chem
, vol.279
, pp. 14418-14426
-
-
Li, S.1
Smerdon, M.J.2
-
59
-
-
38049125557
-
Mechanisms and functions of DNA mismatch repair
-
Li GM. Mechanisms and functions of DNA mismatch repair. Cell Res 2008;18:85-98.
-
(2008)
Cell Res
, vol.18
, pp. 85-98
-
-
Li, G.M.1
-
60
-
-
0031456973
-
The human mismatch recognition complex hMSH2-hMSH6 functions as a novel molecular switch
-
Gradia S, Acharia S Fishel R. The human mismatch recognition complex hMSH2-hMSH6 functions as a novel molecular switch. Cell 1997:91;995-1005.
-
(1997)
Cell
, vol.91
, pp. 995-1005
-
-
Gradia, S.1
Acharia S Fishel, R.2
-
61
-
-
34547882768
-
Protein roadblocks and helix discontinuities are barriers to the initiation of mismatch repair
-
Pluciennik A, Modrich P. Protein roadblocks and helix discontinuities are barriers to the initiation of mismatch repair. Proc Nat Acad Sci USA 2007;104:12709-12713.
-
(2007)
Proc Nat Acad Sci USA
, vol.104
, pp. 12709-12713
-
-
Pluciennik, A.1
Modrich, P.2
-
62
-
-
70450237030
-
Evidence that nucleosomes inhibit mismatch repair in eukaryotic cells
-
Li F, Tian L, Gu L, Li GM. Evidence that nucleosomes inhibit mismatch repair in eukaryotic cells. J Biol Chem 2009;284:33056-33061.
-
(2009)
J Biol Chem
, vol.284
, pp. 33056-33061
-
-
Li, F.1
Tian, L.2
Gu, L.3
Li, G.M.4
-
63
-
-
7444266619
-
Human DNA glycosylases involved in the repair of oxidatively damaged DNA
-
Ide H, Kotera M. Human DNA glycosylases involved in the repair of oxidatively damaged DNA. Biol Pharm Bull 2004;27:480-485.
-
(2004)
Biol Pharm Bull
, vol.27
, pp. 480-485
-
-
Ide, H.1
Kotera, M.2
-
64
-
-
0028857681
-
The base excision repair pathway
-
Seeburg E, Eide L, Bjørås M. The base excision repair pathway. TIBS 1995;20:391-397.
-
(1995)
TIBS
, vol.20
, pp. 391-397
-
-
Seeburg, E.1
Eide, L.2
Bjørås, M.3
-
67
-
-
33847613569
-
Oxidative DNA damage repair in mammalian cells: A new perspective
-
Hazra TK, Das A, Das S, Choudhury S, Kow YW, Roy R. Oxidative DNA damage repair in mammalian cells: A new perspective. DNA Repair 2007;6:470-480.
-
(2007)
DNA Repair
, vol.6
, pp. 470-480
-
-
Hazra, T.K.1
Das, A.2
Das, S.3
Choudhury, S.4
Kow, Y.W.5
Roy, R.6
-
68
-
-
34948854919
-
Excision of 5-halogenated uracils by human thymine DNA glycosylase
-
Morgan MT, Bennett MT, Drohat AC. Excision of 5-halogenated uracils by human thymine DNA glycosylase. J Biol Chem 2007;282:27578-27586.
-
(2007)
J Biol Chem
, vol.282
, pp. 27578-27586
-
-
Morgan, M.T.1
Bennett, M.T.2
Drohat, A.C.3
-
69
-
-
59449097875
-
Pharmacophore guided discovery of small-molecule human apurinic/apyrimidinic endonuclease 1 inhibitors
-
Zawahir Z, Dayam R, Deng J, Pereira C, Neamati N. Pharmacophore guided discovery of small-molecule human apurinic/apyrimidinic endonuclease 1 inhibitors. J Med Chem 2009;52:20-32.
-
(2009)
J Med Chem
, vol.52
, pp. 20-32
-
-
Zawahir, Z.1
Dayam, R.2
Deng, J.3
Pereira, C.4
Neamati, N.5
-
70
-
-
11844253296
-
Ape1 abasic endonuclease activity is regulated by magnesium and potassium concentrations and is robust on alternative DNA structures
-
Wilson DM. Ape1 abasic endonuclease activity is regulated by magnesium and potassium concentrations and is robust on alternative DNA structures. J Mol Biol 2005;345:1003-1014.
-
(2005)
J Mol Biol
, vol.345
, pp. 1003-1014
-
-
Wilson, D.M.1
-
71
-
-
73549091674
-
Intrusion of a DNA repair protein in the RNome world: Is this the beginning of a new era?
-
Tell G, Willson DM, Lee CH. Intrusion of a DNA repair protein in the RNome world: Is this the beginning of a new era? Mol Cell Biol 2010;30:366-371.
-
(2010)
Mol Cell Biol
, vol.30
, pp. 366-371
-
-
Tell, G.1
Willson, D.M.2
Lee, C.H.3
-
72
-
-
73549114235
-
Endoribonuclease activity of human apurinic/apyrimidinic endonuclease 1 revealed by a real-time fluoreometric assay
-
Kim-Eun S, Gorrell A, Rader SD, Lee CH. Endoribonuclease activity of human apurinic/apyrimidinic endonuclease 1 revealed by a real-time fluoreometric assay. Anal Biochem 2010;398:69-75.
-
(2010)
Anal Biochem
, vol.398
, pp. 69-75
-
-
Kim-Eun, S.1
Gorrell, A.2
Rader, S.D.3
Lee, C.H.4
-
73
-
-
67651149733
-
Identification of apurinic/apyrimidinic endonuclease 1 (APE1) as the endoribonuclease that cleaves c-myc mRNA
-
Barnes T, Kim WC, Mantha AK, Kim SE, Izumi T, Mitra S, Lee CH. Identification of apurinic/apyrimidinic endonuclease 1 (APE1) as the endoribonuclease that cleaves c-myc mRNA. Nucleic Acids Res 2009;37:3946-3958.
-
(2009)
Nucleic Acids Res
, vol.37
, pp. 3946-3958
-
-
Barnes, T.1
Kim, W.C.2
Mantha, A.K.3
Kim, S.E.4
Izumi, T.5
Mitra, S.6
Lee, C.H.7
-
74
-
-
0348140585
-
Abasic sites in DNA: Repair and biological consequences in Saccharomyces cervisiae
-
Boiteux S, Guillet M. Abasic sites in DNA: Repair and biological consequences in Saccharomyces cervisiae. DNA Repair 2004;3:1-12.
-
(2004)
DNA Repair
, vol.3
, pp. 1-12
-
-
Boiteux, S.1
Guillet, M.2
-
76
-
-
34548276529
-
The DNA base excision repair protein Ape1/Ref-1 as a therapeutic and chemopreventive target
-
Fishel ML, Kelley MR. The DNA base excision repair protein Ape1/Ref-1 as a therapeutic and chemopreventive target. Mol Aspects Med 2007;28:375-395.
-
(2007)
Mol Aspects Med
, vol.28
, pp. 375-395
-
-
Fishel, M.L.1
Kelley, M.R.2
-
77
-
-
0028181135
-
Alpha-deoxyadenosine, a major anoxic radiolysis product of adenine in DNA, is a substrate for Escherichia coli endonuclease IV
-
Ide H, Tedzuka K, Shimizu H, Kimura Y, Purmal AA, Wallace SS, Kow Alpha-deoxyadenosine, a major anoxic radiolysis product of adenine in DNA, is a substrate for Escherichia coli endonuclease IV. Biochemistry 1994;33:7842-7847.
-
(1994)
Biochemistry
, vol.33
, pp. 7842-7847
-
-
Ide, H.1
Tedzuka, K.2
Shimizu, H.3
Kimura, Y.4
Purmal, A.A.5
Wallace, S.S.6
Kow7
-
78
-
-
0037049975
-
Alternative nucleotide incision repair pathway for oxidative DNA damage
-
Ischenko AA, Saparbaev MK. Alternative nucleotide incision repair pathway for oxidative DNA damage. Nature 2002;415:183-187.
-
(2002)
Nature
, vol.415
, pp. 183-187
-
-
Ischenko, A.A.1
Saparbaev, M.K.2
-
79
-
-
33644546374
-
Uncoupling of the base excision and nucleotide incision repair pathways reveals their respective biological roles
-
Ishchenko A, Deprez E, Maksimenko A, Brochon JC, Tauc P, Saparbaev M. Uncoupling of the base excision and nucleotide incision repair pathways reveals their respective biological roles. Proc Natl Acad Sci USA 2006;103:2564-2569.
-
(2006)
Proc Natl Acad Sci USA
, vol.103
, pp. 2564-2569
-
-
Ishchenko, A.1
Deprez, E.2
Maksimenko, A.3
Brochon, J.C.4
Tauc, P.5
Saparbaev, M.6
-
80
-
-
0034708226
-
Structural basis for recognition and repair of the endogenous mutagen 8-oxoguanine in DNA
-
Bruner SD, Norman DPG, Verdine GL. Structural basis for recognition and repair of the endogenous mutagen 8-oxoguanine in DNA. Nature 2000;403:859-866.
-
(2000)
Nature
, vol.403
, pp. 859-866
-
-
Bruner, S.D.1
Norman, D.P.G.2
Verdine, G.L.3
-
81
-
-
0036290411
-
Reciprocal "flipping" underlies substrate recognition and catalytic activation by the human 8-oxo-guanine DNA glycosylase
-
Bjørås M, Seeberg E, Luna L, Pearl LH, Barrett TE. Reciprocal "flipping" underlies substrate recognition and catalytic activation by the human 8-oxo-guanine DNA glycosylase. J Mol Biol 2002;317:171-177.
-
(2002)
J Mol Biol
, vol.317
, pp. 171-177
-
-
Bjørås, M.1
Seeberg, E.2
Luna, L.3
Pearl, L.H.4
Barrett, T.E.5
-
82
-
-
33845407758
-
Different DNA repair strategies to combat the threat from 8-oxoguanine
-
Russo MT, De Luca G, Degan P, Bignami M. Different DNA repair strategies to combat the threat from 8-oxoguanine. Mutat Res 2007;614:69-76.
-
(2007)
Mutat Res
, vol.614
, pp. 69-76
-
-
Russo, M.T.1
De Luca, G.2
Degan, P.3
Bignami, M.4
-
83
-
-
1342304229
-
Structural basis for removal of adenine mispaired with 8-oxoguanine by MutY adenine DNA glycosylase
-
Fromme JC, Banerjee SJ, Huang SJ, Verdine GL. Structural basis for removal of adenine mispaired with 8-oxoguanine by MutY adenine DNA glycosylase. Nature 2004;427:652-656.
-
(2004)
Nature
, vol.427
, pp. 652-656
-
-
Fromme, J.C.1
Banerjee, S.J.2
Huang, S.J.3
Verdine, G.L.4
-
84
-
-
77249173864
-
The C-terminal lysine of Ogg2 DNA glycosylases is a major molecular determinant for guanine/8-oxoguanine distinction
-
Faucher F, Wallace SS, Doublié S. The C-terminal lysine of Ogg2 DNA glycosylases is a major molecular determinant for guanine/8-oxoguanine distinction. J Mol Biol 2010;397:46-56.
-
(2010)
J Mol Biol
, vol.397
, pp. 46-56
-
-
Faucher, F.1
Wallace, S.S.2
Doublié, S.3
-
85
-
-
0037040962
-
Activation of human MutS homologs by 8-oxo-guanine DNA damage
-
Mazurek A, Berardini M, Fishel R. Activation of human MutS homologs by 8-oxo-guanine DNA damage. J Biol Chem 2002;277:8260-8266.
-
(2002)
J Biol Chem
, vol.277
, pp. 8260-8266
-
-
Mazurek, A.1
Berardini, M.2
Fishel, R.3
-
86
-
-
47649118611
-
Clostridium acetobutylicum 8-oxoguanine DNA glycosylase (Ogg) differs from eukaryotic Oggs with respect to oppsite base discrimination
-
Robey-Bond SM, Barrantes-Reynolds R, Bond JP, Wallace SS, Bandaru V. Clostridium acetobutylicum 8-oxoguanine DNA glycosylase (Ogg) differs from eukaryotic Oggs with respect to oppsite base discrimination. Biochemistry 2008;47:7626-7636.
-
(2008)
Biochemistry
, vol.47
, pp. 7626-7636
-
-
Robey-Bond, S.M.1
Barrantes-Reynolds, R.2
Bond, J.P.3
Wallace, S.S.4
Bandaru, V.5
-
87
-
-
70349847564
-
Structural basis for the lack of opposite base specificity of Clostridium acetobutylicum 8-oxoguanine DNA glycosylase
-
Faucher F, Wallace SS, Doublié S. Structural basis for the lack of opposite base specificity of Clostridium acetobutylicum 8-oxoguanine DNA glycosylase. DNA Repair 2009;8:1283-1289.
-
(2009)
DNA Repair
, vol.8
, pp. 1283-1289
-
-
Faucher, F.1
Wallace, S.S.2
Doublié, S.3
-
88
-
-
0025891866
-
NMR structural studies of ionizing radiation adduct 7-hyrdo-8-oxodeoxyguanosine (8-oxo-7H-dG) opposite deoxyadenosine in a DNA duplex. 8-Oxo-7H-dG(syn)•dA(anti) alignment at lesion site
-
Kouchakdjian M, Bodepudi V, Shibutani S, Eisenberg M, Johnson F, Grollman AP, Patel DJ. NMR structural studies of ionizing radiation adduct 7-hyrdo-8-oxodeoxyguanosine (8-oxo-7H-dG) opposite deoxyadenosine in a DNA duplex. 8-Oxo-7H-dG(syn)•dA(anti) alignment at lesion site. Biochemistry 1991;30:1403-1412.
-
(1991)
Biochemistry
, vol.30
, pp. 1403-1412
-
-
Kouchakdjian, M.1
Bodepudi, V.2
Shibutani, S.3
Eisenberg, M.4
Johnson, F.5
Grollman, A.P.6
Patel, D.J.7
-
90
-
-
67349123407
-
Electrostatic potential maps of damaged DNA studied by image analysis tools. 8-Oxoguanine and abasic site lesions
-
Bachorz RA, Lupica G, Gutowski M, Haranczyk M. Electrostatic potential maps of damaged DNA studied by image analysis tools. 8-Oxoguanine and abasic site lesions. J Mol Model 2009;15:817-827.
-
(2009)
J Mol Model
, vol.15
, pp. 817-827
-
-
Bachorz, R.A.1
Lupica, G.2
Gutowski, M.3
Haranczyk, M.4
-
91
-
-
15844379169
-
Structure of a repair enzyme interrogating undamaged DNA elucidates recognition of damaged DNA
-
Banerjee A, Yang W, Karplus M, Verdine GL. Structure of a repair enzyme interrogating undamaged DNA elucidates recognition of damaged DNA. Nature 2005;434:612-618.
-
(2005)
Nature
, vol.434
, pp. 612-618
-
-
Banerjee, A.1
Yang, W.2
Karplus, M.3
Verdine, G.L.4
-
92
-
-
72049102668
-
Encounter and extrusion of an intrahelical lesion by a DNA repair enzyme
-
Qi Y, Spong MC, Nam K, Banerjee A, Jiralerspong S, Karplus M, Verdine GL. Encounter and extrusion of an intrahelical lesion by a DNA repair enzyme. Nature 2009;462:762-768.
-
(2009)
Nature
, vol.462
, pp. 762-768
-
-
Qi, Y.1
Spong, M.C.2
Nam, K.3
Banerjee, A.4
Jiralerspong, S.5
Karplus, M.6
Verdine, G.L.7
-
93
-
-
74049108184
-
Entrapment and structure of an extrahelical guanine attempting to enter the active site of bacterial DNA glycosylase, MutM
-
Qi Y, Spong MC, Nam K, Karplus M, Verdine GL. Entrapment and structure of an extrahelical guanine attempting to enter the active site of bacterial DNA glycosylase, MutM. J Biol Chem 2010;285:1468-1478.
-
(2010)
J Biol Chem
, vol.285
, pp. 1468-1478
-
-
Qi, Y.1
Spong, M.C.2
Nam, K.3
Karplus, M.4
Verdine, G.L.5
-
95
-
-
67649832360
-
Non-target DNA binding shapes the dynamic landscape for enzymatic recognition of DNA damage
-
Friedman JI, Majumdar A, Stivers JT. Non-target DNA binding shapes the dynamic landscape for enzymatic recognition of DNA damage. Nucleic Acids Res 2009;37:3493-3500.
-
(2009)
Nucleic Acids Res
, vol.37
, pp. 3493-3500
-
-
Friedman, J.I.1
Majumdar, A.2
Stivers, J.T.3
-
96
-
-
0034734380
-
Lessons learned from structural results on uracil-DNA glycosylase
-
Parikh SS, Putnam CD, Tainer JA. Lessons learned from structural results on uracil-DNA glycosylase. Mutat Res 2000;460:183-199.
-
(2000)
Mutat Res
, vol.460
, pp. 183-199
-
-
Parikh, S.S.1
Putnam, C.D.2
Tainer, J.A.3
-
97
-
-
34547645005
-
Uracil-DNA glycosylases SMUG1 and UNG2 coordinate the initial steps of base excision repair by distinct mechanisms
-
Pettersen HS, Sundheim O, Gilljam KM, Slupphaug G, Krokan HE, Kavli B. Uracil-DNA glycosylases SMUG1 and UNG2 coordinate the initial steps of base excision repair by distinct mechanisms. Nucleic Acids Res 2007;35:3879-3892.
-
(2007)
Nucleic Acids Res
, vol.35
, pp. 3879-3892
-
-
Pettersen, H.S.1
Sundheim, O.2
Gilljam, K.M.3
Slupphaug, G.4
Krokan, H.E.5
Kavli, B.6
-
98
-
-
0037115911
-
Uracil in DNA-occurrence, consequences and repair
-
Krokan HE, Drabløs F, Slupphaug G. Uracil in DNA-occurrence, consequences and repair. Oncogene 2002;21:8935-8948.
-
(2002)
Oncogene
, vol.21
, pp. 8935-8948
-
-
Krokan, H.E.1
Drabløs, F.2
Slupphaug, G.3
-
99
-
-
34848899274
-
Enzymatic capture of an extrahelical thymine in the search for uracil in DNA
-
Parker JB, Bianchet MA, Krosky DJ, Friedman JI, Amzel LM, Stivers JT. Enzymatic capture of an extrahelical thymine in the search for uracil in DNA. Nature 2007;449:433-438.
-
(2007)
Nature
, vol.449
, pp. 433-438
-
-
Parker, J.B.1
Bianchet, M.A.2
Krosky, D.J.3
Friedman, J.I.4
Amzel, L.M.5
Stivers, J.T.6
-
100
-
-
0036431531
-
Role of base flipping in specific recognition of damaged DNA by repair enzymes
-
Fuxreiter M, Luo N, Jedlovszky P, Simon I, Osman R. Role of base flipping in specific recognition of damaged DNA by repair enzymes. J Mol Biol 2002;323:823-834.
-
(2002)
J Mol Biol
, vol.323
, pp. 823-834
-
-
Fuxreiter, M.1
Luo, N.2
Jedlovszky, P.3
Simon, I.4
Osman, R.5
-
101
-
-
1842479316
-
Linear free energy correlations for enzymatic base flipping: How do damaged base pairs facilitate specific recognition?
-
Krosky DJ, Schwarz FP, Stivers JT. Linear free energy correlations for enzymatic base flipping: How do damaged base pairs facilitate specific recognition? Biochemistry 2004;43:4188-4195.
-
(2004)
Biochemistry
, vol.43
, pp. 4188-4195
-
-
Krosky, D.J.1
Schwarz, F.P.2
Stivers, J.T.3
-
102
-
-
16544386633
-
Dynamic opening of DNA during the enzymatic search for a damaged base
-
Cao C, Jiang YL, Stivers JT, Song F. Dynamic opening of DNA during the enzymatic search for a damaged base. Nat Struct Mol Biol 2004;11:1230-1236.
-
(2004)
Nat Struct Mol Biol
, vol.11
, pp. 1230-1236
-
-
Cao, C.1
Jiang, Y.L.2
Stivers, J.T.3
Song, F.4
-
103
-
-
0032546928
-
Structures of apurinic and apyrimidinic sites in duplex DNA's
-
Beger RD, Bolton PH. Structures of apurinic and apyrimidinic sites in duplex DNA's. J Biol Chem 1998;273:15565-15573.
-
(1998)
J Biol Chem
, vol.273
, pp. 15565-15573
-
-
Beger, R.D.1
Bolton, P.H.2
-
104
-
-
0002125735
-
Abasic DNA structure, reactivity, and recognition
-
Lhomme J, Constant JF, Demeunynck M. Abasic DNA structure, reactivity, and recognition. Biopolymers 1999;52:65-83.
-
(1999)
Biopolymers
, vol.52
, pp. 65-83
-
-
Lhomme, J.1
Constant, J.F.2
Demeunynck, M.3
-
105
-
-
10644247699
-
Impact of the C1' configuration of abasic sites on DNA duplex structure
-
de Los Santos C, El-Khateeb M, Rege P, Tian K, Johnson F. Impact of the C1' configuration of abasic sites on DNA duplex structure. Biochemistry 2004;43:15349-15357.
-
(2004)
Biochemistry
, vol.43
, pp. 15349-15357
-
-
de Los Santos, C.1
El-Khateeb, M.2
Rege, P.3
Tian, K.4
Johnson, F.5
-
106
-
-
0030964066
-
Solution conformation of an abasic DNA undecamer duples d(CGCACXCACGC), d(GCGTGTGTGCG): The unpaired thymine stacks inside the helix
-
Coppel Y, Berthet N, Coulombeau C, Coulombeau C, Garcia J, Lhomme J. Solution conformation of an abasic DNA undecamer duples d(CGCACXCACGC), d(GCGTGTGTGCG): The unpaired thymine stacks inside the helix. Biochemistry 1997;36:4817-4830.
-
(1997)
Biochemistry
, vol.36
, pp. 4817-4830
-
-
Coppel, Y.1
Berthet, N.2
Coulombeau, C.3
Coulombeau, C.4
Garcia, J.5
Lhomme, J.6
-
107
-
-
33947369957
-
Nuclear magnetic resonance structural studies and molecular modeling of duplex DNA containing normal and 4'-oxidized abasic sites
-
Chen J, Dupradeau FY, Case DA, Turner CJ, Stubbe J. Nuclear magnetic resonance structural studies and molecular modeling of duplex DNA containing normal and 4'-oxidized abasic sites. Biochemistry 2007;46:3096-3107.
-
(2007)
Biochemistry
, vol.46
, pp. 3096-3107
-
-
Chen, J.1
Dupradeau, F.Y.2
Case, D.A.3
Turner, C.J.4
Stubbe, J.5
-
108
-
-
0029147479
-
Refined solution structure of a DNA heteroduplex containing an aldehydic basic site
-
Goljer I, Kumar S, Bolton PH. Refined solution structure of a DNA heteroduplex containing an aldehydic basic site. J Biol Chem 1995;270:22980-22987.
-
(1995)
J Biol Chem
, vol.270
, pp. 22980-22987
-
-
Goljer, I.1
Kumar, S.2
Bolton, P.H.3
-
109
-
-
0035881038
-
Solution structure of an oligonucleotide containing an abasic site: Evidence for an unusual deoxyribose conformation
-
Hoehn ST, Turner CJ, Stubbe J. Solution structure of an oligonucleotide containing an abasic site: Evidence for an unusual deoxyribose conformation. Nucleic Acids Res 2001;29:3413-3423.
-
(2001)
Nucleic Acids Res
, vol.29
, pp. 3413-3423
-
-
Hoehn, S.T.1
Turner, C.J.2
Stubbe, J.3
-
110
-
-
38349188454
-
DNA oligonucleotides with A, T, G, or C opposite an abasic site: Structure and dynamics
-
Chen J, Dupradeau FY, Case DA, Turner CJ, Stubbe J. DNA oligonucleotides with A, T, G, or C opposite an abasic site: Structure and dynamics. Nucleic Acids Res 2008;36:253-262.
-
(2008)
Nucleic Acids Res
, vol.36
, pp. 253-262
-
-
Chen, J.1
Dupradeau, F.Y.2
Case, D.A.3
Turner, C.J.4
Stubbe, J.5
-
111
-
-
0034234593
-
New insights into the structure of abasic DNA from molecular dynamics simulations
-
Barsky D, Foloppe N, Ahmadia S, Wilson DM, III, MacKerell AD, Jr. New insights into the structure of abasic DNA from molecular dynamics simulations. Nucleic Acids Res 2000;28:2613-2626.
-
(2000)
Nucleic Acids Res
, vol.28
, pp. 2613-2626
-
-
Barsky, D.1
Foloppe, N.2
Ahmadia, S.3
Wilson, D.I.4
MacKerell, A.J.5
-
113
-
-
0024669785
-
Influence of abasic and anucleosidic sites on stability, conformation, and melting behavior of a DNA duplex: Correlations of thermodynamic and structural data
-
Vesnaver G, Chang CN, Eisenberg M, Grollman AP, Breslauer KJ. Influence of abasic and anucleosidic sites on stability, conformation, and melting behavior of a DNA duplex: Correlations of thermodynamic and structural data. Proc Natl Acad Sci USA 1989;86:3614-3618.
-
(1989)
Proc Natl Acad Sci USA
, vol.86
, pp. 3614-3618
-
-
Vesnaver, G.1
Chang, C.N.2
Eisenberg, M.3
Grollman, A.P.4
Breslauer, K.J.5
-
114
-
-
0032546530
-
Thermodynamic consequences of an abasic lesion in duplex DNA are strongly dependent on base sequence
-
Gelfand CA, Plum GE, Grollman AP, Johnson F, Breslauer KJ. Thermodynamic consequences of an abasic lesion in duplex DNA are strongly dependent on base sequence. Biochemistry 1998;37:7321-7327.
-
(1998)
Biochemistry
, vol.37
, pp. 7321-7327
-
-
Gelfand, C.A.1
Plum, G.E.2
Grollman, A.P.3
Johnson, F.4
Breslauer, K.J.5
-
115
-
-
0034719372
-
DNA-bound structures and mutants reveal abasic DNA binding by APE1 DNA repair and coordination
-
Mol CD, Izumi T, Mitra S, Tainer JA. DNA-bound structures and mutants reveal abasic DNA binding by APE1 DNA repair and coordination. Nature 2000;403:451-456.
-
(2000)
Nature
, vol.403
, pp. 451-456
-
-
Mol, C.D.1
Izumi, T.2
Mitra, S.3
Tainer, J.A.4
-
116
-
-
0030802872
-
Replication bypass and mutagenic effect of alpha-deoxyadenosine site-specifically incorporated into single-stranded vectors
-
Shimizu H, Yagi R, Kimura Y, Makino K, Terato H, Ohyama Y, Ide H. Replication bypass and mutagenic effect of alpha-deoxyadenosine site-specifically incorporated into single-stranded vectors. Nucleic Acids Res 1997;25:597-603.
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 597-603
-
-
Shimizu, H.1
Yagi, R.2
Kimura, Y.3
Makino, K.4
Terato, H.5
Ohyama, Y.6
Ide, H.7
-
117
-
-
0013579817
-
Structure and stability of DNA containing inverted anomeric centers and polarity reversals
-
Aramini JM, van de Sande JH, Germann MW. Structure and stability of DNA containing inverted anomeric centers and polarity reversals. ACS Symp Ser 1998;682:92-105.
-
(1998)
ACS Symp Ser
, vol.682
, pp. 92-105
-
-
Aramini, J.M.1
van de Sande, J.H.2
Germann, M.W.3
-
118
-
-
1842526440
-
Solution structure of a DNA duplex containing an alpha-anomeric adenosine: Insights into substrate recognition by endonuclease IV
-
Aramini J, Cleaver JS, Pon R, Cunningham R, Germann MW. Solution structure of a DNA duplex containing an alpha-anomeric adenosine: Insights into substrate recognition by endonuclease IV. J Mol Biol 2004;338:77-91.
-
(2004)
J Mol Biol
, vol.338
, pp. 77-91
-
-
Aramini, J.1
Cleaver, J.S.2
Pon, R.3
Cunningham, R.4
Germann, M.W.5
-
120
-
-
48249129739
-
The first functional study of MLH3 mutations found in cancer patients genes chromosomes
-
Korhonen MK, Vuorenmaa E, Nystrom M. The first functional study of MLH3 mutations found in cancer patients genes chromosomes. Cancer 2008;47:803-809.
-
(2008)
Cancer
, vol.47
, pp. 803-809
-
-
Korhonen, M.K.1
Vuorenmaa, E.2
Nystrom, M.3
-
121
-
-
45449103427
-
DNA mismatch repair: Molecular mechanism, cancer and ageing
-
Hsieh P, Yamane K. DNA mismatch repair: Molecular mechanism, cancer and ageing. Mech Age Dev 2008;129:39-407.
-
(2008)
Mech Age Dev
, vol.129
, pp. 39-407
-
-
Hsieh, P.1
Yamane, K.2
-
123
-
-
72749098156
-
Unusual DNA structures and DNA damage recognition: Structure and dynamic markers
-
Germann MW, Johnson CN, Spring AM. Unusual DNA structures and DNA damage recognition: Structure and dynamic markers. Chimia 2009;63:731-736.
-
(2009)
Chimia
, vol.63
, pp. 731-736
-
-
Germann, M.W.1
Johnson, C.N.2
Spring, A.M.3
-
124
-
-
65549090160
-
Deciphering the mismatch recognition cycle in MutS and MSH2-MSH6 using normal mode analysis
-
Mukherjee S, Law SM, Feig M. Deciphering the mismatch recognition cycle in MutS and MSH2-MSH6 using normal mode analysis. Biophys J 2009;96:1707-1720.
-
(2009)
Biophys J
, vol.96
, pp. 1707-1720
-
-
Mukherjee, S.1
Law, S.M.2
Feig, M.3
-
125
-
-
45549093251
-
Bound nucleotide controls the endonuclease activity of mismatch repair enzyme MutL
-
Fukui K, Nishida M, Nakagawa N, Masui R, Kuramitsu S. Bound nucleotide controls the endonuclease activity of mismatch repair enzyme MutL. J Biol Chem 2008;283:12136-12145.
-
(2008)
J Biol Chem
, vol.283
, pp. 12136-12145
-
-
Fukui, K.1
Nishida, M.2
Nakagawa, N.3
Masui, R.4
Kuramitsu, S.5
-
126
-
-
68949145083
-
Conformational change in MSH2-MSH6 upon binding DNA coupled to ATPase activity
-
Mukherjee S, Fieg M. Conformational change in MSH2-MSH6 upon binding DNA coupled to ATPase activity. Biophys J 2009:96:L63-L65.
-
(2009)
Biophys J
, vol.96
-
-
Mukherjee, S.1
Fieg, M.2
-
127
-
-
0034635517
-
The role of mismatched nucleotides in activating the hMSH2-hMSH6 molecular switch
-
Gradia S, Acharya S, Fishel R. The role of mismatched nucleotides in activating the hMSH2-hMSH6 molecular switch. J Biol Chem 2000;275:3922-3930.
-
(2000)
J Biol Chem
, vol.275
, pp. 3922-3930
-
-
Gradia, S.1
Acharya, S.2
Fishel, R.3
-
128
-
-
0035824627
-
The Phe-X-Flu- DNA binding motif of MutS
-
Schofield MJ, Brownewell FE, Nayak S, Du C, Kool ET, Hseich P. The Phe-X-Flu- DNA binding motif of MutS. J Biol Chem 2001;276:45505-45508.
-
(2001)
J Biol Chem
, vol.276
, pp. 45505-45508
-
-
Schofield, M.J.1
Brownewell, F.E.2
Nayak, S.3
Du, C.4
Kool, E.T.5
Hseich, P.6
-
129
-
-
0034641938
-
Crystal structures of mismatch repair protein MutS and its complex with a substrate DNA
-
Obmolova G, Ban C, Hsieh P, Yang W. Crystal structures of mismatch repair protein MutS and its complex with a substrate DNA. Nature 2000;407:703-710.
-
(2000)
Nature
, vol.407
, pp. 703-710
-
-
Obmolova, G.1
Ban, C.2
Hsieh, P.3
Yang, W.4
-
130
-
-
0035252682
-
DNA mismatch repair: MutS structures bound to mismatches
-
Sixma TK. DNA mismatch repair: MutS structures bound to mismatches. Curr Opin Struct Biol 2001;11:47-52.
-
(2001)
Curr Opin Struct Biol
, vol.11
, pp. 47-52
-
-
Sixma, T.K.1
-
131
-
-
31444441667
-
Dual role of MutS glutamate 38 in DNA mismatch dicrimination and in the authorization of repair
-
Lebbink JHG, Dubravka G, Natrajan G, Fish A, Winterwerp HHK, Sixma TK, Wind ND. Dual role of MutS glutamate 38 in DNA mismatch dicrimination and in the authorization of repair. EMBO J 2006;25:409-419.
-
(2006)
EMBO J
, vol.25
, pp. 409-419
-
-
Lebbink, J.H.G.1
Dubravka, G.2
Natrajan, G.3
Fish, A.4
Winterwerp, H.H.K.5
Sixma, T.K.6
Wind, N.D.7
-
132
-
-
0033523013
-
A mutation in the MSH6 subunit of the saccharomyces cerevisiae MSH2-MSH6 complex disrupts mismatch recognition
-
Bowers J, Sokolsky T, Quach T, Alani E. A mutation in the MSH6 subunit of the saccharomyces cerevisiae MSH2-MSH6 complex disrupts mismatch recognition. J Biol Chem 1999;274:16115-16125.
-
(1999)
J Biol Chem
, vol.274
, pp. 16115-16125
-
-
Bowers, J.1
Sokolsky, T.2
Quach, T.3
Alani, E.4
-
133
-
-
76249089573
-
Saccharomyces cerevisiae MSH2-MSH6 binding kinetics reveal a mechanism of targeting sites for DNA mismatch repair
-
Zhai J, Hingorani MM. Saccharomyces cerevisiae MSH2-MSH6 binding kinetics reveal a mechanism of targeting sites for DNA mismatch repair. Proc Natl Sci USA 2010;107:680-685.
-
(2010)
Proc Natl Sci USA
, vol.107
, pp. 680-685
-
-
Zhai, J.1
Hingorani, M.M.2
-
134
-
-
0033953141
-
DNA repair: Models for damage an mismatch recognition
-
Rajski SR, Jackson BA, Barton JK. DNA repair: Models for damage an mismatch recognition. Mutat Res 2000;447:49-72.
-
(2000)
Mutat Res
, vol.447
, pp. 49-72
-
-
Rajski, S.R.1
Jackson, B.A.2
Barton, J.K.3
-
135
-
-
0030875847
-
Thermodynamics and NMR of internal GT mismatches in DNA
-
Allawi HT, SantaLucia JJ. Thermodynamics and NMR of internal GT mismatches in DNA. Biochemistry 1997;36:10581-10594.
-
(1997)
Biochemistry
, vol.36
, pp. 10581-10594
-
-
Allawi, H.T.1
SantaLucia, J.J.2
-
138
-
-
0028864424
-
Studies of base pair kinetics by NMR measurement of proton exchange
-
Geuron M, Leroy JL. Studies of base pair kinetics by NMR measurement of proton exchange. Methods Enzymol 1995;261:383-413.
-
(1995)
Methods Enzymol
, vol.261
, pp. 383-413
-
-
Geuron, M.1
Leroy, J.L.2
-
139
-
-
0027934143
-
Sequence dependence of base-pair opening in a DNA dodecamer containing the CACA/GTGT sequence motif
-
Folta-Stogniew E, Russu I. Sequence dependence of base-pair opening in a DNA dodecamer containing the CACA/GTGT sequence motif. Biochemistry 1994;33:11016-11024.
-
(1994)
Biochemistry
, vol.33
, pp. 11016-11024
-
-
Folta-Stogniew, E.1
Russu, I.2
-
140
-
-
84860348857
-
-
Applying computational methods in the study of biomolecular systems: The recognition mechanism of DNA repair enzyme Fpg. Dissertation, Stony Brooke University, Stony Brooke, NY
-
Song K. Applying computational methods in the study of biomolecular systems: The recognition mechanism of DNA repair enzyme Fpg. Dissertation, Stony Brooke University, Stony Brooke, NY, 2007.
-
(2007)
-
-
Song, K.1
-
142
-
-
63049121360
-
APE/Ref-1 Interacts with NPM1 within nucleoli and plays a role in the rRNA quality control process
-
Vascotto C, Fantini D, Romanello M, Cesaratto L, Deganuto M, Leonardi A, Radicella JP, Kelly MR, D'Ambrosio C, Scaloni A, Quadrifoglio F, Tell G. APE/Ref-1 Interacts with NPM1 within nucleoli and plays a role in the rRNA quality control process. Mol Cell Biol 2009;29:1834-1854.
-
(2009)
Mol Cell Biol
, vol.29
, pp. 1834-1854
-
-
Vascotto, C.1
Fantini, D.2
Romanello, M.3
Cesaratto, L.4
Deganuto, M.5
Leonardi, A.6
Radicella, J.P.7
Kelly, M.R.8
D'Ambrosio, C.9
Scaloni, A.10
Quadrifoglio, F.11
Tell, G.12
-
143
-
-
77950578784
-
Interaction between the MSH2 and MSH6 nucleotide binding sites in the S. cerevisiae MSH2-MSH6 complex
-
Hargreaves VV, Shell SS, Mazur DJ, Hess MT, Kolodner RD. Interaction between the MSH2 and MSH6 nucleotide binding sites in the S. cerevisiae MSH2-MSH6 complex. J Biol Chem 2010;285:9301-9310.
-
(2010)
J Biol Chem
, vol.285
, pp. 9301-9310
-
-
Hargreaves, V.V.1
Shell, S.S.2
Mazur, D.J.3
Hess, M.T.4
Kolodner, R.D.5
-
144
-
-
77955095659
-
Human AP endonuclease 1 (APE1): From mechanistic insights to druggable target in cancer
-
press. DOI: 10.1016.
-
Abbotts R, Madusudan S. Human AP endonuclease 1 (APE1): From mechanistic insights to druggable target in cancer. Cancer Treat Rev 2010; in press. DOI: 10.1016.
-
(2010)
Cancer Treat Rev
-
-
Abbotts, R.1
Madusudan, S.2
-
145
-
-
34247127167
-
Mitochondrial DNA repair: A critical player in the response of cells of the CNS to genotoxic insults
-
LeDoux SP, Druzhyna NM, Hollensworth SB, Harrison JF, Wilson GL. Mitochondrial DNA repair: A critical player in the response of cells of the CNS to genotoxic insults. Neuroscience 2007;145:1249-1259.
-
(2007)
Neuroscience
, vol.145
, pp. 1249-1259
-
-
LeDoux, S.P.1
Druzhyna, N.M.2
Hollensworth, S.B.3
Harrison, J.F.4
Wilson, G.L.5
-
146
-
-
33847618832
-
Mitochondrial drug delivery and mitochondrial disease therapy-An approach to liposome-based delivery targeted to mitochondria
-
Yamada Y, Akita H, Kogure K, Kamiya H, Harashima H. Mitochondrial drug delivery and mitochondrial disease therapy-An approach to liposome-based delivery targeted to mitochondria. Mitochondrion 2007;7:63-71.
-
(2007)
Mitochondrion
, vol.7
, pp. 63-71
-
-
Yamada, Y.1
Akita, H.2
Kogure, K.3
Kamiya, H.4
Harashima, H.5
-
147
-
-
33746189409
-
Endonucleolytic function of MutLα in human mismatch repair
-
Kadyrov FA, Dzantiev L, Constantin N, Modrich P. Endonucleolytic function of MutLα in human mismatch repair. Cell 2006;126:297-308.
-
(2006)
Cell
, vol.126
, pp. 297-308
-
-
Kadyrov, F.A.1
Dzantiev, L.2
Constantin, N.3
Modrich, P.4
-
148
-
-
0034461931
-
DNA damage in the nucleosome core is refractory to repair by human excision nuclease
-
Hara R, MO J, Sancar A. DNA damage in the nucleosome core is refractory to repair by human excision nuclease. Mol Cell Biol 2000;20:91730-99181.
-
(2000)
Mol Cell Biol
, vol.20
, pp. 91730-99181
-
-
Hara, R.1
Mo, J.2
Sancar, A.3
-
149
-
-
0036785614
-
The SWI/SNF chromatin-remodeling factor stimulates repair by human excision nuclease in the mononucleosome core particle
-
Hara R, Sancar A. The SWI/SNF chromatin-remodeling factor stimulates repair by human excision nuclease in the mononucleosome core particle. Mol Cell Biol 2002;22:6779-6787.
-
(2002)
Mol Cell Biol
, vol.22
, pp. 6779-6787
-
-
Hara, R.1
Sancar, A.2
-
150
-
-
57749097697
-
Coordinating the initial steps of base excision repair: Apurinic/apyrimidinic endonuclese 1 actively stimulates thymine DNA glycosylase by disrupting the product complex
-
Fitgerald ME, Drohat AC. Coordinating the initial steps of base excision repair: Apurinic/apyrimidinic endonuclese 1 actively stimulates thymine DNA glycosylase by disrupting the product complex. J Biol Chem 2008;283:32680-32690.
-
(2008)
J Biol Chem
, vol.283
, pp. 32680-32690
-
-
Fitgerald, M.E.1
Drohat, A.C.2
-
151
-
-
1242275388
-
Enhanced mutagenic potential of 8-oxo-7,8-dihydroguaninne when present within a clustered DNA damage site
-
Pearson CG, Shikazono N, Thacker J, O'Neill PO. Enhanced mutagenic potential of 8-oxo-7, 8-dihydroguaninne when present within a clustered DNA damage site. Nucleic Acids Res 2004;32:263-270.
-
(2004)
Nucleic Acids Res
, vol.32
, pp. 263-270
-
-
Pearson, C.G.1
Shikazono, N.2
Thacker, J.3
O'Neill, P.O.4
-
152
-
-
0035283041
-
Excision of 8-oxoguanine within clustered clustered damage by the yeast OGG1 protein
-
David-Cordonnier HM, Boiteux S, O'Neill P. Excision of 8-oxoguanine within clustered clustered damage by the yeast OGG1 protein. Nucleic Acids Res 2001;29:1107-1113.
-
(2001)
Nucleic Acids Res
, vol.29
, pp. 1107-1113
-
-
David-Cordonnier, H.M.1
Boiteux, S.2
O'Neill, P.3
-
153
-
-
38949209141
-
The chemical toxicology of 2-deoxyribose oxidation in DNA
-
Dedon PC. The chemical toxicology of 2-deoxyribose oxidation in DNA. Chem Res Toxicol 2008;21:206-219.
-
(2008)
Chem Res Toxicol
, vol.21
, pp. 206-219
-
-
Dedon, P.C.1
-
154
-
-
10044225990
-
α-anomeric dexoynucleotides, anoxic products of ionizing radiation, are substrates for the endonucease IV type AP endonucleases
-
Ischchenko AA, Ide H, Ramotar D, Nevinsky G, Saparbaev M. α-anomeric dexoynucleotides, anoxic products of ionizing radiation, are substrates for the endonucease IV type AP endonucleases. Biochemistry 2004;43:15210-15216.
-
(2004)
Biochemistry
, vol.43
, pp. 15210-15216
-
-
Ischchenko, A.A.1
Ide, H.2
Ramotar, D.3
Nevinsky, G.4
Saparbaev, M.5
-
155
-
-
0035225455
-
Keynote: Past, present, and future aspects of base excision repair
-
Lindahl T. Keynote: Past, present, and future aspects of base excision repair. Prog Nucleic Acid Res Mol Biol 2001;68:xvii-xxx.
-
(2001)
Prog Nucleic Acid Res Mol Biol
, vol.68
-
-
Lindahl, T.1
-
156
-
-
3343022751
-
An evolutionary analysis of the helix-harpin-helix superfamily of DNA repair glycosylases
-
Denver DR, Swenson SL, Lynch M. An evolutionary analysis of the helix-harpin-helix superfamily of DNA repair glycosylases. Mol Biol Evol 2003;20:1603-1611.
-
(2003)
Mol Biol Evol
, vol.20
, pp. 1603-1611
-
-
Denver, D.R.1
Swenson, S.L.2
Lynch, M.3
-
157
-
-
0037112668
-
Human DNA glycosylases of the bacterial Fpg/MutM superfamily: An alternative pathway for the repair of 8-oxoguanine and other oxidation products in DNA
-
Morland I, Rolseth V, Luna L, Rognes T, Bjørås M, Seeberg E. Human DNA glycosylases of the bacterial Fpg/MutM superfamily: An alternative pathway for the repair of 8-oxoguanine and other oxidation products in DNA. Nucleic Acids Res 2002;20:4926-4936.
-
(2002)
Nucleic Acids Res
, vol.20
, pp. 4926-4936
-
-
Morland, I.1
Rolseth, V.2
Luna, L.3
Rognes, T.4
Bjørås, M.5
Seeberg, E.6
-
158
-
-
0037310197
-
Disparity between DNA base excision repair in yeast and mammals
-
Kelly MR, Kow YW, Wilson DM, III. Disparity between DNA base excision repair in yeast and mammals. Perspect Cancer Research 2003;63:549-554.
-
(2003)
Perspect Cancer Research
, vol.63
, pp. 549-554
-
-
Kelly, M.R.1
Kow, Y.W.2
Wilson, D.I.3
-
159
-
-
0032960862
-
The Saccharomyces cerevisiae homologues of endonuclease III from Escherichia coli, Ntg1 and Ntg2, are both required for efficient repair of spontaneous and induced oxidative DNA damage in yeast
-
Alseth I, Eide L, Pirovano M, Rognes T, Seeberg E, Bjørås M. The Saccharomyces cerevisiae homologues of endonuclease III from Escherichia coli, Ntg1 and Ntg2, are both required for efficient repair of spontaneous and induced oxidative DNA damage in yeast. Mol Cell Biol 1999;19:3779-3787.
-
(1999)
Mol Cell Biol
, vol.19
, pp. 3779-3787
-
-
Alseth, I.1
Eide, L.2
Pirovano, M.3
Rognes, T.4
Seeberg, E.5
Bjørås, M.6
-
160
-
-
0142187125
-
Structural characterization of the Fpg family of DNA glycosylases
-
Zharkov DO, Shoham G, Grollman AP. Structural characterization of the Fpg family of DNA glycosylases. DNA Repair 2003;2:839-862.
-
(2003)
DNA Repair
, vol.2
, pp. 839-862
-
-
Zharkov, D.O.1
Shoham, G.2
Grollman, A.P.3
-
161
-
-
0034734383
-
Structure and function in the uracil-DNA glycosylase superfamily
-
Pearl LH. Structure and function in the uracil-DNA glycosylase superfamily. DNA repair 2000;460:165-181.
-
(2000)
DNA repair
, vol.460
, pp. 165-181
-
-
Pearl, L.H.1
-
162
-
-
60049089790
-
Uracil in DNA and its processing by different DNA glycosylases
-
Visnes T, Doseth B, Pettersen HS, Hagen L, Sousa MML, Akbari M, Otterlei M, Kavli B, Slupphaug G, Krokan HE. Uracil in DNA and its processing by different DNA glycosylases. Phil Trans R Soc B 2009;364:563-568.
-
(2009)
Phil Trans R Soc B
, vol.364
, pp. 563-568
-
-
Visnes, T.1
Doseth, B.2
Pettersen, H.S.3
Hagen, L.4
Sousa, M.M.L.5
Akbari, M.6
Otterlei, M.7
Kavli, B.8
Slupphaug, G.9
Krokan, H.E.10
-
163
-
-
0141790433
-
Recognition and removal of oxidized guanines in duplex DNA by the base excision repair enzymes hOGG1, yOGG1, and yOGG2
-
Leipold MD, Workman H, Muller JG, Burrows CJ, David SS. Recognition and removal of oxidized guanines in duplex DNA by the base excision repair enzymes hOGG1, yOGG1, and yOGG2. Biochemistry 2003;42:11373-11381.
-
(2003)
Biochemistry
, vol.42
, pp. 11373-11381
-
-
Leipold, M.D.1
Workman, H.2
Muller, J.G.3
Burrows, C.J.4
David, S.S.5
-
164
-
-
34948854919
-
Excision of 5-halogenated uracils by human thymine DNA glycosylase: Robust activity for DNA contexts other than CpG
-
Morgan MT, Bennett MT, Drohat AC. Excision of 5-halogenated uracils by human thymine DNA glycosylase: Robust activity for DNA contexts other than CpG. J Biol Chem 2007;282:27578-27586.
-
(2007)
J Biol Chem
, vol.282
, pp. 27578-27586
-
-
Morgan, M.T.1
Bennett, M.T.2
Drohat, A.C.3
-
165
-
-
34247186195
-
-
University of California, San Francisco.
-
Case DA, Darden TA, Cheatham TE, III, Simmerling CL, Wang J, Duke RE, Luo R, Merz KM, Pearlman DA, Crowley M, Walker RC, Zhang W, Wang B, Hayik S, Roitberg A, Seabra G, Wong KF, Paesani F, Wu X, Brozell S, Tsui V, Gohlke H, Yang L, Tan C, Mongan J, Hornak V, Cui G, Beroza P, Mathews DH, Schafmeister C, Ross WS, Kollman PA. AMBER 9. University of California, San Francisco.
-
AMBER 9
-
-
Case, D.A.1
Darden, T.A.2
Cheatham III, T.E.3
Simmerling, C.L.4
Wang, J.5
Duke, R.E.6
Luo, R.7
Merz, K.M.8
Pearlman, D.A.9
Crowley, M.10
Walker, R.C.11
Zhang, W.12
Wang, B.13
Hayik, S.14
Roitberg, A.15
Seabra, G.16
Wong, K.F.17
Paesani, F.18
Wu, X.19
Brozell, S.20
Tsui, V.21
Gohlke, H.22
Yang, L.23
Tan, C.24
Mongan, J.25
Hornak, V.26
Cui, G.27
Beroza, P.28
Mathews, D.H.29
Schafmeister, C.30
Ross, W.S.31
Kollman, P.A.32
more..
|