메뉴 건너뛰기




Volumn 812, Issue , 2012, Pages 63-87

A stringent yeast two-hybrid matrix screening approach for protein-protein interaction discovery

Author keywords

FKBP6 FKBP36; Interactome mapping; Large scale screen; Network biology; PRKACA PKC alpha; Protein protein interactions; STUB1 Chip; Yeast two hybrid

Indexed keywords

BETA GALACTOSIDASE; PROTEIN;

EID: 84856304670     PISSN: 10643745     EISSN: None     Source Type: Book Series    
DOI: 10.1007/978-1-61779-455-1_4     Document Type: Article
Times cited : (23)

References (55)
  • 1
    • 0024406857 scopus 로고
    • A novel genetic system to detect protein-protein interactions
    • Fields S, Song O. (1989) A novel genetic system to detect protein-protein interactions. Nature 340, 245-6.
    • (1989) Nature , vol.340 , pp. 245-246
    • Fields, S.1    Song, O.2
  • 2
    • 0030963019 scopus 로고    scopus 로고
    • Toward a functional analysis of the yeast genome through exhaustive two-hybrid screens
    • Fromont-Racine M, Rain JC, Legrain P. (1997) Toward a functional analysis of the yeast genome through exhaustive two-hybrid screens. Nat Genet 16, 277-82.
    • (1997) Nat Genet , vol.16 , pp. 277-282
    • Fromont-Racine, M.1    Rain, J.C.2    Legrain, P.3
  • 3
    • 0034628508 scopus 로고    scopus 로고
    • A comprehensive analysis of protein-protein interactions in Saccharomyces cerevisiae
    • Uetz P, Giot L, Cagney G, et al. (2000) A comprehensive analysis of protein-protein interactions in Saccharomyces cerevisiae. Nature 403, 623-7.
    • (2000) Nature , vol.403 , pp. 623-627
    • Uetz, P.1    Giot, L.2    Cagney, G.3
  • 4
    • 0034614678 scopus 로고    scopus 로고
    • Protein interaction mapping in C. elegans using proteins involved in vulval development
    • Walhout AJ, Sordella R, Lu X, et al. (2000) Protein interaction mapping in C. elegans using proteins involved in vulval development. Science 287, 116-22.
    • (2000) Science , vol.287 , pp. 116-122
    • Walhout, A.J.1    Sordella, R.2    Lu, X.3
  • 6
    • 0037059461 scopus 로고    scopus 로고
    • A combined experimental and computational strategy to define protein interaction networks for peptide recognition modules
    • Tong AH, Drees B, Nardelli G, et al. (2002) A combined experimental and computational strategy to define protein interaction networks for peptide recognition modules. Science 295, 321-4.
    • (2002) Science , vol.295 , pp. 321-324
    • Tong, A.H.1    Drees, B.2    Nardelli, G.3
  • 7
    • 4644231870 scopus 로고    scopus 로고
    • A protein interaction network links GIT1, an enhancer of Huntingtin aggregation, to Huntington's disease
    • Goehler H, Lalowski M, Stelzl U, et al. (2004) A protein interaction network links GIT1, an enhancer of Huntingtin aggregation, to Huntington's disease. Mol Cell 15, 853-65.
    • (2004) Mol Cell , vol.15 , pp. 853-865
    • Goehler, H.1    Lalowski, M.2    Stelzl, U.3
  • 8
    • 3543143101 scopus 로고    scopus 로고
    • Functional proteomics mapping of a human signaling pathway
    • Colland F, Jacq X, Trouplin V, et al. (2004) Functional proteomics mapping of a human signaling pathway. Genome Res 14, 1324-32.
    • (2004) Genome Res , vol.14 , pp. 1324-1332
    • Colland, F.1    Jacq, X.2    Trouplin, V.3
  • 9
    • 20144379646 scopus 로고    scopus 로고
    • Protein interaction mapping: A Drosophila case study
    • Formstecher E, Aresta S, Collura V, et al. (2005) Protein interaction mapping: a Drosophila case study. Genome Res 15, 376-84.
    • (2005) Genome Res , vol.15 , pp. 376-384
    • Formstecher, E.1    Aresta, S.2    Collura, V.3
  • 10
    • 24744436626 scopus 로고    scopus 로고
    • Large-scale identification of yeast integral membrane protein interactions
    • Miller JP, Lo RS, Ben-Hur A, et al. (2005) Large-scale identification of yeast integral membrane protein interactions. Proc Natl Acad Sci USA 102, 12123-8.
    • (2005) Proc Natl Acad Sci USA , vol.102 , pp. 12123-12128
    • Miller, J.P.1    Lo, R.S.2    Ben-Hur, A.3
  • 11
    • 33646687963 scopus 로고    scopus 로고
    • A proteinprotein interaction network for human inherited ataxias and disorders of Purkinje cell degeneration
    • Lim J, Hao T, Shaw C, et al. (2006) A proteinprotein interaction network for human inherited ataxias and disorders of Purkinje cell degeneration. Cell 125, 801-14.
    • (2006) Cell , vol.125 , pp. 801-814
    • Lim, J.1    Hao, T.2    Shaw, C.3
  • 12
    • 34249715853 scopus 로고    scopus 로고
    • Huntingtin interacting proteins are genetic modifi ers of neurodegeneration
    • Kaltenbach LS, Romero E, Becklin RR, et al. (2007) Huntingtin interacting proteins are genetic modifi ers of neurodegeneration. PLoS Genet 3, e82.
    • (2007) PLoS Genet , vol.3
    • Kaltenbach, L.S.1    Romero, E.2    Becklin, R.R.3
  • 13
    • 70349645557 scopus 로고    scopus 로고
    • Analysis of the human E2 ubiquitin conjugating enzyme protein interaction network
    • Markson G, Kiel C, Hyde R, et al. (2009) Analysis of the human E2 ubiquitin conjugating enzyme protein interaction network. Genome Res 19, 1905-11.
    • (2009) Genome Res , vol.19 , pp. 1905-1911
    • Markson, G.1    Kiel, C.2    Hyde, R.3
  • 14
    • 69249150517 scopus 로고    scopus 로고
    • A comprehensive framework of E2-RING E3 interactions of the human ubiquitin-proteasome system
    • van Wijk SJ, de Vries SJ, Kemmeren P, et al. (2009) A comprehensive framework of E2-RING E3 interactions of the human ubiquitin-proteasome system. Mol Syst Biol 5, 295.
    • (2009) Mol Syst Biol , vol.5 , pp. 295
    • Van Wijk, S.J.1    De Vries, S.J.2    Kemmeren, P.3
  • 15
    • 63449089465 scopus 로고    scopus 로고
    • A human protein interaction network shows conservation of aging processes between human and invertebrate species
    • Bell R, Hubbard A, Chettier R, et al. (2009) A human protein interaction network shows conservation of aging processes between human and invertebrate species. PLoS Genet 5, e1000414.
    • (2009) PLoS Genet , vol.5
    • Bell, R.1    Hubbard, A.2    Chettier, R.3
  • 16
    • 0345600247 scopus 로고    scopus 로고
    • A protein interaction map of Drosophila melanogaster
    • Giot L, Bader JS, Brouwer C, et al. (2003) A protein interaction map of Drosophila melanogaster. Science 302, 1727-36.
    • (2003) Science , vol.302 , pp. 1727-1736
    • Giot, L.1    Bader, J.S.2    Brouwer, C.3
  • 17
    • 9144264169 scopus 로고    scopus 로고
    • A map of the interactome network of the metazoan C. elegans
    • Li S, Armstrong CM, Bertin N, et al. (2004) A map of the interactome network of the metazoan C. elegans. Science 303, 540-3.
    • (2004) Science , vol.303 , pp. 540-543
    • Li, S.1    Armstrong, C.M.2    Bertin, N.3
  • 18
    • 25144498379 scopus 로고    scopus 로고
    • A human protein-protein interaction network: A resource for annotating the proteome
    • Stelzl U, Worm U, Lalowski M, et al. (2005) A human protein-protein interaction network: a resource for annotating the proteome. Cell 122, 957-68.
    • (2005) Cell , vol.122 , pp. 957-968
    • Stelzl, U.1    Worm, U.2    Lalowski, M.3
  • 19
    • 27144530248 scopus 로고    scopus 로고
    • Towards a proteome-scale map of the human protein-protein interaction network
    • Rual JF, Venkatesan K, Hao T, et al. (2005) Towards a proteome-scale map of the human protein-protein interaction network. Nature 437, 1173-8.
    • (2005) Nature , vol.437 , pp. 1173-1178
    • Rual, J.F.1    Venkatesan, K.2    Hao, T.3
  • 20
    • 27644484749 scopus 로고    scopus 로고
    • A protein interaction network of the malaria parasite Plasmodium falciparum
    • LaCount DJ, Vignali M, Chettier R, et al. (2005) A protein interaction network of the malaria parasite Plasmodium falciparum. Nature 438, 103-7.
    • (2005) Nature , vol.438 , pp. 103-107
    • Lacount, D.J.1    Vignali, M.2    Chettier, R.3
  • 22
    • 53349117774 scopus 로고    scopus 로고
    • High-quality binary protein interaction map of the yeast interactome network
    • Yu H, Braun P, Yildirim MA, et al. (2008) High-quality binary protein interaction map of the yeast interactome network. Science 322, 104-10.
    • (2008) Science , vol.322 , pp. 104-110
    • Yu, H.1    Braun, P.2    Yildirim, M.A.3
  • 23
    • 38549161592 scopus 로고    scopus 로고
    • A proteome-wide protein interaction map for Campylobacter jejuni
    • Parrish JR, Yu J, Liu G, et al. (2007) A proteome-wide protein interaction map for Campylobacter jejuni. Genome Biol 8, R130.
    • (2007) Genome Biol , vol.8
    • Parrish, J.R.1    Yu, J.2    Liu, G.3
  • 24
    • 58149242456 scopus 로고    scopus 로고
    • An experimentally derived confi dence score for binary protein-protein interactions
    • Braun P, Tasan M, Dreze M, et al. (2009) An experimentally derived confi dence score for binary protein-protein interactions. Nat Methods 6, 91-7.
    • (2009) Nat Methods , vol.6 , pp. 91-97
    • Braun, P.1    Tasan, M.2    Dreze, M.3
  • 25
    • 46749110040 scopus 로고    scopus 로고
    • Mapping the human protein interactome
    • Figeys D. (2008) Mapping the human protein interactome. Cell Res 18, 716-24.
    • (2008) Cell Res , vol.18 , pp. 716-724
    • Figeys, D.1
  • 27
    • 58149305794 scopus 로고    scopus 로고
    • An empirical framework for binary interactome mapping
    • Venkatesan K, Rual JF, Vazquez A, et al. (2009) An empirical framework for binary interactome mapping. Nat Methods 6, 83-90.
    • (2009) Nat Methods , vol.6 , pp. 83-90
    • Venkatesan, K.1    Rual, J.F.2    Vazquez, A.3
  • 28
    • 0032703169 scopus 로고    scopus 로고
    • A genetic strategy to eliminate self-activator baits prior to high-throughput yeast two-hybrid screens
    • Walhout AJ, Vidal M. (1999) A genetic strategy to eliminate self-activator baits prior to high-throughput yeast two-hybrid screens. Genome Res 9, 1128-34.
    • (1999) Genome Res , vol.9 , pp. 1128-1134
    • Walhout, A.J.1    Vidal, M.2
  • 29
    • 1542345539 scopus 로고    scopus 로고
    • Increasing specifi city in high-throughput yeast two-hybrid experiments
    • Vidalain PO, Boxem M, Ge H, Li S, Vidal M. (2004) Increasing specifi city in high-throughput yeast two-hybrid experiments. Methods 32, 363-70.
    • (2004) Methods , vol.32 , pp. 363-370
    • Vidalain, P.O.1    Boxem, M.2    Ge, H.3    Li, S.4    Vidal, M.5
  • 30
    • 73249129711 scopus 로고    scopus 로고
    • Benchmarking yeast two-hybrid systems using the interactions of bacterial motility proteins
    • Rajagopala SV, Hughes KT, Uetz P. (2009) Benchmarking yeast two-hybrid systems using the interactions of bacterial motility proteins. Proteomics 9, 5296-302.
    • (2009) Proteomics , vol.9 , pp. 5296-5302
    • Rajagopala, S.V.1    Hughes, K.T.2    Uetz, P.3
  • 32
    • 0029092610 scopus 로고
    • Correlation of two-hybrid affinity data with in vitro measurements
    • Estojak J, Brent R, Golemis EA. (1995) Correlation of two-hybrid affinity data with in vitro measurements. Mol Cell Biol 15, 5820-9.
    • (1995) Mol Cell Biol , vol.15 , pp. 5820-5829
    • Estojak, J.1    Brent, R.2    Golemis, E.A.3
  • 33
    • 58149218155 scopus 로고    scopus 로고
    • Empirically controlled mapping of the Caenorhabditis elegans protein-protein interactome network
    • Simonis N, Rual JF, Carvunis AR, et al. (2009) Empirically controlled mapping of the Caenorhabditis elegans protein-protein interactome network. Nat Methods 6, 47-54.
    • (2009) Nat Methods , vol.6 , pp. 47-54
    • Simonis, N.1    Rual, J.F.2    Carvunis, A.R.3
  • 34
    • 0037058609 scopus 로고    scopus 로고
    • Design and use of a mammalian protein-protein interaction trap (MAPPIT)
    • Eyckerman S, Lemmens I, Lievens S, et al. (2002) Design and use of a mammalian protein-protein interaction trap (MAPPIT). Sci STKE 2002, pl18.
    • (2002) Sci STKE , vol.2002
    • Eyckerman, S.1    Lemmens, I.2    Lievens, S.3
  • 35
    • 33751395622 scopus 로고    scopus 로고
    • The value of high quality protein-protein interaction networks for systems biology
    • Stelzl U, Wanker EE. (2006) The value of high quality protein-protein interaction networks for systems biology. Curr Opin Chem Biol 10, 551-8.
    • (2006) Curr Opin Chem Biol , vol.10 , pp. 551-558
    • Stelzl, U.1    Wanker, E.E.2
  • 37
    • 63849310190 scopus 로고    scopus 로고
    • The Cartographers toolbox: Building bigger and better human protein interaction networks
    • Sanderson CM. (2009) The Cartographers toolbox: building bigger and better human protein interaction networks. Brief Funct Genomic Proteomic 8, 1-11.
    • (2009) Brief Funct Genomic Proteomic , vol.8 , pp. 1-11
    • Sanderson, C.M.1
  • 38
    • 33846844989 scopus 로고    scopus 로고
    • HORFeome v3.1: A resource of human open reading frames representing over 10,000 human genes
    • Lamesch P, Li N, Milstein S, et al. (2007) hORFeome v3.1: a resource of human open reading frames representing over 10,000 human genes. Genomics 89, 307-15.
    • (2007) Genomics , vol.89 , pp. 307-315
    • Lamesch, P.1    Li, N.2    Milstein, S.3
  • 39
    • 57049126143 scopus 로고    scopus 로고
    • Human protein factory for converting the transcriptome into an in vitro-expressed proteome
    • Goshima N, Kawamura Y, Fukumoto A, et al. (2008) Human protein factory for converting the transcriptome into an in vitro-expressed proteome. Nat Methods 5, 1011-7.
    • (2008) Nat Methods , vol.5 , pp. 1011-1017
    • Goshima, N.1    Kawamura, Y.2    Fukumoto, A.3
  • 40
    • 73249119724 scopus 로고    scopus 로고
    • The completion of the Mammalian Gene Collection (MGC)
    • Temple G, Gerhard DS, Rasooly R, et al. (2009) The completion of the Mammalian Gene Collection (MGC). Genome Res 19, 2324-33.
    • (2009) Genome Res , vol.19 , pp. 2324-2333
    • Temple, G.1    Gerhard, D.S.2    Rasooly, R.3
  • 41
    • 0024558335 scopus 로고
    • One-step preparation of competent Escherichia coli: Transformation and storage of bacterial cells in the same solution
    • Chung CT, Niemela SL, Miller RH. (1989) One-step preparation of competent Escherichia coli: transformation and storage of bacterial cells in the same solution. Proc Natl Acad Sci USA 86, 2172-5.
    • (1989) Proc Natl Acad Sci USA , vol.86 , pp. 2172-2175
    • Chung, C.T.1    Niemela, S.L.2    Miller, R.H.3
  • 42
    • 33646381658 scopus 로고    scopus 로고
    • A pooling-deconvolution strategy for biological network elucidation
    • Jin F, Hazbun T, Michaud GA, et al. (2006) A pooling-deconvolution strategy for biological network elucidation. Nat Methods 3, 183-9.
    • (2006) Nat Methods , vol.3 , pp. 183-189
    • Jin, F.1    Hazbun, T.2    Michaud, G.A.3
  • 43
    • 67650022867 scopus 로고    scopus 로고
    • Shifted transversal design smart-pooling for high coverage interactome mapping
    • Xin X, Rual JF, Hirozane-Kishikawa T, et al. (2009) Shifted Transversal Design smart-pooling for high coverage interactome mapping. Genome Res 19, 1262-9.
    • (2009) Genome Res , vol.19 , pp. 1262-1269
    • Xin, X.1    Rual, J.F.2    Hirozane-Kishikawa, T.3
  • 44
    • 4644306020 scopus 로고    scopus 로고
    • Analyzing protein function on a genomic scale: The importance of gold-standard positives and negatives for network prediction
    • Jansen R, Gerstein M. (2004) Analyzing protein function on a genomic scale: the importance of gold-standard positives and negatives for network prediction. Curr Opin Microbiol 7, 535-45.
    • (2004) Curr Opin Microbiol , vol.7 , pp. 535-545
    • Jansen, R.1    Gerstein, M.2
  • 45
  • 46
    • 33947095027 scopus 로고    scopus 로고
    • A human phenome-interactome network of protein complexes implicated in genetic disorders
    • Lage K, Karlberg EO, Storling ZM, et al. (2007) A human phenome-interactome network of protein complexes implicated in genetic disorders. Nat Biotechnol 25, 309-16.
    • (2007) Nat Biotechnol , vol.25 , pp. 309-316
    • Lage, K.1    Karlberg, E.O.2    Storling, Z.M.3
  • 47
    • 41549139527 scopus 로고    scopus 로고
    • Walking the interactome for prioritization of candidate disease genes
    • Kohler S, Bauer S, Horn D, Robinson PN. (2008) Walking the interactome for prioritization of candidate disease genes. Am J Hum Genet 82, 949-58.
    • (2008) Am J Hum Genet , vol.82 , pp. 949-958
    • Kohler, S.1    Bauer, S.2    Horn, D.3    Robinson, P.N.4
  • 48
    • 59849125136 scopus 로고    scopus 로고
    • Dynamic modularity in protein interaction networks predicts breast cancer outcome
    • Taylor IW, Linding R, Warde-Farley D, et al. (2009) Dynamic modularity in protein interaction networks predicts breast cancer outcome. Nat Biotechnol 27, 199-204.
    • (2009) Nat Biotechnol , vol.27 , pp. 199-204
    • Taylor, I.W.1    Linding, R.2    Warde-Farley, D.3
  • 49
    • 35349024501 scopus 로고    scopus 로고
    • Network modeling links breast cancer susceptibility and centrosome dysfunction
    • Pujana MA, Han JD, Starita LM, et al. (2007) Network modeling links breast cancer susceptibility and centrosome dysfunction. Nat Genet 39, 1338-49.
    • (2007) Nat Genet , vol.39 , pp. 1338-1349
    • Pujana, M.A.1    Han, J.D.2    Starita, L.M.3
  • 50
    • 75149147806 scopus 로고    scopus 로고
    • Regulation of epidermal growth factor receptor traffi cking by lysine deacetylase HDAC6
    • Deribe YL, Wild P, Chandrashaker A, et al. (2009) Regulation of epidermal growth factor receptor traffi cking by lysine deacetylase HDAC6. Sci Signal 2, ra84.
    • (2009) Sci Signal , vol.2
    • Deribe, Y.L.1    Wild, P.2    Chandrashaker, A.3
  • 51
    • 33644674937 scopus 로고    scopus 로고
    • Identifi cation of VCP/p97, carboxyl terminus of Hsp70-interacting protein (CHIP), and amphiphysin II interaction partners using membrane-based human proteome arrays
    • Grelle G, Kostka S, Otto A, et al. (2006) Identifi cation of VCP/p97, carboxyl terminus of Hsp70-interacting protein (CHIP), and amphiphysin II interaction partners using membrane-based human proteome arrays. Mol Cell Proteomics 5, 234-44.
    • (2006) Mol Cell Proteomics , vol.5 , pp. 234-244
    • Grelle, G.1    Kostka, S.2    Otto, A.3
  • 53
    • 46049113510 scopus 로고    scopus 로고
    • FKBP36 forms complexes with clathrin and Hsp72 in spermatocytes
    • Jarczowski F, Fischer G, Edlich F. (2008) FKBP36 forms complexes with clathrin and Hsp72 in spermatocytes. Biochemistry 47, 6946-52.
    • (2008) Biochemistry , vol.47 , pp. 6946-6952
    • Jarczowski, F.1    Fischer, G.2    Edlich, F.3
  • 54
    • 34250902930 scopus 로고    scopus 로고
    • Targeting the protein kinase C family: Are we there yet?
    • Mackay HJ, Twelves CJ. (2007) Targeting the protein kinase C family: are we there yet? Nat Rev Cancer 7, 554-62.
    • (2007) Nat Rev Cancer , vol.7 , pp. 554-562
    • MacKay, H.J.1    Twelves, C.J.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.