-
1
-
-
0024406857
-
A novel genetic system to detect protein-protein interactions
-
Fields S, Song O. (1989) A novel genetic system to detect protein-protein interactions. Nature 340, 245-6.
-
(1989)
Nature
, vol.340
, pp. 245-246
-
-
Fields, S.1
Song, O.2
-
2
-
-
0030963019
-
Toward a functional analysis of the yeast genome through exhaustive two-hybrid screens
-
Fromont-Racine M, Rain JC, Legrain P. (1997) Toward a functional analysis of the yeast genome through exhaustive two-hybrid screens. Nat Genet 16, 277-82.
-
(1997)
Nat Genet
, vol.16
, pp. 277-282
-
-
Fromont-Racine, M.1
Rain, J.C.2
Legrain, P.3
-
3
-
-
0034628508
-
A comprehensive analysis of protein-protein interactions in Saccharomyces cerevisiae
-
Uetz P, Giot L, Cagney G, et al. (2000) A comprehensive analysis of protein-protein interactions in Saccharomyces cerevisiae. Nature 403, 623-7.
-
(2000)
Nature
, vol.403
, pp. 623-627
-
-
Uetz, P.1
Giot, L.2
Cagney, G.3
-
4
-
-
0034614678
-
Protein interaction mapping in C. elegans using proteins involved in vulval development
-
Walhout AJ, Sordella R, Lu X, et al. (2000) Protein interaction mapping in C. elegans using proteins involved in vulval development. Science 287, 116-22.
-
(2000)
Science
, vol.287
, pp. 116-122
-
-
Walhout, A.J.1
Sordella, R.2
Lu, X.3
-
5
-
-
0035836765
-
A comprehensive twohybrid analysis to explore the yeast protein interactome
-
Ito T, Chiba T, Ozawa R, Yoshida M, Hattori M, Sakaki Y. (2001) A comprehensive twohybrid analysis to explore the yeast protein interactome. Proc Natl Acad Sci USA 98, 4569-74.
-
(2001)
Proc Natl Acad Sci USA
, vol.98
, pp. 4569-4574
-
-
Ito, T.1
Chiba, T.2
Ozawa, R.3
Yoshida, M.4
Hattori, M.5
Sakaki, Y.6
-
6
-
-
0037059461
-
A combined experimental and computational strategy to define protein interaction networks for peptide recognition modules
-
Tong AH, Drees B, Nardelli G, et al. (2002) A combined experimental and computational strategy to define protein interaction networks for peptide recognition modules. Science 295, 321-4.
-
(2002)
Science
, vol.295
, pp. 321-324
-
-
Tong, A.H.1
Drees, B.2
Nardelli, G.3
-
7
-
-
4644231870
-
A protein interaction network links GIT1, an enhancer of Huntingtin aggregation, to Huntington's disease
-
Goehler H, Lalowski M, Stelzl U, et al. (2004) A protein interaction network links GIT1, an enhancer of Huntingtin aggregation, to Huntington's disease. Mol Cell 15, 853-65.
-
(2004)
Mol Cell
, vol.15
, pp. 853-865
-
-
Goehler, H.1
Lalowski, M.2
Stelzl, U.3
-
8
-
-
3543143101
-
Functional proteomics mapping of a human signaling pathway
-
Colland F, Jacq X, Trouplin V, et al. (2004) Functional proteomics mapping of a human signaling pathway. Genome Res 14, 1324-32.
-
(2004)
Genome Res
, vol.14
, pp. 1324-1332
-
-
Colland, F.1
Jacq, X.2
Trouplin, V.3
-
9
-
-
20144379646
-
Protein interaction mapping: A Drosophila case study
-
Formstecher E, Aresta S, Collura V, et al. (2005) Protein interaction mapping: a Drosophila case study. Genome Res 15, 376-84.
-
(2005)
Genome Res
, vol.15
, pp. 376-384
-
-
Formstecher, E.1
Aresta, S.2
Collura, V.3
-
10
-
-
24744436626
-
Large-scale identification of yeast integral membrane protein interactions
-
Miller JP, Lo RS, Ben-Hur A, et al. (2005) Large-scale identification of yeast integral membrane protein interactions. Proc Natl Acad Sci USA 102, 12123-8.
-
(2005)
Proc Natl Acad Sci USA
, vol.102
, pp. 12123-12128
-
-
Miller, J.P.1
Lo, R.S.2
Ben-Hur, A.3
-
11
-
-
33646687963
-
A proteinprotein interaction network for human inherited ataxias and disorders of Purkinje cell degeneration
-
Lim J, Hao T, Shaw C, et al. (2006) A proteinprotein interaction network for human inherited ataxias and disorders of Purkinje cell degeneration. Cell 125, 801-14.
-
(2006)
Cell
, vol.125
, pp. 801-814
-
-
Lim, J.1
Hao, T.2
Shaw, C.3
-
12
-
-
34249715853
-
Huntingtin interacting proteins are genetic modifi ers of neurodegeneration
-
Kaltenbach LS, Romero E, Becklin RR, et al. (2007) Huntingtin interacting proteins are genetic modifi ers of neurodegeneration. PLoS Genet 3, e82.
-
(2007)
PLoS Genet
, vol.3
-
-
Kaltenbach, L.S.1
Romero, E.2
Becklin, R.R.3
-
13
-
-
70349645557
-
Analysis of the human E2 ubiquitin conjugating enzyme protein interaction network
-
Markson G, Kiel C, Hyde R, et al. (2009) Analysis of the human E2 ubiquitin conjugating enzyme protein interaction network. Genome Res 19, 1905-11.
-
(2009)
Genome Res
, vol.19
, pp. 1905-1911
-
-
Markson, G.1
Kiel, C.2
Hyde, R.3
-
14
-
-
69249150517
-
A comprehensive framework of E2-RING E3 interactions of the human ubiquitin-proteasome system
-
van Wijk SJ, de Vries SJ, Kemmeren P, et al. (2009) A comprehensive framework of E2-RING E3 interactions of the human ubiquitin-proteasome system. Mol Syst Biol 5, 295.
-
(2009)
Mol Syst Biol
, vol.5
, pp. 295
-
-
Van Wijk, S.J.1
De Vries, S.J.2
Kemmeren, P.3
-
15
-
-
63449089465
-
A human protein interaction network shows conservation of aging processes between human and invertebrate species
-
Bell R, Hubbard A, Chettier R, et al. (2009) A human protein interaction network shows conservation of aging processes between human and invertebrate species. PLoS Genet 5, e1000414.
-
(2009)
PLoS Genet
, vol.5
-
-
Bell, R.1
Hubbard, A.2
Chettier, R.3
-
16
-
-
0345600247
-
A protein interaction map of Drosophila melanogaster
-
Giot L, Bader JS, Brouwer C, et al. (2003) A protein interaction map of Drosophila melanogaster. Science 302, 1727-36.
-
(2003)
Science
, vol.302
, pp. 1727-1736
-
-
Giot, L.1
Bader, J.S.2
Brouwer, C.3
-
17
-
-
9144264169
-
A map of the interactome network of the metazoan C. elegans
-
Li S, Armstrong CM, Bertin N, et al. (2004) A map of the interactome network of the metazoan C. elegans. Science 303, 540-3.
-
(2004)
Science
, vol.303
, pp. 540-543
-
-
Li, S.1
Armstrong, C.M.2
Bertin, N.3
-
18
-
-
25144498379
-
A human protein-protein interaction network: A resource for annotating the proteome
-
Stelzl U, Worm U, Lalowski M, et al. (2005) A human protein-protein interaction network: a resource for annotating the proteome. Cell 122, 957-68.
-
(2005)
Cell
, vol.122
, pp. 957-968
-
-
Stelzl, U.1
Worm, U.2
Lalowski, M.3
-
19
-
-
27144530248
-
Towards a proteome-scale map of the human protein-protein interaction network
-
Rual JF, Venkatesan K, Hao T, et al. (2005) Towards a proteome-scale map of the human protein-protein interaction network. Nature 437, 1173-8.
-
(2005)
Nature
, vol.437
, pp. 1173-1178
-
-
Rual, J.F.1
Venkatesan, K.2
Hao, T.3
-
20
-
-
27644484749
-
A protein interaction network of the malaria parasite Plasmodium falciparum
-
LaCount DJ, Vignali M, Chettier R, et al. (2005) A protein interaction network of the malaria parasite Plasmodium falciparum. Nature 438, 103-7.
-
(2005)
Nature
, vol.438
, pp. 103-107
-
-
Lacount, D.J.1
Vignali, M.2
Chettier, R.3
-
22
-
-
53349117774
-
High-quality binary protein interaction map of the yeast interactome network
-
Yu H, Braun P, Yildirim MA, et al. (2008) High-quality binary protein interaction map of the yeast interactome network. Science 322, 104-10.
-
(2008)
Science
, vol.322
, pp. 104-110
-
-
Yu, H.1
Braun, P.2
Yildirim, M.A.3
-
23
-
-
38549161592
-
A proteome-wide protein interaction map for Campylobacter jejuni
-
Parrish JR, Yu J, Liu G, et al. (2007) A proteome-wide protein interaction map for Campylobacter jejuni. Genome Biol 8, R130.
-
(2007)
Genome Biol
, vol.8
-
-
Parrish, J.R.1
Yu, J.2
Liu, G.3
-
24
-
-
58149242456
-
An experimentally derived confi dence score for binary protein-protein interactions
-
Braun P, Tasan M, Dreze M, et al. (2009) An experimentally derived confi dence score for binary protein-protein interactions. Nat Methods 6, 91-7.
-
(2009)
Nat Methods
, vol.6
, pp. 91-97
-
-
Braun, P.1
Tasan, M.2
Dreze, M.3
-
25
-
-
46749110040
-
Mapping the human protein interactome
-
Figeys D. (2008) Mapping the human protein interactome. Cell Res 18, 716-24.
-
(2008)
Cell Res
, vol.18
, pp. 716-724
-
-
Figeys, D.1
-
26
-
-
58149234807
-
Cost-effective strategies for completing the interactome
-
Schwartz AS, Yu J, Gardenour KR, Finley RL, Jr., Ideker T. (2009) Cost-effective strategies for completing the interactome. Nat Methods 6, 55-61.
-
(2009)
Nat Methods
, vol.6
, pp. 55-61
-
-
Schwartz, A.S.1
Yu, J.2
Gardenour, K.R.3
Finley Jr., R.L.4
Ideker, T.5
-
27
-
-
58149305794
-
An empirical framework for binary interactome mapping
-
Venkatesan K, Rual JF, Vazquez A, et al. (2009) An empirical framework for binary interactome mapping. Nat Methods 6, 83-90.
-
(2009)
Nat Methods
, vol.6
, pp. 83-90
-
-
Venkatesan, K.1
Rual, J.F.2
Vazquez, A.3
-
28
-
-
0032703169
-
A genetic strategy to eliminate self-activator baits prior to high-throughput yeast two-hybrid screens
-
Walhout AJ, Vidal M. (1999) A genetic strategy to eliminate self-activator baits prior to high-throughput yeast two-hybrid screens. Genome Res 9, 1128-34.
-
(1999)
Genome Res
, vol.9
, pp. 1128-1134
-
-
Walhout, A.J.1
Vidal, M.2
-
29
-
-
1542345539
-
Increasing specifi city in high-throughput yeast two-hybrid experiments
-
Vidalain PO, Boxem M, Ge H, Li S, Vidal M. (2004) Increasing specifi city in high-throughput yeast two-hybrid experiments. Methods 32, 363-70.
-
(2004)
Methods
, vol.32
, pp. 363-370
-
-
Vidalain, P.O.1
Boxem, M.2
Ge, H.3
Li, S.4
Vidal, M.5
-
30
-
-
73249129711
-
Benchmarking yeast two-hybrid systems using the interactions of bacterial motility proteins
-
Rajagopala SV, Hughes KT, Uetz P. (2009) Benchmarking yeast two-hybrid systems using the interactions of bacterial motility proteins. Proteomics 9, 5296-302.
-
(2009)
Proteomics
, vol.9
, pp. 5296-5302
-
-
Rajagopala, S.V.1
Hughes, K.T.2
Uetz, P.3
-
31
-
-
69249134282
-
Interaction trap/two-hybrid system to identify interacting proteins
-
Chapter 19, Unit19 2
-
Golemis EA, Serebriiskii I, Finley RL, Jr., Kolonin MG, Gyuris J, Brent R. (2009) Interaction trap/two-hybrid system to identify interacting proteins. Curr Protoc Protein Sci Chapter 19, Unit19 2.
-
(2009)
Curr Protoc Protein Sci
-
-
Golemis, E.A.1
Serebriiskii, I.2
Finley Jr., R.L.3
Kolonin, M.G.4
Gyuris, J.5
Brent, R.6
-
32
-
-
0029092610
-
Correlation of two-hybrid affinity data with in vitro measurements
-
Estojak J, Brent R, Golemis EA. (1995) Correlation of two-hybrid affinity data with in vitro measurements. Mol Cell Biol 15, 5820-9.
-
(1995)
Mol Cell Biol
, vol.15
, pp. 5820-5829
-
-
Estojak, J.1
Brent, R.2
Golemis, E.A.3
-
33
-
-
58149218155
-
Empirically controlled mapping of the Caenorhabditis elegans protein-protein interactome network
-
Simonis N, Rual JF, Carvunis AR, et al. (2009) Empirically controlled mapping of the Caenorhabditis elegans protein-protein interactome network. Nat Methods 6, 47-54.
-
(2009)
Nat Methods
, vol.6
, pp. 47-54
-
-
Simonis, N.1
Rual, J.F.2
Carvunis, A.R.3
-
34
-
-
0037058609
-
Design and use of a mammalian protein-protein interaction trap (MAPPIT)
-
Eyckerman S, Lemmens I, Lievens S, et al. (2002) Design and use of a mammalian protein-protein interaction trap (MAPPIT). Sci STKE 2002, pl18.
-
(2002)
Sci STKE
, vol.2002
-
-
Eyckerman, S.1
Lemmens, I.2
Lievens, S.3
-
35
-
-
33751395622
-
The value of high quality protein-protein interaction networks for systems biology
-
Stelzl U, Wanker EE. (2006) The value of high quality protein-protein interaction networks for systems biology. Curr Opin Chem Biol 10, 551-8.
-
(2006)
Curr Opin Chem Biol
, vol.10
, pp. 551-558
-
-
Stelzl, U.1
Wanker, E.E.2
-
37
-
-
63849310190
-
The Cartographers toolbox: Building bigger and better human protein interaction networks
-
Sanderson CM. (2009) The Cartographers toolbox: building bigger and better human protein interaction networks. Brief Funct Genomic Proteomic 8, 1-11.
-
(2009)
Brief Funct Genomic Proteomic
, vol.8
, pp. 1-11
-
-
Sanderson, C.M.1
-
38
-
-
33846844989
-
HORFeome v3.1: A resource of human open reading frames representing over 10,000 human genes
-
Lamesch P, Li N, Milstein S, et al. (2007) hORFeome v3.1: a resource of human open reading frames representing over 10,000 human genes. Genomics 89, 307-15.
-
(2007)
Genomics
, vol.89
, pp. 307-315
-
-
Lamesch, P.1
Li, N.2
Milstein, S.3
-
39
-
-
57049126143
-
Human protein factory for converting the transcriptome into an in vitro-expressed proteome
-
Goshima N, Kawamura Y, Fukumoto A, et al. (2008) Human protein factory for converting the transcriptome into an in vitro-expressed proteome. Nat Methods 5, 1011-7.
-
(2008)
Nat Methods
, vol.5
, pp. 1011-1017
-
-
Goshima, N.1
Kawamura, Y.2
Fukumoto, A.3
-
40
-
-
73249119724
-
The completion of the Mammalian Gene Collection (MGC)
-
Temple G, Gerhard DS, Rasooly R, et al. (2009) The completion of the Mammalian Gene Collection (MGC). Genome Res 19, 2324-33.
-
(2009)
Genome Res
, vol.19
, pp. 2324-2333
-
-
Temple, G.1
Gerhard, D.S.2
Rasooly, R.3
-
41
-
-
0024558335
-
One-step preparation of competent Escherichia coli: Transformation and storage of bacterial cells in the same solution
-
Chung CT, Niemela SL, Miller RH. (1989) One-step preparation of competent Escherichia coli: transformation and storage of bacterial cells in the same solution. Proc Natl Acad Sci USA 86, 2172-5.
-
(1989)
Proc Natl Acad Sci USA
, vol.86
, pp. 2172-2175
-
-
Chung, C.T.1
Niemela, S.L.2
Miller, R.H.3
-
42
-
-
33646381658
-
A pooling-deconvolution strategy for biological network elucidation
-
Jin F, Hazbun T, Michaud GA, et al. (2006) A pooling-deconvolution strategy for biological network elucidation. Nat Methods 3, 183-9.
-
(2006)
Nat Methods
, vol.3
, pp. 183-189
-
-
Jin, F.1
Hazbun, T.2
Michaud, G.A.3
-
43
-
-
67650022867
-
Shifted transversal design smart-pooling for high coverage interactome mapping
-
Xin X, Rual JF, Hirozane-Kishikawa T, et al. (2009) Shifted Transversal Design smart-pooling for high coverage interactome mapping. Genome Res 19, 1262-9.
-
(2009)
Genome Res
, vol.19
, pp. 1262-1269
-
-
Xin, X.1
Rual, J.F.2
Hirozane-Kishikawa, T.3
-
44
-
-
4644306020
-
Analyzing protein function on a genomic scale: The importance of gold-standard positives and negatives for network prediction
-
Jansen R, Gerstein M. (2004) Analyzing protein function on a genomic scale: the importance of gold-standard positives and negatives for network prediction. Curr Opin Microbiol 7, 535-45.
-
(2004)
Curr Opin Microbiol
, vol.7
, pp. 535-545
-
-
Jansen, R.1
Gerstein, M.2
-
45
-
-
35348891430
-
Network-based classifi cation of breast cancer metastasis
-
Chuang HY, Lee E, Liu YT, Lee D, Ideker T. (2007) Network-based classifi cation of breast cancer metastasis. Mol Syst Biol 3, 140.
-
(2007)
Mol Syst Biol
, vol.3
, pp. 140
-
-
Chuang, H.Y.1
Lee, E.2
Liu, Y.T.3
Lee, D.4
Ideker, T.5
-
46
-
-
33947095027
-
A human phenome-interactome network of protein complexes implicated in genetic disorders
-
Lage K, Karlberg EO, Storling ZM, et al. (2007) A human phenome-interactome network of protein complexes implicated in genetic disorders. Nat Biotechnol 25, 309-16.
-
(2007)
Nat Biotechnol
, vol.25
, pp. 309-316
-
-
Lage, K.1
Karlberg, E.O.2
Storling, Z.M.3
-
47
-
-
41549139527
-
Walking the interactome for prioritization of candidate disease genes
-
Kohler S, Bauer S, Horn D, Robinson PN. (2008) Walking the interactome for prioritization of candidate disease genes. Am J Hum Genet 82, 949-58.
-
(2008)
Am J Hum Genet
, vol.82
, pp. 949-958
-
-
Kohler, S.1
Bauer, S.2
Horn, D.3
Robinson, P.N.4
-
48
-
-
59849125136
-
Dynamic modularity in protein interaction networks predicts breast cancer outcome
-
Taylor IW, Linding R, Warde-Farley D, et al. (2009) Dynamic modularity in protein interaction networks predicts breast cancer outcome. Nat Biotechnol 27, 199-204.
-
(2009)
Nat Biotechnol
, vol.27
, pp. 199-204
-
-
Taylor, I.W.1
Linding, R.2
Warde-Farley, D.3
-
49
-
-
35349024501
-
Network modeling links breast cancer susceptibility and centrosome dysfunction
-
Pujana MA, Han JD, Starita LM, et al. (2007) Network modeling links breast cancer susceptibility and centrosome dysfunction. Nat Genet 39, 1338-49.
-
(2007)
Nat Genet
, vol.39
, pp. 1338-1349
-
-
Pujana, M.A.1
Han, J.D.2
Starita, L.M.3
-
50
-
-
75149147806
-
Regulation of epidermal growth factor receptor traffi cking by lysine deacetylase HDAC6
-
Deribe YL, Wild P, Chandrashaker A, et al. (2009) Regulation of epidermal growth factor receptor traffi cking by lysine deacetylase HDAC6. Sci Signal 2, ra84.
-
(2009)
Sci Signal
, vol.2
-
-
Deribe, Y.L.1
Wild, P.2
Chandrashaker, A.3
-
51
-
-
33644674937
-
Identifi cation of VCP/p97, carboxyl terminus of Hsp70-interacting protein (CHIP), and amphiphysin II interaction partners using membrane-based human proteome arrays
-
Grelle G, Kostka S, Otto A, et al. (2006) Identifi cation of VCP/p97, carboxyl terminus of Hsp70-interacting protein (CHIP), and amphiphysin II interaction partners using membrane-based human proteome arrays. Mol Cell Proteomics 5, 234-44.
-
(2006)
Mol Cell Proteomics
, vol.5
, pp. 234-244
-
-
Grelle, G.1
Kostka, S.2
Otto, A.3
-
52
-
-
33845874433
-
Brain CHIP: Removing the culprits in neurodegenerative disease
-
Dickey CA, Patterson C, Dickson D, Petrucelli L. (2007) Brain CHIP: removing the culprits in neurodegenerative disease. Trends Mol Med 13, 32-8.
-
(2007)
Trends Mol Med
, vol.13
, pp. 32-8
-
-
Dickey, C.A.1
Patterson, C.2
Dickson, D.3
Petrucelli, L.4
-
53
-
-
46049113510
-
FKBP36 forms complexes with clathrin and Hsp72 in spermatocytes
-
Jarczowski F, Fischer G, Edlich F. (2008) FKBP36 forms complexes with clathrin and Hsp72 in spermatocytes. Biochemistry 47, 6946-52.
-
(2008)
Biochemistry
, vol.47
, pp. 6946-6952
-
-
Jarczowski, F.1
Fischer, G.2
Edlich, F.3
-
54
-
-
34250902930
-
Targeting the protein kinase C family: Are we there yet?
-
Mackay HJ, Twelves CJ. (2007) Targeting the protein kinase C family: are we there yet? Nat Rev Cancer 7, 554-62.
-
(2007)
Nat Rev Cancer
, vol.7
, pp. 554-562
-
-
MacKay, H.J.1
Twelves, C.J.2
-
55
-
-
64149103614
-
Protein kinase C intervention: The state of play
-
Roffey J, Rosse C, Linch M, Hibbert A, McDonald NQ, Parker PJ. (2009) Protein kinase C intervention: the state of play. Curr Opin Cell Biol 21, 268-79.
-
(2009)
Curr Opin Cell Biol
, vol.21
, pp. 268-279
-
-
Roffey, J.1
Rosse, C.2
Linch, M.3
Hibbert, A.4
McDonald, N.Q.5
Parker, P.J.6
|