-
1
-
-
0034708480
-
The genome sequence of Drosophila melanogaster
-
Adams, M.D., Celniker, S.E., Holt, R.A., Evans, C.A., Gocayne, J.D., Amanatides, P.G., Scherer, S.E., Li, P.W., Hoskins, R.A., Galle, R.F., et al. 2000. The genome sequence of Drosophila melanogaster. Science 287: 2185-2195.
-
(2000)
Science
, vol.287
, pp. 2185-2195
-
-
Adams, M.D.1
Celniker, S.E.2
Holt, R.A.3
Evans, C.A.4
Gocayne, J.D.5
Amanatides, P.G.6
Scherer, S.E.7
Li, P.W.8
Hoskins, R.A.9
Galle, R.F.10
-
2
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
Altschul, S.F., Madden, T.L., Schaffer, A.A., Zhang, J., Zhang, Z., Miller, W., and Lipman, D.J. 1997. Gapped BLAST and PSI-BLAST: A new generation of protein database search programs. Nucleic Acids Res. 25: 3389-3402.
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schaffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
3
-
-
0035166973
-
The InterPro database, an integrated documentation resource for protein families, domains and functional sites
-
Apweiler, R., Attwood, T.K., Bairoch, A., Bateman, A., Birney, E., Biswas, M., Bucher, P., Cerutti, L., Corpet, F., Croning, M.D., et al. 2001. The InterPro database, an integrated documentation resource for protein families, domains and functional sites. Nucleic Acids Res. 29: 37-40.
-
(2001)
Nucleic Acids Res.
, vol.29
, pp. 37-40
-
-
Apweiler, R.1
Attwood, T.K.2
Bairoch, A.3
Bateman, A.4
Birney, E.5
Biswas, M.6
Bucher, P.7
Cerutti, L.8
Corpet, F.9
Croning, M.D.10
-
4
-
-
0037805574
-
On ontologies for biologists: The Gene Ontology - Untangling the web. Novartis Found
-
discussion. 80-63, 84-90, 244-252
-
Ashburner, M. and Lewis, S. 2002. On ontologies for biologists: The Gene Ontology - untangling the web. Novartis Found. Symp. 247: 66-80; discussion 80-63, 84-90, 244-252.
-
(2002)
Symp.
, vol.247
, pp. 66-80
-
-
Ashburner, M.1
Lewis, S.2
-
5
-
-
12244277402
-
Myosin VIIa, harmonin and cadherin 23, three Usher I gene products that cooperate to shape the sensory hair cell bundle
-
Boeda, B., El-Amraoui, A., Bahloul, A., Goodyear, R., Daviet, L., Blanchard, S., Perfettini, I., Fath, K.R., Shorte, S., Reiners, J., et al. 2002. Myosin VIIa, harmonin and cadherin 23, three Usher I gene products that cooperate to shape the sensory hair cell bundle. EMBO J. 21: 6689-6699.
-
(2002)
EMBO J.
, vol.21
, pp. 6689-6699
-
-
Boeda, B.1
El-Amraoui, A.2
Bahloul, A.3
Goodyear, R.4
Daviet, L.5
Blanchard, S.6
Perfettini, I.7
Fath, K.R.8
Shorte, S.9
Reiners, J.10
-
6
-
-
0012340085
-
Finishing a whole-genome shotgun: Release 3 of the Drosophila melanogaster euchromatic genome sequence
-
RESEARCH0079
-
Celniker, S.E., Wheeler, D.A., Kronmiller, B., Carlson, J.W., Halpern, A., Patel, S., Adams, M., Champe, M., Dugan, S.P., Frise, E., et al. 2002. Finishing a whole-genome shotgun: Release 3 of the Drosophila melanogaster euchromatic genome sequence. Genome Biol. 3: RESEARCH0079.
-
(2002)
Genome Biol.
, vol.3
-
-
Celniker, S.E.1
Wheeler, D.A.2
Kronmiller, B.3
Carlson, J.W.4
Halpern, A.5
Patel, S.6
Adams, M.7
Champe, M.8
Dugan, S.P.9
Frise, E.10
-
7
-
-
3543143101
-
Functional proteomics mapping of a human signaling pathway
-
Colland, F., Jacq, X., Trouplin, V., Mougin, C., Groizeleau, C., Hamburger, A., Meil, A., Wojcik, J., Legrain, P., and Gauthier, J.M. 2004. Functional proteomics mapping of a human signaling pathway. Genome Res. 14: 1324-1332.
-
(2004)
Genome Res.
, vol.14
, pp. 1324-1332
-
-
Colland, F.1
Jacq, X.2
Trouplin, V.3
Mougin, C.4
Groizeleau, C.5
Hamburger, A.6
Meil, A.7
Wojcik, J.8
Legrain, P.9
Gauthier, J.M.10
-
8
-
-
0031978181
-
Base-calling of automated sequencer traces using phred. II. Error probabilities
-
Ewing, B. and Green, P. 1998. Base-calling of automated sequencer traces using phred. II. Error probabilities. Genome Res. 8: 186-194.
-
(1998)
Genome Res.
, vol.8
, pp. 186-194
-
-
Ewing, B.1
Green, P.2
-
9
-
-
0031955518
-
Base-calling of automated sequencer traces using phred. I. Accuracy assessment
-
Ewing, B., Hillier, L., Wendl, M.C., and Green, P. 1998. Base-calling of automated sequencer traces using phred. I. Accuracy assessment. Genome Res. 8: 175-185.
-
(1998)
Genome Res.
, vol.8
, pp. 175-185
-
-
Ewing, B.1
Hillier, L.2
Wendl, M.C.3
Green, P.4
-
10
-
-
0030963019
-
Toward a functional analysis of the yeast genome through exhaustive two-hybrid screens
-
Fromont-Racine, M., Rain, J.C., and Legrain, P. 1997. Toward a functional analysis of the yeast genome through exhaustive two-hybrid screens. Nat. Genet. 16: 277-282.
-
(1997)
Nat. Genet.
, vol.16
, pp. 277-282
-
-
Fromont-Racine, M.1
Rain, J.C.2
Legrain, P.3
-
11
-
-
0036270467
-
Building protein-protein networks by two-hybrid mating strategy
-
Fromont-Racine, M., Rain, J.C., and Legrain, P. 2002. Building protein-protein networks by two-hybrid mating strategy. Methods Enzymol. 350: 513-524.
-
(2002)
Methods Enzymol.
, vol.350
, pp. 513-524
-
-
Fromont-Racine, M.1
Rain, J.C.2
Legrain, P.3
-
12
-
-
0037050026
-
Functional organization of the yeast proteome by systematic analysis of protein complexes
-
Gavin, A.C., Bosche, M., Krause, R., Grandi, P., Marzioch, M., Bauer, A., Schultz, J., Rick, J.M., Michon, A.M., Cruciat, C.M., et al. 2002. Functional organization of the yeast proteome by systematic analysis of protein complexes. Nature 415: 141-147.
-
(2002)
Nature
, vol.415
, pp. 141-147
-
-
Gavin, A.C.1
Bosche, M.2
Krause, R.3
Grandi, P.4
Marzioch, M.5
Bauer, A.6
Schultz, J.7
Rick, J.M.8
Michon, A.M.9
Cruciat, C.M.10
-
13
-
-
0035733690
-
Correlation between transcriptome and interactome mapping data from Saccharomyces cerevisiae
-
Ge, H., Liu, Z., Church, G.M., and Vidal, M. 2001. Correlation between transcriptome and interactome mapping data from Saccharomyces cerevisiae. Nat. Genet. 29: 482-486.
-
(2001)
Nat. Genet.
, vol.29
, pp. 482-486
-
-
Ge, H.1
Liu, Z.2
Church, G.M.3
Vidal, M.4
-
14
-
-
0345600247
-
A protein interaction map of Drosophila melanogaster
-
Giot, L., Bader, J.S., Brouwer, C., Chaudhuri, A., Kuang, B., Li, Y., Hao, Y.L., Ooi, C.E., Godwin, B., Vitols, E., et al. 2003. A protein interaction map of Drosophila melanogaster. Science 302: 1727-1736.
-
(2003)
Science
, vol.302
, pp. 1727-1736
-
-
Giot, L.1
Bader, J.S.2
Brouwer, C.3
Chaudhuri, A.4
Kuang, B.5
Li, Y.6
Hao, Y.L.7
Ooi, C.E.8
Godwin, B.9
Vitols, E.10
-
15
-
-
0242317678
-
On the number of protein-protein interactions in the yeast proteome
-
Grigoriev, A. 2003. On the number of protein-protein interactions in the yeast proteome. Nucleic Acids Res. 31: 4157-4161.
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 4157-4161
-
-
Grigoriev, A.1
-
16
-
-
0742323374
-
The HUPO PSI's Molecular Interaction format - A community standard for the representation of protein interaction data
-
Hermjakob, H., Montecchi-Palazzi, L., Bader, G., Wojcik, J., Salwinski, L., Ceol, A., Moore, S., Orchard, S., Sarkans, U., Von Mering, C., et al. 2004. The HUPO PSI's Molecular Interaction format - A community standard for the representation of protein interaction data. Nat. Biotechnol. 22: 177-183.
-
(2004)
Nat. Biotechnol.
, vol.22
, pp. 177-183
-
-
Hermjakob, H.1
Montecchi-Palazzi, L.2
Bader, G.3
Wojcik, J.4
Salwinski, L.5
Ceol, A.6
Moore, S.7
Orchard, S.8
Sarkans, U.9
Von Mering, C.10
-
17
-
-
0032849859
-
CAP3: A DNA sequence assembly program
-
Huang, X. and Madan, A. 1999. CAP3: A DNA sequence assembly program. Genome Res. 9: 868-877.
-
(1999)
Genome Res.
, vol.9
, pp. 868-877
-
-
Huang, X.1
Madan, A.2
-
18
-
-
0035836765
-
A comprehensive two-hybrid analysis to explore the yeast protein interactome
-
Ito, T., Chiba, T., Ozawa, R., Yoshida, M., Hattori, M., and Sakaki, Y. 2001. A comprehensive two-hybrid analysis to explore the yeast protein interactome. Proc. Natl. Acad. Sci. 98: 4569-4574.
-
(2001)
Proc. Natl. Acad. Sci.
, vol.98
, pp. 4569-4574
-
-
Ito, T.1
Chiba, T.2
Ozawa, R.3
Yoshida, M.4
Hattori, M.5
Sakaki, Y.6
-
19
-
-
0037133034
-
Identification of a novel Ras-regulated proapoptotic pathway
-
Khokhlatchev, A., Rabizadeh, S., Xavier, R., Nedwidek, M., Chen, T., Zhang, X.F., Seed, B., and Avruch, J. 2002. Identification of a novel Ras-regulated proapoptotic pathway. Curr. Biol. 12: 253-265.
-
(2002)
Curr. Biol.
, vol.12
, pp. 253-265
-
-
Khokhlatchev, A.1
Rabizadeh, S.2
Xavier, R.3
Nedwidek, M.4
Chen, T.5
Zhang, X.F.6
Seed, B.7
Avruch, J.8
-
20
-
-
0035910270
-
Predicting transmembrane protein topology with a hidden Markov model: Application to complete genomes
-
Krogh, A., Larsson, B., von Heijne, G., and Sonnhammer, E.L. 2001. Predicting transmembrane protein topology with a hidden Markov model: Application to complete genomes. J. Mol. Biol. 305: 567-580.
-
(2001)
J. Mol. Biol.
, vol.305
, pp. 567-580
-
-
Krogh, A.1
Larsson, B.2
von Heijne, G.3
Sonnhammer, E.L.4
-
21
-
-
14744270216
-
A first-draft human protein-interaction map
-
Lehner, B. and Fraser, A.G. 2004. A first-draft human protein-interaction map. Genome Biol. 5: R63.
-
(2004)
Genome Biol.
, vol.5
-
-
Lehner, B.1
Fraser, A.G.2
-
22
-
-
9144264169
-
A map of the interactome network of the metazoan C. elegans
-
Li, S., Armstrong, C.M., Bertin, N., Ge, H., Milstein, S., Boxem, M., Vidalain, P.O., Han, J.D., Chesneau, A., Hao, T., et al. 2004. A map of the interactome network of the metazoan C. elegans. Science 303: 540-543.
-
(2004)
Science
, vol.303
, pp. 540-543
-
-
Li, S.1
Armstrong, C.M.2
Bertin, N.3
Ge, H.4
Milstein, S.5
Boxem, M.6
Vidalain, P.O.7
Han, J.D.8
Chesneau, A.9
Hao, T.10
-
23
-
-
0002636459
-
Annotation of the Drosophila melanogaster euchromatic genome: A systematic review
-
RESEARCH0083
-
Misra, S., Crosby, M.A., Mungall, C.J., Matthews, B.B., Campbell, K.S., Hradecky, P., Huang, Y., Kaminker, J.S., Millburn, G.H., Prochnik, S.E., et al. 2002. Annotation of the Drosophila melanogaster euchromatic genome: A systematic review. Genome Biol. 3: RESEARCH0083.
-
(2002)
Genome Biol.
, vol.3
-
-
Misra, S.1
Crosby, M.A.2
Mungall, C.J.3
Matthews, B.B.4
Campbell, K.S.5
Hradecky, P.6
Huang, Y.7
Kaminker, J.S.8
Millburn, G.H.9
Prochnik, S.E.10
-
24
-
-
0031240609
-
A neural network method for identification of prokaryotic and eukaryotic signal pepticles and prediction of their cleavage sites
-
Nielsen, H., Engelbrecht, J., Brunak, S., and von Heijne, G. 1997. A neural network method for identification of prokaryotic and eukaryotic signal pepticles and prediction of their cleavage sites. Int. J. Neural Syst. 8: 581-599.
-
(1997)
Int. J. Neural Syst.
, vol.8
, pp. 581-599
-
-
Nielsen, H.1
Engelbrecht, J.2
Brunak, S.3
von Heijne, G.4
-
25
-
-
0035843145
-
The protein-protein interaction map of Helicobacter pylori
-
Rain, J.C., Selig, L., De Reuse, H., Battaglia, V., Reverdy, C., Simon, S., Lenzen, G., Petel, F., Wojcik, J., Schachter, V., et al. 2001. The protein-protein interaction map of Helicobacter pylori. Nature 409: 211-215.
-
(2001)
Nature
, vol.409
, pp. 211-215
-
-
Rain, J.C.1
Selig, L.2
De Reuse, H.3
Battaglia, V.4
Reverdy, C.5
Simon, S.6
Lenzen, G.7
Petel, F.8
Wojcik, J.9
Schachter, V.10
-
26
-
-
0031463020
-
Signal transduction downstream from Ras in Drosophila
-
Rubin, G.M., Chang, H.C., Karim, F., Laverty, T., Michaud, N.R., Morrison, D.K., Rebay, I., Tang, A., Therrien, M., and Wassarman, D.A. 1997. Signal transduction downstream from Ras in Drosophila. Cold Spring Harb. Symp. Quant. Biol. 62: 347-352.
-
(1997)
Cold Spring Harb. Symp. Quant. Biol.
, vol.62
, pp. 347-352
-
-
Rubin, G.M.1
Chang, H.C.2
Karim, F.3
Laverty, T.4
Michaud, N.R.5
Morrison, D.K.6
Rebay, I.7
Tang, A.8
Therrien, M.9
Wassarman, D.A.10
-
27
-
-
0345526420
-
A novel interaction motif, SARAH, connects three classes of tumor suppressor
-
Scheel, H. and Hofmann, K. 2003. A novel interaction motif, SARAH, connects three classes of tumor suppressor. Curr. Biol. 13: R899-R900.
-
(2003)
Curr. Biol.
, vol.13
-
-
Scheel, H.1
Hofmann, K.2
-
28
-
-
14844329503
-
A Drosophila protein-interaction map centered on cell-cycle regulators
-
Stanyon, C.A., Liu, G., Mangiola, B.A., Patel, N., Giot, L., Kuang, B., Zhang, H., Zhong, J., and Finley Jr., R.L. 2004. A Drosophila protein-interaction map centered on cell-cycle regulators. Genome Biol. 5: R96.
-
(2004)
Genome Biol.
, vol.5
-
-
Stanyon, C.A.1
Liu, G.2
Mangiola, B.A.3
Patel, N.4
Giot, L.5
Kuang, B.6
Zhang, H.7
Zhong, J.8
Finley Jr., R.L.9
-
29
-
-
4444378917
-
Biochemical characterization of protein complexes from the Helicobacter pylori protein interaction map: Strategies for complex formation and evidence for novel interactions within type IV secretion systems
-
Terradot, L., Durnell, N., Li, M., Ory, J., Labigne, A., Legrain, P., Colland, F., and Waksman, G. 2004. Biochemical characterization of protein complexes from the Helicobacter pylori protein interaction map: Strategies for complex formation and evidence for novel interactions within type IV secretion systems. Mol. Cell Proteomics 3: 809-819.
-
(2004)
Mol. Cell. Proteomics
, vol.3
, pp. 809-819
-
-
Terradot, L.1
Durnell, N.2
Li, M.3
Ory, J.4
Labigne, A.5
Legrain, P.6
Colland, F.7
Waksman, G.8
-
30
-
-
0034628508
-
A comprehensive analysis of protein-protein interactions in Saccharomyces cerevisiae
-
Uetz, P., Giot, L., Cagney, G., Mansfield, T,A., Judson, R.S., Knight, J.R., Lockshon, D., Narayan, V., Srinivasan, M., Pochart, P., et al. 2000. A comprehensive analysis of protein-protein interactions in Saccharomyces cerevisiae. Nature 403: 623-627.
-
(2000)
Nature
, vol.403
, pp. 623-627
-
-
Uetz, P.1
Giot, L.2
Cagney, G.3
Mansfield, T.A.4
Judson, R.S.5
Knight, J.R.6
Lockshon, D.7
Narayan, V.8
Srinivasan, M.9
Pochart, P.10
-
31
-
-
0029099409
-
Ras-Raf interaction: Two-hybrid analysis
-
Vojtek, A.B. and Hollenberg, S.M. 1995. Ras-Raf interaction: Two-hybrid analysis. Methods Enzymol. 255: 331-342.
-
(1995)
Methods Enzymol.
, vol.255
, pp. 331-342
-
-
Vojtek, A.B.1
Hollenberg, S.M.2
-
32
-
-
0034680870
-
Ras uses the novel tumor suppressor RASSF1 as an effector to mediate apoptosis
-
Vos, M.D., Ellis, C.A., Bell, A., Birrer, M.J., and Clark, G.J. 2000. Ras uses the novel tumor suppressor RASSF1 as an effector to mediate apoptosis. J. Biol. Chem. 275: 35669-35672.
-
(2000)
J. Biol. Chem.
, vol.275
, pp. 35669-35672
-
-
Vos, M.D.1
Ellis, C.A.2
Bell, A.3
Birrer, M.J.4
Clark, G.J.5
-
33
-
-
0034614678
-
Protein interaction mapping in C. elegans using proteins involved in vulval development
-
Walhout, A.J., Sordella, R., Lu, X., Hartley, J.L., Temple, G.F., Brasch, M.A., Thierry-Mieg, N., and Vidal, M. 2000. Protein interaction mapping in C. elegans using proteins involved in vulval development. Science 287: 116-122.
-
(2000)
Science
, vol.287
, pp. 116-122
-
-
Walhout, A.J.1
Sordella, R.2
Lu, X.3
Hartley, J.L.4
Temple, G.F.5
Brasch, M.A.6
Thierry-Mieg, N.7
Vidal, M.8
-
34
-
-
0036142091
-
The RAS effector RIN1 directly competes with RAF and is regulated by 14-3-3 proteins
-
Wang, Y., Waldron, R.T., Dhaka, A., Patel, A., Riley, M.M., Rozengurt, E., and Colicelli, J. 2002. The RAS effector RIN1 directly competes with RAF and is regulated by 14-3-3 proteins. Mol. Cell. Biol. 22: 916-926.
-
(2002)
Mol. Cell. Biol.
, vol.22
, pp. 916-926
-
-
Wang, Y.1
Waldron, R.T.2
Dhaka, A.3
Patel, A.4
Riley, M.M.5
Rozengurt, E.6
Colicelli, J.7
-
35
-
-
0344758986
-
Regulation of cell polarity and protrusion formation by targeting RhoA for degradation
-
Wang, H.R,, Zhang, Y., Ozdamar, B., Ogunjimi, A.A., Alexandrova, E., Thomsen, G.H., and Wrana, J.L. 2003. Regulation of cell polarity and protrusion formation by targeting RhoA for degradation. Science 302: 1775-1779.
-
(2003)
Science
, vol.302
, pp. 1775-1779
-
-
Wang, H.R.1
Zhang, Y.2
Ozdamar, B.3
Ogunjimi, A.A.4
Alexandrova, E.5
Thomsen, G.H.6
Wrana, J.L.7
-
36
-
-
0036974250
-
Prediction, assessment and validation of protein interaction maps in bacteria
-
Wojcik, J., Boneca, I.G., and Legrain, P. 2002. Prediction, assessment and validation of protein interaction maps in bacteria. J. Mol. Biol. 323: 763-770.
-
(2002)
J. Mol. Biol.
, vol.323
, pp. 763-770
-
-
Wojcik, J.1
Boneca, I.G.2
Legrain, P.3
|