메뉴 건너뛰기




Volumn 19, Issue 7, 2009, Pages 1262-1269

Shifted Transversal Design smart-pooling for high coverage interactome mapping

Author keywords

[No Author keywords available]

Indexed keywords

ALGORITHM; ARTICLE; CAENORHABDITIS ELEGANS; CONTROLLED STUDY; COST BENEFIT ANALYSIS; GENE INTERACTION; GENE LIBRARY; GENE MAPPING; GENE POOL; GENE SEQUENCE; HIGH THROUGHPUT SCREENING; INTERMETHOD COMPARISON; NONHUMAN; OPEN READING FRAME; PRIORITY JOURNAL; SENSITIVITY AND SPECIFICITY; SHIFTED TRANSVERSAL DESIGN; TWO HYBRID SYSTEM; WORKLOAD; YEAST;

EID: 67650022867     PISSN: 10889051     EISSN: 15495469     Source Type: Journal    
DOI: 10.1101/gr.090019.108     Document Type: Article
Times cited : (33)

References (24)
  • 1
    • 0742305866 scopus 로고    scopus 로고
    • Network biology: Understanding the cell's functional organization
    • Barabasi AL, Oltvai ZN. 2004. Network biology: Understanding the cell's functional organization. Nat Rev Genet 5: 101-113.
    • (2004) Nat Rev Genet , vol.5 , pp. 101-113
    • Barabasi, A.L.1    Oltvai, Z.N.2
  • 5
    • 0035836765 scopus 로고    scopus 로고
    • A comprehensive two-hybrid analysis to explore the yeast protein interactome
    • Ito T, Chiba T, Ozawa R, Yoshida M, Hattori M, Sakaki Y. 2001. A comprehensive two-hybrid analysis to explore the yeast protein interactome. Proc Natl Acad Sci 98: 4569-4574.
    • (2001) Proc Natl Acad Sci , vol.98 , pp. 4569-4574
    • Ito, T.1    Chiba, T.2    Ozawa, R.3    Yoshida, M.4    Hattori, M.5    Sakaki, Y.6
  • 7
    • 34250170441 scopus 로고    scopus 로고
    • A yeast two-hybrid smart-pool-array system for protein-interaction mapping
    • Jin F, Avramova L, Huang J, Hazbun T. 2007. A yeast two-hybrid smart-pool-array system for protein-interaction mapping. Nat Methods 4: 405-407.
    • (2007) Nat Methods , vol.4 , pp. 405-407
    • Jin, F.1    Avramova, L.2    Huang, J.3    Hazbun, T.4
  • 8
    • 46049118408 scopus 로고    scopus 로고
    • poolHiTS: A shifted transversal design based pooling strategy for high-throughput drug screening
    • doi: 10.1186/1471-2105-9-256
    • Kainkaryam RM, Woolf PJ. 2008. poolHiTS: A shifted transversal design based pooling strategy for high-throughput drug screening. BMC Bioinformatics 9: 256. doi: 10.1186/1471-2105-9-256.
    • (2008) BMC Bioinformatics , vol.9 , pp. 256
    • Kainkaryam, R.M.1    Woolf, P.J.2
  • 9
    • 7444220617 scopus 로고    scopus 로고
    • Lamesch P, Milstein S, Hao T, Rosenberg J, Li N, Sequerra R, Bosak S, Doucette-Stamm L, Vandenhaute J, Hill DE, et al. 2004. C. elegans ORFeome version 3.1: Increasing the coverage of ORFeome resources with improved gene predictions. Genome Res 14: 2064-2069
    • Lamesch P, Milstein S, Hao T, Rosenberg J, Li N, Sequerra R, Bosak S, Doucette-Stamm L, Vandenhaute J, Hill DE, et al. 2004. C. elegans ORFeome version 3.1: Increasing the coverage of ORFeome resources with improved gene predictions. Genome Res 14: 2064-2069.
  • 10
    • 0038708337 scopus 로고    scopus 로고
    • Reboul J, Vaglio P, Rual JF, Lamesch P, Martinez M, Armstrong CM, Li S, Jacotot L, Bertin N, Janky R, et al. 2003. C. elegans ORFeome version 1.1: Experimental verification of the genome annotation and resource for proteome-scale protein expression. Nat Genet 34: 35-41
    • Reboul J, Vaglio P, Rual JF, Lamesch P, Martinez M, Armstrong CM, Li S, Jacotot L, Bertin N, Janky R, et al. 2003. C. elegans ORFeome version 1.1: Experimental verification of the genome annotation and resource for proteome-scale protein expression. Nat Genet 34: 35-41.
  • 11
    • 0027408247 scopus 로고
    • Identification of a ten-amino acid proline-rich SH3 binding site
    • Ren R, Mayer BJ, Cicchetti P, Baltimore D. 1993. Identification of a ten-amino acid proline-rich SH3 binding site. Science 259: 1157-1161.
    • (1993) Science , vol.259 , pp. 1157-1161
    • Ren, R.1    Mayer, B.J.2    Cicchetti, P.3    Baltimore, D.4
  • 14
    • 33645151681 scopus 로고    scopus 로고
    • A new pooling strategy for high-throughput screening: The shifted transversal design
    • doi: 10.1186/1471-2105-7-28
    • Thierry-Mieg N. 2006a. A new pooling strategy for high-throughput screening: The shifted transversal design. BMC Bioinformatics 7: 28. doi: 10.1186/1471-2105-7-28.
    • (2006) BMC Bioinformatics , vol.7 , pp. 28
    • Thierry-Mieg, N.1
  • 15
    • 33646352970 scopus 로고    scopus 로고
    • Pooling in systems biology becomes smart
    • Thierry-Mieg N. 2006b. Pooling in systems biology becomes smart. Nat Methods 3: 161-162.
    • (2006) Nat Methods , vol.3 , pp. 161-162
    • Thierry-Mieg, N.1
  • 16
    • 40049095112 scopus 로고    scopus 로고
    • Interpool: Interpreting smart-pooling results
    • Thierry-Mieg N, Bailly G. 2008. Interpool: Interpreting smart-pooling results. Bioinformatics 24: 696-703.
    • (2008) Bioinformatics , vol.24 , pp. 696-703
    • Thierry-Mieg, N.1    Bailly, G.2
  • 22
    • 46049095682 scopus 로고    scopus 로고
    • Deconvoluting BAC-gene relationships using a physical map
    • Wu Y, Liu L, Close TJ, Lonardi S. 2008. Deconvoluting BAC-gene relationships using a physical map. J Bioinform Comput Biol 6: 603-622.
    • (2008) J Bioinform Comput Biol , vol.6 , pp. 603-622
    • Wu, Y.1    Liu, L.2    Close, T.J.3    Lonardi, S.4
  • 24
    • 0346752097 scopus 로고    scopus 로고
    • A strategy for constructing large protein interaction maps using the yeast two-hybrid system: Regulated expression arrays and two-phase mating
    • Zhong J, Zhang H, Stanyon CA, Tromp G, Finley RL Jr. 2003. A strategy for constructing large protein interaction maps using the yeast two-hybrid system: Regulated expression arrays and two-phase mating. Genome Res 13: 2691-2699.
    • (2003) Genome Res , vol.13 , pp. 2691-2699
    • Zhong, J.1    Zhang, H.2    Stanyon, C.A.3    Tromp, G.4    Finley Jr., R.L.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.