-
2
-
-
0034628508
-
A comprehensive analysis of protein-protein interactions in Saccharomyces cerevisiae
-
Uetz P, Giot L, Cagney G, et al. A comprehensive analysis of protein-protein interactions in Saccharomyces cerevisiae. Nature 2000; 403:623-627.
-
(2000)
Nature
, vol.403
, pp. 623-627
-
-
Uetz, P.1
Giot, L.2
Cagney, G.3
-
4
-
-
0037050004
-
Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometry
-
Ho Y, Gruhler A, Heilbut A, et al. Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometry. Nature 2002; 415:180-183.
-
(2002)
Nature
, vol.415
, pp. 180-183
-
-
Ho, Y.1
Gruhler, A.2
Heilbut, A.3
-
5
-
-
33644555054
-
Proteome survey reveals modularity of the yeast cell machinery
-
Gavin AC, Aloy P, Grandi P, et al. Proteome survey reveals modularity of the yeast cell machinery. Nature 2006; 440:631-636.
-
(2006)
Nature
, vol.440
, pp. 631-636
-
-
Gavin, A.C.1
Aloy, P.2
Grandi, P.3
-
6
-
-
0037050026
-
Functional organization of the yeast proteome by systematic analysis of protein complexes
-
Gavin AC, Bosche M, Krause R, et al. Functional organization of the yeast proteome by systematic analysis of protein complexes. Nature 2002; 415:141-147.
-
(2002)
Nature
, vol.415
, pp. 141-147
-
-
Gavin, A.C.1
Bosche, M.2
Krause, R.3
-
7
-
-
33645453254
-
Global landscape of protein complexes in the yeast Saccharomyces cerevisiae
-
Krogan NJ, Cagney G, Yu H, et al. Global landscape of protein complexes in the yeast Saccharomyces cerevisiae. Nature 2006; 440:637-643.
-
(2006)
Nature
, vol.440
, pp. 637-643
-
-
Krogan, N.J.1
Cagney, G.2
Yu, H.3
-
8
-
-
33846080260
-
A systems biology analysis of the Drosophila phagosome
-
Stuart LM, Boulais J, Charriere GM, et al. A systems biology analysis of the Drosophila phagosome. Nature 2007; 445:95-101.
-
(2007)
Nature
, vol.445
, pp. 95-101
-
-
Stuart, L.M.1
Boulais, J.2
Charriere, G.M.3
-
9
-
-
0035843145
-
The protein-protein interaction map of Helicobacter pylori
-
Rain JC, Selig L, De Reuse H, et al. The protein-protein interaction map of Helicobacter pylori. Nature 2001; 409:211-215.
-
(2001)
Nature
, vol.409
, pp. 211-215
-
-
Rain, J.C.1
Selig, L.2
De Reuse, H.3
-
10
-
-
0037137446
-
Integrating interactome, phenome, and transcriptome mapping data for the C. elegans germline
-
Walhout AJ, Reboul J, Shtanko O, et al. Integrating interactome, phenome, and transcriptome mapping data for the C. elegans germline. Curr Biol 2002; 12:1952-1958.
-
(2002)
Curr Biol
, vol.12
, pp. 1952-1958
-
-
Walhout, A.J.1
Reboul, J.2
Shtanko, O.3
-
11
-
-
0034614678
-
Protein interaction mapping in C. elegans using proteins involved in vulval development
-
Walhout AJ, Sordella R, Lu X, et al. Protein interaction mapping in C. elegans using proteins involved in vulval development. Science 2000; 287:116-122.
-
(2000)
Science
, vol.287
, pp. 116-122
-
-
Walhout, A.J.1
Sordella, R.2
Lu, X.3
-
12
-
-
39749105401
-
A Large-scale protein protein interaction analysis in Synechocystis sp. PCC6803
-
Sato S, Shimoda Y, Muraki A, et al. A Large-scale protein protein interaction analysis in Synechocystis sp. PCC6803. DNA Res 2007; 14:207-216.
-
(2007)
DNA Res
, vol.14
, pp. 207-216
-
-
Sato, S.1
Shimoda, Y.2
Muraki, A.3
-
13
-
-
20144372620
-
High-throughput mapping of a dynamic signaling network in mammalian cells
-
Barrios-Rodiles M, Brown KR, Ozdamar B, et al. High-throughput mapping of a dynamic signaling network in mammalian cells. Science 2005; 307:1621-1625.
-
(2005)
Science
, vol.307
, pp. 1621-1625
-
-
Barrios-Rodiles, M.1
Brown, K.R.2
Ozdamar, B.3
-
14
-
-
27144530248
-
Towards a proteome-scale map of the human protein-protein interaction network
-
Rual JF, Venkatesan K, Hao T, et al. Towards a proteome-scale map of the human protein-protein interaction network. Nature 2005; 437:1173-1178.
-
(2005)
Nature
, vol.437
, pp. 1173-1178
-
-
Rual, J.F.1
Venkatesan, K.2
Hao, T.3
-
15
-
-
12144289400
-
A physical and functional map of the human TNF-alpha/NF-kappa B signal transduction pathway
-
Bouwmeester T, Bauch A, Ruffner H, et al. A physical and functional map of the human TNF-alpha/NF-kappa B signal transduction pathway. Nat Cell Biol 2004 6:97-105.
-
(2004)
Nat Cell Biol
, vol.6
, pp. 97-105
-
-
Bouwmeester, T.1
Bauch, A.2
Ruffner, H.3
-
16
-
-
33947219266
-
Large-scale mapping of human protein-protein interactions by mass spectrometry
-
Ewing RM, Chu P, Elisma F, et al. Large-scale mapping of human protein-protein interactions by mass spectrometry. Mol Syst Biol 2007; 3:89.
-
(2007)
Mol Syst Biol
, vol.3
, pp. 89
-
-
Ewing, R.M.1
Chu, P.2
Elisma, F.3
-
17
-
-
33646687963
-
A protein-protein interaction network for human inherited ataxias and disorders of Purkinje cell degeneration
-
Lim J, Hao T, Shaw C, et al. A protein-protein interaction network for human inherited ataxias and disorders of Purkinje cell degeneration. Cell 2006; 125:801-814.
-
(2006)
Cell
, vol.125
, pp. 801-814
-
-
Lim, J.1
Hao, T.2
Shaw, C.3
-
19
-
-
3543143101
-
Functional proteomics mapping of a human signaling pathway
-
Colland F, Jacq X, Trouplin V, et al. Functional proteomics mapping of a human signaling pathway. Genome Res 2004; 14:1324-1332.
-
(2004)
Genome Res
, vol.14
, pp. 1324-1332
-
-
Colland, F.1
Jacq, X.2
Trouplin, V.3
-
20
-
-
0034774617
-
A protein-protein interaction map of the Caenorhabditis elegans 26S proteasome
-
Davy A, Bello P, Thierry-Mieg N, et al. A protein-protein interaction map of the Caenorhabditis elegans 26S proteasome. EMBO Rep 2001; 2:821-828.
-
(2001)
EMBO Rep
, vol.2
, pp. 821-828
-
-
Davy, A.1
Bello, P.2
Thierry-Mieg, N.3
-
21
-
-
33746665218
-
Mapping protein-protein interactions by mass spectrometry
-
Vasilescu J, Figeys D. Mapping protein-protein interactions by mass spectrometry. Curr Opin Biotechnol 2006; 17:394-399.
-
(2006)
Curr Opin Biotechnol
, vol.17
, pp. 394-399
-
-
Vasilescu, J.1
Figeys, D.2
-
22
-
-
0024406857
-
A Novel Genetic System to Detect Protein-Protein Interactions
-
Fields S, Song O. A Novel Genetic System to Detect Protein-Protein Interactions. Nature 1989; 340:245-246.
-
(1989)
Nature
, vol.340
, pp. 245-246
-
-
Fields, S.1
Song, O.2
-
23
-
-
25144498379
-
A human protein-protein interaction network: A resource for annotating the proteome
-
Stelzl U, Worm U, Lalowski M, et al. A human protein-protein interaction network: a resource for annotating the proteome. Cell 2005; 122:957-968.
-
(2005)
Cell
, vol.122
, pp. 957-968
-
-
Stelzl, U.1
Worm, U.2
Lalowski, M.3
-
24
-
-
0037161731
-
Comparative assessment of large-scale data sets of protein-protein interactions
-
von Mering C, Krause R, Snel B, et al. Comparative assessment of large-scale data sets of protein-protein interactions. Nature 2002; 417:399-403.
-
(2002)
Nature
, vol.417
, pp. 399-403
-
-
von Mering, C.1
Krause, R.2
Snel, B.3
-
25
-
-
34047168855
-
Comparison of human protein-protein interaction maps
-
Futschik ME, Chaurasia G, Herzel H. Comparison of human protein-protein interaction maps. Bioinformatics 2007; 23:605-611.
-
(2007)
Bioinformatics
, vol.23
, pp. 605-611
-
-
Futschik, M.E.1
Chaurasia, G.2
Herzel, H.3
-
26
-
-
33847064282
-
Comprehensive curation and analysis of global interaction networks in Saccharomyces cerevisiae
-
Reguly T, Breitkreutz A, Boucher L, et al. Comprehensive curation and analysis of global interaction networks in Saccharomyces cerevisiae. J Biol 2006; 5:11.,
-
(2006)
J Biol
, vol.5
, pp. 11
-
-
Reguly, T.1
Breitkreutz, A.2
Boucher, L.3
-
27
-
-
33846844989
-
hORFeome v3.1: A resource of human open reading frames representing over 10,000 human genes
-
Lamesch P, Li N, Milstein S, et al. hORFeome v3.1: a resource of human open reading frames representing over 10,000 human genes. Genomics 2007; 89:307-315.
-
(2007)
Genomics
, vol.89
, pp. 307-315
-
-
Lamesch, P.1
Li, N.2
Milstein, S.3
-
28
-
-
0010656061
-
Exploring the protein interactome using comprehensive two-hybrid projects
-
Ito T, Chiba T, Yoshida M. Exploring the protein interactome using comprehensive two-hybrid projects. Trends Biotechnol 2001; 19:S23-S27.
-
(2001)
Trends Biotechnol
, vol.19
-
-
Ito, T.1
Chiba, T.2
Yoshida, M.3
-
29
-
-
0033974688
-
Toward a protein-protein interaction map of the budding yeast: A comprehensive system to examine two-hybrid interactions in all possible combinations between the yeast proteins
-
Ito T, Tashiro K, Muta S, et al. Toward a protein-protein interaction map of the budding yeast: A comprehensive system to examine two-hybrid interactions in all possible combinations between the yeast proteins. Proc Natl Acad Sci USA 2000; 97:1143-1147.
-
(2000)
Proc Natl Acad Sci USA
, vol.97
, pp. 1143-1147
-
-
Ito, T.1
Tashiro, K.2
Muta, S.3
-
30
-
-
0034854563
-
High-throughput yeast two-hybrid assays for large-scale protein interaction mapping
-
Walhout AJ, Vidal M. High-throughput yeast two-hybrid assays for large-scale protein interaction mapping. Methods 2001; 24:297-306.
-
(2001)
Methods
, vol.24
, pp. 297-306
-
-
Walhout, A.J.1
Vidal, M.2
-
31
-
-
9144264169
-
A map of the interactome network of the metazoan C. elegans
-
Li S, Armstrong CM, Bertin N, et al. A map of the interactome network of the metazoan C. elegans. Science 2004; 303:540-543.
-
(2004)
Science
, vol.303
, pp. 540-543
-
-
Li, S.1
Armstrong, C.M.2
Bertin, N.3
-
32
-
-
1542345539
-
Increasing specificity in high-throughput yeast two-hybrid experiments
-
Vidalain PO, Boxem M, Ge H, Li S, Vidal M. Increasing specificity in high-throughput yeast two-hybrid experiments. Methods 2004; 32:363-370.
-
(2004)
Methods
, vol.32
, pp. 363-370
-
-
Vidalain, P.O.1
Boxem, M.2
Ge, H.3
Li, S.4
Vidal, M.5
-
33
-
-
34250170441
-
A yeast two-hybrid smart-pool-array system for protein-interaction mapping
-
Jin F, Avramova L, Huang J, Hazbun T. A yeast two-hybrid smart-pool-array system for protein-interaction mapping. Nat Methods 2007; 4:405-407.
-
(2007)
Nat Methods
, vol.4
, pp. 405-407
-
-
Jin, F.1
Avramova, L.2
Huang, J.3
Hazbun, T.4
-
34
-
-
0034854464
-
Mass spectrometry for the study of protein-protein interactions
-
Figeys D, McBroom LD, Moran MF. Mass spectrometry for the study of protein-protein interactions. Methods Mol Biol 2001; 24:230-239.
-
(2001)
Methods Mol Biol
, vol.24
, pp. 230-239
-
-
Figeys, D.1
McBroom, L.D.2
Moran, M.F.3
-
35
-
-
0032830367
-
A strategy for the characterization of protein interaction networks by mass spectrometry
-
Shevchenko A, Zachariae W. A strategy for the characterization of protein interaction networks by mass spectrometry. Biochem Soc Trans 1999; 27:549-554.
-
(1999)
Biochem Soc Trans
, vol.27
, pp. 549-554
-
-
Shevchenko, A.1
Zachariae, W.2
-
36
-
-
21044436632
-
Monoclonal versus polyclonal antibodies: Distinguishing characteristics, applications, and information resources
-
Lipman NS, Jackson LR, Trudel LJ, Weis-Garcia F. Monoclonal versus polyclonal antibodies: distinguishing characteristics, applications, and information resources. ILAR J 2005; 46:258-268.
-
(2005)
ILAR J
, vol.46
, pp. 258-268
-
-
Lipman, N.S.1
Jackson, L.R.2
Trudel, L.J.3
Weis-Garcia, F.4
-
37
-
-
29244477844
-
A human protein atlas for normal and cancer tissues based on antibody proteomics
-
Uhlen M, Bjorling E, Agaton C, et al. A human protein atlas for normal and cancer tissues based on antibody proteomics. Mol Cell Proteomics 2005; 4:1920-1932.
-
(2005)
Mol Cell Proteomics
, vol.4
, pp. 1920-1932
-
-
Uhlen, M.1
Bjorling, E.2
Agaton, C.3
-
38
-
-
20244365813
-
Simple protein complex purification and identification method for high-throughput mapping of protein interaction networks
-
Markillie LM, Lin CT, Adkins JN, et al. Simple protein complex purification and identification method for high-throughput mapping of protein interaction networks. J Proteome Res 2005; 4:268-274.
-
(2005)
J Proteome Res
, vol.4
, pp. 268-274
-
-
Markillie, L.M.1
Lin, C.T.2
Adkins, J.N.3
-
39
-
-
0032828715
-
A generic protein purification method for protein complex characterization and proteome exploration
-
Rigaut G, Shevchenko A, Rutz B, et al. A generic protein purification method for protein complex characterization and proteome exploration. Nat Biotechnol 1999; 17:1030-1032.
-
(1999)
Nat Biotechnol
, vol.17
, pp. 1030-1032
-
-
Rigaut, G.1
Shevchenko, A.2
Rutz, B.3
-
40
-
-
0034841844
-
The tandem affinity purification (TAP) method: A general procedure of protein complex purification
-
Puig O, Caspary F, Rigaut G, et al. The tandem affinity purification (TAP) method: a general procedure of protein complex purification. Methods 2001; 24:218-229.
-
(2001)
Methods
, vol.24
, pp. 218-229
-
-
Puig, O.1
Caspary, F.2
Rigaut, G.3
-
41
-
-
0028094123
-
Immunoaffinity purification of FLAG epitope-tagged bacterial alkaline phosphatase using a novel monoclonal antibody and peptide elution
-
Brizzard BL, Chubet RG, Vizard DL. Immunoaffinity purification of FLAG epitope-tagged bacterial alkaline phosphatase using a novel monoclonal antibody and peptide elution. Biotechniques 1994; 16:730-735.
-
(1994)
Biotechniques
, vol.16
, pp. 730-735
-
-
Brizzard, B.L.1
Chubet, R.G.2
Vizard, D.L.3
-
42
-
-
0037255597
-
Overview of tag protein fusions: From molecular and biochemical fundamentals to commercial systems
-
Terpe K. Overview of tag protein fusions: from molecular and biochemical fundamentals to commercial systems. Appl Microbiol Biotechnol 2003; 60:523-533.
-
(2003)
Appl Microbiol Biotechnol
, vol.60
, pp. 523-533
-
-
Terpe, K.1
-
43
-
-
0036691946
-
Roles for the two-hybrid system in exploration of the yeast protein interactome
-
Ito T, Ota K, Kubota H, et al. Roles for the two-hybrid system in exploration of the yeast protein interactome. Mol Cell Proteomics 2002; 1:561-566.
-
(2002)
Mol Cell Proteomics
, vol.1
, pp. 561-566
-
-
Ito, T.1
Ota, K.2
Kubota, H.3
-
44
-
-
33846881317
-
Utility of large-scale transiently transfected cells for cell-based high-throughput screens to identify transient receptor potential channel A1 (TRPA1) antagonists
-
Chen J, Lake MR, Sabet RS, et al. Utility of large-scale transiently transfected cells for cell-based high-throughput screens to identify transient receptor potential channel A1 (TRPA1) antagonists. J Biomol Screen 2007; 12:61-69.
-
(2007)
J Biomol Screen
, vol.12
, pp. 61-69
-
-
Chen, J.1
Lake, M.R.2
Sabet, R.S.3
-
45
-
-
20444399919
-
Optimisation and evaluation of a high-throughput mammalian protein expression system
-
Davies A, Greene A, Lullau E, Abbott WM. Optimisation and evaluation of a high-throughput mammalian protein expression system. Protein Expr Purif 2005; 42:111-121.
-
(2005)
Protein Expr Purif
, vol.42
, pp. 111-121
-
-
Davies, A.1
Greene, A.2
Lullau, E.3
Abbott, W.M.4
-
46
-
-
32544443306
-
Determinants of AQP6 trafficking to intracellular sites versus the plasma membrane in transfected mammalian cells
-
Beitz E, Liu K, Ikeda M, et al. Determinants of AQP6 trafficking to intracellular sites versus the plasma membrane in transfected mammalian cells. Biol Cell 2006; 98:101-109.
-
(2006)
Biol Cell
, vol.98
, pp. 101-109
-
-
Beitz, E.1
Liu, K.2
Ikeda, M.3
-
47
-
-
34447511473
-
Application of large-scale transiently transfected cells to functional assays of ion channels: Different targets and assay formats
-
Bianchi BR, Moreland RB, Faltynek CR, Chen J. Application of large-scale transiently transfected cells to functional assays of ion channels: different targets and assay formats. Assay Drug Dev Technol 2007; 5:417-424.
-
(2007)
Assay Drug Dev Technol
, vol.5
, pp. 417-424
-
-
Bianchi, B.R.1
Moreland, R.B.2
Faltynek, C.R.3
Chen, J.4
-
48
-
-
31744445957
-
Microarrays of lentiviruses for gene function screens in immortalized and primary cells
-
Bailey SN, Ali SM, Carpenter AE, Higgins CO, Sabatini DM. Microarrays of lentiviruses for gene function screens in immortalized and primary cells. Nat Methods 2006; 3:117-122.
-
(2006)
Nat Methods
, vol.3
, pp. 117-122
-
-
Bailey, S.N.1
Ali, S.M.2
Carpenter, A.E.3
Higgins, C.O.4
Sabatini, D.M.5
-
49
-
-
4644275337
-
Exogenous control of mammalian gene expression through modulation of RNA self-cleavage
-
Yen L, Svendsen J, Lee JS, et al. Exogenous control of mammalian gene expression through modulation of RNA self-cleavage. Nature 2004; 431:471-476.
-
(2004)
Nature
, vol.431
, pp. 471-476
-
-
Yen, L.1
Svendsen, J.2
Lee, J.S.3
-
50
-
-
33748469505
-
Exogenous control of mammalian gene expression via modulation of translational termination
-
Murphy GJ, Mostoslavsky G, Kotton DN, Mulligan RC. Exogenous control of mammalian gene expression via modulation of translational termination. Nat Med 2006; 12:1093-1099.
-
(2006)
Nat Med
, vol.12
, pp. 1093-1099
-
-
Murphy, G.J.1
Mostoslavsky, G.2
Kotton, D.N.3
Mulligan, R.C.4
-
51
-
-
33745623633
-
The dynamic alterations of H2AX complex during DNA repair detected by a proteomic approach reveal the critical roles of Ca(2+)/calmodulin in the ionizing radiation-induced cell cycle arrest
-
Du YC, Gu S, Zhou J, et al. The dynamic alterations of H2AX complex during DNA repair detected by a proteomic approach reveal the critical roles of Ca(2+)/calmodulin in the ionizing radiation-induced cell cycle arrest. Mol Cell Proteomics 2006; 5:1033-1044.
-
(2006)
Mol Cell Proteomics
, vol.5
, pp. 1033-1044
-
-
Du, Y.C.1
Gu, S.2
Zhou, J.3
-
52
-
-
33745004786
-
The human CENP-A centromeric nucleosome-associated complex
-
Foltz DR, Jansen LE, Black BE, et al. The human CENP-A centromeric nucleosome-associated complex. Nat Cell Biol 2006; 8:458-469.
-
(2006)
Nat Cell Biol
, vol.8
, pp. 458-469
-
-
Foltz, D.R.1
Jansen, L.E.2
Black, B.E.3
-
53
-
-
0348184963
-
ATP-driven exchange of histone H2AZ variant catalyzed by SWR1 chromatin remodeling complex
-
Mizuguchi G, Shen X, Landry J, et al. ATP-driven exchange of histone H2AZ variant catalyzed by SWR1 chromatin remodeling complex. Science 2004; 303:343-348.
-
(2004)
Science
, vol.303
, pp. 343-348
-
-
Mizuguchi, G.1
Shen, X.2
Landry, J.3
-
54
-
-
20144387067
-
The MIPS mammalian protein-protein interaction database
-
Pagel P, Kovac S, Oesterheld M, et al. The MIPS mammalian protein-protein interaction database. Bioinformatics 2005; 21:832-834.
-
(2005)
Bioinformatics
, vol.21
, pp. 832-834
-
-
Pagel, P.1
Kovac, S.2
Oesterheld, M.3
-
55
-
-
10744224197
-
Development of human protein reference database as an initial platform for approaching systems biology in humans
-
Peri S, Navarro JD, Amanchy R, et al. Development of human protein reference database as an initial platform for approaching systems biology in humans. Genome Res 2003; 13:2363-2371.
-
(2003)
Genome Res
, vol.13
, pp. 2363-2371
-
-
Peri, S.1
Navarro, J.D.2
Amanchy, R.3
-
56
-
-
38949210266
-
Human Proteinpedia enables sharing of human protein data
-
Mathivanan S, Ahmed M, Ahn NG, et al. Human Proteinpedia enables sharing of human protein data. Nat Biotechnol 2008; 26:164-167.
-
(2008)
Nat Biotechnol
, vol.26
, pp. 164-167
-
-
Mathivanan, S.1
Ahmed, M.2
Ahn, N.G.3
-
57
-
-
0037245913
-
BIND: The Biomolecular Interaction Network Database
-
Bader GD, Betel D, Hogue CW. BIND: the Biomolecular Interaction Network Database. Nucleic Acids Res 2003 31:248-250.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 248-250
-
-
Bader, G.D.1
Betel, D.2
Hogue, C.W.3
-
59
-
-
33846047770
-
IntAct - open source resource for molecular interaction data
-
Kerrien S, Alam-Faruque Y, Aranda B, et al. IntAct - open source resource for molecular interaction data. Nucleic Acids Res 2007; 35:D561-D565.
-
(2007)
Nucleic Acids Res
, vol.35
-
-
Kerrien, S.1
Alam-Faruque, Y.2
Aranda, B.3
-
64
-
-
34249107988
-
The minimum information required for reporting a molecular interaction experiment (MIMIx)
-
Orchard S, Salwinski L, Kerrien S, et al. The minimum information required for reporting a molecular interaction experiment (MIMIx). Nat Biotechnol 2007; 25:894-898.
-
(2007)
Nat Biotechnol
, vol.25
, pp. 894-898
-
-
Orchard, S.1
Salwinski, L.2
Kerrien, S.3
-
65
-
-
0742323374
-
The HUPO PSI's molecular interaction format - a community standard for the representation of protein interaction data
-
Hermjakob H, Montecchi-Palazzi L, Bader G, et al. The HUPO PSI's molecular interaction format - a community standard for the representation of protein interaction data. Nat Biotechnol 2004; 22:177-183.
-
(2004)
Nat Biotechnol
, vol.22
, pp. 177-183
-
-
Hermjakob, H.1
Montecchi-Palazzi, L.2
Bader, G.3
-
66
-
-
34848910724
-
Human Proteome Organization Proteomics Standards Initiative: Data standardization, a view on developments and policy
-
Martens L, Orchard S, Apweiler R, Hermjakob H. Human Proteome Organization Proteomics Standards Initiative: data standardization, a view on developments and policy. Mol Cell Proteomics 2007; 6:1666-1667.
-
(2007)
Mol Cell Proteomics
, vol.6
, pp. 1666-1667
-
-
Martens, L.1
Orchard, S.2
Apweiler, R.3
Hermjakob, H.4
-
68
-
-
0242490780
-
Cytoscape: A software environment for integrated models of biomolecular interaction networks
-
Shannon P, Markiel A, Ozier O, et al. Cytoscape: a software environment for integrated models of biomolecular interaction networks. Genome Res 2003; 13:2498-2504.
-
(2003)
Genome Res
, vol.13
, pp. 2498-2504
-
-
Shannon, P.1
Markiel, A.2
Ozier, O.3
-
69
-
-
0037264524
-
The GRID: The General Repository for Interaction Datasets
-
Breitkreutz BJ, Stark C, Tyers M. The GRID: the General Repository for Interaction Datasets. Genome Biol 2003; 4:R23.
-
(2003)
Genome Biol
, vol.4
-
-
Breitkreutz, B.J.1
Stark, C.2
Tyers, M.3
-
71
-
-
0035171884
-
BIND - The Biomolecular Interaction Network Database
-
Bader GD, Donaldson I, Wolting C, et al. BIND - The Biomolecular Interaction Network Database. Nucleic Acids Res 2001; 29:242-245.
-
(2001)
Nucleic Acids Res
, vol.29
, pp. 242-245
-
-
Bader, G.D.1
Donaldson, I.2
Wolting, C.3
-
73
-
-
34548550566
-
The MiSink Plugin: Cytoscape as a graphical interface to the Database of Interacting Proteins
-
Salwinski L, Eisenberg D. The MiSink Plugin: Cytoscape as a graphical interface to the Database of Interacting Proteins. Bioinformatics 2007; 23:2193-2195.
-
(2007)
Bioinformatics
, vol.23
, pp. 2193-2195
-
-
Salwinski, L.1
Eisenberg, D.2
-
74
-
-
34249751614
-
Cerebral: A Cytoscape plugin for layout of and interaction with biological networks using subcellular localization annotation
-
Barsky A, Gardy JL, Hancock RE, Munzner T. Cerebral: a Cytoscape plugin for layout of and interaction with biological networks using subcellular localization annotation. Bioinformatics 2007; 23:1040-1042.
-
(2007)
Bioinformatics
, vol.23
, pp. 1040-1042
-
-
Barsky, A.1
Gardy, J.L.2
Hancock, R.E.3
Munzner, T.4
-
75
-
-
34248576314
-
NetMatch: A Cytoscape plugin for searching biological networks
-
Ferro A, Giugno R, Pigola G, et al. NetMatch: a Cytoscape plugin for searching biological networks. Bioinformatics 2007; 23:910-912.
-
(2007)
Bioinformatics
, vol.23
, pp. 910-912
-
-
Ferro, A.1
Giugno, R.2
Pigola, G.3
-
76
-
-
33847274309
-
GOlorize: A Cytoscape plug-in for network visualization with Gene Ontology-based layout and coloring
-
Garcia O, Saveanu C, Cline M, et al. GOlorize: a Cytoscape plug-in for network visualization with Gene Ontology-based layout and coloring. Bioinformatics 2007; 23:394-396.
-
(2007)
Bioinformatics
, vol.23
, pp. 394-396
-
-
Garcia, O.1
Saveanu, C.2
Cline, M.3
-
77
-
-
33748672677
-
GenePro: A Cytoscape plug-in for advanced visualization and analysis of interaction networks
-
Vlasblom J, Wu S, Pu S, et al. GenePro: a Cytoscape plug-in for advanced visualization and analysis of interaction networks. Bioinformatics 2006; 22:2178-2179.
-
(2006)
Bioinformatics
, vol.22
, pp. 2178-2179
-
-
Vlasblom, J.1
Wu, S.2
Pu, S.3
-
78
-
-
24044440971
-
BiNGO: A Cytoscape plugin to assess overrepresentation of gene ontology categories in biological networks
-
Maere S, Heymans K, Kuiper M. BiNGO: a Cytoscape plugin to assess overrepresentation of gene ontology categories in biological networks. Bioinformatics 2005; 21:3448-3449.
-
(2005)
Bioinformatics
, vol.21
, pp. 3448-3449
-
-
Maere, S.1
Heymans, K.2
Kuiper, M.3
-
79
-
-
4544322645
-
Predicting 22 protein localizations in budding yeast
-
Cai YD, Chou KC. Predicting 22 protein localizations in budding yeast. Biochem Biophys Res Commun 2004; 323:425-428.
-
(2004)
Biochem Biophys Res Commun
, vol.323
, pp. 425-428
-
-
Cai, Y.D.1
Chou, K.C.2
-
80
-
-
16344396089
-
Predicting protein localization in budding yeast
-
Chou KC, Cai YD. Predicting protein localization in budding yeast. Bioinformatics 2005; 21:944-950.
-
(2005)
Bioinformatics
, vol.21
, pp. 944-950
-
-
Chou, K.C.1
Cai, Y.D.2
-
81
-
-
34249318001
-
-
Chou KC, Shen HB. Euk-mPLoc: a fusion classifier for large-scale eukaryotic protein subcellular location prediction by incorporating multiple sites. J Proteome Res 2007; 6:1728-1734.
-
Chou KC, Shen HB. Euk-mPLoc: a fusion classifier for large-scale eukaryotic protein subcellular location prediction by incorporating multiple sites. J Proteome Res 2007; 6:1728-1734.
-
-
-
-
82
-
-
35448970604
-
Protein subcellular localization prediction based on compartment-specific features and structure conservation
-
Su EC, Chiu HS, Lo A, et al. Protein subcellular localization prediction based on compartment-specific features and structure conservation. BMC Bioinformatics 2007; 8:330.
-
(2007)
BMC Bioinformatics
, vol.8
, pp. 330
-
-
Su, E.C.1
Chiu, H.S.2
Lo, A.3
-
83
-
-
0142184341
-
Global analysis of protein localization in budding yeast
-
Huh WK, Falvo JV, Gerke LC, et al. Global analysis of protein localization in budding yeast. Nature 2003; 425:686-691.
-
(2003)
Nature
, vol.425
, pp. 686-691
-
-
Huh, W.K.1
Falvo, J.V.2
Gerke, L.C.3
-
84
-
-
33746112995
-
ORFeome cloning and global analysis of protein localization in the fission yeast Schizosaccharomyces pombe
-
Matsuyama A, Arai R, Yashiroda Y, et al. ORFeome cloning and global analysis of protein localization in the fission yeast Schizosaccharomyces pombe. Nat Biotechnol 2006; 24:841-847.
-
(2006)
Nat Biotechnol
, vol.24
, pp. 841-847
-
-
Matsuyama, A.1
Arai, R.2
Yashiroda, Y.3
-
86
-
-
35648976118
-
The diploid genome sequence of an individual human
-
Levy S, Sutton G, Ng PC, et al. The diploid genome sequence of an individual human. PLoS Biol 2007; 5:e254.
-
(2007)
PLoS Biol
, vol.5
-
-
Levy, S.1
Sutton, G.2
Ng, P.C.3
|