메뉴 건너뛰기




Volumn 14, Issue 7, 2004, Pages 1324-1332

Functional proteomics mapping of a human signaling pathway

Author keywords

[No Author keywords available]

Indexed keywords

SMAD PROTEIN; SMALL INTERFERING RNA; TRANSFORMING GROWTH FACTOR BETA;

EID: 3543143101     PISSN: 10889051     EISSN: None     Source Type: Journal    
DOI: 10.1101/gr.2334104     Document Type: Article
Times cited : (261)

References (53)
  • 5
    • 0037204990 scopus 로고    scopus 로고
    • Signal transduction by the TGF-β superfamily
    • Attisano, L. and Wrana, J.L. 2002. Signal transduction by the TGF-β superfamily. Science 296: 1646-1647.
    • (2002) Science , vol.296 , pp. 1646-1647
    • Attisano, L.1    Wrana, J.L.2
  • 6
    • 0036568983 scopus 로고    scopus 로고
    • Identification of candidate genes for Sjogren's syndrome using MRL/lpr mouse model of Sjogren's syndrome and cDNA microarray analysis
    • Azuma, T., Takei, M., Yoshikawa, T., Nagasugi, Y., Kato, M., Otsuka, M., Shiraiwa, H., Sugano, S., Mitamura, K., Sawada, S., et al. 2002. Identification of candidate genes for Sjogren's syndrome using MRL/lpr mouse model of Sjogren's syndrome and cDNA microarray analysis. Immunol. Lett. 81: 171-176.
    • (2002) Immunol. Lett. , vol.81 , pp. 171-176
    • Azuma, T.1    Takei, M.2    Yoshikawa, T.3    Nagasugi, Y.4    Kato, M.5    Otsuka, M.6    Shiraiwa, H.7    Sugano, S.8    Mitamura, K.9    Sawada, S.10
  • 7
    • 0029829230 scopus 로고    scopus 로고
    • A novel mesoderm inducer, Madr2, functions in the activin signal transduction pathway
    • Baker, J.C. and Harland, R.M. 1996. A novel mesoderm inducer, Madr2, functions in the activin signal transduction pathway. Genes & Dev. 10: 1880-1889.
    • (1996) Genes & Dev. , vol.10 , pp. 1880-1889
    • Baker, J.C.1    Harland, R.M.2
  • 8
    • 0000884978 scopus 로고
    • Using the two-hybrid system to detect protein-protein interactions
    • (ed. D.A. Hartley) Oxford University Press, Oxford, UK
    • Bartel, P.L. 1993. Using the two-hybrid system to detect protein-protein interactions. In Cellular interactions in development: A practical approach (ed. D.A. Hartley), pp. 153-179. Oxford University Press, Oxford, UK.
    • (1993) Cellular Interactions in Development: A Practical Approach , pp. 153-179
    • Bartel, P.L.1
  • 9
    • 0030045605 scopus 로고    scopus 로고
    • A protein linkage map of Escherichia coli bacteriophage T7
    • Bartel, P.L., Roecklein, J.A., Sen Gupta, D., and Fields, S. 1996. A protein linkage map of Escherichia coli bacteriophage T7. Nat. Genet. 12: 72-77.
    • (1996) Nat. Genet. , vol.12 , pp. 72-77
    • Bartel, P.L.1    Roecklein, J.A.2    Sen Gupta, D.3    Fields, S.4
  • 10
    • 0036699073 scopus 로고    scopus 로고
    • PP1 binds Sara and negatively regulates Dpp signaling in Drosophila melanogaster
    • Bennett, D. and Alphey, L. 2002. PP1 binds Sara and negatively regulates Dpp signaling in Drosophila melanogaster. Nat. Genet. 31: 419-423.
    • (2002) Nat. Genet. , vol.31 , pp. 419-423
    • Bennett, D.1    Alphey, L.2
  • 13
    • 0033214905 scopus 로고    scopus 로고
    • Mouse transporter protein, a membrane protein that regulates cellular multidrug resistance, is localized to lysosomes
    • Cabrita, M.A., Hobman, T.C., Hogue, D.E., King, K.M., and Cass, C.E. 1999. Mouse transporter protein, a membrane protein that regulates cellular multidrug resistance, is localized to lysosomes. Cancer Res. 59: 4890-4897.
    • (1999) Cancer Res. , vol.59 , pp. 4890-4897
    • Cabrita, M.A.1    Hobman, T.C.2    Hogue, D.E.3    King, K.M.4    Cass, C.E.5
  • 14
    • 0032101178 scopus 로고    scopus 로고
    • Direct binding of Smad3 and Smad4 to critical TGF β-inducible elements in the promoter of human plasminogen activator inhibitor-type 1 gene
    • Dennler, S., Itoh, S., Vivien, D., ten Dijke, P., Huet, S., and Gauthier, J.M. 1998. Direct binding of Smad3 and Smad4 to critical TGF β-inducible elements in the promoter of human plasminogen activator inhibitor-type 1 gene. EMBO J. 17: 3091-3100.
    • (1998) EMBO J. , vol.17 , pp. 3091-3100
    • Dennler, S.1    Itoh, S.2    Vivien, D.3    ten Dijke, P.4    Huet, S.5    Gauthier, J.M.6
  • 15
    • 0035942736 scopus 로고    scopus 로고
    • Duplexes of 21-nucleotide RNAs mediate RNA interference in cultured mammalian cells
    • Elbashir, S.M., Harborth, J., Lendeckel, W., Yalcin, A., Weber, K., and Tuschl, T. 2001. Duplexes of 21-nucleotide RNAs mediate RNA interference in cultured mammalian cells. Nature 411: 494-498.
    • (2001) Nature , vol.411 , pp. 494-498
    • Elbashir, S.M.1    Harborth, J.2    Lendeckel, W.3    Yalcin, A.4    Weber, K.5    Tuschl, T.6
  • 16
    • 0031978181 scopus 로고    scopus 로고
    • Base-calling of automated sequencer traces using phred. II. Error probabilities
    • Ewing, B. and Green, P. 1998. Base-calling of automated sequencer traces using phred. II. Error probabilities. Genome Res. 8: 186-194.
    • (1998) Genome Res. , vol.8 , pp. 186-194
    • Ewing, B.1    Green, P.2
  • 18
    • 0028568056 scopus 로고
    • Interaction mating reveals binary and ternary connections between Drosophila cell cycle regulators
    • Finley Jr., R.L. and Brent, R. 1994. Interaction mating reveals binary and ternary connections between Drosophila cell cycle regulators. Proc. Natl. Acad. Sci. 91: 12980-12984.
    • (1994) Proc. Natl. Acad. Sci. , vol.91 , pp. 12980-12984
    • Finley Jr., R.L.1    Brent, R.2
  • 21
    • 0042026850 scopus 로고    scopus 로고
    • Inactivation of the E3/LAPTm5 gene by chromosomal rearrangement and DNA methylation in human multiple myeloma
    • Hayami, Y., Iida, S., Nakazawa, N., Hanamura, I., Kato, M., Komatsu, H., Miura, I., Dave, B.J., Sanger, W.G., Lim, B., et al. 2003. Inactivation of the E3/LAPTm5 gene by chromosomal rearrangement and DNA methylation in human multiple myeloma. Leukemia 17: 1650-1657.
    • (2003) Leukemia , vol.17 , pp. 1650-1657
    • Hayami, Y.1    Iida, S.2    Nakazawa, N.3    Hanamura, I.4    Kato, M.5    Komatsu, H.6    Miura, I.7    Dave, B.J.8    Sanger, W.G.9    Lim, B.10
  • 23
    • 0032849859 scopus 로고    scopus 로고
    • CAP3: A DNA sequence assembly program
    • Huang, X. and Madan, A. 1999. CAP3: A DNA sequence assembly program. Genome Res. 9: 868-877.
    • (1999) Genome Res. , vol.9 , pp. 868-877
    • Huang, X.1    Madan, A.2
  • 24
    • 0035836765 scopus 로고    scopus 로고
    • A comprehensive two-hybrid analysis to explore the yeast protein interactome
    • Ito, T., Chiba, T., Ozawa, R., Yoshida, M., Hattori, M., and Sakaki, Y. 2001. A comprehensive two-hybrid analysis to explore the yeast protein interactome. Proc. Natl. Acad. Sci. 98: 4569-4574.
    • (2001) Proc. Natl. Acad. Sci. , vol.98 , pp. 4569-4574
    • Ito, T.1    Chiba, T.2    Ozawa, R.3    Yoshida, M.4    Hattori, M.5    Sakaki, Y.6
  • 25
    • 1942534004 scopus 로고    scopus 로고
    • Regulation of the TGFβ signalling pathway by ubiquitin-mediated degradation
    • Izzi, L. and Attisano, L. 2004. Regulation of the TGFβ signalling pathway by ubiquitin-mediated degradation. Oncogene 23: 2071-2078.
    • (2004) Oncogene , vol.23 , pp. 2071-2078
    • Izzi, L.1    Attisano, L.2
  • 26
    • 0036837665 scopus 로고    scopus 로고
    • Identification of mZnf8, a mouse kruppel-like transcriptional repressor, as a novel nuclear interaction partner of Smad1
    • Jiao, K., Zhou, Y., and Hogan, B.L. 2002. Identification of mZnf8, a mouse kruppel-like transcriptional repressor, as a novel nuclear interaction partner of Smad1. Mol. Cell. Biol. 22: 7633-7644.
    • (2002) Mol. Cell. Biol. , vol.22 , pp. 7633-7644
    • Jiao, K.1    Zhou, Y.2    Hogan, B.L.3
  • 27
    • 0032516862 scopus 로고    scopus 로고
    • Identification and functional characterization of a Smad binding element (SBE) in the JunB promoter that acts as a transforming growth factor-β, activin, and bone morphogenetic protein-inducible enhancer
    • Jonk, L.J., Itoh, S., Heldin, C.H., ten Dijke, P., and Kruijer, W. 1998. Identification and functional characterization of a Smad binding element (SBE) in the JunB promoter that acts as a transforming growth factor-β, activin, and bone morphogenetic protein-inducible enhancer. J. Biol. Chem. 273: 21145-21152.
    • (1998) J. Biol. Chem. , vol.273 , pp. 21145-21152
    • Jonk, L.J.1    Itoh, S.2    Heldin, C.H.3    ten Dijke, P.4    Kruijer, W.5
  • 28
    • 0034517389 scopus 로고    scopus 로고
    • Smad7 binds to Smurf2 to form an E3 ubiquitin ligase that targets the TGF β receptor for degradation
    • Kavsak, P., Rasmussen, R.K., Causing, C.G., Bonni, S., Zhu, H., Thomsen, G.H., and Wrana, J.L. 2000. Smad7 binds to Smurf2 to form an E3 ubiquitin ligase that targets the TGF β receptor for degradation. Mol. Cell 6: 1365-1375.
    • (2000) Mol. Cell , vol.6 , pp. 1365-1375
    • Kavsak, P.1    Rasmussen, R.K.2    Causing, C.G.3    Bonni, S.4    Zhu, H.5    Thomsen, G.H.6    Wrana, J.L.7
  • 29
    • 0026334362 scopus 로고
    • Identification of regulatory sequences in the type 1 plasminogen activator inhibitor gene responsive to transforming growth factor β
    • Keeton, M.R., Curriden, S.A., van Zonneveld, A.J., and Loskutoff, D.J. 1991. Identification of regulatory sequences in the type 1 plasminogen activator inhibitor gene responsive to transforming growth factor β. J. Biol. Chem. 266: 23048-23052.
    • (1991) J. Biol. Chem. , vol.266 , pp. 23048-23052
    • Keeton, M.R.1    Curriden, S.A.2    van Zonneveld, A.J.3    Loskutoff, D.J.4
  • 30
    • 0035910270 scopus 로고    scopus 로고
    • Predicting transmembrane protein topology with a hidden Markov model: Application to complete genomes
    • Krogh, A., Larsson, B., von Heijne, G., and Sonnhammer, E.L. 2001. Predicting transmembrane protein topology with a hidden Markov model: Application to complete genomes. J. Mol. Biol. 305: 567-580.
    • (2001) J. Mol. Biol. , vol.305 , pp. 567-580
    • Krogh, A.1    Larsson, B.2    von Heijne, G.3    Sonnhammer, E.L.4
  • 32
    • 0029834067 scopus 로고    scopus 로고
    • Partnership between DPC4 and SMAD proteins in TGF-β signalling pathways
    • Lagna, G., Hata, A., Hemmati-Brivanlou, A., and Massague, J. 1996. Partnership between DPC4 and SMAD proteins in TGF-β signalling pathways. Nature 383: 832-836.
    • (1996) Nature , vol.383 , pp. 832-836
    • Lagna, G.1    Hata, A.2    Hemmati-Brivanlou, A.3    Massague, J.4
  • 33
    • 0030698388 scopus 로고    scopus 로고
    • Regulation of bone matrix protein expression and induction of differentiation of human osteoblasts and human bone marrow stromal cells by bone morphogenetic protein-2
    • Lecanda, F., Avioli, L.V., and Cheng, S.L. 1997. Regulation of bone matrix protein expression and induction of differentiation of human osteoblasts and human bone marrow stromal cells by bone morphogenetic protein-2. J. Cell Biochem. 67: 386-396.
    • (1997) J. Cell Biochem. , vol.67 , pp. 386-396
    • Lecanda, F.1    Avioli, L.V.2    Cheng, S.L.3
  • 34
    • 0029931509 scopus 로고    scopus 로고
    • A human Mad protein acting as a BMP-regulated transcriptional activator
    • Liu, F., Hata, A., Baker, J.C., Doody, J., Carcamo, J., Harland, R.M., and Massague, J. 1996. A human Mad protein acting as a BMP-regulated transcriptional activator. Nature 381: 620-623.
    • (1996) Nature , vol.381 , pp. 620-623
    • Liu, F.1    Hata, A.2    Baker, J.C.3    Doody, J.4    Carcamo, J.5    Harland, R.M.6    Massague, J.7
  • 35
    • 0030300115 scopus 로고    scopus 로고
    • MADR2 is a substrate of the TGFβ receptor and its phosphorylation is required for nuclear accumulation and signaling
    • Macias-Silva, M., Abdollah, S., Hoodless, P.A., Pirone, R., Attisano, L., and Wrana, J.L. 1996. MADR2 is a substrate of the TGFβ receptor and its phosphorylation is required for nuclear accumulation and signaling. Cell 87: 1215-1224.
    • (1996) Cell , vol.87 , pp. 1215-1224
    • Macias-Silva, M.1    Abdollah, S.2    Hoodless, P.A.3    Pirone, R.4    Attisano, L.5    Wrana, J.L.6
  • 36
    • 0031685620 scopus 로고    scopus 로고
    • TGF-β signal transduction
    • Massague, J. 1998. TGF-β signal transduction. Annu. Rev. Biochem. 67: 753-791.
    • (1998) Annu. Rev. Biochem. , vol.67 , pp. 753-791
    • Massague, J.1
  • 37
    • 0034712955 scopus 로고    scopus 로고
    • Genome-wide analysis of vaccinia virus protein-protein interactions
    • McCraith, S., Holtzman, T., Moss, B., and Fields, S. 2000. Genome-wide analysis of vaccinia virus protein-protein interactions. Proc. Natl. Acad. Sci. 97: 4879-4884.
    • (2000) Proc. Natl. Acad. Sci. , vol.97 , pp. 4879-4884
    • McCraith, S.1    Holtzman, T.2    Moss, B.3    Fields, S.4
  • 38
    • 0031240609 scopus 로고    scopus 로고
    • A neural network method for identification of prokaryotic and eukaryotic signal peptides and prediction of their cleavage sites
    • Nielsen, H., Engelbrecht, J., Brunak, S., and von Heijne, G. 1997. A neural network method for identification of prokaryotic and eukaryotic signal peptides and prediction of their cleavage sites. Int. J. Neural. Syst. 8: 581-599.
    • (1997) Int. J. Neural. Syst. , vol.8 , pp. 581-599
    • Nielsen, H.1    Engelbrecht, J.2    Brunak, S.3    von Heijne, G.4
  • 39
    • 0035977979 scopus 로고    scopus 로고
    • Activation of a novel microglial gene encoding a lysosomal membrane protein in response to neuronal apoptosis
    • Origasa, M., Tanaka, S., Suzuki, K., Tone, S., Lim, B., and Koike, T. 2001. Activation of a novel microglial gene encoding a lysosomal membrane protein in response to neuronal apoptosis. Brain Res. Mol. Brain Res. 88: 1-13.
    • (2001) Brain Res. Mol. Brain Res. , vol.88 , pp. 1-13
    • Origasa, M.1    Tanaka, S.2    Suzuki, K.3    Tone, S.4    Lim, B.5    Koike, T.6
  • 41
    • 0347927630 scopus 로고    scopus 로고
    • SANE, a novel LEM domain protein, regulates bone morphogenetic protein signaling through interaction with Smad1
    • Raju, G.P., Dimova, N., Klein, P.S., and Huang, H.C. 2003. SANE, a novel LEM domain protein, regulates bone morphogenetic protein signaling through interaction with Smad1. J. Biol. Chem. 278: 428-437.
    • (2003) J. Biol. Chem. , vol.278 , pp. 428-437
    • Raju, G.P.1    Dimova, N.2    Klein, P.S.3    Huang, H.C.4
  • 42
    • 0041352862 scopus 로고    scopus 로고
    • Stage-specific expression of Clast6/E3/LAPTM5 during B cell differentiation: Elevated expression in human B lymphomas
    • Seimiya, M., O-Wang, J., Bahar, R., Kawamura, K., Wang, Y., Saisho, H., and Tagawa, M. 2003. Stage-specific expression of Clast6/E3/LAPTM5 during B cell differentiation: elevated expression in human B lymphomas. Int. J. Oncol. 22: 301-304.
    • (2003) Int. J. Oncol. , vol.22 , pp. 301-304
    • Seimiya, M.1    O-Wang, J.2    Bahar, R.3    Kawamura, K.4    Wang, Y.5    Saisho, H.6    Tagawa, M.7
  • 44
    • 0037040874 scopus 로고    scopus 로고
    • The LIM domain protein LMO4 interacts with the cofactor CtIP and the tumor suppressor BRCA1 and inhibits BRCA1 activity
    • Sum, E.Y., Peng, B., Yu, X., Chen, J., Byrne, J., Lindeman, G.J., and Visvader, J.E. 2002. The LIM domain protein LMO4 interacts with the cofactor CtIP and the tumor suppressor BRCA1 and inhibits BRCA1 activity. J. Biol. Chem. 277: 7849-7856.
    • (2002) J. Biol. Chem. , vol.277 , pp. 7849-7856
    • Sum, E.Y.1    Peng, B.2    Yu, X.3    Chen, J.4    Byrne, J.5    Lindeman, G.J.6    Visvader, J.E.7
  • 45
    • 0033956131 scopus 로고    scopus 로고
    • Signaling inputs converge on nuclear effectors in TGF-β signaling
    • ten Dijke, P., Miyazono, K., and Heldin, C.H. 2000. Signaling inputs converge on nuclear effectors in TGF-β signaling. Trends Biochem. Sci. 25: 64-70.
    • (2000) Trends Biochem. Sci. , vol.25 , pp. 64-70
    • ten Dijke, P.1    Miyazono, K.2    Heldin, C.H.3
  • 47
    • 0032428684 scopus 로고    scopus 로고
    • SARA, a FYVE domain protein that recruits Smad2 to the TGFβ receptor
    • Tsukazaki, T., Chiang, T.A., Davison, A.F., Attisano, L., and Wrana, J.L. 1998. SARA, a FYVE domain protein that recruits Smad2 to the TGFβ receptor. Cell 95: 779-791.
    • (1998) Cell , vol.95 , pp. 779-791
    • Tsukazaki, T.1    Chiang, T.A.2    Davison, A.F.3    Attisano, L.4    Wrana, J.L.5
  • 50
    • 0029099409 scopus 로고
    • Ras-Raf interaction: Two-hybrid analysis
    • Vojtek, A.B. and Hollenberg, S.M. 1995. Ras-Raf interaction: Two-hybrid analysis. Methods Enzymol. 255: 331-342.
    • (1995) Methods Enzymol. , vol.255 , pp. 331-342
    • Vojtek, A.B.1    Hollenberg, S.M.2
  • 51
    • 0037066599 scopus 로고    scopus 로고
    • Z39Ig is co-expressed with activated macrophage genes
    • Walker, M.G. 2002. Z39Ig is co-expressed with activated macrophage genes. Biochim. Biophys. Acta 1574: 387-390.
    • (2002) Biochim. Biophys. Acta , vol.1574 , pp. 387-390
    • Walker, M.G.1
  • 53
    • 0029786212 scopus 로고    scopus 로고
    • Receptor-associated Mad homologues synergize as effectors of the TGF-β response
    • Zhang, Y., Feng, X., We, R., and Derynck, R. 1996. Receptor-associated Mad homologues synergize as effectors of the TGF-β response. Nature 383: 168-172.
    • (1996) Nature , vol.383 , pp. 168-172
    • Zhang, Y.1    Feng, X.2    We, R.3    Derynck, R.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.