-
1
-
-
34250305146
-
Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project
-
DOI 10.1038/nature05874, PII NATURE05874
-
Birney E, Stamatoyannopoulos JA, Dutta A, et al. Identication and analysis of functional elements in 1% of the human genome by the ENCODE pilot project. Nature 2007; 447(7146):799-816. (Pubitemid 46920138)
-
(2007)
Nature
, vol.447
, Issue.7146
, pp. 799-816
-
-
Birney, E.1
Stamatoyannopoulos, J.A.2
Dutta, A.3
Guigo, R.4
Gingeras, T.R.5
Margulies, E.H.6
Weng, Z.7
Snyder, M.8
Dermitzakis, E.T.9
Thurman, R.E.10
Kuehn, M.S.11
Taylor, C.M.12
Neph, S.13
Koch, C.M.14
Asthana, S.15
Malhotra, A.16
Adzhubei, I.17
Greenbaum, J.A.18
Andrews, R.M.19
Flicek, P.20
Boyle, P.J.21
Cao, H.22
Carter, N.P.23
Clelland, G.K.24
Davis, S.25
Day, N.26
Dhami, P.27
Dillon, S.C.28
Dorschner, M.O.29
Fiegler, H.30
Giresi, P.G.31
Goldy, J.32
Hawrylycz, M.33
Haydock, A.34
Humbert, R.35
James, K.D.36
Johnson, B.E.37
Johnson, E.M.38
Frum, T.T.39
Rosenzweig, E.R.40
Karnani, N.41
Lee, K.42
Lefebvre, G.C.43
Navas, P.A.44
Neri, F.45
Parker, S.C.J.46
Sabo, P.J.47
Sandstrom, R.48
Shafer, A.49
Vetrie, D.50
Weaver, M.51
Wilcox, S.52
Yu, M.53
Collins, F.S.54
Dekker, J.55
Lieb, J.D.56
Tullius, T.D.57
Crawford, G.E.58
Sunyaev, S.59
Noble, W.S.60
more..
-
2
-
-
37349038984
-
Genome-Wide High-Resolution Mapping of Exosome Substrates Reveals Hidden Features in the Arabidopsis Transcriptome
-
DOI 10.1016/j.cell.2007.10.056, PII S0092867407014766
-
Chekanova JA, Gregory BD, Reverdatto SV, et al. Genome-wide high-resolution mapping of exosome substrates reveals hidden features in the Arabidopsis transcriptome. Cell 2007; 131(7):1340-53. (Pubitemid 350297418)
-
(2007)
Cell
, vol.131
, Issue.7
, pp. 1340-1353
-
-
Chekanova, J.A.1
Gregory, B.D.2
Reverdatto, S.V.3
Chen, H.4
Kumar, R.5
Hooker, T.6
Yazaki, J.7
Li, P.8
Skiba, N.9
Peng, Q.10
Alonso, J.11
Brukhin, V.12
Grossniklaus, U.13
Ecker, J.R.14
Belostotsky, D.A.15
-
3
-
-
46249096804
-
Dynamic repertoire of a eukaryotic transcriptome surveyed at single-nucleotide resolution
-
DOI 10.1038/nature07002, PII NATURE07002
-
Wilhelm BT, Marguerat S, Watt S, et al. Dynamic repertoire of a eukaryotic transcriptome surveyed at single-nucleotide resolution. Nature 2008; 453(7199):1239-43. (Pubitemid 351913597)
-
(2008)
Nature
, vol.453
, Issue.7199
, pp. 1239-1243
-
-
Wilhelm, B.T.1
Marguerat, S.2
Watt, S.3
Schubert, F.4
Wood, V.5
Goodhead, I.6
Penkett, C.J.7
Rogers, J.8
Bahler, J.9
-
4
-
-
50349097798
-
The RNA exosome component hRrp6 is a target for 5-uorouracil in human cells
-
Kammler S, Lykke-Andersen S, Jensen TH. The RNA exosome component hRrp6 is a target for 5-uorouracil in human cells. Mol Cancer Res 2008; 6(6):990-5.
-
(2008)
Mol Cancer Res
, vol.6
, Issue.6
, pp. 990-5
-
-
Kammler, S.1
Lykke-Andersen, S.2
Jensen, T.H.3
-
5
-
-
57849123049
-
RNA exosome depletion reveals transcription upstream of active human promoters
-
Preker P, Nielsen J, Kammler S, et al. RNA exosome depletion reveals transcription upstream of active human promoters. Science 2008; 322(5909):1851-4.
-
(2008)
Science
, vol.322
, Issue.5909
, pp. 1851-4
-
-
Preker, P.1
Nielsen, J.2
Kammler, S.3
-
6
-
-
33846083772
-
The zinc-finger antiviral protein recruits the RNA processing exosome to degrade the target mRNA
-
DOI 10.1073/pnas.0607063104
-
Guo X, Ma J, Sun J, et al. The zincnger antiviral protein recruits the RNA processing exosome to degrade the target mRNA. Proc Natl Acad Sci USA 2007; 104(1):151-6. (Pubitemid 46068000)
-
(2007)
Proceedings of the National Academy of Sciences of the United States of America
, vol.104
, Issue.1
, pp. 151-156
-
-
Guo, X.1
Ma, J.2
Sun, J.3
Gao, G.4
-
7
-
-
33746283696
-
Messenger RNA Turnover and its Regulation in Herpesviral Infection
-
DOI 10.1016/S0065-3527(06)66007-7, PII S0065352706660077
-
Glaunsinger BA, Ganem DE. Messenger RNA turnover and its regulation in herpesviral infection. Adv Virus Res 2006; 66:337-94. (Pubitemid 44107836)
-
(2006)
Advances in Virus Research
, vol.65
, pp. 337-394
-
-
Glaunsinger, B.A.1
Ganem, D.E.2
-
8
-
-
70249116059
-
The lssion yeast HIRA histone chaperone is required for promoter silencing and the suppression of cryptic antisense transcripts
-
Anderson HE, Wardle J, Korkut SV, et al. The lssion yeast HIRA histone chaperone is required for promoter silencing and the suppression of cryptic antisense transcripts. Mol Cell Biol 2009; 29(18):5158-67.
-
(2009)
Mol Cell Biol
, vol.29
, Issue.18
, pp. 5158-67
-
-
Anderson, H.E.1
Wardle, J.2
Korkut, S.V.3
-
9
-
-
50849133235
-
Nuclear quality control of RNA polymerase II ribonucleoproteins in yeast: Tilting the balance to shape the transcriptome
-
Villa T, Rougemaille M, Libri D. Nuclear quality control of RNA polymerase II ribonucleoproteins in yeast: tilting the balance to shape the transcriptome. Biochim Biophys Acta 2008; 1779(9):524-31.
-
(2008)
Biochim Biophys Acta
, vol.1779
, Issue.9
, pp. 524-31
-
-
Villa, T.1
Rougemaille, M.2
Libri, D.3
-
10
-
-
38949210998
-
Transcription Termination and RNA Degradation Contribute to Silencing of RNA Polymerase II Transcription within Heterochromatin
-
DOI 10.1016/j.molcel.2008.01.011, PII S1097276508000701
-
Vasiljeva L, Kim M, Terzi N, et al. Transcription termination and RNA degradation contribute to silencing of RNA polymerase II transcription within heterochromatin. Mol Cell 2008; 29(3):313-23. (Pubitemid 351215941)
-
(2008)
Molecular Cell
, vol.29
, Issue.3
, pp. 313-323
-
-
Vasiljeva, L.1
Kim, M.2
Terzi, N.3
Soares, L.M.4
Buratowski, S.5
-
11
-
-
37149034478
-
Trf4 targets ncRNAs from telomeric and rDNA spacer regions and functions in rDNA copy number control
-
DOI 10.1038/sj.emboj.7601921, PII 7601921
-
Houseley J, Kotovic K, El Hage A, et al. Trf4 targets ncRNAs from telomeric and rDNA spacer regions and functions in rDNA copy number control. EMBO 2007; 26(24):4996-5006. (Pubitemid 350261284)
-
(2007)
EMBO Journal
, vol.26
, Issue.24
, pp. 4996-5006
-
-
Houseley, J.1
Kotovic, K.2
El Hage, A.3
Tollervey, D.4
-
12
-
-
34249057729
-
RNAi-Dependent and -Independent RNA Turnover Mechanisms Contribute to Heterochromatic Gene Silencing
-
DOI 10.1016/j.cell.2007.03.038, PII S0092867407004540
-
Buhler M, Haas W, Gygi SP, et al. RNAi-dependent and -independent RNA turnover mechanisms contribute to heterochromatic gene silencing. Cell 2007; 129(4):707-21. (Pubitemid 46802379)
-
(2007)
Cell
, vol.129
, Issue.4
, pp. 707-721
-
-
Buhler, M.1
Haas, W.2
Gygi, S.P.3
Moazed, D.4
-
13
-
-
60549114880
-
Widespread bidirectional promoters are the major source of cryptic transcripts in yeast
-
Neil H, Malabat C, dAubenton-Carafa Y, et al. Widespread bidirectional promoters are the major source of cryptic transcripts in yeast. Nature 2009; 457(7232):1038-42.
-
(2009)
Nature
, vol.457
, Issue.7232
, pp. 1038-42
-
-
Neil, H.1
Malabat, C.2
Daubenton-Carafa, Y.3
-
14
-
-
60549108380
-
Bidirectional promoters generate pervasive transcription in yeast
-
Xu Z, Wei W, Gagneur J, et al. Bidirectional promoters generate pervasive transcription in yeast. Nature 2009; 457(7232):1033-7.
-
(2009)
Nature
, vol.457
, Issue.7232
, pp. 1033-7
-
-
Xu, Z.1
Wei, W.2
Gagneur, J.3
-
15
-
-
33644784770
-
Accumulation of unstable promoter-associated transcripts upon loss of the nuclear exosome subunit Rrp6p in Saccharomyces cerevisiae
-
DOI 10.1073/pnas.0507783103
-
Davis CA, Ares M Jr. Accumulation of unstable promoter-associated transcripts upon loss of the nuclear exosome subunit Rrp6p in Saccharomyces cerevisiae. Proc Natl Acad Sci USA 2006; 103(9):3262-7. (Pubitemid 43346458)
-
(2006)
Proceedings of the National Academy of Sciences of the United States of America
, vol.103
, Issue.9
, pp. 3262-3267
-
-
Davis, C.A.1
Ares Jr., M.2
-
16
-
-
77950244851
-
Genome-wide analysis reveals distinct substrate specicities of Rrp6, Dis3 and core exosome subunits
-
Kiss DL, Andrulis ED. Genome-wide analysis reveals distinct substrate specicities of Rrp6, Dis3 and core exosome subunits. RNA.
-
RNA
-
-
Kiss, D.L.1
Andrulis, E.D.2
-
17
-
-
76749101560
-
Splicing factor spf30 assists exosome-mediated gene silencing in lssion yeast
-
Bernard P, Drogat J, Dheur S, et al. Splicing factor spf30 assists exosome-mediated gene silencing in lssion yeast. Mol Cell Biol 30(5):1145-57.
-
Mol Cell Biol
, vol.30
, Issue.5
, pp. 1145-57
-
-
Bernard, P.1
Drogat, J.2
Dheur, S.3
-
18
-
-
37849048952
-
Global role for polyadenylation-assisted nuclear RNA degradation in posttranscriptional gene silencing
-
Wang SW, Stevenson AL, Kearsey SE, et al. Global role for polyadenylation-assisted nuclear RNA degradation in posttranscriptional gene silencing. Mol Cell Biol 2008; 28(2):656-65.
-
(2008)
Mol Cell Biol
, vol.28
, Issue.2
, pp. 656-65
-
-
Wang, S.W.1
Stevenson, A.L.2
Kearsey, S.E.3
-
19
-
-
84878770351
-
Ribonuclease activity of Dis3 is required for mitotic progression and provides a possible link between heterochromatin and kinetochore function
-
Murakami H, Goto DB, Toda T, et al. Ribonuclease activity of Dis3 is required for mitotic progression and provides a possible link between heterochromatin and kinetochore function. PLoS ONE 2007; 2:e317.
-
(2007)
PLoS ONE
, vol.2
-
-
Murakami, H.1
Goto, D.B.2
Toda, T.3
-
20
-
-
34247609855
-
Distinct roles of HDAC complexes in promoter silencing, antisense suppression and DNA damage protection
-
DOI 10.1038/nsmb1239, PII NSMB1239
-
Nicolas E, Yamada T, Cam HP, et al. Distinct roles of HDAC complexes in promoter silencing, antisense suppression and DNA damage protection. Nat Struct Mol Biol 2007; 14(5):372-80. (Pubitemid 46685888)
-
(2007)
Nature Structural and Molecular Biology
, vol.14
, Issue.5
, pp. 372-380
-
-
Nicolas, E.1
Yamada, T.2
Cam, H.P.3
FitzGerald, P.C.4
Kobayashi, R.5
Grewal, S.I.S.6
-
21
-
-
33845755946
-
Heterochromatin revisited
-
DOI 10.1038/nrg2008, PII NRG2008
-
Grewal SI, Jia S. Heterochromatin revisited. Nat Rev Genet 2007; 8(1):35-46. (Pubitemid 46006048)
-
(2007)
Nature Reviews Genetics
, vol.8
, Issue.1
, pp. 35-46
-
-
Grewal, S.I.S.1
Jia, S.2
-
22
-
-
0042528729
-
Heterochromatin and epigenetic control of gene expression
-
DOI 10.1126/science.1086887
-
Grewal SI, Moazed D. Heterochromatin and epigenetic control of gene expression. Science 2003; 301(5634):798-802. (Pubitemid 36962612)
-
(2003)
Science
, vol.301
, Issue.5634
, pp. 798-802
-
-
Grewal, S.I.S.1
Moazed, D.2
-
23
-
-
33947116424
-
Using genomics and proteomics to investigate mechanisms of transcriptional silencing in Saccharomyces cerevisiae
-
DOI 10.1093/bfgp/ell035
-
Gao L, Gross DS. Using genomics and proteomics to investigate mechanisms of transcriptional silencing in Saccharomyces cerevisiae. Brief Funct Genomic Proteomic 2006; 5(4):280-8. (Pubitemid 46404132)
-
(2006)
Briefings in Functional Genomics and Proteomics
, vol.5
, Issue.4
, pp. 280-288
-
-
Gao, L.1
Gross, D.S.2
-
24
-
-
0035805063
-
Silenced chromatin is permissive to activator binding and PIC recruitment
-
DOI 10.1016/S0092-8674(01)00329-4
-
Sekinger EA, Gross DS. Silenced chromatin is permissive to activator binding and PIC recruitment. Cell 2001; 105(3):403-14. (Pubitemid 32455346)
-
(2001)
Cell
, vol.105
, Issue.3
, pp. 403-414
-
-
Sekinger, E.A.1
Gross, D.S.2
-
25
-
-
33751504083
-
Genome-Wide Distribution of Yeast RNA Polymerase II and Its Control by Sen1 Helicase
-
DOI 10.1016/j.molcel.2006.10.023, PII S1097276506007295
-
Steinmetz EJ, Warren CL, Kuehner JN, et al. Genome-wide distribution of yeast RNA polymerase II and its control by Sen1 helicase. Mol Cell 2006; 24(5):735-46. (Pubitemid 44839212)
-
(2006)
Molecular Cell
, vol.24
, Issue.5
, pp. 735-746
-
-
Steinmetz, E.J.1
Warren, C.L.2
Kuehner, J.N.3
Panbehi, B.4
Ansari, A.Z.5
Brow, D.A.6
-
26
-
-
1842473890
-
Polycomb silencing blocks transcription initiation
-
DOI 10.1016/S1097-2765(04)00128-5, PII S1097276504001285
-
Dellino GI, Schwartz YB, Farkas G, et al. Polycomb silencing blocks transcription initiation. Mol Cell 2004; 13(6):887-93. (Pubitemid 38438483)
-
(2004)
Molecular Cell
, vol.13
, Issue.6
, pp. 887-893
-
-
Dellino, G.I.1
Schwartz, Y.B.2
Farkas, G.3
McCabe, D.4
Elgin, S.C.R.5
Pirrotta, V.6
-
28
-
-
41349094797
-
Transcription regulation through promoter-proximal pausing of RNA polymerase II
-
DOI 10.1126/science.1150843
-
Core LJ, Lis JT. Transcription regulation through promoter-proximal pausing of RNA polymerase II. Science 2008; 319(5871):1791-2. (Pubitemid 351451556)
-
(2008)
Science
, vol.319
, Issue.5871
, pp. 1791-1792
-
-
Core, L.J.1
Lis, J.T.2
-
29
-
-
57849109058
-
Nascent RNA sequencing reveals widespread pausing and divergent initiation at human promoters
-
Core LJ, Waterfall JJ, Lis JT. Nascent RNA sequencing reveals widespread pausing and divergent initiation at human promoters. Science 2008; 322(5909):1845-8.
-
(2008)
Science
, vol.322
, Issue.5909
, pp. 1845-8
-
-
Core, L.J.1
Waterfall, J.J.2
Lis, J.T.3
-
30
-
-
49449105283
-
Phosphorylation of the RNA polymerase II C-terminal domain dictates transcription termination choice
-
Gudipati RK, Villa T, Boulay J, et al. Phosphorylation of the RNA polymerase II C-terminal domain dictates transcription termination choice. Nat Struct Mol Biol 2008; 15(8):786-94.
-
(2008)
Nat Struct Mol Biol
, vol.15
, Issue.8
, pp. 786-94
-
-
Gudipati, R.K.1
Villa, T.2
Boulay, J.3
-
31
-
-
49449110180
-
The Nrd1-Nab3-Sen1 termination complex interacts with the Ser5-phosphorylated RNA polymerase II C-terminal domain
-
Vasiljeva L, Kim M, Mutschler H, et al. The Nrd1-Nab3-Sen1 termination complex interacts with the Ser5-phosphorylated RNA polymerase II C-terminal domain. Nat Struct Mol Biol 2008; 15(8):795-804.
-
(2008)
Nat Struct Mol Biol
, vol.15
, Issue.8
, pp. 795-804
-
-
Vasiljeva, L.1
Kim, M.2
Mutschler, H.3
-
32
-
-
33344478052
-
Regulation of yeast NRD1 expression by premature transcription termination
-
DOI 10.1016/j.molcel.2006.02.005, PII S1097276506000852
-
Arigo JT, Carroll KL, Ames JM, et al. Regulation of yeast NRD1 expression by premature transcription termination. Mol Cell 2006; 21(5):641-51. (Pubitemid 43290731)
-
(2006)
Molecular Cell
, vol.21
, Issue.5
, pp. 641-651
-
-
Arigo, J.T.1
Carroll, K.L.2
Ames, J.M.3
Corden, J.L.4
-
33
-
-
30744467674
-
Nrd1 interacts with the nuclear exosome for 3′ processing of RNA polymerase II transcripts
-
DOI 10.1016/j.molcel.2005.11.028, PII S1097276505018162
-
Vasiljeva L, Buratowski S. Nrd1 interacts with the nuclear exosome for 3′ processing of RNA polymerase II transcripts. Molecular cell 2006; 21(2):239-48. (Pubitemid 43099939)
-
(2006)
Molecular Cell
, vol.21
, Issue.2
, pp. 239-248
-
-
Vasiljeva, L.1
Buratowski, S.2
-
34
-
-
20444368818
-
RNA degradation by the exosome is promoted by a nuclear polyadenylation complex
-
DOI 10.1016/j.cell.2005.04.029, PII S0092867405004423
-
LaCava J, Houseley J, Saveanu C, et al. RNA degradation by the exosome is promoted by a nuclear polyadenylation complex. Cell 2005; 121(5):713-24. (Pubitemid 40797594)
-
(2005)
Cell
, vol.121
, Issue.5
, pp. 713-724
-
-
LaCava, J.1
Houseley, J.2
Saveanu, C.3
Petfalski, E.4
Thompson, E.5
Jacquier, A.6
Tollervey, D.7
-
35
-
-
22744459614
-
A new yeast poly(A) polymerase complex involved in RNA quality control
-
Vanacova S, Wolf J, Martin G, et al. A new yeast poly(A) polymerase complex involved in RNA quality control. PLoS Biol 2005; 3(6):e189.
-
(2005)
PLoS Biol
, vol.3
, Issue.6
-
-
Vanacova, S.1
Wolf, J.2
Martin, G.3
-
36
-
-
33646923128
-
Tethering RITS to a Nascent Transcript Initiates RNAi- and Heterochromatin-Dependent Gene Silencing
-
DOI 10.1016/j.cell.2006.04.025, PII S0092867406005149
-
Buhler M, Verdel A, Moazed D. Tethering RITS to a nascent transcript initiates RNAi- and heterochromatin-dependent gene silencing. Cell 2006; 125(5):873-86. (Pubitemid 43795192)
-
(2006)
Cell
, vol.125
, Issue.5
, pp. 873-886
-
-
Buhler, M.1
Verdel, A.2
Moazed, D.3
-
37
-
-
70349292569
-
Histone H2A.Z cooperates with RNAi and heterochromatin factors to suppress antisense RNAs
-
Zofall M, Fischer T, Zhang K, et al. Histone H2A.Z cooperates with RNAi and heterochromatin factors to suppress antisense RNAs. Nature 2009; 461(7262):419-22.
-
(2009)
Nature
, vol.461
, Issue.7262
, pp. 419-22
-
-
Zofall, M.1
Fischer, T.2
Zhang, K.3
-
38
-
-
54949147637
-
Splicing factors facilitate RNAi-directed silencing in lssion yeast
-
Bayne EH, Portoso M, Kagansky A, et al. Splicing factors facilitate RNAi-directed silencing in lssion yeast. Science 2008; 322(5901):602-6.
-
(2008)
Science
, vol.322
, Issue.5901
, pp. 602-6
-
-
Bayne, E.H.1
Portoso, M.2
Kagansky, A.3
-
39
-
-
77649105301
-
Stc1: A critical link between RNAi and chromatin modication required for heterochromatin integrity
-
Bayne EH, White SA, Kagansky A, et al. Stc1: a critical link between RNAi and chromatin modication required for heterochromatin integrity. Cell 140(5):666-77.
-
Cell
, vol.140
, Issue.5
, pp. 666-77
-
-
Bayne, E.H.1
White, S.A.2
Kagansky, A.3
-
40
-
-
33745951984
-
On the origin and functions of RNA-mediated silencing: From protists to man
-
DOI 10.1007/s00294-006-0078-x
-
Cerutti H, Casas-Mollano JA. On the origin and functions of RNA-mediated silencing: from protists to man. Curr Genet 2006; 50(2):81-99. (Pubitemid 44057103)
-
(2006)
Current Genetics
, vol.50
, Issue.2
, pp. 81-99
-
-
Cerutti, H.1
Casas-Mollano, J.A.2
-
41
-
-
60149098474
-
Small RNAs as guardians of the genome
-
Malone CD, Hannon GJ. Small RNAs as guardians of the genome. Cell 2009; 136(4):656-68.
-
(2009)
Cell
, vol.136
, Issue.4
, pp. 656-68
-
-
Malone, C.D.1
Hannon, G.J.2
-
42
-
-
57849105533
-
The antisense transcriptomes of human cells
-
He Y, Vogelstein B, Velculescu VE,, et al. The antisense transcriptomes of human cells. Science 2008; 322(5909):1855-7.
-
(2008)
Science
, vol.322
, Issue.5909
, pp. 1855-7
-
-
He, Y.1
Vogelstein, B.2
Velculescu, V.E.3
-
43
-
-
24644519490
-
The transcriptional landscape of the mammalian genome
-
Carninci P, Kasukawa T, Katayama S, et al. The transcriptional landscape of the mammalian genome. Science 2005; 309(5740):1559-63.
-
(2005)
Science
, vol.309
, Issue.5740
, pp. 1559-63
-
-
Carninci, P.1
Kasukawa, T.2
Katayama, S.3
-
44
-
-
24644472515
-
Antisense transcription in the mammalian transcriptome
-
Katayama S, Tomaru Y, Kasukawa T, et al. Antisense transcription in the mammalian transcriptome. Science 2005; 309(5740):1564-6.
-
(2005)
Science
, vol.309
, Issue.5740
, pp. 1564-6
-
-
Katayama, S.1
Tomaru, Y.2
Kasukawa, T.3
-
45
-
-
33645785104
-
A high-resolution map of transcription in the yeast genome
-
David L, Huber W, Granovskaia M, et al. A high-resolution map of transcription in the yeast genome. Proc Natl Acad Sci USA 2006; 103(14):5320-5.
-
(2006)
Proc Natl Acad Sci USA
, vol.103
, Issue.14
, pp. 5320-5
-
-
David, L.1
Huber, W.2
Granovskaia, M.3
-
47
-
-
0031832807
-
Transposable elements and genome organization: A comprehensive survey of retrotransposons revealed by the complete Saccharomyces cerevisiae genome sequence
-
Kim JM, Vanguri S, Boeke JD, et al. Transposable elements and genome organization: a comprehensive survey of retrotransposons revealed by the complete Saccharomyces cerevisiae genome sequence. Genome Res 1998; 8(5):464-78. (Pubitemid 28256796)
-
(1998)
Genome Research
, vol.8
, Issue.5
, pp. 464-478
-
-
Kim, J.M.1
Vanguri, S.2
Boeke, J.D.3
Gabriel, A.4
Voytas, D.F.5
-
48
-
-
70349446101
-
Posttranslational interference of Ty1 retrotransposition by antisense RNAs
-
Matsuda E, Garnkel DJ. Posttranslational interference of Ty1 retrotransposition by antisense RNAs. Proc Natl Acad Sci USA 2009; 106(37):15657-62.
-
(2009)
Proc Natl Acad Sci USA
, vol.106
, Issue.37
, pp. 15657-62
-
-
Matsuda, E.1
Garnkel, D.J.2
-
49
-
-
2042437650
-
Initial sequencing and analysis of the human genome
-
DOI 10.1038/35057062
-
Lander ES, Linton LM, Birren B, et al. Initial sequencing and analysis of the human genome. Nature 2001; 409(6822):860-921. (Pubitemid 32165345)
-
(2001)
Nature
, vol.409
, Issue.6822
, pp. 860-921
-
-
Lander, E.S.1
Linton, L.M.2
Birren, B.3
Nusbaum, C.4
Zody, M.C.5
Baldwin, J.6
Devon, K.7
Dewar, K.8
Doyle, M.9
Fitzhugh, W.10
Funke, R.11
Gage, D.12
Harris, K.13
Heaford, A.14
Howland, J.15
Kann, L.16
Lehoczky, J.17
Levine, R.18
McEwan, P.19
McKernan, K.20
Meldrim, J.21
Mesirov, J.P.22
Miranda, C.23
Morris, W.24
Naylor, J.25
Raymond, C.26
Rosetti, M.27
Santos, R.28
Sheridan, A.29
Sougnez, C.30
Stange-Thomann, N.31
Stojanovic, N.32
Subramanian, A.33
Wyman, D.34
Rogers, J.35
Sulston, J.36
Ainscough, R.37
Beck, S.38
Bentley, D.39
Burton, J.40
Clee, C.41
Carter, N.42
Coulson, A.43
Deadman, R.44
Deloukas, P.45
Dunham, A.46
Dunham, I.47
Durbin, R.48
French, L.49
Grafham, D.50
Gregory, S.51
Hubbard, T.52
Humphray, S.53
Hunt, A.54
Jones, M.55
Lloyd, C.56
McMurray, A.57
Matthews, L.58
Mercer, S.59
Milne, S.60
Mullikin, J.C.61
Mungall, A.62
Plumb, R.63
Ross, M.64
Shownkeen, R.65
Sims, S.66
Waterston, R.H.67
Wilson, R.K.68
Hillier, L.W.69
McPherson, J.D.70
Marra, M.A.71
Mardis, E.R.72
Fulton, L.A.73
Chinwalla, A.T.74
Pepin, K.H.75
Gish, W.R.76
Chissoe, S.L.77
more..
-
50
-
-
70449671099
-
Plant responses against invasive nucleic acids: RNA silencing and its suppression by plant viral pathogens
-
Alvarado V, Scholthof HB. Plant responses against invasive nucleic acids: RNA silencing and its suppression by plant viral pathogens. Semin Cell Dev Biol 2009; 20(9):1032-40.
-
(2009)
Semin Cell Dev Biol
, vol.20
, Issue.9
, pp. 1032-40
-
-
Alvarado, V.1
Scholthof, H.B.2
-
51
-
-
58249090017
-
The evolution of RNAi as a defence against viruses and transposable elements
-
Obbard DJ, Gordon KH, Buck AH, et al. The evolution of RNAi as a defence against viruses and transposable elements. Philos Trans R Soc Lond B Biol Sci 2009; 364(1513):99-115.
-
(2009)
Philos Trans R Soc Lond B Biol Sci
, vol.364
, Issue.1513
, pp. 99-115
-
-
Obbard, D.J.1
Gordon, K.H.2
Buck, A.H.3
-
52
-
-
70349295861
-
RNA interference technologies and therapeutics: From basic research to products
-
Lopez-Fraga M, Martinez T, Jimenez A. RNA interference technologies and therapeutics: from basic research to products. BioDrugs 2009; 23(5):305-32.
-
(2009)
BioDrugs
, vol.23
, Issue.5
, pp. 305-32
-
-
Lopez-Fraga, M.1
Martinez, T.2
Jimenez, A.3
-
53
-
-
74049138715
-
Transcriptional regulation by promoter targeted RNAs
-
Suzuki K, Kelleher AD. Transcriptional regulation by promoter targeted RNAs. Curr Top Med Chem 2009; 9(12):1079-87.
-
(2009)
Curr Top Med Chem
, vol.9
, Issue.12
, pp. 1079-87
-
-
Suzuki, K.1
Kelleher, A.D.2
-
55
-
-
67349112845
-
RNA polymerase v transcription guides ARGONAUTE4 to chromatin
-
Wierzbicki AT, Ream TS, Haag JR, et al. RNA polymerase V transcription guides ARGONAUTE4 to chromatin. Nat Genet 2009; 41(5):630-4.
-
(2009)
Nat Genet
, vol.41
, Issue.5
, pp. 630-4
-
-
Wierzbicki, A.T.1
Ream, T.S.2
Haag, J.R.3
-
56
-
-
33751251990
-
Small dsRNAs induce transcriptional activation in human cells
-
DOI 10.1073/pnas.0607015103
-
Li LC, Okino ST, Zhao H, et al. Small dsRNAs induce transcriptional activation in human cells. Proc Natl Acad Sci USA 2006; 103(46):17337-42. (Pubitemid 44788970)
-
(2006)
Proceedings of the National Academy of Sciences of the United States of America
, vol.103
, Issue.46
, pp. 17337-17342
-
-
Li, L.-C.1
Okino, S.T.2
Zhao, H.3
Pookot, D.4
Place, R.F.5
Urakami, S.6
Enokida, H.7
Dahiya, R.8
-
57
-
-
15444368560
-
Decay of mRNAs targeted by RISC requires XRN1, the Ski complex, and the exosome
-
DOI 10.1261/rna.7231505
-
Orban TI, Izaurralde E. Decay of mRNAs targeted by RISC requires XRN1, the Ski complex and the exosome. RNA 2005; 11(4):459-69. (Pubitemid 40397179)
-
(2005)
RNA
, vol.11
, Issue.4
, pp. 459-469
-
-
Orban, T.I.1
Izaurralde, E.2
-
58
-
-
33845957402
-
Untemplated oligoadenylation promotes degradation of RISC-cleaved transcripts
-
DOI 10.1126/science.1135268
-
Ibrahim F, Rohr J, Jeong WJ, et al. Untemplated oligoadenylation promotes degradation of RISC-cleaved transcripts. Science 2006; 314(5807):1893. (Pubitemid 46028499)
-
(2006)
Science
, vol.314
, Issue.5807
, pp. 1893
-
-
Ibrahim, F.1
Rohr, J.2
Jeong, W.-J.3
Hesson, J.4
Cerutti, H.5
-
59
-
-
0037180825
-
The RNA processing exosome is linked to elongating RNA polymerase II in Drosophila
-
DOI 10.1038/nature01181
-
Andrulis ED, Werner J, Nazarian A, et al. The RNA processing exosome is linked to elongating RNA polymerase II in Drosophila. Nature 2002; 420(6917):837-41. (Pubitemid 36019634)
-
(2002)
Nature
, vol.420
, Issue.6917
, pp. 837-841
-
-
Andrulis, E.D.1
Werner, J.2
Nazarian, A.3
Erdjument-Bromage, H.4
Tempst, P.5
Lis, J.T.6
-
60
-
-
33748424364
-
Termination of Cryptic Unstable Transcripts Is Directed by Yeast RNA-Binding Proteins Nrd1 and Nab3
-
DOI 10.1016/j.molcel.2006.07.024, PII S1097276506005259
-
Arigo JT, Eyler DE, Carroll KL, et al. Termination of cryptic unstable transcripts is directed by yeast RNA-binding proteins Nrd1 and Nab3. Mol Cell 2006; 23(6):841-51. (Pubitemid 44344519)
-
(2006)
Molecular Cell
, vol.23
, Issue.6
, pp. 841-851
-
-
Arigo, J.T.1
Eyler, D.E.2
Carroll, K.L.3
Corden, J.L.4
-
61
-
-
33748435751
-
Transcription Termination and Nuclear Degradation of Cryptic Unstable Transcripts: A Role for the Nrd1-Nab3 Pathway in Genome Surveillance
-
DOI 10.1016/j.molcel.2006.07.029, PII S1097276506005314
-
Thiebaut M, Kisseleva-Romanova E, Rougemaille M, et al. Transcription termination and nuclear degradation of cryptic unstable transcripts: a role for the nrd1-nab3 pathway in genome surveillance. Mol Cell 2006; 23(6):853-64. (Pubitemid 44344521)
-
(2006)
Molecular Cell
, vol.23
, Issue.6
, pp. 853-864
-
-
Thiebaut, M.1
Kisseleva-Romanova, E.2
Rougemaille, M.3
Boulay, J.4
Libri, D.5
-
62
-
-
33751506478
-
Distinct Pathways for snoRNA and mRNA Termination
-
DOI 10.1016/j.molcel.2006.11.011, PII S1097276506007829
-
Kim M, Vasiljeva L, Rando OJ, et al. Distinct pathways for snoRNA and mRNA termination. Mol Cell 2006; 24(5):723-34. (Pubitemid 44839221)
-
(2006)
Molecular Cell
, vol.24
, Issue.5
, pp. 723-734
-
-
Kim, M.1
Vasiljeva, L.2
Rando, O.J.3
Zhelkovsky, A.4
Moore, C.5
Buratowski, S.6
-
63
-
-
0035921929
-
RNA-binding protein Nrd1 directs poly(A)-independent 3′-end formation of RNA polymerase II transcripts
-
DOI 10.1038/35095090
-
Steinmetz EJ, Conrad NK, Brow DA, et al. RNA-binding protein Nrd1 directs poly(A)-independent 3′-end formation of RNA polymerase II transcripts. Nature 2001; 413(6853):327-31. (Pubitemid 32905855)
-
(2001)
Nature
, vol.413
, Issue.6853
, pp. 327-331
-
-
Steinmetz, E.J.1
Conrad, N.K.2
Brow, D.A.3
Corden, J.L.4
-
64
-
-
55549098872
-
Stepwise chromatin remodelling by a cascade of transcription initiation of noncoding RNAs
-
Hirota K, Miyoshi T, Kugou K, et al. Stepwise chromatin remodelling by a cascade of transcription initiation of noncoding RNAs. Nature 2008; 456(7218):130-4.
-
(2008)
Nature
, vol.456
, Issue.7218
, pp. 130-4
-
-
Hirota, K.1
Miyoshi, T.2
Kugou, K.3
-
66
-
-
27744533201
-
Regulation of an intergenic transcript controls adjacent gene transcription in Saccharomyces cerevisiae
-
DOI 10.1101/gad.1367605
-
Martens JA, Wu PY, Winston F. Regulation of an intergenic transcript controls adjacent gene transcription in Saccharomyces cerevisiae. Genes Dev 2005; 19(22):2695-704. (Pubitemid 41627936)
-
(2005)
Genes and Development
, vol.19
, Issue.22
, pp. 2695-2704
-
-
Martens, J.A.1
Wu, P.-Y.J.2
Winston, F.3
-
67
-
-
70849098812
-
Toggle involving cis-interfering noncoding RNAs controls variegated gene expression in yeast
-
Bumgarner SL, Dowell RD, Grisá P, et al. Toggle involving cis-interfering noncoding RNAs controls variegated gene expression in yeast. Proc Natl Acad Sci USA 2009; 106(43):18321-6.
-
(2009)
Proc Natl Acad Sci USA
, vol.106
, Issue.43
, pp. 18321-6
-
-
Bumgarner, S.L.1
Dowell, R.D.2
Grisá, P.3
-
68
-
-
55449131096
-
Noncoding transcription by RNA polymerase Pol IVb/Pol v mediates transcriptional silencing of overlapping and adjacent genes
-
Wierzbicki AT, Haag JR, Pikaard CS. Noncoding transcription by RNA polymerase Pol IVb/Pol V mediates transcriptional silencing of overlapping and adjacent genes. Cell 2008; 135(4):635-48.
-
(2008)
Cell
, vol.135
, Issue.4
, pp. 635-48
-
-
Wierzbicki, A.T.1
Haag, J.R.2
Pikaard, C.S.3
-
69
-
-
34147217542
-
Functional dissection of protein complexes involved in yeast chromosome biology using a genetic interaction map
-
DOI 10.1038/nature05649, PII NATURE05649
-
Collins SR, Miller KM, Maas NL, et al. Functional dissection of protein complexes involved in yeast chromosome biology using a genetic interaction map. Nature 2007; 446(7137):806-10. (Pubitemid 46582025)
-
(2007)
Nature
, vol.446
, Issue.7137
, pp. 806-810
-
-
Collins, S.R.1
Miller, K.M.2
Maas, N.L.3
Roguev, A.4
Fillingham, J.5
Chu, C.S.6
Schuldiner, M.7
Gebbia, M.8
Recht, J.9
Shales, M.10
Ding, H.11
Xu, H.12
Han, J.13
Ingvarsdottir, K.14
Cheng, B.15
Andrews, B.16
Boone, C.17
Berger, S.L.18
Hieter, P.19
Zhang, Z.20
Brown, G.W.21
Ingles, C.J.22
Emili, A.23
Allis, C.D.24
Toczyski, D.P.25
Weissman, J.S.26
Greenblatt, J.F.27
Krogan, N.J.28
more..
-
71
-
-
56849094282
-
A genetic interaction map of RNA-processing factors reveals links between Sem1/Dss1-containing complexes and mRNA export and splicing
-
Wilmes GM, Bergkessel M, Bandyopadhyay S, et al. A genetic interaction map of RNA-processing factors reveals links between Sem1/Dss1-containing complexes and mRNA export and splicing. Mol Cell 2008; 32(5):735-46.
-
(2008)
Mol Cell
, vol.32
, Issue.5
, pp. 735-46
-
-
Wilmes, G.M.1
Bergkessel, M.2
Bandyopadhyay, S.3
-
72
-
-
0037154013
-
Evidence that Set1, a factor required for methylation of histone H3, regulates rDNA silencing in S. cerevisiae by a Sir2-independent mechanism
-
DOI 10.1016/S0960-9822(01)00652-2, PII S0960982201006522
-
Bryk M, Briggs SD, Strahl BD, et al. Evidence that Set1, a factor required for methylation of histone H3, regulates rDNA silencing in S. cerevisiae by a Sir2-independent mechanism. Curr Biol 2002; 12(2):165-70. (Pubitemid 34099142)
-
(2002)
Current Biology
, vol.12
, Issue.2
, pp. 165-170
-
-
Bryk, M.1
Briggs, S.D.2
Strahl, B.D.3
Curcio M.Joan4
Allis C.David5
Winston, F.6
-
73
-
-
0035893240
-
Histone H3 lysine 4 methylation is mediated by Set1 and required for cell growth and rDNA silencing in Saccharomyces cerevisiae
-
DOI 10.1101/gad.940201
-
Briggs SD, Bryk M, Strahl BD, et al. Histone H3 lysine 4 methylation is mediated by Set1 and required for cell growth and rDNA silencing in Saccharomyces cerevisiae. Genes Dev 2001; 15(24):3286-95. (Pubitemid 34008193)
-
(2001)
Genes and Development
, vol.15
, Issue.24
, pp. 3286-3295
-
-
Briggs, S.D.1
Bryk, M.2
Strahl, B.D.3
Cheung, W.L.4
Davie, J.K.5
Dent, S.Y.R.6
Winston, F.7
David Allis, C.8
-
74
-
-
69949085947
-
Histone H3 lysine 4 di-methylation: A novel mark for transcriptionaldelity?
-
Pinskaya M, Morillon A. Histone H3 lysine 4 di-methylation: a novel mark for transcriptionaldelity? Epigenetics 2009; 4(5):302-6.
-
(2009)
Epigenetics
, vol.4
, Issue.5
, pp. 302-6
-
-
Pinskaya, M.1
Morillon, A.2
-
75
-
-
33750698262
-
The multiple faces of Set1
-
DOI 10.1139/O06-081
-
Dehe PM, Geli V. The multiple faces of Set1. Biochem Cell Biol 2006; 84(4):536-48. (Pubitemid 44703657)
-
(2006)
Biochemistry and Cell Biology
, vol.84
, Issue.4
, pp. 536-548
-
-
Dehe, P.-M.1
Geli, V.2
-
76
-
-
44649139771
-
Molecular implementation and physiological roles for histone H3 lysine 4 (H3K4) methylation
-
Shilatifard A. Molecular implementation and physiological roles for histone H3 lysine 4 (H3K4) methylation. Curr Opin Cell Biol 2008; 20(3):341-8.
-
(2008)
Curr Opin Cell Biol
, vol.20
, Issue.3
, pp. 341-8
-
-
Shilatifard, A.1
-
77
-
-
36249027156
-
Recognition of Trimethylated Histone H3 Lysine 4 Facilitates the Recruitment of Transcription Postinitiation Factors and Pre-mRNA Splicing
-
DOI 10.1016/j.molcel.2007.11.010, PII S1097276507007447
-
Sims RJ 3rd, Millhouse S, Chen CF, et al. Recognition of trimethylated histone H3 lysine 4 facilitates the recruitment of transcription postinitiation factors and premRNA splicing. Mol Cell 2007; 28(4):665-76. (Pubitemid 350137805)
-
(2007)
Molecular Cell
, vol.28
, Issue.4
, pp. 665-676
-
-
Sims III, R.J.1
Millhouse, S.2
Chen, C.-F.3
Lewis, B.A.4
Erdjument-Bromage, H.5
Tempst, P.6
Manley, J.L.7
Reinberg, D.8
-
78
-
-
26944434789
-
The nucleation and maintenance of heterochromatin by a histone deacetylase in fission yeast
-
DOI 10.1016/j.molcel.2005.10.002, PII S1097276505016722
-
Yamada T, Fischle W, Sugiyama T, et al. The nucleation and maintenance of heterochromatin by a histone deacetylase in lssion yeast. Mol Cell 2005; 20(2):173-85. (Pubitemid 41484164)
-
(2005)
Molecular Cell
, vol.20
, Issue.2
, pp. 173-185
-
-
Yamada, T.1
Fischle, W.2
Sugiyama, T.3
Allis, C.D.4
Grewal, S.I.S.5
-
79
-
-
33646850048
-
Hip3 interacts with the HIRA proteins Hip1 and Slm9 and is required for transcriptional silencing and accurate chromosome segregation
-
DOI 10.1074/jbc.M512170200
-
Greenall A, Williams ES, Martin KA, et al. Hip3 interacts with the HIRA proteins Hip1 and Slm9 and is required for transcriptional silencing and accurate chromosome segregation. J Biol Chem 2006; 281(13):8732-9. (Pubitemid 43847978)
-
(2006)
Journal of Biological Chemistry
, vol.281
, Issue.13
, pp. 8732-8739
-
-
Greenall, A.1
Williams, E.S.2
Martin, K.A.3
Palmer, J.M.4
Gray, J.5
Liu, C.6
Whitehall, S.K.7
-
80
-
-
76249114074
-
Histone variant H2A.Z regulates centromere silencing and chromosome segregation in fission yeast
-
Hou H, Wang Y, Kallgren SP, et al. Histone variant H2A.Z regulates centromere silencing and chromosome segregation in fission yeast. J Biol Chem 285(3):1909-18.
-
J Biol Chem
, vol.285
, Issue.3
, pp. 1909-1918
-
-
Hou, H.1
Wang, Y.2
Kallgren, S.P.3
-
81
-
-
76749158455
-
Sometimes one just isn′t enough: Do vertebrates contain an H2A.Z hyper-variant?
-
Mehta M, Kim HS, Keogh MC. Sometimes one just isn′t enough: do vertebrates contain an H2A.Z hyper-variant? J Biol 9(1):3.
-
J Biol
, vol.9
, Issue.1
, pp. 3
-
-
Mehta, M.1
Kim, H.S.2
Keogh, M.C.3
-
82
-
-
65249153567
-
Regulation of gene expression and cellular proliferation by histone H2A.Z
-
Svotelis A, Gevry N, Gaudreau L. Regulation of gene expression and cellular proliferation by histone H2A.Z. Biochem Cell Biol 2009; 87(1):179-88.
-
(2009)
Biochem Cell Biol
, vol.87
, Issue.1
, pp. 179-88
-
-
Svotelis, A.1
Gevry, N.2
Gaudreau, L.3
-
83
-
-
26844511498
-
Histone variant H2A.Z Marks the 5′ ends of both active and inactive genes in euchromatin
-
DOI 10.1016/j.cell.2005.10.002, PII S0092867405010251
-
Raisner RM, Hartley PD, Meneghini MD, et al. Histone variant H2A.Z marks the 5′ ends of both active and inactive genes in euchromatin. Cell 2005; 123(2):233-48. (Pubitemid 41457214)
-
(2005)
Cell
, vol.123
, Issue.2
, pp. 233-248
-
-
Raisner, R.M.1
Hartley, P.D.2
Meneghini, M.D.3
Bao, M.Z.4
Liu, C.L.5
Schreiber, S.L.6
Rando, O.J.7
Madhani, H.D.8
-
84
-
-
33644778778
-
A DNA integrity network in the yeast Saccharomyces cerevisiae
-
DOI 10.1016/j.cell.2005.12.036, PII S0092867406001188
-
Pan X, Ye P, Yuan DS, et al. A DNA integrity network in the yeast Saccharomyces cerevisiae. Cell 2006; 124(5):1069-81. (Pubitemid 43344244)
-
(2006)
Cell
, vol.124
, Issue.5
, pp. 1069-1081
-
-
Pan, X.1
Ye, P.2
Yuan, D.S.3
Wang, X.4
Bader, J.S.5
Boeke, J.D.6
-
85
-
-
34249025702
-
Contribution of Trf4/5 and the nuclear exosome to genome stability through regulation of histone mRNA levels in Saccharomyces cerevisiae
-
DOI 10.1534/genetics.106.065987
-
Reis CC, Campbell JL. Contribution of Trf4/5 and the nuclear exosome to genome stability through regulation of histone mRNA levels in Saccharomyces cerevisiae. Genetics 2007; 175(3):993-1010. (Pubitemid 46798207)
-
(2007)
Genetics
, vol.175
, Issue.3
, pp. 993-1010
-
-
Reis, C.C.1
Campbell, J.L.2
-
86
-
-
73649112807
-
The nuclear poly(A)-binding protein interacts with the exosome to promote synthesis of noncoding small nucleolar RNAs
-
Lemay JF, DAmours A, Lemieux C, et al. The nuclear poly(A)-binding protein interacts with the exosome to promote synthesis of noncoding small nucleolar RNAs. Mol Cell 37(1):34-45.
-
Mol Cell
, vol.37
, Issue.1
, pp. 34-45
-
-
Lemay, J.F.1
Damours, A.2
Lemieux, C.3
-
87
-
-
33846984935
-
Transcriptional noise and the adelity of initiation by RNA polymerase II
-
Struhl K. Transcriptional noise and the adelity of initiation by RNA polymerase II. Nat Struct Mol Biol 2007; 14(2):103-5.
-
(2007)
Nat Struct Mol Biol
, vol.14
, Issue.2
, pp. 103-5
-
-
Struhl, K.1
-
88
-
-
37349043972
-
Telomeric repeat-containing RNA and RNA surveillance factors at mammalian chromosome ends
-
DOI 10.1126/science.1147182
-
Azzalin CM, Reichenbach P, Khoriauli L, et al. Telomeric repeat containing RNA and RNA surveillance factors at mammalian chromosome ends. Science 2007; 318(5851):798-801. (Pubitemid 351411771)
-
(2007)
Science
, vol.318
, Issue.5851
, pp. 798-801
-
-
Azzalin, C.M.1
Reichenbach, P.2
Khoriauli, L.3
Giulotto, E.4
Lingner, J.5
-
89
-
-
55949106494
-
The Rat1p 5′ to 3′ exonuclease degrades telomeric repeat-containing RNA and promotes telomere elongation in Saccharomyces cerevisiae
-
Luke B, Panza A, Redon S, et al. The Rat1p 5′ to 3′ exonuclease degrades telomeric repeat-containing RNA and promotes telomere elongation in Saccharomyces cerevisiae. Mol Cell 2008; 32(4):465-77.
-
(2008)
Mol Cell
, vol.32
, Issue.4
, pp. 465-77
-
-
Luke, B.1
Panza, A.2
Redon, S.3
-
90
-
-
77649189256
-
Chromatin regulation and noncoding RNAs at mammalian telomeres
-
Schoeftner S, Blasco MA. Chromatin regulation and noncoding RNAs at mammalian telomeres. Semin Cell Dev Biol 2009.
-
(2009)
Semin Cell Dev Biol
-
-
Schoeftner, S.1
Blasco, M.A.2
-
91
-
-
69249216410
-
A′ higher order′ of telomere regulation: Telomere heterochromatin and telomeric RNAs
-
Schoeftner S, Blasco MA. A ′higher order′ of telomere regulation: telomere heterochromatin and telomeric RNAs. Embo J 2009; 28(16):2323-36.
-
(2009)
Embo J
, vol.28
, Issue.16
, pp. 2323-36
-
-
Schoeftner, S.1
Blasco, M.A.2
-
92
-
-
38849111756
-
Developmentally regulated transcription of mammalian telomeres by DNA-dependent RNA polymerase II
-
DOI 10.1038/ncb1685, PII NCB1685
-
Schoeftner S, Blasco MA. Developmentally regulated transcription of mammalian telomeres by DNA-dependent RNA polymerase II. Nat Cell Biol 2008; 10(2):228-36. (Pubitemid 351194053)
-
(2008)
Nature Cell Biology
, vol.10
, Issue.2
, pp. 228-236
-
-
Schoeftner, S.1
Blasco, M.A.2
-
93
-
-
68949198783
-
TERRA RNA binding to TRF2 facilitates heterochromatin formation and ORC recruitment at telomeres
-
Deng Z, Norseen J, Wiedmer A, et al. TERRA RNA binding to TRF2 facilitates heterochromatin formation and ORC recruitment at telomeres. Mol Cell 2009; 35(4):403-13.
-
(2009)
Mol Cell
, vol.35
, Issue.4
, pp. 403-13
-
-
Deng, Z.1
Norseen, J.2
Wiedmer, A.3
-
94
-
-
0347988045
-
Epigenetic regulation of telomere length in mammalian cells by the Suv39h1 and Suv39h2 histone methyltransferases
-
DOI 10.1038/ng1278
-
Garcia-Cao M, OSullivan R, Peters AH, et al. Epigenetic regulation of telomere length in mammalian cells by the Suv39h1 and Suv39h2 histone methyltransferases. Nat Genet 2004; 36(1):94-9. (Pubitemid 38056214)
-
(2004)
Nature Genetics
, vol.36
, Issue.1
, pp. 94-99
-
-
Garcia-Cao, M.1
O'Sullivan, R.2
Peters, A.H.F.M.3
Jenuwein, T.4
Blasco, M.A.5
-
95
-
-
0027944347
-
TLC1: Template RNA component of Saccharomyces cerevisiae telomerase
-
Singer MS, Gottschling DE. TLC1: template RNA component of Saccharomyces cerevisiae telomerase. Science 1994; 266(5184):404-9. (Pubitemid 24348957)
-
(1994)
Science
, vol.266
, Issue.5184
, pp. 404-409
-
-
Singer, M.S.1
Gottschling, D.E.2
-
96
-
-
0031658303
-
Identification of high-copy disruptors of telomeric silencing in Saccharomyces cerevisiae
-
Singer MS, Kahana A, Wolf AJ, et al. Identication of high-copy disruptors of telomeric silencing in Saccharomyces cerevisiae. Genetics 1998; 150(2):613-32. (Pubitemid 28463040)
-
(1998)
Genetics
, vol.150
, Issue.2
, pp. 613-632
-
-
Singer, M.S.1
Kahana, A.2
Wolf, A.J.3
Meisinger, L.L.4
Peterson, S.E.5
Goggin, C.6
Mahowald, M.7
Gottschling, D.E.8
-
97
-
-
33746261445
-
The double life of UPF1 in RNA and DNA stability pathways
-
Azzalin CM, Lingner J. The double life of UPF1 in RNA and DNA stability pathways. Cell Cycle 2006; 5(14):1496-8. (Pubitemid 44091966)
-
(2006)
Cell Cycle
, vol.5
, Issue.14
, pp. 1496-1498
-
-
Azzalin, C.M.1
Lingner, J.2
-
98
-
-
32944458421
-
The human RNA surveillance factor UPF1 is required for S phase progression and genome stability
-
DOI 10.1016/j.cub.2006.01.018, PII S0960982206000959
-
Azzalin CM, Lingner J. The human RNA surveillance factor UPF1 is required for S phase progression and genome stability. Curr Biol 2006; 16(4):433-9. (Pubitemid 43259356)
-
(2006)
Current Biology
, vol.16
, Issue.4
, pp. 433-439
-
-
Azzalin, C.M.1
Lingner, J.2
-
99
-
-
36749029313
-
Protein-RNA and protein-protein interactions mediate association of human EST1A/SMG6 with telomerase
-
DOI 10.1093/nar/gkm724
-
Redon S, Reichenbach P, Lingner J. Protein RNA and protein protein interactions mediate association of human EST1A/SMG6 with telomerase. Nucleic Acids Res 2007; 35(20):7011-22. (Pubitemid 350201819)
-
(2007)
Nucleic Acids Research
, vol.35
, Issue.20
, pp. 7011-7022
-
-
Redon, S.1
Reichenbach, P.2
Lingner, J.3
-
100
-
-
69949159297
-
Pervasive transcription constitutes a new level of eukaryotic genome regulation
-
Berretta J, Morillon A. Pervasive transcription constitutes a new level of eukaryotic genome regulation. EMBO Rep 2009; 10(9):973-82.
-
(2009)
EMBO Rep
, vol.10
, Issue.9
, pp. 973-82
-
-
Berretta, J.1
Morillon, A.2
-
101
-
-
68249083958
-
Distinct roles of noncanonical poly(A) polymerases in RNA metabolism
-
San Paolo S, Vanacova S, Schenk L, et al. Distinct roles of noncanonical poly(A) polymerases in RNA metabolism. PLoS Genet 2009; 5(7):e1000555.
-
(2009)
PLoS Genet
, vol.5
, Issue.7
-
-
San Paolo, S.1
Vanacova, S.2
Schenk, L.3
-
102
-
-
0030721677
-
Polyadenylation of telomerase RNA in budding yeast
-
Chapon C, Cech TR, Zaug AJ. Polyadenylation of telomerase RNA in budding yeast. RNA 1997; 3(11):1337-51. (Pubitemid 27495104)
-
(1997)
RNA
, vol.3
, Issue.11
, pp. 1337-1351
-
-
Chapon, C.1
Cech, T.R.2
Zaug, A.J.3
-
103
-
-
2942532256
-
A genome-wide screen for Saccharomyces cerevisiae deletion mutants that affect telomere length
-
DOI 10.1073/pnas.0401263101
-
Askree SH, Yehuda T, Smolikov S, et al. A genome-wide screen for Saccharomyces cerevisiae deletion mutants that affect telomere length. Proc Natl Acad Sci USA 2004; 101(23):8658-63. (Pubitemid 38745827)
-
(2004)
Proceedings of the National Academy of Sciences of the United States of America
, vol.101
, Issue.23
, pp. 8658-8663
-
-
Askree, S.H.1
Yehuda, T.2
Smolikov, S.3
Gurevich, R.4
Hawk, J.5
Coker, C.6
Krauskopf, A.7
Kupiec, M.8
McEachern, M.J.9
-
104
-
-
40349116304
-
A cryptic unstable transcript mediates transcriptional trans-silencing of the Ty1 retrotransposon in S. cerevisiae
-
DOI 10.1101/gad.458008
-
Berretta J, Pinskaya M, Morillon A. A cryptic unstable transcript mediates transcriptional trans-silencing of the Ty1 retrotransposon in S. cerevisiae. Genes Dev 2008; 22(5):615-26. (Pubitemid 351342434)
-
(2008)
Genes and Development
, vol.22
, Issue.5
, pp. 615-626
-
-
Berretta, J.1
Pinskaya, M.2
Morillon, A.3
-
105
-
-
67649666831
-
Trans-acting antisense RNAs mediate transcriptional gene cosuppression in S. cerevisiae
-
Camblong J, Beyrouthy N, Guffanti E, et al. Trans-acting antisense RNAs mediate transcriptional gene cosuppression in S. cerevisiae. Genes Dev 2009; 23(13):1534-45.
-
(2009)
Genes Dev
, vol.23
, Issue.13
, pp. 1534-45
-
-
Camblong, J.1
Beyrouthy, N.2
Guffanti, E.3
-
106
-
-
36048951040
-
Antisense RNA Stabilization Induces Transcriptional Gene Silencing via Histone Deacetylation in S. cerevisiae
-
DOI 10.1016/j.cell.2007.09.014, PII S0092867407012019
-
Camblong J, Iglesias N, Fickentscher C, et al. Antisense RNA stabilization induces transcriptional gene silencing via histone deacetylation in S. cerevisiae. Cell 2007; 131(4):706-17. (Pubitemid 350087198)
-
(2007)
Cell
, vol.131
, Issue.4
, pp. 706-717
-
-
Camblong, J.1
Iglesias, N.2
Fickentscher, C.3
Dieppois, G.4
Stutz, F.5
-
107
-
-
33344461310
-
A transient heterochromatic state in Xist preempts X inactivation choice without RNA stabilization
-
DOI 10.1016/j.molcel.2006.01.028, PII S1097276506000505
-
Sun BK, Deaton AM, Lee JT. A transient heterochromatic state in Xist preempts X inactivation choice without RNA stabilization. Mol Cell 2006; 21(5):617-28. (Pubitemid 43290729)
-
(2006)
Molecular Cell
, vol.21
, Issue.5
, pp. 617-628
-
-
Sun, B.K.1
Deaton, A.M.2
Lee, J.T.3
-
108
-
-
33846032330
-
Xist and the order of silencing
-
DOI 10.1038/sj.embor.7400871, PII 7400871
-
Ng K, Pullirsch D, Leeb M, et al. Xist and the order of silencing. EMBO Rep 2007; 8(1):34-9. (Pubitemid 46043797)
-
(2007)
EMBO Reports
, vol.8
, Issue.1
, pp. 34-39
-
-
Ng, K.1
Pullirsch, D.2
Leeb, M.3
Wutz, A.4
-
109
-
-
7744228427
-
Polycomb group proteins ring1A/B link ubiquitylation of histone H2A to heritable gene silencing and X inactivation
-
DOI 10.1016/j.devcel.2004.10.005, PII S1534580704003673
-
de Napoles M, Mermoud JE, Wakao R, et al. Polycomb group proteins Ring1A/B link ubiquitylation of histone H2A to heritable gene silencing and X inactivation. Dev Cell 2004; 7(5):663-76. (Pubitemid 39462687)
-
(2004)
Developmental Cell
, vol.7
, Issue.5
, pp. 663-676
-
-
De Napoles, M.1
Mermoud, J.E.2
Wakao, R.3
Tang, Y.A.4
Endoh, M.5
Appanah, R.6
Nesterova, T.B.7
Silva, J.8
Otte, A.P.9
Vidal, M.10
Koseki, H.11
Brockdorff, N.12
-
110
-
-
68149144367
-
High-resolution analysis of epigenetic changes associated with X inactivation
-
Marks H, Chow JC, Denissov S, et al. High-resolution analysis of epigenetic changes associated with X inactivation. Genome Res 2009; 19(8):1361-73.
-
(2009)
Genome Res
, vol.19
, Issue.8
, pp. 1361-73
-
-
Marks, H.1
Chow, J.C.2
Denissov, S.3
-
111
-
-
33745712580
-
Nuclear mRNA degradation pathway(s) are implicated in Xist regulation and X chromosome inactivation
-
Ciaudo C, Bourdet A, Cohen-Tannoudji M, et al. Nuclear mRNA degradation pathway(s) are implicated in Xist regulation and X chromosome inactivation. PLoS Genet 2006; 2(6):e94.
-
(2006)
PLoS Genet
, vol.2
, Issue.6
-
-
Ciaudo, C.1
Bourdet, A.2
Cohen-Tannoudji, M.3
-
112
-
-
0035875043
-
Tsix-mediated repression of Xist accumulation is not sufficient for normal random X inactivation
-
Morey C, Arnaud D, Avner P, et al. Tsix-mediated repression of Xist accumulation is not sufcient for normal random X inactivation. Hum Mol Genet 2001; 10(13):1403-11. (Pubitemid 32640669)
-
(2001)
Human Molecular Genetics
, vol.10
, Issue.13
, pp. 1403-1411
-
-
Morey, C.1
Arnaud, D.2
Avner, P.3
Clerc, P.4
-
113
-
-
45549098196
-
Intersection of the RNA interference and X-inactivation pathways
-
DOI 10.1126/science.1157676
-
Ogawa Y, Sun BK, Lee JT. Intersection of the RNA interference and X-inactivation pathways. Science 2008; 320(5881):1336-41. (Pubitemid 351929469)
-
(2008)
Science
, vol.320
, Issue.5881
, pp. 1336-1341
-
-
Ogawa, Y.1
Sun, B.K.2
Lee, J.T.3
-
114
-
-
59049101616
-
Dicer regulates Xist promoter methylation in ES cells indirectly through transcriptional control of Dnmt3a
-
Nesterova TB, Popova BC, Cobb BS, et al. Dicer regulates Xist promoter methylation in ES cells indirectly through transcriptional control of Dnmt3a. Epigenetics Chromatin 2008; 1(1):2.
-
(2008)
Epigenetics Chromatin
, vol.1
, Issue.1
, pp. 2
-
-
Nesterova, T.B.1
Popova, B.C.2
Cobb, B.S.3
-
115
-
-
66349100230
-
Akhtar A. roX RNAs: Noncoding regulators of the male X chromosome in lies
-
Ilik I, Akhtar A. roX RNAs: noncoding regulators of the male X chromosome in lies. RNA Biol 2009; 6(2):113-21.
-
(2009)
RNA Biol
, vol.6
, Issue.2
, pp. 113-21
-
-
Ilik, I.1
-
116
-
-
33644870525
-
Nuclear pore components are involved in the transcriptional regulation of dosage compensation in Drosophila
-
DOI 10.1016/j.molcel.2006.02.007, PII S109727650600089X
-
Mendjan S, Taipale M, Kind J, et al. Nuclear pore components are involved in the transcriptional regulation of dosage compensation in Drosophila. Mol Cell 2006; 21(6):811-23. (Pubitemid 43376131)
-
(2006)
Molecular Cell
, vol.21
, Issue.6
, pp. 811-823
-
-
Mendjan, S.1
Taipale, M.2
Kind, J.3
Holz, H.4
Gebhardt, P.5
Schelder, M.6
Vermeulen, M.7
Buscaino, A.8
Duncan, K.9
Mueller, J.10
Wilm, M.11
Stunnenberg, H.G.12
Saumweber, H.13
Akhtar, A.14
-
117
-
-
33746016283
-
Conserved Ribonuclease, Eri1, Negatively Regulates Heterochromatin Assembly in Fission Yeast
-
DOI 10.1016/j.cub.2006.05.061, PII S0960982206016800
-
Iida T, Kawaguchi R, Nakayama J. Conserved ribonuclease, Eri1, negatively regulates heterochromatin assembly in fission yeast. Curr Biol 2006; 16(14):1459-64. (Pubitemid 44066777)
-
(2006)
Current Biology
, vol.16
, Issue.14
, pp. 1459-1464
-
-
Iida, T.1
Kawaguchi, R.2
Nakayama, J.-i.3
-
118
-
-
79960692865
-
Uridylation of mature miRNAs and siRNAs by the MUT68 nucleotidyltransferase promotes their degradation in Chlamydomonas
-
Ibrahim F, Rymarquis LA, Kim EJ, et al. Uridylation of mature miRNAs and siRNAs by the MUT68 nucleotidyltransferase promotes their degradation in Chlamydomonas. Proc Natl Acad Sci USA.
-
Proc Natl Acad Sci USA
-
-
Ibrahim, F.1
Rymarquis, L.A.2
Kim, E.J.3
-
119
-
-
70349442298
-
CDE-1 affects chromosome segregation through uridylation of CSR-1-bound siRNAs
-
van Wolfswinkel JC, Claycomb JM, Batista PJ, et al. CDE-1 affects chromosome segregation through uridylation of CSR-1-bound siRNAs. Cell 2009; 139(1):135-48.
-
(2009)
Cell
, vol.139
, Issue.1
, pp. 135-48
-
-
Van Wolfswinkel, J.C.1
Claycomb, J.M.2
Batista, P.J.3
|