메뉴 건너뛰기




Volumn 3, Issue , 2010, Pages 120-154

Clustering algorithms in biomedical research: A review

Author keywords

Biomedical engineering; clustering algorithms; evolutionary computation; neural networks; unsupervised learning

Indexed keywords

BIOMEDICAL APPLICATIONS; BIOMEDICAL RESEARCH; DOCUMENT MINING; EVOLUTIONARY COMPUTATIONS; GENE EXPRESSION DATA ANALYSIS; GENOMIC SEQUENCE; STATUS QUO;

EID: 78650121315     PISSN: 19373333     EISSN: None     Source Type: Journal    
DOI: 10.1109/RBME.2010.2083647     Document Type: Review
Times cited : (282)

References (315)
  • 2
    • 16444383160 scopus 로고    scopus 로고
    • Survey of clustering algorithms
    • Jun.
    • R. Xu and D. Wunsch, II, "Survey of clustering algorithms," IEEE Trans. Neural Networks, vol. 16, no. 3, pp. 645-678, Jun. 2005.
    • (2005) IEEE Trans. Neural Networks , vol.16 , Issue.3 , pp. 645-678
    • Xu, R.1    Wunsch II, D.2
  • 7
    • 65549104397 scopus 로고    scopus 로고
    • A roadmap of clustering algorithms: Finding a match for a biomedical application
    • B. Andreopoulos, A. An, X. Wang, and M. Schroeder, "A roadmap of clustering algorithms: Finding a match for a biomedical application," Briefings Bioinformatics, vol. 10, no. 3, pp. 297-314, 2009.
    • (2009) Briefings Bioinformatics , vol.10 , Issue.3 , pp. 297-314
    • Andreopoulos, B.1    An, A.2    Wang, X.3    Schroeder, M.4
  • 8
    • 0036565002 scopus 로고    scopus 로고
    • Constructive feedforward ART clustering networks - Part I and II
    • Jun.
    • A. Baraldi and E. Alpaydin, "Constructive feedforward ART clustering networks - Part I and II," IEEE Trans. Neural Networks, vol. 13, no. 3, pp. 645-677, Jun. 2002.
    • (2002) IEEE Trans. Neural Networks , vol.13 , Issue.3 , pp. 645-677
    • Baraldi, A.1    Alpaydin, E.2
  • 9
    • 84893405732 scopus 로고    scopus 로고
    • Data clustering: A review
    • A. Jain, M. Murty, and P. Flynn, "Data clustering: A review," ACM Comput. Surv., vol. 31, no. 3, pp. 264-323, 1999.
    • (1999) ACM Comput. Surv. , vol.31 , Issue.3 , pp. 264-323
    • Jain, A.1    Murty, M.2    Flynn, P.3
  • 10
    • 0000950204 scopus 로고    scopus 로고
    • Cluster analysis and mathematical programming
    • P. Hansen and B. Jaumard, "Cluster analysis and mathematical programming," Math. Programming, vol. 79, pp. 191-215, 1997.
    • (1997) Math. Programming , vol.79 , pp. 191-215
    • Hansen, P.1    Jaumard, B.2
  • 15
    • 33747044600 scopus 로고
    • Metric and euclidean properties of dissimilarity coefficients
    • J. Gower and P. Legendre, "Metric and Euclidean properties of dissimilarity coefficients," J. Classification, vol. 3, pp. 5-48, 1986.
    • (1986) J. Classification , vol.3 , pp. 5-48
    • Gower, J.1    Legendre, P.2
  • 17
    • 0001457509 scopus 로고
    • Some methods for classification and analysis of multivariate observations
    • J. MacQueen, "Some methods for classification and analysis of multivariate observations," in Proc. Fifth Berkeley Symp., 1967, vol. 1, pp. 281-297.
    • (1967) Proc. Fifth Berkeley Symp. , vol.1 , pp. 281-297
    • MacQueen, J.1
  • 18
    • 0000014486 scopus 로고
    • Cluster analysis of multivariate data: Efficiency vs. Interpretability of classifications
    • E. Forgy, "Cluster analysis of multivariate data: Efficiency vs. interpretability of classifications," Biometrics, vol. 21, pp. 768-780, 1965.
    • (1965) Biometrics , vol.21 , pp. 768-780
    • Forgy, E.1
  • 19
    • 0014060964 scopus 로고
    • A clustering technique for summarizing multivariate data
    • G. Ball and D. Hall, "A clustering technique for summarizing multivariate data," Behavioral Sci., vol. 12, pp. 153-155, 1967.
    • (1967) Behavioral Sci. , vol.12 , pp. 153-155
    • Ball, G.1    Hall, D.2
  • 20
    • 0026408256 scopus 로고
    • Fuzzy ART: Fast stable learning and categorization of analog patterns by an adaptive resonance system
    • G. Carpenter, S. Grossberg, and D. Rosen, "Fuzzy ART: Fast stable learning and categorization of analog patterns by an adaptive resonance System," Neural Networks, vol. 4, pp. 759-771, 1991.
    • (1991) Neural Networks , vol.4 , pp. 759-771
    • Carpenter, G.1    Grossberg, S.2    Rosen, D.3
  • 23
    • 0029752880 scopus 로고    scopus 로고
    • A self-organizing network for hyperellipsoidal clustering (HEC)
    • Feb.
    • J. Mao and A. Jain, "A self-organizing network for hyperellipsoidal clustering (HEC)," IEEE Trans. Neural Networks, vol. 7, no. 1, pp. 16-29, Feb. 1996.
    • (1996) IEEE Trans. Neural Networks , vol.7 , Issue.1 , pp. 16-29
    • Mao, J.1    Jain, A.2
  • 24
    • 0032441150 scopus 로고    scopus 로고
    • Cluster analysis and display of genome-wide expression patterns
    • M. Eisen, P. Spellman, P. Brown, and D. Botstein, "Cluster analysis and display of genome-wide expression patterns," Proc. Nat. Academic Sci. USA 95, vol. 95, no. 25, pp. 14863-14868, 1998.
    • (1998) Proc. Nat. Academic Sci. USA 95 , vol.95 , Issue.25 , pp. 14863-14868
    • Eisen, M.1    Spellman, P.2    Brown, P.3    Botstein, D.4
  • 25
    • 0035365076 scopus 로고    scopus 로고
    • A modified version of the K-means algorithm with a distance based on cluster symmetry
    • Jun.
    • M. Su and C. Chou, "A modified version of the K-means algorithm with a distance based on cluster symmetry," IEEE Trans. Pattern Anal. Machine Intell., vol. 23, no. 6, pp. 674-680, Jun. 2001.
    • (2001) IEEE Trans. Pattern Anal. Machine Intell. , vol.23 , Issue.6 , pp. 674-680
    • Su, M.1    Chou, C.2
  • 26
    • 34547681969 scopus 로고    scopus 로고
    • GAPS: A clustering method using a new point symmetry based distance measure
    • S. Bandyopadhyay and S. Saha, "GAPS: A clustering method using a new point symmetry based distance measure," Pattern Recognition, vol. 40, pp. 3430-3451, 2007.
    • (2007) Pattern Recognition , vol.40 , pp. 3430-3451
    • Bandyopadhyay, S.1    Saha, S.2
  • 28
    • 0034228041 scopus 로고    scopus 로고
    • ROCK: A robust clustering algorithm for categorical attributes
    • S. Guha, R. Rastogi, and K. Shim, "ROCK: A robust clustering algorithm for categorical attributes," Inform. Syst., vol. 25, no. 5, pp. 345-366, 2000.
    • (2000) Inform. Syst. , vol.25 , Issue.5 , pp. 345-366
    • Guha, S.1    Rastogi, R.2    Shim, K.3
  • 29
    • 0041490380 scopus 로고    scopus 로고
    • Cluster validation
    • C. Hayashi, N. Ohsumi, K. Yajima, Y. Tanaka, H. Bock, and Y. Bada, Eds. New York: Springer-Verlag
    • A. Gordon, "Cluster validation," in Data Science, Classification, and Related Methods, C. Hayashi, N. Ohsumi, K. Yajima, Y. Tanaka, H. Bock, and Y. Bada, Eds. New York: Springer-Verlag, 1998, pp. 22-39.
    • (1998) Data Science, Classification, and Related Methods , pp. 22-39
    • Gordon, A.1
  • 30
  • 31
    • 0001994373 scopus 로고
    • Cluster analysis and related issue
    • C. Chen, L. Pau, and P. Wang, Eds. River Edge, NJ: World Science
    • R. Dubes, "Cluster analysis and related issue," in Handbook of Pattern Recognition and Computer Vision, C. Chen, L. Pau, and P. Wang, Eds. River Edge, NJ: World Science, 1993, pp. 3-32.
    • (1993) Handbook of Pattern Recognition and Computer Vision , pp. 3-32
    • Dubes, R.1
  • 33
    • 0000008146 scopus 로고
    • Comparing partitions
    • L. Hubert and P. Arabie, "Comparing partitions," J. Classification, vol. 2, pp. 193-218, 1985.
    • (1985) J. Classification , vol.2 , pp. 193-218
    • Hubert, L.1    Arabie, P.2
  • 34
    • 84948872101 scopus 로고
    • A study of the comparability of external criteria for hierarchical cluster analysis
    • G. Milligan and M. Cooper, "A study of the comparability of external criteria for hierarchical cluster analysis," Multivariate Behavioral Res., vol. 21, pp. 441-458, 1986.
    • (1986) Multivariate Behavioral Res. , vol.21 , pp. 441-458
    • Milligan, G.1    Cooper, M.2
  • 35
    • 4344611435 scopus 로고    scopus 로고
    • Properties of the hubert-arabie adjusted rand index
    • D. Steinley, "Properties of the Hubert-Arabie adjusted Rand index," Psychological Methods, vol. 9, no. 3, pp. 386-396, 2004.
    • (2004) Psychological Methods , vol.9 , Issue.3 , pp. 386-396
    • Steinley, D.1
  • 36
    • 34250115918 scopus 로고
    • An examination of procedures for determining the number of clusters in a data set
    • G. Milligan and M. Cooper, "An examination of procedures for determining the number of clusters in a data set," Psychometrika, vol. 50, pp. 159-179, 1985.
    • (1985) Psychometrika , vol.50 , pp. 159-179
    • Milligan, G.1    Cooper, M.2
  • 38
    • 53149106965 scopus 로고    scopus 로고
    • A point symmetry-based clustering technique for automatic evolution of clusters
    • Nov.
    • S. Bandyopadhyay and S. Saha, "A point symmetry-based clustering technique for automatic evolution of clusters," IEEE Trans. Knowledge Data Eng., vol. 20, no. 11, pp. 1441-1457, Nov. 2008.
    • (2008) IEEE Trans. Knowledge Data Eng. , vol.20 , Issue.11 , pp. 1441-1457
    • Bandyopadhyay, S.1    Saha, S.2
  • 40
    • 0029360028 scopus 로고
    • On cluster validity for the fuzzy c-means model
    • Mar.
    • N. Pal and J. Bezdek, "On cluster validity for the fuzzy c-means model," IEEE Trans. Fuzzy Syst., vol. 3, no. 3, pp. 370-379, Mar. 1995.
    • (1995) IEEE Trans. Fuzzy Syst. , vol.3 , Issue.3 , pp. 370-379
    • Pal, N.1    Bezdek, J.2
  • 41
    • 0003126317 scopus 로고
    • A general theory of classification sorting strategies: 1. Hierarchical systems
    • G. Lance and W. Williams, "A general theory of classification sorting strategies: 1. Hierarchical systems," Computer J., vol. 9, pp. 373-380, 1967.
    • (1967) Computer J. , vol.9 , pp. 373-380
    • Lance, G.1    Williams, W.2
  • 43
    • 0028806048 scopus 로고
    • Quantitative monitoring of gene expression patterns with a complementary DNA microarray
    • M. Schena, D. Shalon, R. Davis, and P. Brown, "Quantitative monitoring of gene expression patterns with a complementary DNA microarray," Science, vol. 270, no. 5235, pp. 467-470, 1995.
    • (1995) Science , vol.270 , Issue.5235 , pp. 467-470
    • Schena, M.1    Shalon, D.2    Davis, R.3    Brown, P.4
  • 44
    • 13844276694 scopus 로고    scopus 로고
    • Cluster analysis for gene expression data: A survey
    • D. Jiang, C. Tang, and A. Zhang, "Cluster analysis for gene expression data: A survey," IEEE Trans. Knowledge Data Eng., vol. 16, no. 11, pp. 1370-1386, 2004.
    • (2004) IEEE Trans. Knowledge Data Eng. , vol.16 , Issue.11 , pp. 1370-1386
    • Jiang, D.1    Tang, C.2    Zhang, A.3
  • 46
    • 0013224530 scopus 로고    scopus 로고
    • Functional bioinformatics of microarray data: From expression to regulation
    • Nov.
    • Y. Moreau, F. Smet, G. Thijs, K. Marchal, and B. Moor, "Functional bioinformatics of microarray data: From expression to regulation," Proc. IEEE, vol. 90, no. 11, pp. 1722-1743, Nov. 2002.
    • (2002) Proc. IEEE , vol.90 , Issue.11 , pp. 1722-1743
    • Moreau, Y.1    Smet, F.2    Thijs, G.3    Marchal, K.4    Moor, B.5
  • 47
    • 0033536012 scopus 로고    scopus 로고
    • Broad patterns of gene expression revealed by clustering analysis of tumor and normal colon tissues probed by oligonucleotide arrays
    • U. Alon, N. Barkai, D. Notterman, K. Gish, S. Ybarra, D. Mack, and A. Levine, "Broad patterns of gene expression revealed by clustering analysis of tumor and normal colon tissues probed by oligonucleotide arrays," Proc. Nat. Academy Sci., USA, vol. 96, no. 12, pp. 6745-6750, 1999.
    • (1999) Proc. Nat. Academy Sci., USA , vol.96 , Issue.12 , pp. 6745-6750
    • Alon, U.1    Barkai, N.2    Notterman, D.3    Gish, K.4    Ybarra, S.5    Mack, D.6    Levine, A.7
  • 50
    • 0032441150 scopus 로고    scopus 로고
    • Cluster analysis and display of genome-wide expression patterns
    • M. Eisen, P. Spellman, P. Brown, and D. Botstein, "Cluster analysis and display of genome-wide expression patterns," Proc. Nat. Academic Sci. USA, vol. 95, no. 25, pp. 14863-14868, 1998.
    • (1998) Proc. Nat. Academic Sci. USA , vol.95 , Issue.25 , pp. 14863-14868
    • Eisen, M.1    Spellman, P.2    Brown, P.3    Botstein, D.4
  • 51
    • 0031742022 scopus 로고    scopus 로고
    • Comprehensive identification of cell cycle-regulated genes of the yeast saccharomyces cerevisiae by microarray hybridization
    • P. Spellman, G. Sherlock, M. Ma, V. Iyer, K. Anders, M. Eisen, P. Brown, D. Botstein, and B. Futcher, "Comprehensive identification of cell cycle-regulated genes of the yeast saccharomyces cerevisiae by microarray hybridization," Molecular Biol. Cell, vol. 9, pp. 3273-3297, 1998.
    • (1998) Molecular Biol. Cell , vol.9 , pp. 3273-3297
    • Spellman, P.1    Sherlock, G.2    Ma, M.3    Iyer, V.4    Anders, K.5    Eisen, M.6    Brown, P.7    Botstein, D.8    Futcher, B.9
  • 59
    • 33747479974 scopus 로고
    • Sur la division des corps materiels en parties
    • H. Steinhaus, "Sur la division des corps materiels en parties," Bull. Acad. Polon. Sci., C1. III, vol. IV, pp. 801-804, 1956.
    • (1956) Bull. Acad. Polon. Sci., C1. III , vol.4 , pp. 801-804
    • Steinhaus, H.1
  • 60
    • 0020102027 scopus 로고
    • Least squared quantization in PCM
    • S. Lloyd, "Least squared quantization in PCM," IEEE Trans. Information Theory, vol. IT-28, no. 2, pp. 129-137, 1982.
    • (1982) IEEE Trans. Information Theory , vol.IT-28 , Issue.2 , pp. 129-137
    • Lloyd, S.1
  • 61
    • 0018918171 scopus 로고
    • An algorithm for vector quantizer design
    • Jan.
    • Y. Linde, A. Buzo, and R. Gray, "An algorithm for vector quantizer design," IEEE Trans. Commun., vol. COM-28, no. 1, pp. 84-95, Jan. 1980.
    • (1980) IEEE Trans. Commun. , vol.COM-28 , Issue.1 , pp. 84-95
    • Linde, Y.1    Buzo, A.2    Gray, R.3
  • 63
    • 27144536001 scopus 로고    scopus 로고
    • Extensions to the K-means algorithm for clustering large data sets with categorical values
    • Z. Huang, "Extensions to the K-means algorithm for clustering large data sets with categorical values," Data Mining Knowledge Discovery 2, pp. 283-304, 1998.
    • (1998) Data Mining Knowledge Discovery 2 , pp. 283-304
    • Huang, Z.1
  • 64
    • 0033028596 scopus 로고    scopus 로고
    • Systematic determination of genetic network architecture
    • S. Tavazoie, J. Hughes, M. Campbell, R. Cho, and G. Church, "Systematic determination of genetic network architecture," Nature Genetics, vol. 22, pp. 281-285, 1999.
    • (1999) Nature Genetics , vol.22 , pp. 281-285
    • Tavazoie, S.1    Hughes, J.2    Campbell, M.3    Cho, R.4    Church, G.5
  • 65
    • 0345580221 scopus 로고    scopus 로고
    • Large-scale clustering of cDNA-fingerprinting data
    • Ralf-Herwig, A. Poustka, C. Müller, C. Bull, H. Lehrach, and J. O'Brien, "Large-scale clustering of cDNA-fingerprinting data," Genome Res., vol. 9, no. 11, pp. 1093-1105, 1999.
    • (1999) Genome Res. , vol.9 , Issue.11 , pp. 1093-1105
    • Ralf-Herwig, A.1    Poustka, C.2    Bull, M.D.L.3    Lehrach, H.4    O'Brien, J.5
  • 66
    • 17244380380 scopus 로고    scopus 로고
    • A survey of current work in biomedical text mining
    • A. Cohen and W. Hersh, "A survey of current work in biomedical text mining," Briefings Bioinformat., vol. 6, no. 1, pp. 57-71, 2005.
    • (2005) Briefings Bioinformat. , vol.6 , Issue.1 , pp. 57-71
    • Cohen, A.1    Hersh, W.2
  • 68
    • 34247201591 scopus 로고    scopus 로고
    • A comprehensive comparison study of document clustering for a biomedical digital library MEDLINE
    • DOI 10.1145/1141753.1141802, 6th ACM/IEEE-CS Joint Conference on Digital Libraries 2006: Opening Information Horizons, JCDL '06
    • I. Yoo and X. Hu, "A comprehensive comparison study of document clustering for a biomedical digital library MEDLINE," in Proc. 6th ACM/IEEE-CS Joint Int. Conf. Digital Libraries, 2006, pp. 220-229. (Pubitemid 46609261)
    • (2006) Proceedings of the ACM/IEEE Joint Conference on Digital Libraries , vol.2006 , pp. 220-229
    • Yoo, I.1    Hu, X.2
  • 69
    • 34548527699 scopus 로고    scopus 로고
    • A document clustering and ranking system for exploring MEDLINE citations
    • Y. Lin, W. Li, K. Chen, and Y. Liu, "A document clustering and ranking system for exploring MEDLINE citations," J. Amer. Medical Informatics Assoc, vol. 14, no. 5, pp. 651-661, 2007.
    • (2007) J. Amer. Medical Informatics Assoc , vol.14 , Issue.5 , pp. 651-661
    • Lin, Y.1    Li, W.2    Chen, K.3    Liu, Y.4
  • 70
    • 0035229819 scopus 로고    scopus 로고
    • TEXTQUEST: Document clustering of MEDLINE abstracts for concept discovery in molecular biology
    • I. Iliopoulos, A. Enright, and C. Ouzounis, "TEXTQUEST: Document clustering of MEDLINE abstracts for concept discovery in molecular biology," in Pacific Symp. Biocomputing, 2001, vol. 6, pp. 384-395.
    • (2001) Pacific Symp. Biocomputing , vol.6 , pp. 384-395
    • Iliopoulos, I.1    Enright, A.2    Ouzounis, C.3
  • 71
    • 0038017587 scopus 로고    scopus 로고
    • Mining microarray expression data by literature profiling
    • research0055.1-0055.16
    • D. Chaussabel and A. Sher, "Mining microarray expression data by literature profiling," Genome Biol., vol. 3, no. 10, 2002, research0055.1-0055.16.
    • (2002) Genome Biol. , vol.3 , Issue.10
    • Chaussabel, D.1    Sher, A.2
  • 72
    • 12744279636 scopus 로고    scopus 로고
    • Gene clustering by latent semantic indexing of MEDLINE abstracts
    • R. Homayouni, K. Heinrich, L. Wei, and M. Berry, "Gene clustering by latent semantic indexing of MEDLINE abstracts," Bioinformatics, vol. 21, no. 1, pp. 104-115, 2005.
    • (2005) Bioinformatics , vol.21 , Issue.1 , pp. 104-115
    • Homayouni, R.1    Heinrich, K.2    Wei, L.3    Berry, M.4
  • 73
    • 0015644825 scopus 로고
    • A fuzzy relative of the ISODATA process and its use in detecting compact well separated clusters
    • J. Dunn, "A fuzzy relative of the ISODATA process and its use in detecting compact well separated clusters," J. Cybern., vol. 3, no. 3, pp. 32-57, 1974.
    • (1974) J. Cybern. , vol.3 , Issue.3 , pp. 32-57
    • Dunn, J.1
  • 75
    • 0027595430 scopus 로고
    • A possibilistic approach to clustering
    • Feb.
    • R. Krishnapuram and J. Keller, "A possibilistic approach to clustering," IEEE Trans. Fuzzy Syst., vol. 1, no. 2, pp. 98-110, Feb. 1993.
    • (1993) IEEE Trans. Fuzzy Syst. , vol.1 , Issue.2 , pp. 98-110
    • Krishnapuram, R.1    Keller, J.2
  • 76
    • 0030765448 scopus 로고    scopus 로고
    • MIPS: A database for protein sequences, homology data and yeast genome information
    • H. Mewes, K. Albermann, K. Heumann, S. Liebl, and F. Pfeiffer, "MIPS: A database for protein sequences, homology data and yeast genome information," Nucleic Acid Res., vol. 25, pp. 28-30, 1997.
    • (1997) Nucleic Acid Res. , vol.25 , pp. 28-30
    • Mewes, H.1    Albermann, K.2    Heumann, K.3    Liebl, S.4    Pfeiffer, F.5
  • 77
    • 0037057374 scopus 로고    scopus 로고
    • Exploring the conditional coregulation of yeast gene expression through fuzzy k-means clustering
    • A. Gasch and M. Eisen, "Exploring the conditional coregulation of yeast gene expression through fuzzy k-means clustering," Genome Biol., vol. 3, no. 11, pp. 1-22, 2002.
    • (2002) Genome Biol. , vol.3 , Issue.11 , pp. 1-22
    • Gasch, A.1    Eisen, M.2
  • 78
    • 17944394324 scopus 로고    scopus 로고
    • Fuzzy c-means method for clustering microarray data
    • D. Dembélé and P. Kastner, "Fuzzy c-means method for clustering microarray data," Bioinformatics, vol. 19, no. 8, pp. 973-980, 2003.
    • (2003) Bioinformatics , vol.19 , Issue.8 , pp. 973-980
    • Dembélé, D.1    Kastner, P.2
  • 79
    • 67649403094 scopus 로고    scopus 로고
    • Towards improving fuzzy clustering using support vector machine: Application to gene expression data
    • A. Mukhopadhyay and U. Maulik, "Towards improving fuzzy clustering using support vector machine: Application to gene expression data," Pattern Recognition, vol. 42, pp. 2744-2763, 2009.
    • (2009) Pattern Recognition , vol.42 , pp. 2744-2763
    • Mukhopadhyay, A.1    Maulik, U.2
  • 85
    • 33750304825 scopus 로고    scopus 로고
    • A genetic k-medoids clustering algorithm
    • W. Sheng and X. Liu, "A genetic k-medoids clustering algorithm," J. Heuristics, vol. 12, no. 6, pp. 447-466, 2006.
    • (2006) J. Heuristics , vol.12 , Issue.6 , pp. 447-466
    • Sheng, W.1    Liu, X.2
  • 87
    • 0033715579 scopus 로고    scopus 로고
    • Genetic algorithm-based clustering technique
    • U. Maulik and S. Bandyopadhyay, "Genetic algorithm-based clustering technique," Pattern Recognition, vol. 33, pp. 1455-1465, 2000.
    • (2000) Pattern Recognition , vol.33 , pp. 1455-1465
    • Maulik, U.1    Bandyopadhyay, S.2
  • 89
    • 34548847750 scopus 로고    scopus 로고
    • Combinatorial particle swarm optimization (CPSO) for partitional clustering problem
    • B. Jarboui, M. Cheikh, P. Siarry, and A. Rebai, "Combinatorial particle swarm optimization (CPSO) for partitional clustering problem," Appl. Math. Computation, vol. 192, pp. 337-345, 2007.
    • (2007) Appl. Math. Computation , vol.192 , pp. 337-345
    • Jarboui, B.1    Cheikh, M.2    Siarry, P.3    Rebai, A.4
  • 91
    • 2942695509 scopus 로고    scopus 로고
    • A genetic algorithm for cluster analysis
    • E. Hruschka and N. Ebecken, "A genetic algorithm for cluster analysis," Intell. Data Anal., vol. 7, pp. 15-25, 2003.
    • (2003) Intell. Data Anal. , vol.7 , pp. 15-25
    • Hruschka, E.1    Ebecken, N.2
  • 92
    • 31944437793 scopus 로고    scopus 로고
    • Dynamic clustering using particle swarm optimization with application in image segmentation
    • M. Omran, A. Salman, and A. Engelbrecht, "Dynamic clustering using particle swarm optimization with application in image segmentation," Pattern Anal. Applic, vol. 8, no. 4, pp. 332-344, 2006.
    • (2006) Pattern Anal. Applic , vol.8 , Issue.4 , pp. 332-344
    • Omran, M.1    Salman, A.2    Engelbrecht, A.3
  • 93
    • 38749142896 scopus 로고    scopus 로고
    • Automatic kernel clustering with a multi-elitist particle swarm optimization algorithm
    • S. Das, A. Abraham, and A. Konar, "Automatic kernel clustering with a multi-elitist particle swarm optimization algorithm," Pattern Recognition Lett., vol. 29, pp. 688-699, 2008.
    • (2008) Pattern Recognition Lett. , vol.29 , pp. 688-699
    • Das, S.1    Abraham, A.2    Konar, A.3
  • 94
    • 33744745603 scopus 로고    scopus 로고
    • An evolutionary clustering algorithm for gene expression microarray data analysis
    • DOI 10.1109/TEVC.2005.859371
    • C. Ma, C. Chan, X. Yao, and K. Chiu, "An evolutionary clustering algorithm for gene expression microarray data analysis," IEEE Trans. Evolutionary Computation, vol. 10, no. 3, pp. 296-314, 2006. (Pubitemid 43821760)
    • (2006) IEEE Transactions on Evolutionary Computation , vol.10 , Issue.3 , pp. 296-314
    • Ma, P.C.H.1    Chan, K.C.C.2    Yao, X.3    Chiu, D.K.Y.4
  • 95
    • 45549106865 scopus 로고    scopus 로고
    • PK-means: A new algorithm for gene clustering
    • Z. Du, Y. Wang, and Z. Ji, "PK-means: A new algorithm for gene clustering," Computational Biol. Chemistry, vol. 32, pp. 243-247, 2008.
    • (2008) Computational Biol. Chemistry , vol.32 , pp. 243-247
    • Du, Z.1    Wang, Y.2    Ji, Z.3
  • 96
    • 69949189660 scopus 로고    scopus 로고
    • Exploring ant-based algorithms for gene expression data analysis
    • Y. He and S. Hui, "Exploring ant-based algorithms for gene expression data analysis," Artificial Intell. Medicine, vol. 47, pp. 105-119, 2009.
    • (2009) Artificial Intell. Medicine , vol.47 , pp. 105-119
    • He, Y.1    Hui, S.2
  • 97
    • 69249221444 scopus 로고    scopus 로고
    • A niching genetic k-means algorithm and its applications to gene expression data
    • W. Sheng, A. Tucker, and X. Liu, "A niching genetic k-means algorithm and its applications to gene expression data," Soft Comput., vol. 14, pp. 9-19, 2010.
    • (2010) Soft Comput. , vol.14 , pp. 9-19
    • Sheng, W.1    Tucker, A.2    Liu, X.3
  • 98
  • 100
    • 0015749493 scopus 로고
    • Self-organization of orientation sensitive cells in the striate cortex
    • C. von der Malsburg, "Self-organization of orientation sensitive cells in the striate cortex," Kybernetik, vol. 14, pp. 85-100, 1973.
    • (1973) Kybernetik , vol.14 , pp. 85-100
    • Von Der Malsburg, C.1
  • 101
    • 0016758101 scopus 로고
    • Cognitron: A self-organizing multi-layered neural network
    • K. Fukushima, "Cognitron: A self-organizing multi-layered neural network," Biological Cybern., vol. 20, pp. 121-136, 1975.
    • (1975) Biological Cybern. , vol.20 , pp. 121-136
    • Fukushima, K.1
  • 102
    • 0017120827 scopus 로고
    • Adaptive pattern classification and universal recoding: I. Parallel development and coding of neural feature detectors
    • S. Grossberg, "Adaptive pattern classification and universal recoding: I. Parallel development and coding of neural feature detectors," Biological Cybern., vol. 23, pp. 121-134, 1976.
    • (1976) Biological Cybern. , vol.23 , pp. 121-134
    • Grossberg, S.1
  • 103
    • 0017083148 scopus 로고
    • Adaptive pattern recognition and universal encoding II: Feedback, expectation, olfaction, and illusions
    • S. Grossberg, "Adaptive pattern recognition and universal encoding II: Feedback, expectation, olfaction, and illusions," Biological Cybern., vol. 23, pp. 187-202, 1976.
    • (1976) Biological Cybern. , vol.23 , pp. 187-202
    • Grossberg, S.1
  • 104
    • 0002656190 scopus 로고
    • Feature discovery by competitive learning
    • D. Rumelhart and D. Zipser, "Feature discovery by competitive learning," Cognitive Sci., vol. 9, pp. 75-112, 1985.
    • (1985) Cognitive Sci. , vol.9 , pp. 75-112
    • Rumelhart, D.1    Zipser, D.2
  • 105
    • 0033281101 scopus 로고    scopus 로고
    • A survey of fuzzy clustering algorithms for pattern recognition - Parts I and II
    • Jun.
    • A. Baraldi and P. Blonda, "A survey of fuzzy clustering algorithms for pattern recognition - Parts I and II," IEEE Trans. Syst., Man, Cybern. - Part B: Cybern., vol. 29, no. 6, pp. 778-801, Jun. 1999.
    • (1999) IEEE Trans. Syst., Man, Cybern. - Part B: Cybern. , vol.29 , Issue.6 , pp. 778-801
    • Baraldi, A.1    Blonda, P.2
  • 108
    • 0021776661 scopus 로고
    • A massively parallel architecture for a self-organizing neural pattern recognition machine
    • G. Carpenter and S. Grossberg, "A massively parallel architecture for a self-organizing neural pattern recognition machine," Computer Vision, Graphics, Image Process., vol. 37, pp. 54-115, 1987.
    • (1987) Computer Vision, Graphics, Image Process. , vol.37 , pp. 54-115
    • Carpenter, G.1    Grossberg, S.2
  • 109
    • 0018861680 scopus 로고
    • How does the brain build a cognitive code?
    • S. Grossberg, "How does the brain build a cognitive code?," Psychological Rev., vol. 87, pp. 1-51, 1980.
    • (1980) Psychological Rev. , vol.87 , pp. 1-51
    • Grossberg, S.1
  • 110
    • 84973857317 scopus 로고
    • ART2: Self-organization of stable category recognition codes for analog input patterns
    • G. Carpenter and S. Grossberg, "ART2: Self-organization of stable category recognition codes for analog input patterns," Appl. Opt., vol. 26, no. 23, pp. 4919-4930, 1987.
    • (1987) Appl. Opt. , vol.26 , Issue.23 , pp. 4919-4930
    • Carpenter, G.1    Grossberg, S.2
  • 111
    • 0026408256 scopus 로고
    • Fuzzy ART: Fast stable learning and categorization of analog patterns by an adaptive resonance system
    • G. Carpenter, S. Grossberg, and D. Rosen, "Fuzzy ART: Fast stable learning and categorization of analog patterns by an adaptive resonance system," Neural Networks, vol. 4, pp. 759-771, 1991.
    • (1991) Neural Networks , vol.4 , pp. 759-771
    • Carpenter, G.1    Grossberg, S.2    Rosen, D.3
  • 112
    • 0030198885 scopus 로고    scopus 로고
    • Gaussian ARTMAP: A neural network for fast incremental learning of noisy multidimensional maps
    • J. Williamson, "Gaussian ARTMAP: A neural network for fast incremental learning of noisy multidimensional maps," Neural Networks, vol. 9, no. 5, pp. 881-897, 1996.
    • (1996) Neural Networks , vol.9 , Issue.5 , pp. 881-897
    • Williamson, J.1
  • 113
    • 36348986777 scopus 로고    scopus 로고
    • The Bayesian ARTMAP
    • Dec.
    • B. Vigdor and B. Lerner, "The Bayesian ARTMAP," IEEE Trans. Neural Networks, vol. 18, no. 6, pp. 1628-1644, Dec. 2007.
    • (2007) IEEE Trans. Neural Networks , vol.18 , Issue.6 , pp. 1628-1644
    • Vigdor, B.1    Lerner, B.2
  • 115
    • 0025889915 scopus 로고
    • ARTMAP: Supervised real-time learning and classification of nonstationary data by a self-organizing neural network
    • G. Carpenter, S. Grossberg, and J. Reynolds, "ARTMAP: Supervised real-time learning and classification of nonstationary data by a self-organizing neural network," Neural Networks, vol. 4, no. 5, pp. 169-181, 1991.
    • (1991) Neural Networks , vol.4 , Issue.5 , pp. 169-181
    • Carpenter, G.1    Grossberg, S.2    Reynolds, J.3
  • 116
    • 67349104210 scopus 로고    scopus 로고
    • Coordinated machine learning and decision support for situation awareness
    • N. Brannon, J. Seiffertt, T. Draelos, and D. Wusnch, II, "Coordinated machine learning and decision support for situation awareness," Neural Networks, vol. 22, pp. 316-325, 2009.
    • (2009) Neural Networks , vol.22 , pp. 316-325
    • Brannon, N.1    Seiffertt, J.2    Draelos, T.3    Wusnch II, D.4
  • 117
    • 0027629412 scopus 로고
    • Rival penalized competitive learning for clustering analysis, RBF net, and curve detection
    • Aug.
    • L. Xu, A. Krzyzak, and E. Oja, "Rival penalized competitive learning for clustering analysis, RBF net, and curve detection," IEEE Trans. Neural Networks, vol. 4, no. 4, pp. 636-649, Aug. 1993.
    • (1993) IEEE Trans. Neural Networks , vol.4 , Issue.4 , pp. 636-649
    • Xu, L.1    Krzyzak, A.2    Oja, E.3
  • 119
    • 0027634778 scopus 로고
    • Generalized clustering networks and kohonen's self-organizing scheme
    • Aug.
    • N. Pal, J. Bezdek, and E. Tsao, "Generalized clustering networks and Kohonen's self-organizing scheme," IEEE Trans. Neural Networks, vol. 4, no. 4, pp. 549-557, Aug. 1993.
    • (1993) IEEE Trans. Neural Networks , vol.4 , Issue.4 , pp. 549-557
    • Pal, N.1    Bezdek, J.2    Tsao, E.3
  • 120
    • 0028423359 scopus 로고
    • Fuzzy kohonen clustering network
    • E. Tsao, J. Bezdek, and N. Pal, "Fuzzy Kohonen clustering network," Pattern Recognition, vol. 27, no. 5, pp. 757-764, 1994.
    • (1994) Pattern Recognition , vol.27 , Issue.5 , pp. 757-764
    • Tsao, E.1    Bezdek, J.2    Pal, N.3
  • 121
  • 122
    • 0030241976 scopus 로고    scopus 로고
    • Fuzzy algorithms for learning vector quantization
    • Oct.
    • N. Karayiannis and P. Pai, "Fuzzy algorithms for learning vector quantization," IEEE Trans. Neural Networks, vol. 7, no. 5, pp. 1196-1211, Oct. 1996.
    • (1996) IEEE Trans. Neural Networks , vol.7 , Issue.5 , pp. 1196-1211
    • Karayiannis, N.1    Pai, P.2
  • 123
    • 0031274467 scopus 로고    scopus 로고
    • An integrated approach to fuzzy learning vector quantization and fuzzy c-means clustering
    • PII S1063670697048364
    • N. Karayiannis and J. Bezdek, "An integrated approach to fuzzy learning vector quantization and fuzzy c-means clustering," IEEE Trans. Fuzzy Syst., vol. 5, no. 4, pp. 622-628, Apr. 1997. (Pubitemid 127768540)
    • (1997) IEEE Transactions on Fuzzy Systems , vol.5 , Issue.4 , pp. 622-628
    • Karayiannis, N.B.1    Bezdek, J.C.2
  • 124
    • 0034187784 scopus 로고    scopus 로고
    • Clustering of the self-organizing map
    • Jun.
    • J. Vesanto and E. Alhoniemi, "Clustering of the self-organizing map," IEEE Trans. Neural Networks, vol. 11, no. 3, pp. 586-600, Jun. 2000.
    • (2000) IEEE Trans. Neural Networks , vol.11 , Issue.3 , pp. 586-600
    • Vesanto, J.1    Alhoniemi, E.2
  • 125
    • 0027275316 scopus 로고
    • Review of MR image segmentation techniques using pattern recognition
    • J. Bezdek, L. Hall, and L. Clarke, "Review of MR image segmentation techniques using pattern recognition," Med. Phys., vol. 20, no. 4, pp. 1033-1048, 1993.
    • (1993) Med. Phys. , vol.20 , Issue.4 , pp. 1033-1048
    • Bezdek, J.1    Hall, L.2    Clarke, L.3
  • 126
    • 0034575445 scopus 로고    scopus 로고
    • Current methods in medical image segmentation
    • L. Pham, C. Xu, and J. Prince, "Current methods in medical image segmentation," Annu. Rev. Biomed. Eng., vol. 2, pp. 315-337, 2000.
    • (2000) Annu. Rev. Biomed. Eng. , vol.2 , pp. 315-337
    • Pham, L.1    Xu, C.2    Prince, J.3
  • 127
    • 0031140630 scopus 로고    scopus 로고
    • A methodology for constructing fuzzy algorithms for learning vector quantization
    • PII S1045922797004669
    • N. Karayiannis, "A methodology for construction fuzzy algorithms for learning vector quantization," IEEE Trans. Neural Networks, vol. 8, no. 3, pp. 505-518, Jun. 1997. (Pubitemid 127767796)
    • (1997) IEEE Transactions on Neural Networks , vol.8 , Issue.3 , pp. 505-518
    • Karayiannis, N.B.1
  • 128
    • 0032587462 scopus 로고    scopus 로고
    • Segmentation of magnetic resonance images using fuzzy algorithms for learning vector quantization
    • Feb.
    • N. Karayiannis and P. Pai, "Segmentation of magnetic resonance images using fuzzy algorithms for learning vector quantization," IEEE Trans. Med. Imaging, vol. 18, no. 2, pp. 172-180, Feb. 1999.
    • (1999) IEEE Trans. Med. Imaging , vol.18 , Issue.2 , pp. 172-180
    • Karayiannis, N.1    Pai, P.2
  • 129
    • 0034270080 scopus 로고    scopus 로고
    • Soft learning vector quantization and clustering algorithms based on ordered weighted aggregation operators
    • Oct.
    • N. Karayiannis, "Soft learning vector quantization and clustering algorithms based on ordered weighted aggregation operators," IEEE Trans. Neural Networks, vol. 11, no. 5, pp. 1093-1105, Oct. 2000.
    • (2000) IEEE Trans. Neural Networks , vol.11 , Issue.5 , pp. 1093-1105
    • Karayiannis, N.1
  • 130
    • 84899025015 scopus 로고
    • Vector quantization by deterministic annealing
    • Apr.
    • K. Rose, E. Gurewitz, and G. Fox, "Vector quantization by deterministic annealing," IEEE Trans. Inform. Theory, vol. 38, no. 4, pp. 1249-1257, Apr. 1992.
    • (1992) IEEE Trans. Inform. Theory , vol.38 , Issue.4 , pp. 1249-1257
    • Rose, K.1    Gurewitz, E.2    Fox, G.3
  • 131
    • 31644442652 scopus 로고    scopus 로고
    • Cluster analysis of dynamic cerebal contrast-enhanced perfusion MRI time-series
    • Jan.
    • A. Wismüller, A. Meyer-Baese, O. Lange, M. Reiser, and G. Leinsinger, "Cluster analysis of dynamic cerebal contrast-enhanced perfusion MRI time-series," IEEE Trans. Med. Imaging, vol. 25, no. 1, pp. 62-73, Jan. 2006.
    • (2006) IEEE Trans. Med. Imaging , vol.25 , Issue.1 , pp. 62-73
    • Wismüller, A.1    Meyer-Baese, A.2    Lange, O.3    Reiser, M.4    Leinsinger, G.5
  • 132
    • 0027632248 scopus 로고
    • "Neural-gas" network for vector quantization and its application to time-series prediction
    • Aug.
    • T. Martinetz, S. Berkovich, and K. Schulten, ""Neural-Gas" network for vector quantization and its application to time-series prediction," IEEE Trans. Neural Networks, vol. 4, no. 4, pp. 558-569, Aug. 1993.
    • (1993) IEEE Trans. Neural Networks , vol.4 , Issue.4 , pp. 558-569
    • Martinetz, T.1    Berkovich, S.2    Schulten, K.3
  • 133
  • 134
    • 33846318193 scopus 로고    scopus 로고
    • A comparison between neural and fuzzy cluster analysis techniques for functional MRI
    • O. Lange, A. Meyer-Baese, M. Hurdal, and S. Foo, "A comparison between neural and fuzzy cluster analysis techniques for functional MRI," Biomed. Signal Process. Control, vol. 1, pp. 243-252, 2006.
    • (2006) Biomed. Signal Process. Control , vol.1 , pp. 243-252
    • Lange, O.1    Meyer-Baese, A.2    Hurdal, M.3    Foo, S.4
  • 135
    • 0033027794 scopus 로고    scopus 로고
    • Interpreting patterns of gene expression with self-organizing maps: Methods and application to hematopoietic differentiation
    • P. Tamayo, D. Slonim, J. Mesirov, Q. Zhu, S. Kitareewan, E. Dmitrovsky, E. Lander, and T. Golub, "Interpreting patterns of gene expression with self-organizing maps: Methods and application to Hematopoietic differentiation," Proc. Nat. Acad. Sci. USA, vol. 96, pp. 2907-2912, 1999.
    • (1999) Proc. Nat. Acad. Sci. USA , vol.96 , pp. 2907-2912
    • Tamayo, P.1    Slonim, D.2    Mesirov, J.3    Zhu, Q.4    Kitareewan, S.5    Dmitrovsky, E.6    Lander, E.7    Golub, T.8
  • 137
    • 35348822688 scopus 로고    scopus 로고
    • Improving cluster visualization in self-organizing maps: Application in gene expression data analysis
    • E. Fernandez and M. Balzarini, "Improving cluster visualization in self-organizing maps: Application in gene expression data analysis," Computers Biol. Medicine, vol. 37, pp. 1677-1689, 2007.
    • (2007) Computers Biol. Medicine , vol.37 , pp. 1677-1689
    • Fernandez, E.1    Balzarini, M.2
  • 138
    • 77951625681 scopus 로고    scopus 로고
    • Clustering of high-dimensional gene expression data with feature filtering methods and diffusion maps
    • R. Xu, S. Damelin, B. Nadler, and D. Wunsch, II, "Clustering of high-dimensional gene expression data with feature filtering methods and diffusion maps," Artificial Intell. Medicine, vol. 48, pp. 91-98, 2010.
    • (2010) Artificial Intell. Medicine , vol.48 , pp. 91-98
    • Xu, R.1    Damelin, S.2    Nadler, B.3    Wunsch II, D.4
  • 139
    • 0036678783 scopus 로고    scopus 로고
    • Analysis of expression profile using fuzzy adaptive resonance theory
    • S. Tomida, T. Hanai, H. Honda, and T. Kobayashi, "Analysis of expression profile using fuzzy adaptive resonance theory," Bioinformatics, vol. 18, no. 8, pp. 1073-1083, 2002.
    • (2002) Bioinformatics , vol.18 , Issue.8 , pp. 1073-1083
    • Tomida, S.1    Hanai, T.2    Honda, H.3    Kobayashi, T.4
  • 140
    • 0036075621 scopus 로고    scopus 로고
    • Tissue classification through analysis of gene expression data using a new family of ART architectures
    • R. Xu, G. Anagnostopoulos, and D. Wunsch, II, "Tissue classification through analysis of gene expression data using a new family of ART architectures," in Proc. Int. Joint Conf. Neural Networks, 2002, vol. 1, pp. 300-304.
    • (2002) Proc. Int. Joint Conf. Neural Networks , vol.1 , pp. 300-304
    • Xu, R.1    Anagnostopoulos, G.2    Wunsch II, D.3
  • 144
    • 34249010475 scopus 로고    scopus 로고
    • Ellipsoidal support vector clustering for functional MRI analysis
    • D. Wang, L. Shi, D. Yeung, E. Tsang, and P. Heng, "Ellipsoidal support vector clustering for functional MRI analysis," Pattern Recognition, vol. 40, pp. 2685-2695, 2007.
    • (2007) Pattern Recognition , vol.40 , pp. 2685-2695
    • Wang, D.1    Shi, L.2    Yeung, D.3    Tsang, E.4    Heng, P.5
  • 145
    • 67650166758 scopus 로고    scopus 로고
    • On the improvement of support vector techniques for clustering by means of whitening transform
    • S. Zafeiriou and N. Laskaris, "On the improvement of support vector techniques for clustering by means of whitening transform," IEEE Signal Process. Lett., vol. 15, pp. 198-201, 2008.
    • (2008) IEEE Signal Process. Lett. , vol.15 , pp. 198-201
    • Zafeiriou, S.1    Laskaris, N.2
  • 148
    • 0041877699 scopus 로고    scopus 로고
    • A new kernel-based fuzzy clustering approach: Support vector clustering with cell growing
    • J. Chiang and P. Hao, "A new kernel-based fuzzy clustering approach: Support vector clustering with cell growing," IEEE Trans. Fuzzy Syst., vol. 11, no. 4, pp. 518-527, 2003.
    • (2003) IEEE Trans. Fuzzy Syst. , vol.11 , Issue.4 , pp. 518-527
    • Chiang, J.1    Hao, P.2
  • 150
  • 151
    • 0036565280 scopus 로고    scopus 로고
    • Mercer kernel based clustering in feature space
    • Aug.
    • M. Girolami, "Mercer kernel based clustering in feature space," IEEE Trans. Neural Networks, vol. 13, no. 4, pp. 780-784, Aug. 2002.
    • (2002) IEEE Trans. Neural Networks , vol.13 , Issue.4 , pp. 780-784
    • Girolami, M.1
  • 152
    • 0347243182 scopus 로고    scopus 로고
    • Nonlinear component analysis as a kernel eigenvalue problem
    • B. Schölkopf, A. Smola, and K. Müller, "Nonlinear component analysis as a kernel eigenvalue problem," Neural Comput., vol. 10, no. 5, pp. 1299-1319, 1998.
    • (1998) Neural Comput. , vol.10 , Issue.5 , pp. 1299-1319
    • Schölkopf, B.1    Smola, A.2    Müller, K.3
  • 153
    • 33846338472 scopus 로고    scopus 로고
    • Some equivalences between kernel methods and information theoretic methods
    • R. Jenssen, T. Eltoft, D. Erdogmus, and J. Principe, "Some equivalences between kernel methods and information theoretic methods," J. VLSI Signal Process., vol. 45, pp. 49-65, 2006.
    • (2006) J. VLSI Signal Process , vol.45 , pp. 49-65
    • Jenssen, R.1    Eltoft, T.2    Erdogmus, D.3    Principe, J.4
  • 155
    • 33750527085 scopus 로고    scopus 로고
    • Information cut for clustering using a gradient descent approach
    • R. Jenssen, D. Erdogmus, K. Hild, J. Principe, and T. Eltoft, "Information cut for clustering using a gradient descent approach," Pattern Recognition, vol. 40, pp. 796-806, 2007.
    • (2007) Pattern Recognition , vol.40 , pp. 796-806
    • Jenssen, R.1    Erdogmus, D.2    Hild, K.3    Principe, J.4    Eltoft, T.5
  • 157
    • 33750162226 scopus 로고    scopus 로고
    • Kernel-based deterministic annealing algorithm for data clustering
    • X. Yang, Q. Song, and W. Zhang, "Kernel-based deterministic annealing algorithm for data clustering," IEE Proc. - Vision, Image Signal Process, vol. 153, no. 5, pp. 557-568, 2006.
    • (2006) IEE Proc. - Vision, Image Signal Process , vol.153 , Issue.5 , pp. 557-568
    • Yang, X.1    Song, Q.2    Zhang, W.3
  • 158
    • 33750195300 scopus 로고    scopus 로고
    • An unsupervised kernel based fuzzy c-means clustering algorithm with kernel normalization
    • S. Zhou and Q. Gan, "An unsupervised kernel based fuzzy c-means clustering algorithm with kernel normalization," Int. J. Computational Intell. Applic, vol. 4, no. 4, pp. 355-373, 2004.
    • (2004) Int. J. Computational Intell. Applic , vol.4 , Issue.4 , pp. 355-373
    • Zhou, S.1    Gan, Q.2
  • 159
    • 4444347719 scopus 로고    scopus 로고
    • A novel kernelized fuzzy C-means algorithm with application in medical image segmentation
    • D. Zhang and S. Chen, "A novel kernelized fuzzy C-means algorithm with application in medical image segmentation," Artificial Intell. Medicine, vol. 32, pp. 37-50, 2004.
    • (2004) Artificial Intell. Medicine , vol.32 , pp. 37-50
    • Zhang, D.1    Chen, S.2
  • 160
    • 46849104101 scopus 로고    scopus 로고
    • Kernelized fuzzy attribute C-means clustering algorithm
    • J. Liu and M. Xu, "Kernelized fuzzy attribute C-means clustering algorithm," Fuzzy Sets and Systems, vol. 159, pp. 2428-2445, 2008.
    • (2008) Fuzzy Sets and Systems , vol.159 , pp. 2428-2445
    • Liu, J.1    Xu, M.2
  • 161
    • 2342599235 scopus 로고    scopus 로고
    • Kernel-kohonen networks
    • P. András, "Kernel-Kohonen networks," Int. J. Neural Syst., vol. 12, no. 2, pp. 117-135, 2002.
    • (2002) Int. J. Neural Syst. , vol.12 , Issue.2 , pp. 117-135
    • András, P.1
  • 162
    • 40849145323 scopus 로고    scopus 로고
    • Batch kernel SOM and related laplacian methods for social network analysis
    • R. Boulet, B. Jouve, F. Rossi, and N. Villa, "Batch kernel SOM and related Laplacian methods for social network analysis," Neurocomputing, vol. 71, pp. 1257-1273, 2008.
    • (2008) Neurocomputing , vol.71 , pp. 1257-1273
    • Boulet, R.1    Jouve, B.2    Rossi, F.3    Villa, N.4
  • 165
    • 33845458608 scopus 로고    scopus 로고
    • Systematic tuning of parameters in support vector clustering
    • Ö. Yilmaz, L. Achenie, and R. Srivastava, "Systematic tuning of parameters in support vector clustering," Math. Biosci., vol. 205, pp. 252-270, 2007.
    • (2007) Math. Biosci. , vol.205 , pp. 252-270
    • Yilmaz, Ö.1    Achenie, L.2    Srivastava, R.3
  • 166
    • 17644400681 scopus 로고    scopus 로고
    • Clustering gene expression data with kernel principal components
    • DOI 10.1142/S0219720005001168, PII S0219720005001168
    • Z. Liu, D. Chen, H. Bensmail, and Y. Xu, "Clustering gene expression data with kernel principal components," J. Bioinformat. Computational Biol, vol. 3, no. 2, pp. 303-316, 2005. (Pubitemid 40561389)
    • (2005) Journal of Bioinformatics and Computational Biology , vol.3 , Issue.2 , pp. 303-316
    • Liu, Z.1    Chen, D.2    Bensmail, H.3    Xu, Y.4
  • 167
    • 4444353693 scopus 로고    scopus 로고
    • Kernel-based self-organized maps trained with supervised bias for gene expression data analysis
    • S. Papadimitrioou and S. Likothanassis, "Kernel-based self-organized maps trained with supervised bias for gene expression data analysis," J. Bioinformat. Computational Biol., vol. 1, no. 4, pp. 647-680, 2005.
    • (2005) J. Bioinformat. Computational Biol. , vol.1 , Issue.4 , pp. 647-680
    • Papadimitrioou, S.1    Likothanassis, S.2
  • 168
    • 0242475337 scopus 로고    scopus 로고
    • Kernel hierarchical gene clustering from microarray expression data
    • J. Qin, D. Lewis, and W. Noble, "Kernel hierarchical gene clustering from microarray expression data," Bioinformatics, vol. 19, no. 16, pp. 2097-2104, 2003.
    • (2003) Bioinformatics , vol.19 , Issue.16 , pp. 2097-2104
    • Qin, J.1    Lewis, D.2    Noble, W.3
  • 169
    • 3543098627 scopus 로고    scopus 로고
    • Robust image segmentation using FCM with spatial constraints based on new kernel-induced distance measure
    • S. Chen and D. Zhang, "Robust image segmentation using FCM with spatial constraints based on new kernel-induced distance measure," IEEE Trans. Systems, Man, Cybern. - Part B: Cybern., vol. 34, no. 4, pp. 1907-1916, 2004.
    • (2004) IEEE Trans. Systems, Man, Cybern. - Part B: Cybern. , vol.34 , Issue.4 , pp. 1907-1916
    • Chen, S.1    Zhang, D.2
  • 170
    • 0346801873 scopus 로고    scopus 로고
    • The gene ontology (GO) database and informatics resource
    • The Gene Ontology Consortium
    • The Gene Ontology Consortium, "The gene ontology (GO) database and informatics resource," Nucleic Acids Res., vol.32, pp. D258-D261, 2004.
    • (2004) Nucleic Acids Res. , vol.32
  • 172
    • 0141613770 scopus 로고    scopus 로고
    • Efficient biased sampling for approximate clustering and outlier detection in large data sets
    • May
    • G. Kollios, D. Gunopulos, N. Koudas, and S. Berchtold, "Efficient biased sampling for approximate clustering and outlier detection in large data sets," IEEE Trans. Knowledge Data Eng., vol. 13, no. 5, pp. 1170-1187, May 2003.
    • (2003) IEEE Trans. Knowledge Data Eng. , vol.13 , Issue.5 , pp. 1170-1187
    • Kollios, G.1    Gunopulos, D.2    Koudas, N.3    Berchtold, S.4
  • 174
    • 0036709106 scopus 로고    scopus 로고
    • CLARANS: A method for clustering objects for spatial data mining
    • R. Ng and J. Han, "CLARANS: A method for clustering objects for spatial data mining," IEEE Trans. Knowledge Data Eng., vol. 14, no. 5, pp. 1003-1016, 2002.
    • (2002) IEEE Trans. Knowledge Data Eng. , vol.14 , Issue.5 , pp. 1003-1016
    • Ng, R.1    Han, J.2
  • 178
    • 28044431838 scopus 로고    scopus 로고
    • Scalable model-based clustering for large databases based on data summarization
    • H. Jin, M. Wong, and K. Leung, "Scalable model-based clustering for large databases based on data summarization," IEEE Trans. Pattern Anal. Machine Intell., vol. 27, no. 11, pp. 1710-1719, 2005.
    • (2005) IEEE Trans. Pattern Anal. Machine Intell. , vol.27 , Issue.11 , pp. 1710-1719
    • Jin, H.1    Wong, M.2    Leung, K.3
  • 180
    • 0002679222 scopus 로고    scopus 로고
    • Scalability for clustering algorithms revisited
    • F. Farnstrom, J. Lewis, and C. Elkan, "Scalability for clustering algorithms revisited," SIGKDD Explorations, vol. 2, no. 1, pp. 51-57, 2000.
    • (2000) SIGKDD Explorations , vol.2 , Issue.1 , pp. 51-57
    • Farnstrom, F.1    Lewis, J.2    Elkan, C.3
  • 182
    • 0038355077 scopus 로고    scopus 로고
    • Million city traveling salesman problem solution by divide and conquer clustering with adaptive resonance neural networks
    • S. Mulder and D. Wunsch, II, "Million city traveling salesman problem solution by divide and conquer clustering with adaptive resonance neural networks," Neural Networks, vol. 116, pp. 827-832, 2003.
    • (2003) Neural Networks , vol.116 , pp. 827-832
    • Mulder, S.1    Wunsch II, D.2
  • 183
    • 1942535719 scopus 로고    scopus 로고
    • Evolutionary algorithms, Markov decision processes, adaptive critic designs, and clustering: Commonalities, hybridization, and performance
    • D. Wunsch, II and S. Mulder, "Evolutionary algorithms, Markov decision processes, adaptive critic designs, and clustering: Commonalities, hybridization, and performance," in Proc. IEEE Int. Conf. Intelligent Sensing Inform. Process., 2004.
    • (2004) Proc. IEEE Int. Conf. Intelligent Sensing Inform. Process
    • Wunsch II, D.1    Mulder, S.2
  • 186
    • 0031701179 scopus 로고    scopus 로고
    • A distribution-based clustering algorithm for mining in large spatial databases
    • Orlando, FL
    • X. Xu, M. Ester, H. Kriegel, and J. Sander, "A distribution-based clustering algorithm for mining in large spatial databases," in Proc. 14th Int. Conf. Data Eng., Orlando, FL, 1998, pp. 324-331.
    • (1998) Proc. 14th Int. Conf. Data Eng. , pp. 324-331
    • Xu, X.1    Ester, M.2    Kriegel, H.3    Sander, J.4
  • 188
    • 84994158589 scopus 로고    scopus 로고
    • STING: A statistical information grid approach to spatial data mining
    • W. Wang, J. Yang, and R. Muntz, "STING: A statistical information grid approach to spatial data mining," in Proc. 23rd Int. Conf. Very Large Data Bases, 1997, pp. 186-195.
    • (1997) Proc. 23rd Int. Conf. Very Large Data Bases , pp. 186-195
    • Wang, W.1    Yang, J.2    Muntz, R.3
  • 189
    • 0003052357 scopus 로고    scopus 로고
    • WaveCluster: A multi-resolution clustering approach for very large spatial databases
    • G. Sheikholeslami, S. Chatterjee, and A. Zhang, "WaveCluster: A multi-resolution clustering approach for very large spatial databases," in Proc. 24th VLDB Conf., 1998, pp. 428-439.
    • (1998) Proc. 24th VLDB Conf. , pp. 428-439
    • Sheikholeslami, G.1    Chatterjee, S.2    Zhang, A.3
  • 191
    • 84891662649 scopus 로고    scopus 로고
    • An efficient clustering method for fast rendering of time-varying volumetric medical data
    • Z. Wang, B. Nguyen, C. Chui, J. Qin, C. Ang, and S. Ong, "An efficient clustering method for fast rendering of time-varying volumetric medical data," Visual Comput., vol. 26, no. 6-8, pp. 1061-1070, 2010.
    • (2010) Visual Comput. , vol.26 , Issue.6-8 , pp. 1061-1070
    • Wang, Z.1    Nguyen, B.2    Chui, C.3    Qin, J.4    Ang, C.5    Ong, S.6
  • 192
    • 84942597099 scopus 로고    scopus 로고
    • DHC: A density-based hierarchical clustering method for time series gene expression data
    • D. Jiang, J. Pei, and A. Zhang, "DHC: A density-based hierarchical clustering method for time series gene expression data," in Proc. Third IEEE Symp. Bioinformatics BioEng., 2003, pp. 1-8.
    • (2003) Proc. Third IEEE Symp. Bioinformatics BioEng. , pp. 1-8
    • Jiang, D.1    Pei, J.2    Zhang, A.3
  • 194
    • 37549035869 scopus 로고    scopus 로고
    • Automated segmentation in confocal images using a density clustering method
    • Article Number 043003
    • P. Chan, S. Cheng, and T. Poon, "Automated segmentation in confocal images using a density clustering method," J. Electron. Imaging, vol. 16, no. 4, 2007, Article Number 043003.
    • (2007) J. Electron. Imaging , vol.16 , Issue.4
    • Chan, P.1    Cheng, S.2    Poon, T.3
  • 198
    • 0142025120 scopus 로고    scopus 로고
    • Data dimensionality estimation methods: A survey
    • F. Camastra, "Data dimensionality estimation methods: A survey," Pattern Recognition, vol. 360, no. 12, pp. 2945-2954, 2003.
    • (2003) Pattern Recognition , vol.360 , Issue.12 , pp. 2945-2954
    • Camastra, F.1
  • 199
    • 0000325341 scopus 로고
    • On lines and planes of closest fit to systems of points in space
    • K. Pearson, "On lines and planes of closest fit to systems of points in space," Philosophical Mag., vol. 2, pp. 559-572, 1901.
    • (1901) Philosophical Mag. , vol.2 , pp. 559-572
    • Pearson, K.1
  • 201
    • 0024774330 scopus 로고
    • Neural networks and principal component analysis: Learning from examples without local minima
    • P. Baldi and K. Hornik, "Neural networks and principal component analysis: Learning from examples without local minima," Neural Networks, vol. 2, pp. 53-58, 1989.
    • (1989) Neural Networks , vol.2 , pp. 53-58
    • Baldi, P.1    Hornik, K.2
  • 203
    • 0000466122 scopus 로고    scopus 로고
    • Survey of independent component analysis
    • A. Hyvärinen, "Survey of independent component analysis," Neural Computing Surv., vol. 2, pp. 94-128, 1999.
    • (1999) Neural Computing Surv. , vol.2 , pp. 94-128
    • Hyvärinen, A.1
  • 204
    • 84950754164 scopus 로고
    • Exploratory projection pursuit
    • J. Friedman, "Exploratory projection pursuit," J. Amer. Statistical Assoc., vol. 82, pp. 249-266, 1987.
    • (1987) J. Amer. Statistical Assoc. , vol.82 , pp. 249-266
    • Friedman, J.1
  • 209
    • 0034704229 scopus 로고    scopus 로고
    • A global geometric framework for nonlinear dimensionality reduction
    • J. Tenenbaum, V. Silva, and J. Langford, "A global geometric framework for nonlinear dimensionality reduction," Science, vol. 290, no. 5500, pp. 2319-2323, 2000.
    • (2000) Science , vol.290 , Issue.5500 , pp. 2319-2323
    • Tenenbaum, J.1    Silva, V.2    Langford, J.3
  • 210
    • 0034704222 scopus 로고    scopus 로고
    • Nonlinear dimensionality reduction by locally linear embedding
    • S. Roweis and L. Saul, "Nonlinear dimensionality reduction by locally linear embedding," Science, vol. 290, no. 5500, pp. 2323-2326, 2000.
    • (2000) Science , vol.290 , Issue.5500 , pp. 2323-2326
    • Roweis, S.1    Saul, L.2
  • 211
    • 0042378381 scopus 로고    scopus 로고
    • Laplacian eigenmaps for dimensionality reduction and data representation
    • M. Belkin and P. Niyogi, "Laplacian eigenmaps for dimensionality reduction and data representation," Neural Computation, vol. 13, pp. 1373-1396, 2002.
    • (2002) Neural Computation , vol.13 , pp. 1373-1396
    • Belkin, M.1    Niyogi, P.2
  • 215
    • 33746476985 scopus 로고    scopus 로고
    • Diffusion maps and coarse-graining: A unified framework for dimensionality reduction, graph partitioning, and data set parameterization
    • Sep.
    • S. Lafon and A. Lee, "Diffusion maps and coarse-graining: A unified framework for dimensionality reduction, graph partitioning, and data set parameterization," IEEE Trans. Pattern Anal. Machine Intell., vol. 28, no. 9, pp. 1393-1403, Sep. 2006.
    • (2006) IEEE Trans. Pattern Anal. Machine Intell. , vol.28 , Issue.9 , pp. 1393-1403
    • Lafon, S.1    Lee, A.2
  • 220
    • 0036509717 scopus 로고    scopus 로고
    • Redefining clustering for high-dimensional applications
    • Feb.
    • C. Aggarwal and P. Yu, "Redefining clustering for high-dimensional applications," IEEE Trans. Knowledge Data Eng., vol. 14, no. 2, pp. 210-225, Feb. 2002.
    • (2002) IEEE Trans. Knowledge Data Eng. , vol.14 , Issue.2 , pp. 210-225
    • Aggarwal, C.1    Yu, P.2
  • 221
    • 0000835955 scopus 로고    scopus 로고
    • Optimal grid-clustering: Towards breaking the curse of dimensionality in high-dimensional clustering
    • A. Hinneburg and D. Keim, "Optimal grid-clustering: Towards breaking the curse of dimensionality in high-dimensional clustering," in Proc. 25th VLDB Conf., 1999, pp. 506-517.
    • (1999) Proc. 25th VLDB Conf. , pp. 506-517
    • Hinneburg, A.1    Keim, D.2
  • 222
    • 14644424597 scopus 로고    scopus 로고
    • Projective clustering by histograms
    • Mar.
    • E. Ng, A. Fu, and R. Wong, "Projective clustering by histograms," IEEE Trans. Knowledge Data Eng., vol. 17, no.3, pp. 369-383, Mar. 2005.
    • (2005) IEEE Trans. Knowledge Data Eng. , vol.17 , Issue.3 , pp. 369-383
    • Ng, E.1    Fu, A.2    Wong, R.3
  • 224
    • 13844297591 scopus 로고    scopus 로고
    • HARP: A practical projected clustering algorithm
    • Nov.
    • K. Yip, D. Cheung, and M. Ng, "HARP: A practical projected clustering algorithm," IEEE Trans. Knowledge Data Eng., vol. 16, no. 11, pp. 1387-1397, Nov. 2004.
    • (2004) IEEE Trans. Knowledge Data Eng. , vol.16 , Issue.11 , pp. 1387-1397
    • Yip, K.1    Cheung, D.2    Ng, M.3
  • 226
    • 3142768191 scopus 로고    scopus 로고
    • Biclustering algorithms for biological data analysis: A survey
    • S. Madeira and A. Oliveira, "Biclustering algorithms for biological data analysis: A survey," IEEE Trans. Computational Biol. Bioinform., vol. 1, no. 1, pp. 24-45, 2004.
    • (2004) IEEE Trans. Computational Biol. Bioinform. , vol.1 , Issue.1 , pp. 24-45
    • Madeira, S.1    Oliveira, A.2
  • 228
    • 33746208817 scopus 로고    scopus 로고
    • Interrelated two-way clustering and its application on gene expression data
    • DOI 10.1142/S0218213005002272, PII S0218213005002272
    • C. Tang and A. Zhang, "Interrelated two-way clustering and its application on gene expression data," Int. J. Artificial Intell. Tools, vol. 14, pp. 577-597, 2005. (Pubitemid 44099540)
    • (2005) International Journal on Artificial Intelligence Tools , vol.14 , Issue.4 , pp. 577-597
    • Tang, C.1    Zhang, A.2
  • 230
    • 0038109937 scopus 로고    scopus 로고
    • Coupled two-way clustering analysis of breast cancer and colon cancer gene expression data
    • G. Getz, H. Gal, I. Kela, D. Notterman, and E. Domany, "Coupled two-way clustering analysis of breast cancer and colon cancer gene expression data," Bioinformatics, vol. 19, pp. 1079-1089, 2003.
    • (2003) Bioinformatics , vol.19 , pp. 1079-1089
    • Getz, G.1    Gal, H.2    Kela, I.3    Notterman, D.4    Domany, E.5
  • 231
    • 84927511887 scopus 로고
    • Direct clustering of a data matrix
    • J. Hartigan, "Direct clustering of a data matrix," J. Amer. Statistical Assoc., vol. 67, no. 337, pp. 123-129, 1972.
    • (1972) J. Amer. Statistical Assoc. , vol.67 , Issue.337 , pp. 123-129
    • Hartigan, J.1
  • 232
    • 0002971338 scopus 로고
    • A permutation based algorithm for block clustering
    • D. Duffy and A. Quiroz, "A permutation based algorithm for block clustering," J. Classification, vol. 8, pp. 65-91, 1991.
    • (1991) J. Classification , vol.8 , pp. 65-91
    • Duffy, D.1    Quiroz, A.2
  • 234
    • 0041627879 scopus 로고    scopus 로고
    • Extracting conserved gene expression motifs from gene expression data
    • T. Murali and S. Kasif, "Extracting conserved gene expression motifs from gene expression data," in Proc. Pacific Symp. Biocomputing, 2003, vol. 8, pp. 77-88.
    • (2003) Proc. Pacific Symp. Biocomputing , vol.8 , pp. 77-88
    • Murali, T.1    Kasif, S.2
  • 236
    • 11244306358 scopus 로고    scopus 로고
    • Discovering statistically significant biclusters in gene expression data
    • A. Tanay, R. Sharan, and R. Shamir, "Discovering statistically significant biclusters in gene expression data," Bioinformatics, vol. 18, pp. S136-S144, 2002.
    • (2002) Bioinformatics , vol.18
    • Tanay, A.1    Sharan, R.2    Shamir, R.3
  • 240
    • 33645659540 scopus 로고    scopus 로고
    • Biclustering of expression data with evolutionary computation
    • May
    • F. Divina and J. Aguilar-Ruiz, "Biclustering of expression data with evolutionary computation," IEEE Trans. Knowledge Data Eng., vol. 18, no. 5, pp. 590-602, May 2006.
    • (2006) IEEE Trans. Knowledge Data Eng. , vol.18 , Issue.5 , pp. 590-602
    • Divina, F.1    Aguilar-Ruiz, J.2
  • 241
    • 65449117238 scopus 로고    scopus 로고
    • Biclustering of microarray data with MOSPO based on crowding distance
    • J. Liu, Z. Li, X. Hu, and Y. Chen, "Biclustering of microarray data with MOSPO based on crowding distance," BMC Bioinform., vol. 10, no. Suppl. 4, p. S9, 2009.
    • (2009) BMC Bioinform. , vol.10 , Issue.SUPPL. 4
    • Liu, J.1    Li, Z.2    Hu, X.3    Chen, Y.4
  • 242
    • 67549147249 scopus 로고    scopus 로고
    • Fuzzy-adaptive-subspace-iteration-based two way clustering of microarray data
    • J. Shaik and M. Yeasin, "Fuzzy-adaptive-subspace-iteration-based two way clustering of microarray data," IEEE/ACM Trans. Computational Biol. Bioinform., vol. 6, no. 2, pp. 244-259, 2009.
    • (2009) IEEE/ACM Trans. Computational Biol. Bioinform. , vol.6 , Issue.2 , pp. 244-259
    • Shaik, J.1    Yeasin, M.2
  • 243
    • 69849086336 scopus 로고    scopus 로고
    • QUBIC: A qualitative biclustering algorithm for analyses of gene expression data
    • G. Li, Q, Ma, H. Tang, A. Paterson, and Y. Xu, "QUBIC: A qualitative biclustering algorithm for analyses of gene expression data," Nucleic Acids Res., vol. 37, no. 15, p. e101, 2009.
    • (2009) Nucleic Acids Res. , vol.37 , Issue.15
    • Li, G.1    Ma, Q.2    Tang, H.3    Paterson, A.4    Xu, Y.5
  • 244
    • 76849109141 scopus 로고    scopus 로고
    • Identification of regulatory modules in time series gene expression data using a linear time biclustering algorithm
    • S. Madeira, M. Teixeira, I. Sá-correia, and A. Oliveira, "Identification of regulatory modules in time series gene expression data using a linear time biclustering algorithm," IEEE/ACM Trans. Computational Biol. Bioinform., vol. 7, no. 1, pp. 153-165, 2010.
    • (2010) IEEE/ACM Trans. Computational Biol. Bioinform. , vol.7 , Issue.1 , pp. 153-165
    • Madeira, S.1    Teixeira, M.2    Sá-Correia, I.3    Oliveira, A.4
  • 245
    • 57949105676 scopus 로고    scopus 로고
    • Biclustering via optimal re-ordering of data matrices in systems biology: Rigorous methods and comparative studies
    • P. DiMaggio, Jr, S. McAllister, C. Floudas, X. Feng, J. Rabinowitz, and H. Rabitz, "Biclustering via optimal re-ordering of data matrices in systems biology: Rigorous methods and comparative studies," BMC Bioinform., vol. 9, p. 458, 2008.
    • (2008) BMC Bioinform. , vol.9 , pp. 458
    • DiMaggio Jr., P.1    McAllister, S.2    Floudas, C.3    Feng, X.4    Rabinowitz, J.5    Rabitz, H.6
  • 248
    • 33646383088 scopus 로고    scopus 로고
    • Dimension reduction for classification with gene expression microarray data
    • J. Dai, L. Lieu, and D. Rocke, "Dimension reduction for classification with gene expression microarray data," Statistical Applic. Genetics Molecular Biol., vol. 5, no. 1, pp. 1-15, 2006.
    • (2006) Statistical Applic. Genetics Molecular Biol. , vol.5 , Issue.1 , pp. 1-15
    • Dai, J.1    Lieu, L.2    Rocke, D.3
  • 250
    • 49249124314 scopus 로고    scopus 로고
    • Investigating the efficacy of nonlinear dimensionality reduction schemes in classifying gene and protein expression studies
    • G. Lee, C. Rodriguez, and A. Madabhushi, "Investigating the efficacy of nonlinear dimensionality reduction schemes in classifying gene and protein expression studies," IEEE/ACM Trans. Computational Biol. Bioinform., vol. 5, no. 3, pp. 368-384, 2008.
    • (2008) IEEE/ACM Trans. Computational Biol. Bioinform. , vol.5 , Issue.3 , pp. 368-384
    • Lee, G.1    Rodriguez, C.2    Madabhushi, A.3
  • 251
    • 25444512607 scopus 로고    scopus 로고
    • Sample phenotype clusters in high-density oligonucleotide microarray data sets are revealed using isomap, a nonlinear algorithm
    • K. Dawson, R. Rodriguez, and W. Malyj, "Sample phenotype clusters in high-density oligonucleotide microarray data sets are revealed using isomap, a nonlinear algorithm," BMC Bioinform., vol. 6, p. 195, 2005.
    • (2005) BMC Bioinform. , vol.6 , pp. 195
    • Dawson, K.1    Rodriguez, R.2    Malyj, W.3
  • 252
    • 2342431962 scopus 로고    scopus 로고
    • Approximate geodesic distances reveal biologically relevant structures in microarray data
    • J. Nilsson, T. Fioretos, M. Höglund, and M. Fontes, "Approximate geodesic distances reveal biologically relevant structures in microarray data," Bioinformatics, vol. 20, no. 6, pp. 874-880, 2004.
    • (2004) Bioinformatics , vol.20 , Issue.6 , pp. 874-880
    • Nilsson, J.1    Fioretos, T.2    Höglund, M.3    Fontes, M.4
  • 253
    • 84856999267 scopus 로고    scopus 로고
    • Feature dimension reduction for microarray data analysis using locally linear embedding
    • C. Shi and L. Chen, "Feature dimension reduction for microarray data analysis using locally linear embedding," in Proc. 3rd Asia Pacific Bioinformatics Conf. - APBC'05, 2005, pp. 211-217.
    • (2005) Proc. 3rd Asia Pacific Bioinformatics Conf. - APBC'05 , pp. 211-217
    • Shi, C.1    Chen, L.2
  • 254
    • 48749129520 scopus 로고    scopus 로고
    • Kernel based nonlinear dimensionality reduction and classification for genomic microarray
    • X. Liand L. Shu, "Kernel based nonlinear dimensionality reduction and classification for genomic microarray," Sensors, vol. 8, pp. 4186-4200, 2008.
    • (2008) Sensors , vol.8 , pp. 4186-4200
    • Liand, X.1    Shu, L.2
  • 255
    • 22544434628 scopus 로고    scopus 로고
    • Mining the structural knowledge of high-dimensional medical data using isomap
    • S. Weng, C. Zhang, Z. Lin, and X. Zhang, "Mining the structural knowledge of high-dimensional medical data using isomap," Med. Biological Eng. Computing, vol. 43, pp. 410-412, 2005.
    • (2005) Med. Biological Eng. Computing , vol.43 , pp. 410-412
    • Weng, S.1    Zhang, C.2    Lin, Z.3    Zhang, X.4
  • 256
    • 51549083610 scopus 로고    scopus 로고
    • Clustering of high-dimensional gene expression data with feature filtering methods and diffusion maps
    • R. Xu, S. Damelin, B. Nadler, and D. Wunsch, II, "Clustering of high-dimensional gene expression data with feature filtering methods and diffusion maps," in Proc. Int. Conf. Biomed. Eng. Inform., 2008, pp. 245-2499.
    • (2008) Proc. Int. Conf. Biomed. Eng. Inform. , pp. 245-2499
    • Xu, R.1    Damelin, S.2    Nadler, B.3    Wunsch II, D.4
  • 257
    • 41249085743 scopus 로고    scopus 로고
    • Diffusion maps clustering of magnetic resonance Q-ball imaging segmentation
    • Article ID 526906
    • D. Wassermann, M. Descoteaux, and R. Deriche, "Diffusion maps clustering of magnetic resonance Q-ball imaging segmentation," Int. J. Biomed. Imaging, vol. 2008, 2008, Article ID 526906.
    • (2008) Int. J. Biomed. Imaging , vol.2008
    • Wassermann, D.1    Descoteaux, M.2    Deriche, R.3
  • 258
    • 0141682915 scopus 로고    scopus 로고
    • Application of the method of elastic maps in analysis of genetic texts
    • A. Gorban, A. Zinovyev, and D. Wunsch, II, "Application of the method of elastic maps in analysis of genetic texts," in Proc. Int. Joint Conf. Neural Networks, 2003, vol. 3, pp. 1826-1831.
    • (2003) Proc. Int. Joint Conf. Neural Networks , vol.3 , pp. 1826-1831
    • Gorban, A.1    Zinovyev, A.2    Wunsch II, D.3
  • 260
    • 24044470614 scopus 로고    scopus 로고
    • Clustering of time series data - A survey
    • T. Liao, "Clustering of time series data - A survey," Pattern Recognition, vol. 38, pp. 1857-1874, 2005.
    • (2005) Pattern Recognition , vol.38 , pp. 1857-1874
    • Liao, T.1
  • 262
    • 2042437650 scopus 로고    scopus 로고
    • Initial sequencing and analysis of the human genome
    • Consortium, I.H.G.S., "Initial sequencing and analysis of the human genome," Nature, vol. 409, pp. 860-921, 2001.
    • (2001) Nature , vol.409 , pp. 860-921
    • Consortium, I.H.G.S.1
  • 265
    • 0033740039 scopus 로고    scopus 로고
    • Towards a covering set of protein family profiles
    • A. Heger and L. Holm, "Towards a covering set of protein family profiles," Progress Biophys. Molecular Biol., vol. 73, pp. 321-337, 2000.
    • (2000) Progress Biophys. Molecular Biol. , vol.73 , pp. 321-337
    • Heger, A.1    Holm, L.2
  • 266
    • 0033318713 scopus 로고    scopus 로고
    • Datascope: Mining biological sequences
    • S. Kasif, "Datascope: Mining biological sequences," IEEE Intell. Syst., vol. 14, no. 6, pp. 38-43, 1999.
    • (1999) IEEE Intell. Syst. , vol.14 , Issue.6 , pp. 38-43
    • Kasif, S.1
  • 267
    • 0036322695 scopus 로고    scopus 로고
    • Target space for structural genomics revisited
    • J. Liu and B. Rost, "Target space for structural genomics revisited," Bioinformatics, vol. 18, no. 7, pp. 922-933, 2002.
    • (2002) Bioinformatics , vol.18 , Issue.7 , pp. 922-933
    • Liu, J.1    Rost, B.2
  • 269
    • 0031829372 scopus 로고    scopus 로고
    • Removing near-neighbor redundancy from large protein sequence collections
    • L. Holm and C. Sander, "Removing near-neighbor redundancy from large protein sequence collections," Bioinformatics, vol. 14, pp. 423-429, 1998.
    • (1998) Bioinformatics , vol.14 , pp. 423-429
    • Holm, L.1    Sander, C.2
  • 270
    • 0035072551 scopus 로고    scopus 로고
    • Clustering of highly homologous sequences to reduce the size of large protein databases
    • W. Li, L. Jaroszewski, and A. Godzik, "Clustering of highly homologous sequences to reduce the size of large protein databases," Bioinformatics, vol. 17, pp. 282-283, 2001.
    • (2001) Bioinformatics , vol.17 , pp. 282-283
    • Li, W.1    Jaroszewski, L.2    Godzik, A.3
  • 271
    • 0036169928 scopus 로고    scopus 로고
    • Tolerating some redundancy significantly speeds up clustering of large protein databases
    • W. Li, L. Jaroszewski, and A. Godzik, "Tolerating some redundancy significantly speeds up clustering of large protein databases," Bioinformatics, vol. 18, pp. 77-82, 2002.
    • (2002) Bioinformatics , vol.18 , pp. 77-82
    • Li, W.1    Jaroszewski, L.2    Godzik, A.3
  • 272
    • 0033944826 scopus 로고    scopus 로고
    • GeneRAGE: A robust algorithm for sequence clustering and domain detection
    • A. Enright and C. Ouzounis, "GeneRAGE: A robust algorithm for sequence clustering and domain detection," Bioinformatics, vol. 16, pp. 451-457, 2000.
    • (2000) Bioinformatics , vol.16 , pp. 451-457
    • Enright, A.1    Ouzounis, C.2
  • 273
    • 0031744176 scopus 로고    scopus 로고
    • Domain identification by clustering sequence alignments
    • X. Guan and L. Du, "Domain identification by clustering sequence alignments," Bioinformatics, vol. 14, pp. 783-788, 1998.
    • (1998) Bioinformatics , vol.14 , pp. 783-788
    • Guan, X.1    Du, L.2
  • 274
    • 0033523854 scopus 로고    scopus 로고
    • A combined algorithm for genome-wide prediction of protein function
    • E. Marcotte, M. Pellegrini, M. Thompson, T. Yeates, and D. Eisenberg, "A combined algorithm for genome-wide prediction of protein function," Nature, vol. 402, pp. 83-86, 1999.
    • (1999) Nature , vol.402 , pp. 83-86
    • Marcotte, E.1    Pellegrini, M.2    Thompson, M.3    Yeates, T.4    Eisenberg, D.5
  • 275
    • 0032726692 scopus 로고    scopus 로고
    • ProtoMap: Automatic classification of protein sequences, a hierarchy of protein families, and local maps of the protein space
    • G. Yona, N. Linial, and M. Linial, "ProtoMap: Automatic classification of protein sequences, a hierarchy of protein families, and local maps of the protein space," Proteins: Structure, Function Genetics, vol. 37, pp. 360-378, 1999.
    • (1999) Proteins: Structure, Function Genetics , vol.37 , pp. 360-378
    • Yona, G.1    Linial, N.2    Linial, M.3
  • 276
    • 0032703998 scopus 로고    scopus 로고
    • d2-cluster: A validated method for clustering EST and full-length cDNA sequences
    • J. Burke, D. Davison, and W. Hide, "d2-Cluster: A validated method for clustering EST and full-length cDNA sequences," Genome Res., vol. 9, pp. 1135-1142, 1999.
    • (1999) Genome Res. , vol.9 , pp. 1135-1142
    • Burke, J.1    Davison, D.2    Hide, W.3
  • 277
    • 17844407888 scopus 로고    scopus 로고
    • ECgene: Genome-based EST clustering and gene modeling for alternative splicing
    • N. Kim, S. Shin, and S. Lee, "ECgene: Genome-based EST clustering and gene modeling for alternative splicing," Genome Res., vol. 15, no. 4, pp. 566-576, 2005.
    • (2005) Genome Res. , vol.15 , Issue.4 , pp. 566-576
    • Kim, N.1    Shin, S.2    Lee, S.3
  • 278
    • 0032727821 scopus 로고    scopus 로고
    • A comprehensive approach to clustering of expressed human gene sequence: The sequence tag alignment and consensus knowledge base
    • R. Miller, A. Christoffels, C. Gopalakrishnan, J. Burke, A. Ptitsyn, T. Broveak, and W. Hide, "A comprehensive approach to clustering of expressed human gene sequence: The sequence tag alignment and consensus knowledge base," Genome Res., vol. 9, no. 11, pp. 1143-1155, 1999.
    • (1999) Genome Res. , vol.9 , Issue.11 , pp. 1143-1155
    • Miller, R.1    Christoffels, A.2    Gopalakrishnan, C.3    Burke, J.4    Ptitsyn, A.5    Broveak, T.6    Hide, W.7
  • 280
    • 69849113659 scopus 로고    scopus 로고
    • k-link EST clustering: Evaluating error introduced by chimeric sequences under different degrees of linkage
    • L. Bragg and G. Stone, "k-link EST clustering: Evaluating error introduced by chimeric sequences under different degrees of linkage," Bioinformatics, vol. 25, no. 18, pp. 2302-2308, 2009.
    • (2009) Bioinformatics , vol.25 , Issue.18 , pp. 2302-2308
    • Bragg, L.1    Stone, G.2
  • 281
    • 46249096295 scopus 로고    scopus 로고
    • An overview of the wcd EST clustering tool
    • S. Hazelhurst, W. Hide, Z. Lipták, and R. Nogueira, "An overview of the wcd EST clustering tool," Bioinformatics, vol. 24, no. 13, pp. 1542-1546, 2008.
    • (2008) Bioinformatics , vol.24 , Issue.13 , pp. 1542-1546
    • Hazelhurst, S.1    Hide, W.2    Lipták, Z.3    Nogueira, R.4
  • 284
    • 0014757386 scopus 로고
    • A general method applicable to the search for similarities in the amino acid sequence of two proteins
    • S. Needleman and C. Wunsch, "A general method applicable to the search for similarities in the amino acid sequence of two proteins," J. Molecular Biol., vol. 48, pp. 443-453, 1970.
    • (1970) J. Molecular Biol. , vol.48 , pp. 443-453
    • Needleman, S.1    Wunsch, C.2
  • 285
    • 0019144657 scopus 로고
    • New stratigraphic correlation techniques
    • T. Smith and M. Waterman, "New stratigraphic correlation techniques," J. Geol., vol. 88, pp. 451-457, 1980.
    • (1980) J. Geol. , vol.88 , pp. 451-457
    • Smith, T.1    Waterman, M.2
  • 287
    • 0023989064 scopus 로고
    • Improved tools for biological sequence comparison
    • W. Pearson and D. Lipman, "Improved tools for biological sequence comparison," Proc. Nat. Acad. Sci. USA, vol. 85, pp. 2444-2448, 1988.
    • (1988) Proc. Nat. Acad. Sci. USA , vol.85 , pp. 2444-2448
    • Pearson, W.1    Lipman, D.2
  • 288
    • 0030801002 scopus 로고    scopus 로고
    • Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
    • S. Altschul, T. Madden, A. Schäffer, J. Zhang, Z. Zhang, W. Miller, and D. Lipman, "Gapped BLAST and PSI-BLAST: A new generation of protein database search programs," Nucleic Acids Res., vol. 25, no. 17, pp. 3389-3402, 1997.
    • (1997) Nucleic Acids Res. , vol.25 , Issue.17 , pp. 3389-3402
    • Altschul, S.1    Madden, T.2    Schäffer, A.3    Zhang, J.4    Zhang, Z.5    Miller, W.6    Lipman, D.7
  • 289
    • 0033049747 scopus 로고    scopus 로고
    • A RAPID algorithm for sequence database comparisons: Application to the identification of vector contamination in the EMBL databases
    • C. Miller, J. Gurd, and A. Brass, "A RAPID algorithm for sequence database comparisons: Application to the identification of vector contamination in the EMBL databases," Bioinformatics, vol. 15, pp. 111-121, 1999.
    • (1999) Bioinformatics , vol.15 , pp. 111-121
    • Miller, C.1    Gurd, J.2    Brass, A.3
  • 290
    • 0033832676 scopus 로고    scopus 로고
    • Conservation, regulation, synteny, and introns in a large-scale C. Briggsae - C. Elegans genomic alignment
    • W. Kent and A. Zahler, "Conservation, regulation, synteny, and introns in a large-scale C. Briggsae - C. elegans genomic alignment," Genome Res., vol. 10, pp. 1115-1125, 2000.
    • (2000) Genome Res. , vol.10 , pp. 1115-1125
    • Kent, W.1    Zahler, A.2
  • 292
    • 0031854952 scopus 로고    scopus 로고
    • DIALIGN: Finding local similarities by multiple sequence alignment
    • B. Morgenstern, K. Frech, A. Dress, and T. Werner, "DIALIGN: Finding local similarities by multiple sequence alignment," Bioinformatics, vol. 14, pp. 290-294, 1998.
    • (1998) Bioinformatics , vol.14 , pp. 290-294
    • Morgenstern, B.1    Frech, K.2    Dress, A.3    Werner, T.4
  • 293
    • 23144452802 scopus 로고    scopus 로고
    • PAR-ALIGN: Rapid and sensitive sequence similarity searches powered by parallel computing technology
    • P. Sæbø, S. Andersen, J. Myrseth, J. Laerdahl, and T. Rognes, "PAR-ALIGN: Rapid and sensitive sequence similarity searches powered by parallel computing technology," Nucleic Acids Res., vol. 23, pp. W535-W539, 2005.
    • (2005) Nucleic Acids Res. , vol.23
    • Sæbø, P.1    Andersen, S.2    Myrseth, J.3    Laerdahl, J.4    Rognes, T.5
  • 295
    • 0034053725 scopus 로고    scopus 로고
    • A greedy algorithm for aligning DNA sequences
    • Z. Zhang, S. Schwartz, L. Wagner, and W. Miller, "A greedy algorithm for aligning DNA sequences," J. Comput. Biol., vol. 7, pp. 203-214, 2000.
    • (2000) J. Comput. Biol. , vol.7 , pp. 203-214
    • Zhang, Z.1    Schwartz, S.2    Wagner, L.3    Miller, W.4
  • 297
    • 0001899680 scopus 로고    scopus 로고
    • The metric space of proteins - Comparative study of clustering algorithms
    • O. Sasson, N. Linial, and M. Linial, "The metric space of proteins - Comparative study of clustering algorithms," Bioinformatics, vol. 18, pp. s14-s21, 2002.
    • (2002) Bioinformatics , vol.18
    • Sasson, O.1    Linial, N.2    Linial, M.3
  • 299
    • 65549168659 scopus 로고    scopus 로고
    • Partitioning clustering algorithms for protein sequence data sets
    • S. Fayech, N. Essoussi, and M. Limam, "Partitioning clustering algorithms for protein sequence data sets," BioData Mining, vol. 2, p. 3, 2009.
    • (2009) BioData Mining , vol.2 , pp. 3
    • Fayech, S.1    Essoussi, N.2    Limam, M.3
  • 301
    • 33947422945 scopus 로고    scopus 로고
    • SEQOPTICS: A protein sequence clustering system
    • Y. Chen, K. Reilly, A. Sprague, and Z. Guan, "SEQOPTICS: A protein sequence clustering system," BMC Bioinformat., vol. 7, no. Suppl 4, p. S10, 2006.
    • (2006) BMC Bioinformat. , vol.7 , Issue.SUPPL. 4
    • Chen, Y.1    Reilly, K.2    Sprague, A.3    Guan, Z.4
  • 306
    • 2642570831 scopus 로고    scopus 로고
    • Time series clustering with ARMA mixtures
    • Y. Xiong and D. Yeung, "Time series clustering with ARMA mixtures," Pattern Recognition, vol. 37, pp. 1675-1689, 2004.
    • (2004) Pattern Recognition , vol.37 , pp. 1675-1689
    • Xiong, Y.1    Yeung, D.2
  • 307
    • 0036532775 scopus 로고    scopus 로고
    • Bayesian clustering by dynamics
    • M. Ramoni, P. Sebastiani, and P. Cohen, "Bayesian clustering by dynamics," Machine Learning, vol. 47, no. 1, pp. 91-121, 2002.
    • (2002) Machine Learning , vol.47 , Issue.1 , pp. 91-121
    • Ramoni, M.1    Sebastiani, P.2    Cohen, P.3
  • 308
    • 0008040518 scopus 로고    scopus 로고
    • Probabilistic model-based clustering of multivariate and sequential data
    • San Francisco, CA
    • P. Smyth, "Probabilistic model-based clustering of multivariate and sequential data," in Proc. 7th Int. Workshop Artificial Intelligence Statistics, San Francisco, CA, 1999, pp. 299-304.
    • (1999) Proc. 7th Int. Workshop Artificial Intelligence Statistics , pp. 299-304
    • Smyth, P.1
  • 310
    • 0002689560 scopus 로고    scopus 로고
    • Trajectory clustering using mixtures of regression models
    • S. Chaudhuri and D. Madigan, Eds., New York ACM Press
    • S. Gaffney and P. Smyth, "Trajectory clustering using mixtures of regression models," in Proc. 5th ACM SIGKDD Int. Conf. Knowledge Discovery Data Mining, S. Chaudhuri and D. Madigan, Eds., New York, 1999, pp. 63-72, ACM Press.
    • (1999) Proc. 5th ACM SIGKDD Int. Conf. Knowledge Discovery Data Mining , pp. 63-72
    • Gaffney, S.1    Smyth, P.2
  • 311
    • 2642567171 scopus 로고    scopus 로고
    • Using dynamic time warping to bootstrap HMM-based clustering of time series
    • R. Sun and C. Giles, Eds. Berlin, Germany: Springer-Verlag
    • T. Oates, L. Firoiu, and P. Cohen, "Using dynamic time warping to bootstrap HMM-based clustering of time series," in Sequence Learning, LNAI 1828, R. Sun and C. Giles, Eds. Berlin, Germany: Springer-Verlag, 2000, pp. 35-52.
    • (2000) Sequence Learning, LNAI 1828 , pp. 35-52
    • Oates, T.1    Firoiu, L.2    Cohen, P.3
  • 312
    • 84898995769 scopus 로고    scopus 로고
    • Clustering sequences with hidden Markov models
    • M. Mozer, M. Jordan, and T. Petsche, Eds. Cambridge, MA: MIT Press
    • P. Smyth, "Clustering sequences with hidden Markov models," in Advances in Neural Information Processing 9, M. Mozer, M. Jordan, and T. Petsche, Eds. Cambridge, MA: MIT Press, 1997, pp. 648-654.
    • (1997) Advances in Neural Information Processing , vol.9 , pp. 648-654
    • Smyth, P.1
  • 313
    • 0024610919 scopus 로고
    • A tutorial on hidden Markov models and selected applications in speech recognition
    • L. Rabiner, "A tutorial on hidden Markov models and selected applications in speech recognition," Proc. IEEE, vol. 77, pp. 257-286, 1989.
    • (1989) Proc. IEEE , vol.77 , pp. 257-286
    • Rabiner, L.1
  • 314
    • 0028181441 scopus 로고
    • Hidden Markov models in computational biology: Applications to protein modeling
    • A. Krogh, M. Brown, I. Mian, K. Sjölander, and D. Haussler, "Hidden Markov models in computational biology: Applications to protein modeling," J. Molecular Biol., vol. 235, pp. 1501-1531, 1994.
    • (1994) J. Molecular Biol. , vol.235 , pp. 1501-1531
    • Krogh, A.1    Brown, M.2    Mian, I.3    Sjölander, K.4    Haussler, D.5
  • 315
    • 0029887381 scopus 로고    scopus 로고
    • Hidden Markov models for sequence analysis: Extension and analysis of the basic method
    • R. Hughey and A. Krogh, "Hidden Markov models for sequence analysis: Extension and analysis of the basic method," CABIOS, vol. 12, no. 2, pp. 95-107, 1996.
    • (1996) CABIOS , vol.12 , Issue.2 , pp. 95-107
    • Hughey, R.1    Krogh, A.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.