-
1
-
-
21744437040
-
Incremental computation of transitive closure and greedy alignment
-
Apostolico, A. and Hein, J. (eds)
-
Abdeddaïm, S. (1997) Incremental computation of transitive closure and greedy alignment. In Apostolico, A. and Hein, J. (eds), Proceedings of the 8th Annual Symposium on Combinatorial Pattern Matching. Lecture Notes Comput. Sci., 1264, 167-179.
-
(1997)
Proceedings of the 8th Annual Symposium on Combinatorial Pattern Matching. Lecture Notes Comput. Sci.
, vol.1264
, pp. 167-179
-
-
Abdeddaïm, S.1
-
2
-
-
0031008399
-
A natural classification of the basic helix-loop-helix class of transcription factors
-
Atchley, W.R. and Fitch, W.M. (1997) A natural classification of the basic helix-loop-helix class of transcription factors. Proc. Natl Acad. Sci. USA, 94, 5172-5176.
-
(1997)
Proc. Natl Acad. Sci. USA
, vol.94
, pp. 5172-5176
-
-
Atchley, W.R.1
Fitch, W.M.2
-
3
-
-
9044236155
-
Genetic variation of recent Alu insertions in human populations
-
Batzer, M.A. et al. (1996) Genetic variation of recent Alu insertions in human populations. J. Mol. Evol , 42, 22-29.
-
(1996)
J. Mol. Evol
, vol.42
, pp. 22-29
-
-
Batzer, M.A.1
-
4
-
-
0000303438
-
The multiple sequence alignment problem in biology
-
Carrillo, H. and Lipman, D. (1988) The multiple sequence alignment problem in biology. SIAM J Appl Math., 48, 1073-1082.
-
(1988)
SIAM J Appl Math.
, vol.48
, pp. 1073-1082
-
-
Carrillo, H.1
Lipman, D.2
-
5
-
-
0024297354
-
Multiple sequence alignment with hierarchical clustering
-
Corpet, F. (1988) Multiple sequence alignment with hierarchical clustering. Nucleic Acids Res., 16, 10881-10890.
-
(1988)
Nucleic Acids Res.
, vol.16
, pp. 10881-10890
-
-
Corpet, F.1
-
6
-
-
0000228203
-
A model of evolutionary change in proteins
-
Dayhoff, M.O., Schwartz, R.M. and Orcutt, B.C. (1978) A model of evolutionary change in proteins. Atlas Protein Seq. Struct., 6, 345-362.
-
(1978)
Atlas Protein Seq. Struct.
, vol.6
, pp. 345-362
-
-
Dayhoff, M.O.1
Schwartz, R.M.2
Orcutt, B.C.3
-
7
-
-
0030996742
-
Match-Box-server: A multiple sequence alignment tool placing emphasis on reliability
-
Depiereux, E., Baudoux, G., Briffeuil, P., Reginster, I., De Boll, X., Vinals, C. and Feytmans, E. (1996) Match-Box-server: a multiple sequence alignment tool placing emphasis on reliability. Comput. Applic. Biosci., 13, 249-256.
-
(1996)
Comput. Applic. Biosci.
, vol.13
, pp. 249-256
-
-
Depiereux, E.1
Baudoux, G.2
Briffeuil, P.3
Reginster, I.4
De Boll, X.5
Vinals, C.6
Feytmans, E.7
-
8
-
-
0029880961
-
Gene conversion plays the major role in controlling the stability of large tandem repeats in yeast
-
Gangloff, S., Zou, H. and Rothstein, R. (1996) Gene conversion plays the major role in controlling the stability of large tandem repeats in yeast. EMBO J., 15, 1715-1725.
-
(1996)
EMBO J.
, vol.15
, pp. 1715-1725
-
-
Gangloff, S.1
Zou, H.2
Rothstein, R.3
-
9
-
-
0023084055
-
Progressive sequence alignment as a prerequisite to correct phylogenetic trees
-
Feng, D.F. and Doolittle, R.G. (1987) Progressive sequence alignment as a prerequisite to correct phylogenetic trees. J. Mol. Evol., 25, 351-360.
-
(1987)
J. Mol. Evol.
, vol.25
, pp. 351-360
-
-
Feng, D.F.1
Doolittle, R.G.2
-
11
-
-
0028118434
-
Protein family classification based on searching a database of blocks
-
Henikoff, S. and Henikoff, J.G. (1994) Protein family classification based on searching a database of blocks. Genomics, 19, 97-107.
-
(1994)
Genomics
, vol.19
, pp. 97-107
-
-
Henikoff, S.1
Henikoff, J.G.2
-
12
-
-
0028304908
-
On global sequence alignment
-
Huang, X. (1994) On global sequence alignment. Comput. Applic. Biosci., 10, 227-235.
-
(1994)
Comput. Applic. Biosci.
, vol.10
, pp. 227-235
-
-
Huang, X.1
-
13
-
-
0027912333
-
Detecting subtle sequence signals: A gibbs sampling strategy for multiple alignment
-
Lawrence, C.E., Altschul, S.F., Boguski, M.S., Liu, J.S., Neuwald, A.F. and Wootton, J.C. (1993) Detecting subtle sequence signals: A gibbs sampling strategy for multiple alignment. Science, 262, 208-213.
-
(1993)
Science
, vol.262
, pp. 208-213
-
-
Lawrence, C.E.1
Altschul, S.F.2
Boguski, M.S.3
Liu, J.S.4
Neuwald, A.F.5
Wootton, J.C.6
-
14
-
-
0028341506
-
Comparative analysis of multiple protein-sequence alignment methods
-
McClure, M.A., Vasi, T.K. and Fitch, W.M. (1994) Comparative analysis of multiple protein-sequence alignment methods. Mol. Biol. Evol., 11, 571-592.
-
(1994)
Mol. Biol. Evol.
, vol.11
, pp. 571-592
-
-
McClure, M.A.1
Vasi, T.K.2
Fitch, W.M.3
-
15
-
-
0029861894
-
Multiple DNA and protein sequence alignment based on segment-to-segment comparison
-
Morgenstern, B., Dress, A. and Werner, T. (1996) Multiple DNA and protein sequence alignment based on segment-to-segment comparison. Proc. Natl Acad. Sci. USA, 93, 12098-12103.
-
(1996)
Proc. Natl Acad. Sci. USA
, vol.93
, pp. 12098-12103
-
-
Morgenstern, B.1
Dress, A.2
Werner, T.3
-
16
-
-
0029833216
-
Sequence analysis of eukaryotic developmental proteins: Ancient and novel domains
-
Mushegian, A.R. and Koonin, E.V. (1996) Sequence analysis of eukaryotic developmental proteins: Ancient and novel domains. Genetics, 144, 817-828.
-
(1996)
Genetics
, vol.144
, pp. 817-828
-
-
Mushegian, A.R.1
Koonin, E.V.2
-
17
-
-
0014757386
-
A general method applicable to the search for similarities in the amino acid sequence of two proteins
-
Needleman, S.B. and Wunsch, C.D. (1970) A general method applicable to the search for similarities in the amino acid sequence of two proteins. J. Mol. Biol., 48, 443-453.
-
(1970)
J. Mol. Biol.
, vol.48
, pp. 443-453
-
-
Needleman, S.B.1
Wunsch, C.D.2
-
18
-
-
0028270992
-
Detecting patterns in protein sequences
-
Neuwald, A.F. and Green, P. (1994) Detecting patterns in protein sequences. J. Mol. Biol., 239, 698-712.
-
(1994)
J. Mol. Biol.
, vol.239
, pp. 698-712
-
-
Neuwald, A.F.1
Green, P.2
-
19
-
-
0029144601
-
Gibbs motif sampling: Detection of bacterial outer membrane protein repeats
-
Neuwald, A.F., Liu, J.S. and Lawrence, C.E. (1995) Gibbs motif sampling: Detection of bacterial outer membrane protein repeats. Protein Sci., 4, 1618-1632.
-
(1995)
Protein Sci.
, vol.4
, pp. 1618-1632
-
-
Neuwald, A.F.1
Liu, J.S.2
Lawrence, C.E.3
-
20
-
-
0030788541
-
Extracting protein alignment models from the sequence database
-
Neuwald, A.F., Liu, J.S., Lipman, D.J. and Lawrence, C.E. (1997) Extracting protein alignment models from the sequence database. Nucleic Acids Res., 25, 1665-1677.
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 1665-1677
-
-
Neuwald, A.F.1
Liu, J.S.2
Lipman, D.J.3
Lawrence, C.E.4
-
21
-
-
0027275486
-
Molecular mechanisms of transposition and its control
-
Plasterk, R.H.A. (1993) Molecular mechanisms of transposition and its control. Cell, 74, 781-786.
-
(1993)
Cell
, vol.74
, pp. 781-786
-
-
Plasterk, R.H.A.1
-
22
-
-
0026527758
-
Pattern-induced multi-sequence alignment (PIMA) algorithm employing secondary structure-dependent gap penalties for use in comparative protein modeling
-
Smith, R.F. and Smith, T.F. (1992) Pattern-induced multi-sequence alignment (PIMA) algorithm employing secondary structure-dependent gap penalties for use in comparative protein modeling. Protein Eng., 5, 35-41.
-
(1992)
Protein Eng.
, vol.5
, pp. 35-41
-
-
Smith, R.F.1
Smith, T.F.2
-
24
-
-
0039384089
-
Improving the divide-and-conquer approach of sum-of-pairs multiple sequence alignment
-
Stoye, J., Perrey, S.W. and Dress, A. (1997) Improving the divide-and-conquer approach of sum-of-pairs multiple sequence alignment. Appl. Math. Lett., 10, 67-63.
-
(1997)
Appl. Math. Lett.
, vol.10
, pp. 67-163
-
-
Stoye, J.1
Perrey, S.W.2
Dress, A.3
-
25
-
-
0027968068
-
CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
-
Thompson, J.D., Higgins, D.G. and Gibson, T.J. (1994) CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res., 22, 4673-4680.
-
(1994)
Nucleic Acids Res.
, vol.22
, pp. 4673-4680
-
-
Thompson, J.D.1
Higgins, D.G.2
Gibson, T.J.3
-
26
-
-
0029884395
-
A general method for fast multiple sequence alignment
-
Tonges, U., Perrey, S.W., Stoye, J. and Dress, A. (1996) A general method for fast multiple sequence alignment. Gene, 172, GC33-41.
-
(1996)
Gene
, vol.172
-
-
Tonges, U.1
Perrey, S.W.2
Stoye, J.3
Dress, A.4
-
27
-
-
0028047892
-
Sequence alignment and penalty choice - Review of concepts, case studies and implications
-
Vingron, M. and Waterman, M.S. (1994) Sequence alignment and penalty choice - review of concepts, case studies and implications. J. Mol. Biol., 235, 1-12.
-
(1994)
J. Mol. Biol.
, vol.235
, pp. 1-12
-
-
Vingron, M.1
Waterman, M.S.2
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