메뉴 건너뛰기




Volumn 25, Issue 18, 2009, Pages 2302-2308

k-link EST clustering: Evaluating error introduced by chimeric sequences under different degrees of linkage

Author keywords

[No Author keywords available]

Indexed keywords

ALGORITHM; ARTICLE; CAENORHABDITIS ELEGANS; CHIMERA; CLUSTER ANALYSIS; CONTROLLED STUDY; EXPRESSED SEQUENCE TAG; LINKAGE ANALYSIS; PRIORITY JOURNAL; RICE; SENSITIVITY AND SPECIFICITY; SEQUENCE ANALYSIS; SEQUENCE HOMOLOGY; SORGHUM; SYSTEMATIC ERROR;

EID: 69849113659     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btp410     Document Type: Article
Times cited : (4)

References (25)
  • 1
    • 0344838601 scopus 로고    scopus 로고
    • Redundancy based detection of sequence polymorphisms in expressed sequence tag data using autoSNP
    • Barker,G. et al. (2003) Redundancy based detection of sequence polymorphisms in expressed sequence tag data using autoSNP. Bioinformatics, 19, 421-422.
    • (2003) Bioinformatics , vol.19 , pp. 421-422
    • Barker, G.1
  • 2
    • 0029355897 scopus 로고
    • Establishing a human transcript map
    • Boguski,M.S. and Schuler,G.D. (1995) Establishing a human transcript map. Nat. Genet., 10, 369-371.
    • (1995) Nat. Genet , vol.10 , pp. 369-371
    • Boguski, M.S.1    Schuler, G.D.2
  • 3
    • 0032703998 scopus 로고    scopus 로고
    • d2_cluster: A validated method for clustering EST and full-length cDNA sequences
    • Burke,J. et al. (1999) d2_cluster: A validated method for clustering EST and full-length cDNA sequences. Genome Res., 9 1135-1142.
    • (1999) Genome Res , vol.9 , pp. 1135-1142
    • Burke, J.1
  • 4
    • 46249096295 scopus 로고    scopus 로고
    • An overview of the wcd EST clustering tool
    • Hazelhurst,S. et al. (2008) An overview of the wcd EST clustering tool. Bioinformatics, 24, 1542-1546.
    • (2008) Bioinformatics , vol.24 , pp. 1542-1546
    • Hazelhurst, S.1
  • 5
    • 0028505328 scopus 로고
    • Biological evaluation of d2, an algorithm for high-performance sequence comparison
    • Hide,W. et al. (1994) Biological evaluation of d2, an algorithm for high-performance sequence comparison. J. Comput. Biol., 1 199-215.
    • (1994) J. Comput. Biol , vol.1 , pp. 199-215
    • Hide, W.1
  • 6
    • 16144364414 scopus 로고    scopus 로고
    • Generation and analysis of 280 000 human expressed sequence tag
    • Hillier,L.D. et al. (1996) Generation and analysis of 280 000 human expressed sequence tag. Genome Res., 6, 807-828.
    • (1996) Genome Res , vol.6 , pp. 807-828
    • Hillier, L.D.1
  • 7
    • 0032849859 scopus 로고    scopus 로고
    • CAP3: A DNA sequence assembly program
    • Huang,X. and Madan,A. (1999) CAP3: A DNA sequence assembly program. Genome Res., 9, 868-877.
    • (1999) Genome Res , vol.9 , pp. 868-877
    • Huang, X.1    Madan, A.2
  • 8
    • 0001368373 scopus 로고
    • Étude comparative de la distribution florale dans une portion des Alpes et des Jura.
    • Jaccard,P. (1901) Étude comparative de la distribution florale dans une portion des Alpes et des Jura. Bull. Soc. Vaudoise Sci. Nat, 37, 547-579.
    • (1901) Bull. Soc. Vaudoise Sci. Nat , vol.37 , pp. 547-579
    • Jaccard, P.1
  • 9
    • 0036226603 scopus 로고    scopus 로고
    • BLAT - the BLAST-like alignment tool
    • Kent,W.J. (2002) BLAT - the BLAST-like alignment tool. Genome Res. 12, 656-664.
    • (2002) Genome Res , vol.12 , pp. 656-664
    • Kent, W.J.1
  • 10
    • 0036079158 scopus 로고    scopus 로고
    • The human genome browser at UCSC
    • Kent,W.J. et al. (2002) The human genome browser at UCSC. Genome Res., 12, 996-1006.
    • (2002) Genome Res , vol.12 , pp. 996-1006
    • Kent, W.J.1
  • 11
    • 17844407888 scopus 로고    scopus 로고
    • ECgene: Genome-based EST clustering and gene modeling for alternative splicing
    • Kim,N. et al. (2005) ECgene: Genome-based EST clustering and gene modeling for alternative splicing. Genome Res., 15, 566-576.
    • (2005) Genome Res , vol.15 , pp. 566-576
    • Kim, N.1
  • 12
    • 34250255522 scopus 로고
    • Merging groups to maximize object partition comparison
    • Klastorin,T.D. (1980) Merging groups to maximize object partition comparison. Psychometrika, 45, 425-433.
    • (1980) Psychometrika , vol.45 , pp. 425-433
    • Klastorin, T.D.1
  • 14
    • 0001216741 scopus 로고
    • A representation for multinomial cumulative distribution functions
    • Levin,B. (1981) A representation for multinomial cumulative distribution functions. Ann. Stat., 9, 1123-1126.
    • (1981) Ann. Stat , vol.9 , pp. 1123-1126
    • Levin, B.1
  • 15
    • 33748700612 scopus 로고    scopus 로고
    • RBR: Library-less repeat detection for ESTs
    • Malde,K. et al. (2006) RBR: Library-less repeat detection for ESTs. Bioinformatics, 22, 2232-2236.
    • (2006) Bioinformatics , vol.22 , pp. 2232-2236
    • Malde, K.1
  • 16
    • 39849097136 scopus 로고    scopus 로고
    • Repeats and EST analysis for new organisms
    • Malde,K. and Jonassen,I. (2008) Repeats and EST analysis for new organisms. BMC Genomics, 9, 1471-2164.
    • (2008) BMC Genomics , vol.9 , pp. 1471-2164
    • Malde, K.1    Jonassen, I.2
  • 17
    • 33947156744 scopus 로고    scopus 로고
    • Comparing clusterings an information based distance
    • Meila,M. (2007) Comparing clusterings an information based distance. J. Multivar. Anal., 98, 873-895.
    • (2007) J. Multivar. Anal , vol.98 , pp. 873-895
    • Meila, M.1
  • 18
    • 58449137410 scopus 로고    scopus 로고
    • The Sorghum bicolor genome and the diversification of grasses
    • Patterson,A.H. et al. (2009) The Sorghum bicolor genome and the diversification of grasses. Nature, 457, 551-556.
    • (2009) Nature , vol.457 , pp. 551-556
    • Patterson, A.H.1
  • 19
    • 2942601538 scopus 로고    scopus 로고
    • Making sense of EST sequences by CLOBBing them
    • Parkinson,J. et al. (2002) Making sense of EST sequences by CLOBBing them. BMC Bioinformatics, 3, 31.
    • (2002) BMC Bioinformatics , vol.3 , pp. 31
    • Parkinson, J.1
  • 20
    • 0037460985 scopus 로고    scopus 로고
    • TIGR gene indices clustering tools (TGICL): A software system for fast clustering of large EST datasets
    • Pertea,G. et al. (2003) TIGR gene indices clustering tools (TGICL): A software system for fast clustering of large EST datasets. Bioinformatics, 19, 651-652.
    • (2003) Bioinformatics , vol.19 , pp. 651-652
    • Pertea, G.1
  • 21
    • 27644502871 scopus 로고    scopus 로고
    • CLU: A new algorithm for EST clustering
    • Ptitsyn,A. and Hide,W. (2005) CLU: A new algorithm for EST clustering. BMC Bioinformatics, 6 (Suppl. 2), S3.
    • (2005) BMC Bioinformatics , vol.6 , Issue.SUPPL. 2
    • Ptitsyn, A.1    Hide, W.2
  • 22
    • 0035165581 scopus 로고    scopus 로고
    • The TIGR gene indices: Analysis of gene transcript sequences in highly sampled eukaryotic species
    • Quackenbush,J. et al. (2001) The TIGR gene indices: Analysis of gene transcript sequences in highly sampled eukaryotic species. Nucleic Acids Res., 29, 159-164.
    • (2001) Nucleic Acids Res , vol.29 , pp. 159-164
    • Quackenbush, J.1
  • 23
    • 0037327027 scopus 로고    scopus 로고
    • A novel algorithm for computational identification of contaminated EST libraries
    • Sorek,R. and Safer,H. (2003) A novel algorithm for computational identification of contaminated EST libraries. Nucleic Acids Res., 31, 1067-1074.
    • (2003) Nucleic Acids Res , vol.31 , pp. 1067-1074
    • Sorek, R.1    Safer, H.2
  • 24
    • 33750305245 scopus 로고    scopus 로고
    • QualitySNP: A pipeline for detecting Single nucleotide polymorphisms and insertions/deletions in EST data from diploids and polyploidy species
    • Article
    • Tang,J.F. et al. (2006) QualitySNP: A pipeline for detecting Single nucleotide polymorphisms and insertions/deletions in EST data from diploids and polyploidy species. BMC Bioinformatics, 7, Article 438.
    • (2006) BMC Bioinformatics , vol.7 , pp. 438
    • Tang, J.F.1
  • 25
    • 10244224129 scopus 로고    scopus 로고
    • EST clustering error evaluation and correction
    • Wang,J.Z. et al. (2004) EST clustering error evaluation and correction. Bioinformatics, 20, 2973-2984.
    • (2004) Bioinformatics , vol.20 , pp. 2973-2984
    • Wang, J.Z.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.