Biclustering of Expression Data

Proceedings of the 8th International Conference on Intelligent Systems for Molecular Biology, ISMB 2000

Volumn , Issue , 2000, Pages 93-103

  Cheng, Yizong ^a,b   Church, George M ^a  

^a HARVARD MEDICAL SCHOOL   (United States)

^b University of Cincinnati   (United States)

Author keywords

clustering; gene expression pattern; microarray

Indexed keywords

ARTIFICIAL INTELLIGENCE;

BICLUSTERING; CLUSTERINGS; CO-REGULATION; CONDITION; EXPRESSION DATA; GENE EXPRESSION PATTERNS; NODE DELETION; REGULATION PATTERN; SUBMATRIX; TRADITIONAL CLUSTERING;

GENE EXPRESSION;

ALGORITHM; ANIMAL; ARTICLE; DNA MICROARRAY; GENE EXPRESSION PROFILING; HUMAN; METHODOLOGY; MULTIGENE FAMILY;

ALGORITHMS; ANIMALS; GENE EXPRESSION PROFILING; HUMANS; MULTIGENE FAMILY; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS;

EID: 0034566393     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: None     Document Type: Conference Paper

References (14)

1. Aach, J., Rindone, W., and Church, G. M. 2000. Systematic management and analysis of yeast gene expression data. Genome Research in press.
2. Alizadeh, A. A. et al. 2000. Distinct types of diffuse large B-cell lymphoma identified by gene expression profiling. Nature 403:503-510.
3. Ball, C. A. et al. 2000. Integrating functional genomic information into the Saccharomyces Genome Database. Nucleic Acids Res. 28:77-80.
4. Cho, R. J. et al. A genome wide transcriptional analysis of the mitotic cell cycle. Mol. Cell 2:65-73.
5. Garey, M. R., and Johnson, D. S. 1979. Computers and Intractability: A Guide to the Theory of NP-Completeness. San Francisco: Freeman.
6. Hartigan, J. A. 1972. Direct clustering of a data matrix. JASA 67:123-129.
7. Hartuv, E. et al. 1999. An algorithm for clustering cDNAs for gene expression analysis. RECOMB '99, 188-197.
8. Johnson, D. S. 1987. The NP-completeness column: an ongoing guide. J. Algorithms 8:438-448.
9. Mirkin, B. 1996. Mathematical Classification and Clustering. Dordrecht: Kluwer.
10. Morgan, J. N. and Sonquist, J. A. 1963. Problems in the analysis of survey data, and a proposal. JASA 58:415-434.
11. Nau, D. S., Markowsky, G., Woodbury, M. A., and Amos, D. B. 1978. A mathmatical analysis of human leukocyte antigen serology. Math. Biosci. 40:243-270.
12. Orlin, J. 1977. Containment in graph theory: covering graphs with cliques, Nederl. Akad. Wetensch. Indag. Math. 39:211-218.
13. Tavazoie, S., Hughes, J. D., Campbell, M. J., Cho, R. J., and Church, G. M. 1999. Systematic determination of genetic network architecture. Nature Genetics 22:281-285.
14. Yannakakis, M. 1981. Node deletion problems on bipartite graphs. SIAM J. Comput. 10:310-327.