-
1
-
-
0025879424
-
Complementary DNA sequencing: Expressed sequence tags and human genome project
-
Adams, M.D., J.M. Kelley, J.D. Gocayne, M. Dubnick, M.H. Polymeropoulos, H. Xiao, C.R. Merril, A. Wu, B. Olde, R.F. Moreno et al. 1991. Complementary DNA sequencing: Expressed sequence tags and human genome project. Science 252: 1651-1656.
-
(1991)
Science
, vol.252
, pp. 1651-1656
-
-
Adams, M.D.1
Kelley, J.M.2
Gocayne, J.D.3
Dubnick, M.4
Polymeropoulos, M.H.5
Xiao, H.6
Merril, C.R.7
Wu, A.8
Olde, B.9
Moreno, R.F.10
-
2
-
-
0026501942
-
Sequence identification of 2,375 human brain genes
-
Adams, M.D., M. Dubnick, A.R. Kerlavage, R. Moreno, J.M. Kelley, T.R. Utterback, J.W. Nagle, C. Fields, and J.C. Venter. 1992. Sequence identification of 2,375 human brain genes. Nature 355: 632-634.
-
(1992)
Nature
, vol.355
, pp. 632-634
-
-
Adams, M.D.1
Dubnick, M.2
Kerlavage, A.R.3
Moreno, R.4
Kelley, J.M.5
Utterback, T.R.6
Nagle, J.W.7
Fields, C.8
Venter, J.C.9
-
3
-
-
0029653613
-
Initial assessment of human gene diversity and expression patterns based upon 83 million nucleotides of cDNA sequence
-
Adams, M.D., A.R. Kerlavage, R.D. Fleischmann, R.A. Fuldner, C.J. Bult, N.H. Lee, E.F. Kirkness, K.G. Weinstock, J.D. Gocayne, O. White et al. 1995. Initial assessment of human gene diversity and expression patterns based upon 83 million nucleotides of cDNA sequence. Nature (Suppl.) 377: 3-17.
-
(1995)
Nature (Suppl.)
, vol.377
, pp. 3-17
-
-
Adams, M.D.1
Kerlavage, A.R.2
Fleischmann, R.D.3
Fuldner, R.A.4
Bult, C.J.5
Lee, N.H.6
Kirkness, E.F.7
Weinstock, K.G.8
Gocayne, J.D.9
White, O.10
-
5
-
-
0029355897
-
ESTablishing a human transcript map
-
Boguski, M.S. and G.D. Schuler. 1995. ESTablishing a human transcript map. Nat. Genet. 10: 369-371.
-
(1995)
Nat. Genet.
, vol.10
, pp. 369-371
-
-
Boguski, M.S.1
Schuler, G.D.2
-
6
-
-
0027249595
-
DbEST: Database for "expressed sequence tags"
-
Boguski, M.S., T.M. Lowe, and C.M. Tolstohev. 1993. DbEST: Database for "expressed sequence tags." Nat. Genet. 4: 332-333.
-
(1993)
Nat. Genet.
, vol.4
, pp. 332-333
-
-
Boguski, M.S.1
Lowe, T.M.2
Tolstohev, C.M.3
-
7
-
-
0031955117
-
Alternative gene form discovery and candidate gene selection from gene indexing projects
-
Burke, J.P., H. Wang, W. Hide, and D. Davison. 1998. Alternative gene form discovery and candidate gene selection from gene indexing projects. Genome Res. 8: 276-290.
-
(1998)
Genome Res.
, vol.8
, pp. 276-290
-
-
Burke, J.P.1
Wang, H.2
Hide, W.3
Davison, D.4
-
8
-
-
0033041612
-
CRAWview: For viewing splicing variation, gene families, and polymorphism in clusters of ESTs and full-length sequences
-
Chow, A. and J.P. Burke. 1999. CRAWview: For viewing splicing variation, gene families, and polymorphism in clusters of ESTs and full-length sequences. Bioinformatics 15:(5) 376-381.
-
(1999)
Bioinformatics
, vol.15
, Issue.5
, pp. 376-381
-
-
Chow, A.1
Burke, J.P.2
-
9
-
-
0031877015
-
The Merck Gene Index Browser: An extensible data integration system for gene finding, gene characterization and EST data mining
-
Eckman, B.A., J.S. Aaronson, J.A. Borkowski, W.J. Bailey, K.O. Elliston, A.R. Williamson, and R.A. Blevins. 1998. The Merck Gene Index Browser: An extensible data integration system for gene finding, gene characterization and EST data mining. Bioinformatics 14: 2-13.
-
(1998)
Bioinformatics
, vol.14
, pp. 2-13
-
-
Eckman, B.A.1
Aaronson, J.S.2
Borkowski, J.A.3
Bailey, W.J.4
Elliston, K.O.5
Williamson, A.R.6
Blevins, R.A.7
-
10
-
-
0031859991
-
Alternative polyadenylation in human mRNAs: A large-scale analysis by EST clustering
-
Gautheret, D., O. Poirot, F. Lopez, S. Audic, and J.M. Claverie. 1998. Alternative polyadenylation in human mRNAs: A large-scale analysis by EST clustering. Genome Res. 8: 524-530.
-
(1998)
Genome Res.
, vol.8
, pp. 524-530
-
-
Gautheret, D.1
Poirot, O.2
Lopez, F.3
Audic, S.4
Claverie, J.M.5
-
11
-
-
0030774723
-
A new dynamic tool to perform assembly of expressed sequence tages (ESTs)
-
Gill, R.W., T.C. Hodgman, C.B. Littler, M.D. Oxer, D.S. Montgomery, S. Taylor, and P. Sanseau 1997. A new dynamic tool to perform assembly of expressed sequence tages (ESTs). Comput. Appl. Biosci. 13: 453-457.
-
(1997)
Comput. Appl. Biosci.
, vol.13
, pp. 453-457
-
-
Gill, R.W.1
Hodgman, T.C.2
Littler, C.B.3
Oxer, M.D.4
Montgomery, D.S.5
Taylor, S.6
Sanseau, P.7
-
12
-
-
0031876699
-
Automated protein sequence database classification. I. Integration of compositional similarity search, local similarity search, and multiple sequence alignment
-
Gracy, J. and P. Argos. 1998a. Automated protein sequence database classification. I. Integration of compositional similarity search, local similarity search, and multiple sequence alignment. Bioinformatics 14:(2) 164-173.
-
(1998)
Bioinformatics
, vol.14
, Issue.2
, pp. 164-173
-
-
Gracy, J.1
Argos, P.2
-
13
-
-
0031857779
-
Automated protein sequence database classification. II. Delineation of domain boundaries from sequence similarities
-
_. 1998b. Automated protein sequence database classification. II. Delineation of domain boundaries from sequence similarities. Bioinformatics 14:(2) 174-187.
-
(1998)
Bioinformatics
, vol.14
, Issue.2
, pp. 174-187
-
-
-
14
-
-
0029868410
-
CLEANUP: A fast computer program for removing redundancies from nucleotide sequence databases
-
Grillo, G., M. Attimonelli, S. Liuini, and G. Pesole. 1996. CLEANUP: A fast computer program for removing redundancies from nucleotide sequence databases. Comp. Appl. Biosci. 12: 1-8.
-
(1996)
Comp. Appl. Biosci.
, vol.12
, pp. 1-8
-
-
Grillo, G.1
Attimonelli, M.2
Liuini, S.3
Pesole, G.4
-
15
-
-
0028505328
-
Biological evaluation of d2, an algorithm for high-performance sequence comparison
-
Hide, W., J. Burke, and D. Davison. 1994. Biological evaluation of d2, an algorithm for high-performance sequence comparison. J. Comp. Biol. 1: 199-215.
-
(1994)
J. Comp. Biol.
, vol.1
, pp. 199-215
-
-
Hide, W.1
Burke, J.2
Davison, D.3
-
16
-
-
0003144750
-
A novel approach towards a comprehensive consensus representation of the expressed human genome
-
(ed. S. Miyano and T. Takagi). Universal Academy Press Inc., Tokyo, Japan
-
Hide, W., J. Burke, A. Christoffels, and R. Miller. 1997. A novel approach towards a comprehensive consensus representation of the expressed human genome. In Genome informatics 1997 (ed. S. Miyano and T. Takagi), pp. 187-196. Universal Academy Press Inc., Tokyo, Japan.
-
(1997)
Genome Informatics 1997
, pp. 187-196
-
-
Hide, W.1
Burke, J.2
Christoffels, A.3
Miller, R.4
-
17
-
-
0028970844
-
The GenExpress Index: A resource for gene discovery and the genic map of the human genome
-
Houlgatte, R., R. Mariage-Samson, S. Duprat, A. Tesslier, S. Bentolila, B. Lamy, and C. Auffray. 1995. The GenExpress Index: A resource for gene discovery and the genic map of the human genome. Genome Res. 5: 272-304.
-
(1995)
Genome Res.
, vol.5
, pp. 272-304
-
-
Houlgatte, R.1
Mariage-Samson, R.2
Duprat, S.3
Tesslier, A.4
Bentolila, S.5
Lamy, B.6
Auffray, C.7
-
18
-
-
0029416826
-
An STS-based map of the human genome
-
Hudson, T.J., E.D. Stein, S.S. Gerety, J. Ma, A.B. Castle, J. Silva, D.K. Slonim, R. Baptista, L. Kruglyak, S. Xu et al. 1995. An STS-based map of the human genome. Science 270: 1945-1954.
-
(1995)
Science
, vol.270
, pp. 1945-1954
-
-
Hudson, T.J.1
Stein, E.D.2
Gerety, S.S.3
Ma, J.4
Castle, A.B.5
Silva, J.6
Slonim, D.K.7
Baptista, R.8
Kruglyak, L.9
Xu, S.10
-
20
-
-
0027133513
-
Identification of new genes by systematic analysis of cDNAs and database construction
-
Matsubara, K. and K. Okubo. 1993. Identification of new genes by systematic analysis of cDNAs and database construction. Curr. Opin. Biotech. 4: 672-677.
-
(1993)
Curr. Opin. Biotech.
, vol.4
, pp. 672-677
-
-
Matsubara, K.1
Okubo, K.2
-
21
-
-
0032727821
-
A comprehensive approach to determination of expressed human gene sequence: The sequence tag alignment and consensus knowledge base
-
this issue
-
Miller, R.T., A.G. Christoffels, J. Burke, B.R. Karlak, A.A. Ptitsyn, T.R. Broveak, and W.A. Hide. 1999. A comprehensive approach to determination of expressed human gene sequence: The sequence tag alignment and consensus knowledge base. Genome Res. (this issue).
-
(1999)
Genome Res.
-
-
Miller, R.T.1
Christoffels, A.G.2
Burke, J.3
Karlak, B.R.4
Ptitsyn, A.A.5
Broveak, T.R.6
Hide, W.A.7
-
22
-
-
0026301763
-
A novel system for large-scale sequencing of cDNA by PCR amplification
-
Okubo, K., H. Hori, R. Matuba, T. Niiyama, and K. Matsubara. 1991. A novel system for large-scale sequencing of cDNA by PCR amplification. DNA Seq. 2: 137-144.
-
(1991)
DNA Seq.
, vol.2
, pp. 137-144
-
-
Okubo, K.1
Hori, H.2
Matuba, R.3
Niiyama, T.4
Matsubara, K.5
-
23
-
-
0026947554
-
Large-scale cDNA sequencing analysis of quantitative and qualitative aspects of gene expression
-
Okubo, K., H. Hori, R. Matuba, T. Niiyama, A. Fukushima, Y. Kiojima, and K. Matsubara. 1992. Large-scale cDNA sequencing analysis of quantitative and qualitative aspects of gene expression. Nat. Genet. 2: 173-179.
-
(1992)
Nat. Genet.
, vol.2
, pp. 173-179
-
-
Okubo, K.1
Hori, H.2
Matuba, R.3
Niiyama, T.4
Fukushima, A.5
Kiojima, Y.6
Matsubara, K.7
-
24
-
-
0028686188
-
An expression profile of active genes in human colonic mucosa
-
Okubo, K., J. Yoshii, H. Yokouchi, M. Kameyama, and K. Matsubara. 1994. An expression profile of active genes in human colonic mucosa. DNA Res. 1: 37-45.
-
(1994)
DNA Res.
, vol.1
, pp. 37-45
-
-
Okubo, K.1
Yoshii, J.2
Yokouchi, H.3
Kameyama, M.4
Matsubara, K.5
-
25
-
-
0029565637
-
Improved tools for DNA comparison and clustering
-
Parsons, J.D. 1995. Improved tools for DNA comparison and clustering. Comp. Appl. Biosci. 11: 603-613.
-
(1995)
Comp. Appl. Biosci.
, vol.11
, pp. 603-613
-
-
Parsons, J.D.1
-
27
-
-
0345291183
-
The Genexpress IMAGE knowledge base of the human brain transcriptome: A prototype integrated resource for functional and computational genomics
-
Pietu, G., R. Mariage-Samsom, N.A. Fayein, C. Matingou, E. Evenco, R. Houlgatte, C. Decraene, Y. Vandenbrouck, F. Tahi, M. Devegnes et al. 1999. The Genexpress IMAGE knowledge base of the human brain transcriptome: A prototype integrated resource for functional and computational genomics. Genome Res. 9(2): 195-209.
-
(1999)
Genome Res.
, vol.9
, Issue.2
, pp. 195-209
-
-
Pietu, G.1
Mariage-Samsom, R.2
Fayein, N.A.3
Matingou, C.4
Evenco, E.5
Houlgatte, R.6
Decraene, C.7
Vandenbrouck, Y.8
Tahi, F.9
Devegnes, M.10
-
28
-
-
10244230901
-
A gene map of the human genome
-
Schuler, G.D., M.S. Boguski, E.A. Stewart, L.D. Stein, G. Gyapay, K. Rice, R.E. White, P. Rodriguez-Tome, A. Aggarwal, E. Bajorek et al. 1996. A gene map of the human genome. Science 274: 540-546.
-
(1996)
Science
, vol.274
, pp. 540-546
-
-
Schuler, G.D.1
Boguski, M.S.2
Stewart, E.A.3
Stein, L.D.4
Gyapay, G.5
Rice, K.6
White, R.E.7
Rodriguez-Tome, P.8
Aggarwal, A.9
Bajorek, E.10
-
29
-
-
0028218683
-
Modular arrangement of proteins as inferred from analysis of homology
-
Sonnhammer, E.L.L. and D. Kahn. 1994. Modular arrangement of proteins as inferred from analysis of homology. Protein Sci. 3: 482-492.
-
(1994)
Protein Sci.
, vol.3
, pp. 482-492
-
-
Sonnhammer, E.L.L.1
Kahn, D.2
-
30
-
-
0030925920
-
Pfam: A comprehensive database of protein families based on seed alignments
-
Sonnhammer, E.L.L., S.R. Eddy, and R. Durbin. 1997. Pfam: A comprehensive database of protein families based on seed alignments. Proteins 28: 405-420.
-
(1997)
Proteins
, vol.28
, pp. 405-420
-
-
Sonnhammer, E.L.L.1
Eddy, S.R.2
Durbin, R.3
-
31
-
-
0001899550
-
TIGR assembler: A new tool for assembling large shotgun sequencing projects
-
Sutton, G., O. White, M.D. Adams, and A.R. Kerlavage. 1995. TIGR assembler: A new tool for assembling large shotgun sequencing projects. Genome Sci. Technol. 1: 9-18.
-
(1995)
Genome Sci. Technol.
, vol.1
, pp. 9-18
-
-
Sutton, G.1
White, O.2
Adams, M.D.3
Kerlavage, A.R.4
-
32
-
-
0000977008
-
-
(ed. G. Bell and T. Marr), Addison-Wesley, New York, NY
-
Torney, D.C., C. Burkes, D. Davidson, and K.M. Sirkin. 1990. Computation of d2: A measure of sequence dissimilarity, computers and DNA, SFI studies in the sciences of complexity (ed. G. Bell and T. Marr), vol. VII. Addison-Wesley, New York, NY.
-
(1990)
Computation of d2: A Measure of Sequence Dissimilarity, Computers and DNA, SFI Studies in the Sciences of Complexity
, vol.7
-
-
Torney, D.C.1
Burkes, C.2
Davidson, D.3
Sirkin, K.M.4
-
33
-
-
0031938775
-
Discovery of three genes specifically expressed in human prostate by expressed sequence tag database analysis
-
Vasmatzis, G., M. Essand, U. Brinkmann, B. Lee, and I. Pastan. 1998. Discovery of three genes specifically expressed in human prostate by expressed sequence tag database analysis. Proc. Natl. Acad. Sci. 95:(1) 300-304.
-
(1998)
Proc. Natl. Acad. Sci.
, vol.95
, Issue.1
, pp. 300-304
-
-
Vasmatzis, G.1
Essand, M.2
Brinkmann, U.3
Lee, B.4
Pastan, I.5
-
34
-
-
0027278065
-
Identification of new human receptor and transporter genes by high throughput cDNA (EST) sequencing
-
Venter, J.C. 1993. Identification of new human receptor and transporter genes by high throughput cDNA (EST) sequencing. J. Pharm. Pharmacol. (Suppl. 1) 45: 355-360.
-
(1993)
J. Pharm. Pharmacol. (Suppl. 1)
, vol.45
, pp. 355-360
-
-
Venter, J.C.1
-
35
-
-
0029991653
-
TDB: New databases for biological discovery
-
White, O. and A.R. Kerlavage. 1996. TDB: New databases for biological discovery. Methods Enzymol. 206: 27-41.
-
(1996)
Methods Enzymol.
, vol.206
, pp. 27-41
-
-
White, O.1
Kerlavage, A.R.2
-
36
-
-
0025796584
-
Use of 3' untranslated sequences of human cDNAs for rapid chromosomal assignment and conversion to STSs: Inplications for an expression map of the genome
-
Wilcox, A.S., A.S. Khan, J.A. Hopkins, and J.M. Sikela. 1991. Use of 3' untranslated sequences of human cDNAs for rapid chromosomal assignment and conversion to STSs: Inplications for an expression map of the genome. Nucleic Acids Res. 19: 1837-1843.
-
(1991)
Nucleic Acids Res.
, vol.19
, pp. 1837-1843
-
-
Wilcox, A.S.1
Khan, A.S.2
Hopkins, J.A.3
Sikela, J.M.4
-
37
-
-
0028835212
-
BEAUTY: An enhanced BLAST-based search tool that integrates multiple biological information resources into sequence similarity results
-
Worley, K.C., B.A. Wiese, and R. Smith. 1995. BEAUTY: An enhanced BLAST-based search tool that integrates multiple biological information resources into sequence similarity results. Genome Res. 5: 173-184.
-
(1995)
Genome Res.
, vol.5
, pp. 173-184
-
-
Worley, K.C.1
Wiese, B.A.2
Smith, R.3
-
38
-
-
0031437248
-
A measure of DNA sequence dissimilarity based on mahalanobis distance between frequencies of words
-
Wu, T.J., J.P. Burke, and D.B. Davison. 1997. A measure of DNA sequence dissimilarity based on mahalanobis distance between frequencies of words. Biometrics 53: 1431-1439.
-
(1997)
Biometrics
, vol.53
, pp. 1431-1439
-
-
Wu, T.J.1
Burke, J.P.2
Davison, D.B.3
-
39
-
-
0031602693
-
Automated clustering and assembly of large EST collections
-
Yee, D.P. and D. Conklin. 1998. Automated clustering and assembly of large EST collections. Intell. Syst. Mol. Biol. 6: 203-211.
-
(1998)
Intell. Syst. Mol. Biol.
, vol.6
, pp. 203-211
-
-
Yee, D.P.1
Conklin, D.2
|