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Volumn 12, Issue 2, 1996, Pages 95-107

Hidden markov models for sequence analysis: Extension and analysis of the basic method

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACID; NUCLEOTIDE;

EID: 0029887381     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/12.2.95     Document Type: Article
Times cited : (376)

References (21)
  • 1
    • 0028071564 scopus 로고
    • The SWISS-PROT protein sequence data bank: Current status
    • Bairoch.A. and Boeckmann, B. (1994) The SWISS-PROT protein sequence data bank: current status. Nucleic Acids Res., 22, 3578—3580.
    • (1994) Nucleic Acids Res , vol.22 , pp. 3578-3580
    • Bairoch, A.1    Boeckmann, B.2
  • 5
    • 0028685354 scopus 로고
    • A generalized profile syntax for biomolecular sequence motifs and its function in automatic sequence interpretation
    • AAAI/MIT Press, Stanford, CA, pp
    • Bucher.P. and Bairoch, A. (1994) A generalized profile syntax for biomolecular sequence motifs and its function in automatic sequence interpretation. In Proc. Int. Conference on Intelligent Systems for Molecular Biology. AAAI/MIT Press, Stanford, CA, pp. 53-61.
    • (1994) Proc. Int. Conference on Intelligent Systems for Molecular Biology , pp. 53-61
    • Bucher, P.1    Bairoch, A.2
  • 7
    • 0029259085 scopus 로고
    • Maximum discrimination hidden Markov models for sequence consensus
    • Eddy.S., Mitchison, G. and Durbin, R. (1995) Maximum discrimination hidden Markov models for sequence consensus. J. Comput. Bioi, 2, 9-23
    • (1995) J. Comput. Bioi , vol.2 , pp. 9-23
    • Eddy, S.1    Mitchison, G.2    Durbin, R.3
  • 10
    • 84968924443 scopus 로고
    • Protein modeling using hidden Markov models: Analysis of globins
    • IEEE Computer Society Press, Los Alamitos, CA, Vol., pp
    • Haussler.D., Krogh.A., Mian.I.S. and Sjolander.K. (1993) Protein modeling using hidden Markov models: Analysis of globins. In Proc. Hawaii International Conference on Systems Science. IEEE Computer Society Press, Los Alamitos, CA, Vol. 1, pp. 792-802.
    • (1993) Proc. Hawaii International Conference on Systems Science , vol.1 , pp. 792-802
    • Haussler, D.1    Krogh, A.2    Mian, I.S.3    Sjolander, K.4
  • 11
    • 0004121963 scopus 로고
    • Regularizers for estimating distributions of amino acids from small samples
    • AAAI/MIT Press, Menlo Park, CA. Full version available as UCSC Technical Report UCSC-CRL-95-11
    • Karplus, K. (1995) Regularizers for estimating distributions of amino acids from small samples. In Proc. Third Int. Conference on Intelligent Systems for Molecular Biology. AAAI/MIT Press, Menlo Park, CA. Full version available as UCSC Technical Report UCSC-CRL-95-11
    • (1995) Proc. Third Int. Conference on Intelligent Systems for Molecular Biology
    • Karplus, K.1
  • 12
    • 26444479778 scopus 로고
    • Optimization by simulated annealing
    • Kirkpatrick.S., Jr and Vecchi, M. (1983) Optimization by simulated annealing. Science, 220.
    • (1983) Science , vol.220
    • Kirkpatrick, S.1    Vecchi, M.2
  • 14
    • 0028181441 scopus 로고
    • Hidden Markov models in computational biology: Applications to protein modeling
    • Krogh.A., Brown, M., Mian.I.S., Sjolander, K. and Haussler.D. (1994a) Hidden Markov models in computational biology: applications to protein modeling. J. Mol. Biol., 235, 1501-1531.
    • (1994) J. Mol. Biol. , vol.235 , pp. 1501-1531
    • Krogh, A.1    Brown, M.2    Mian, I.S.3    Sjolander, K.4    Haussler, D.5
  • 15
    • 0027944605 scopus 로고
    • A hidden Markov model that finds genes in E. Coli DNA
    • Krogh.A., Mian, I.S. and Haussler.D. (1994b) A hidden Markov model that finds genes in E. coli DNA. Nucleic Acids Res., 22, 4768-4778.
    • (1994) Nucleic Acids Res , vol.22 , pp. 4768-4778
    • Krogh, A.1    Mian, I.S.2    Haussler, D.3
  • 17
    • 0025320805 scopus 로고
    • An expectation maximization (EM) algorithm for the identification and characterization of common sites in unaligned biopolymer sequences
    • Lawrence.C. and Reilly.A. (1990) An expectation maximization (EM) algorithm for the identification and characterization of common sites in unaligned biopolymer sequences. Proteins, 7, 41-51.
    • (1990) Proteins , vol.7 , pp. 41-51
    • Lawrence, C.1    Reilly, A.2
  • 18
    • 0027912333 scopus 로고
    • Detectable subtle sequence signals: A Gibbs sampling strategy for multiple alignment
    • Lawrence.C., Altschul.S., Boguski.M., Liu.J., Neuwald.A. and Woot-ton.J. (1993) Detectable subtle sequence signals: a Gibbs sampling strategy for multiple alignment. Science, 262, 208-214.
    • (1993) Science , vol.262 , pp. 208-214
    • Lawrence, C.1    Altschul, S.2    Boguski, M.3    Liu, J.4    Neuwald, A.5    Woot-Ton, J.6
  • 19
    • 0025677017 scopus 로고
    • The design of the Maspar MP-1: A cost effective massively parallel computer
    • IEEE Computer Society, Los Alamitos, CA, pp
    • Nickolls, J.R. (1990) The design of the Maspar MP-1: a cost effective massively parallel computer. In Proc. COMPCON Spring 1990. IEEE Computer Society, Los Alamitos, CA, pp. 25-28.
    • (1990) Proc. COMPCON Spring , vol.1990 , pp. 25-28
    • Nickolls, J.R.1
  • 20
    • 0024610919 scopus 로고
    • A tutorial on hidden Markov models and selected applications in speech recognition
    • Rabiner, L.R. (1989) A tutorial on hidden Markov models and selected applications in speech recognition. Proc. IEEE, 77, 257-286.
    • (1989) Proc. IEEE , vol.77 , pp. 257-286
    • Rabiner, L.R.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.