-
1
-
-
57649100762
-
Metabolic engineering for plant natural product biosynthesis in microbes
-
Chemler JA, Koffas MA (2008) Metabolic engineering for plant natural product biosynthesis in microbes. Curr Opin Biotechnol 19(6):597-605.
-
(2008)
Curr Opin Biotechnol
, vol.19
, Issue.6
, pp. 597-605
-
-
Chemler, J.A.1
Koffas, M.A.2
-
2
-
-
40449119329
-
Metabolic engineering delivers next-generation biofuels
-
Keasling JD, Chou H (2008) Metabolic engineering delivers next-generation biofuels. Nat Biotechnol 26(3):298-299.
-
(2008)
Nat Biotechnol
, vol.26
, Issue.3
, pp. 298-299
-
-
Keasling, J.D.1
Chou, H.2
-
3
-
-
65349184006
-
Opportunities in metabolic engineering to facilitate scalable alkaloid production
-
Leonard E, Runguphan W, O'Connor S, Prather KJ (2009) Opportunities in metabolic engineering to facilitate scalable alkaloid production. Nat Chem Biol 5(5):292-300.
-
(2009)
Nat Chem Biol
, vol.5
, Issue.5
, pp. 292-300
-
-
Leonard, E.1
Runguphan, W.2
O'Connor, S.3
Prather, K.J.4
-
4
-
-
57049185719
-
Engineering natural products using combinatorial biosynthesis and biocatalysis
-
Zhou H, Xie X, Tang Y (2008) Engineering natural products using combinatorial biosynthesis and biocatalysis. Curr Opin Biotechnol 19(6):590-596.
-
(2008)
Curr Opin Biotechnol
, vol.19
, Issue.6
, pp. 590-596
-
-
Zhou, H.1
Xie, X.2
Tang, Y.3
-
5
-
-
55649091668
-
Engineering microbes with synthetic biology frameworks
-
Leonard E, Nielsen D, Solomon K, Prather KJ (2008) Engineering microbes with synthetic biology frameworks. Trends Biotechnol 26(12):674-681.
-
(2008)
Trends Biotechnol
, vol.26
, Issue.12
, pp. 674-681
-
-
Leonard, E.1
Nielsen, D.2
Solomon, K.3
Prather, K.J.4
-
6
-
-
33847073370
-
Expanding the metabolic engineering toolbox: More options to engineer cells
-
Tyo KE, Alper HS, Stephanopoulos GN (2007) Expanding the metabolic engineering toolbox: more options to engineer cells. Trends Biotechnol 25(3):132-137.
-
(2007)
Trends Biotechnol
, vol.25
, Issue.3
, pp. 132-137
-
-
Tyo, K.E.1
Alper, H.S.2
Stephanopoulos, G.N.3
-
7
-
-
42549093749
-
Terpenoids: Opportunities for biosynthesis of natural product drugs using engineered microorganisms
-
Ajikumar PK, et al. (2008) Terpenoids: Opportunities for biosynthesis of natural product drugs using engineered microorganisms. Mol Pharm 5(2):167-190.
-
(2008)
Mol Pharm
, vol.5
, Issue.2
, pp. 167-190
-
-
Ajikumar, P.K.1
-
8
-
-
34250785114
-
The function of terpene natural products in the natural world
-
Gershenzon J, Dudareva N (2007) The function of terpene natural products in the natural world. Nat Chem Biol 3(7):408-414.
-
(2007)
Nat Chem Biol
, vol.3
, Issue.7
, pp. 408-414
-
-
Gershenzon, J.1
Dudareva, N.2
-
9
-
-
67651030513
-
Biosynthesis of plant isoprenoids: Perspectives formicrobial engineering
-
Kirby J, Keasling JD (2009) Biosynthesis of plant isoprenoids: perspectives formicrobial engineering. Annu Rev Plant Biol 60:335-355.
-
(2009)
Annu Rev Plant Biol
, vol.60
, pp. 335-355
-
-
Kirby, J.1
Keasling, J.D.2
-
10
-
-
70449336249
-
Engineering a platform for photosynthetic isoprene production in cyanobacteria, using Synechocystis as the model organism
-
Lindberg P, Park S, Melis A (2009) Engineering a platform for photosynthetic isoprene production in cyanobacteria, using Synechocystis as the model organism. Metab Eng 12(1):70-79.
-
(2009)
Metab Eng
, vol.12
, Issue.1
, pp. 70-79
-
-
Lindberg, P.1
Park, S.2
Melis, A.3
-
11
-
-
53049083876
-
Metabolic engineering for advanced biofuels production from Escherichia coli
-
Atsumi S, Liao JC (2008) Metabolic engineering for advanced biofuels production from Escherichia coli. Curr Opin Biotech 19(5):414-419.
-
(2008)
Curr Opin Biotech
, vol.19
, Issue.5
, pp. 414-419
-
-
Atsumi, S.1
Liao, J.C.2
-
12
-
-
43549105634
-
Terpenoid biomaterials
-
Bohlmann J, Keeling CI (2008) Terpenoid biomaterials. Plant J 54(4):656-669.
-
(2008)
Plant J
, vol.54
, Issue.4
, pp. 656-669
-
-
Bohlmann, J.1
Keeling, C.I.2
-
13
-
-
22844452835
-
Construction of lycopene-overproducing E. colistrains by combining systematic and combinatorial gene knockout targets
-
Alper H, Miyaoku K, Stephanopoulos G (2005) Construction of lycopene-overproducing E. colistrains by combining systematic and combinatorial gene knockout targets. Nat Biotechnol 23(5):612-616.
-
(2005)
Nat Biotechnol
, vol.23
, Issue.5
, pp. 612-616
-
-
Alper, H.1
Miyaoku, K.2
Stephanopoulos, G.3
-
14
-
-
70449592325
-
Enhancing sesquiterpene production in Saccharomyces cerevisiae through in silico driven metabolic engineering
-
Asadollahi MA, et al. (2009) Enhancing sesquiterpene production in Saccharomyces cerevisiae through in silico driven metabolic engineering. Metab Eng 11(6):328-334.
-
(2009)
Metab Eng
, vol.11
, Issue.6
, pp. 328-334
-
-
Asadollahi, M.A.1
-
15
-
-
33645870422
-
Production of the antimalarial drug precursor artemisinic acid in engineered yeast
-
Ro DK, et al. (2006) Production of the antimalarial drug precursor artemisinic acid in engineered yeast. Nature 440(7086):940-943.
-
(2006)
Nature
, vol.440
, Issue.7086
, pp. 940-943
-
-
Ro, D.K.1
-
16
-
-
33646157726
-
Terpene synthases and the regulation, diversity and biological roles of terpene metabolism
-
Tholl D (2006) Terpene synthases and the regulation, diversity and biological roles of terpene metabolism. Curr Opin Plant Biol 9(3):297-304.
-
(2006)
Curr Opin Plant Biol
, vol.9
, Issue.3
, pp. 297-304
-
-
Tholl, D.1
-
17
-
-
33646674456
-
Genes, enzymes, and chemicals of terpenoid diversity in the constitutive and induced defence of conifers against insects and pathogens
-
Keeling CI, Bohlmann J (2006) Genes, enzymes, and chemicals of terpenoid diversity in the constitutive and induced defence of conifers against insects and pathogens. New Phytol 170(4):657-675.
-
(2006)
New Phytol
, vol.170
, Issue.4
, pp. 657-675
-
-
Keeling, C.I.1
Bohlmann, J.2
-
18
-
-
43049107992
-
Unearthing the roots of the terpenome
-
Christianson DW (2008) Unearthing the roots of the terpenome. Curr Opin Chem Biol 12(2):141-150.
-
(2008)
Curr Opin Chem Biol
, vol.12
, Issue.2
, pp. 141-150
-
-
Christianson, D.W.1
-
19
-
-
66649087385
-
Timing and biosynthetic potential for carotenoid accumulation in genetically diverse germplasm of maize
-
Vallabhaneni R, Wurtzel ET (2009) Timing and biosynthetic potential for carotenoid accumulation in genetically diverse germplasm of maize. Plant Physiol 150(2):562-572.
-
(2009)
Plant Physiol
, vol.150
, Issue.2
, pp. 562-572
-
-
Vallabhaneni, R.1
Wurtzel, E.T.2
-
20
-
-
4444324207
-
Functional characterization ofnine Norway Spruce TPS genes and evolution of gymnosperm terpene synthases of the TPS-d subfamily
-
Martin DM, Faldt J, Bohlmann J (2004) Functional characterization ofnine Norway Spruce TPS genes and evolution of gymnosperm terpene synthases of the TPS-d subfamily. Plant Physiol 135(4):1908-1927.
-
(2004)
Plant Physiol
, vol.135
, Issue.4
, pp. 1908-1927
-
-
Martin, D.M.1
Faldt, J.2
Bohlmann, J.3
-
21
-
-
13844256481
-
Genomic hardwiring and phenotypic plasticity of terpenoid-based defenses in conifers
-
Huber DPW, Ralph S, Bohlmann J (2004) Genomic hardwiring and phenotypic plasticity of terpenoid-based defenses in conifers. J Chem Ecol 30(12):2399-2418.
-
(2004)
J Chem Ecol
, vol.30
, Issue.12
, pp. 2399-2418
-
-
Huber, D.P.W.1
Ralph, S.2
Bohlmann, J.3
-
22
-
-
59849106371
-
Protein promiscuity and its implications for biotechnology
-
Nobeli I, Favia AD, Thornton JM (2009) Protein promiscuity and its implications for biotechnology. Nat Biotechnol 27(2):157-167.
-
(2009)
Nat Biotechnol
, vol.27
, Issue.2
, pp. 157-167
-
-
Nobeli, I.1
Favia, A.D.2
Thornton, J.M.3
-
23
-
-
0038391517
-
Engineering a mevalonate pathway in Escherichia colifor production of terpenoids
-
Martin VJ, Pitera DJ, Withers ST, Newman JD, Keasling JD (2003) Engineering a mevalonate pathway in Escherichia colifor production of terpenoids. Nat Biotechnol 21(7):796-802.
-
(2003)
Nat Biotechnol
, vol.21
, Issue.7
, pp. 796-802
-
-
Martin, V.J.1
Pitera, D.J.2
Withers, S.T.3
Newman, J.D.4
Keasling, J.D.5
-
24
-
-
33847309176
-
Balancing a heterologous mevalonate pathway for improved isoprenoid production in Escherichia coli
-
Pitera DJ, Paddon CJ, Newman JD, Keasling JD (2007) Balancing a heterologous mevalonate pathway for improved isoprenoid production in Escherichia coli. Metab Eng 9(2):193-207.
-
(2007)
Metab Eng
, vol.9
, Issue.2
, pp. 193-207
-
-
Pitera, D.J.1
Paddon, C.J.2
Newman, J.D.3
Keasling, J.D.4
-
25
-
-
48649091326
-
Activation of platelet-activating factor receptor and pleiotropic effects on tyrosine phospho-EGFR/Src/FAK/paxillin in ovarian cancer
-
Aponte M, et al. (2008) Activation of platelet-activating factor receptor and pleiotropic effects on tyrosine phospho-EGFR/Src/FAK/paxillin in ovarian cancer. Cancer Res 68(14):5839-5848.
-
(2008)
Cancer Res
, vol.68
, Issue.14
, pp. 5839-5848
-
-
Aponte, M.1
-
26
-
-
42549128698
-
Structure-activity analysis of ginkgolide binding in the glycine receptor pore
-
Heads JA, Hawthorne RL, Lynagh T, Lynch JW (2008) Structure-activity analysis of ginkgolide binding in the glycine receptor pore. J Neurochem 105(4):1418-1427.
-
(2008)
J Neurochem
, vol.105
, Issue.4
, pp. 1418-1427
-
-
Heads, J.A.1
Hawthorne, R.L.2
Lynagh, T.3
Lynch, J.W.4
-
27
-
-
1542677090
-
Terpene trilactones from Ginkgo biloba are antagonists of cortical glycine and GABA(A) receptors
-
Ivic L, et al. (2003) Terpene trilactones from Ginkgo biloba are antagonists of cortical glycine and GABA(A) receptors. J Biol Chem 278(49):49279-49285.
-
(2003)
J Biol Chem
, vol.278
, Issue.49
, pp. 49279-49285
-
-
Ivic, L.1
-
28
-
-
34147163430
-
Probing the pharmacophore of ginkgolides as glycine receptor antagonists
-
Jensen AA, et al. (2007) Probing the pharmacophore of ginkgolides as glycine receptor antagonists. J Med Chem 50(7):1610-1617.
-
(2007)
J Med Chem
, vol.50
, Issue.7
, pp. 1610-1617
-
-
Jensen, A.A.1
-
29
-
-
0034687757
-
Abietadiene synthase from grand fir (Abies grandis): Characterization and mechanism of action of the "pseudomature" recombinant enzyme
-
Peters RJ, et al. (2000) Abietadiene synthase from grand fir (Abies grandis): characterization and mechanism of action of the " pseudomature" recombinant enzyme. Biochemistry 39(50):15592-15602.
-
(2000)
Biochemistry
, vol.39
, Issue.50
, pp. 15592-15602
-
-
Peters, R.J.1
-
30
-
-
0034624597
-
Stereochemistry of the cyclization-rearrangement of (+)-copalyl diphosphate to (-)-abietadiene catalyzed by recombinant abietadiene synthase from Abies grandis
-
Ravn MM, Coates RM, Flory JE, Peters RJ, Croteau R (2000) Stereochemistry of the cyclization-rearrangement of (+)-copalyl diphosphate to (-)-abietadiene catalyzed by recombinant abietadiene synthase from Abies grandis. Org Lett 2(5):573-576.
-
(2000)
Org Lett
, vol.2
, Issue.5
, pp. 573-576
-
-
Ravn, M.M.1
Coates, R.M.2
Flory, J.E.3
Peters, R.J.4
Croteau, R.5
-
31
-
-
11244281311
-
The "evolvability" of promiscuous protein functions
-
Aharoni A, et al. (2005) The "evolvability" of promiscuous protein functions. Nat Genet 37(1):73-76.
-
(2005)
Nat Genet
, vol.37
, Issue.1
, pp. 73-76
-
-
Aharoni, A.1
-
32
-
-
0034213801
-
Evolution of a metabolic pathway for degradation of a toxic xenobiotic: The patchwork approach
-
Copley SD (2000) Evolution of a metabolic pathway for degradation of a toxic xenobiotic: The patchwork approach. Trends Biochem Sci 25(6):261-265.
-
(2000)
Trends Biochem Sci
, vol.25
, Issue.6
, pp. 261-265
-
-
Copley, S.D.1
-
33
-
-
34250707968
-
One pathway, many products
-
Fischbach MA, Clardy J (2007) One pathway, many products. Nat Chem Biol 3(7):353-355.
-
(2007)
Nat Chem Biol
, vol.3
, Issue.7
, pp. 353-355
-
-
Fischbach, M.A.1
Clardy, J.2
-
34
-
-
33646362289
-
Latent pathway activation and increased pathway capacity enable Escherichia coliadaptation to loss of key metabolic enzymes
-
Fong SS, Nanchen A, Palsson BO, Sauer U (2006) Latent pathway activation and increased pathway capacity enable Escherichia coliadaptation to loss of key metabolic enzymes. J Biol Chem 281(12):8024-8033.
-
(2006)
J Biol Chem
, vol.281
, Issue.12
, pp. 8024-8033
-
-
Fong, S.S.1
Nanchen, A.2
Palsson, B.O.3
Sauer, U.4
-
35
-
-
33745631233
-
Identifying and manipulating structural determinates linking catalytic specificities in terpene synthases
-
Greenhagen BT, O'Maille PE, Noel JP, Chappell J (2006) Identifying and manipulating structural determinates linking catalytic specificities in terpene synthases. Proc Natl Acad Sci USA 103(26):9826-9831.
-
(2006)
Proc Natl Acad Sci USA
, vol.103
, Issue.26
, pp. 9826-9831
-
-
Greenhagen, B.T.1
O'Maille, P.E.2
Noel, J.P.3
Chappell, J.4
-
36
-
-
51949110360
-
Quantitative exploration of the catalytic landscape separating divergent plant sesquiterpene synthases
-
O'Maille PE, et al. (2008) Quantitative exploration of the catalytic landscape separating divergent plant sesquiterpene synthases. Nat Chem Biol 4(10):617-623.
-
(2008)
Nat Chem Biol
, vol.4
, Issue.10
, pp. 617-623
-
-
O'Maille, P.E.1
-
37
-
-
0037154248
-
Abietadiene synthase catalysis: Mutational analysis of a prenyl diphosphate ionization-initiated cyclization and rearrangement
-
Peters RJ, Croteau RB (2002) Abietadiene synthase catalysis: Mutational analysis of a prenyl diphosphate ionization-initiated cyclization and rearrangement. Proc Natl Acad Sci USA 99(2):580-584.
-
(2002)
Proc Natl Acad Sci USA
, vol.99
, Issue.2
, pp. 580-584
-
-
Peters, R.J.1
Croteau, R.B.2
-
38
-
-
38949096144
-
Functional plasticity of paralogous diterpene synthases involved in conifer defense
-
Keeling CI, Weisshaar S, Lin RP, Bohlmann J (2008) Functional plasticity of paralogous diterpene synthases involved in conifer defense. Proc Natl Acad Sci USA 105(3): 1085-1090.
-
(2008)
Proc Natl Acad Sci USA
, vol.105
, Issue.3
, pp. 1085-1090
-
-
Keeling, C.I.1
Weisshaar, S.2
Lin, R.P.3
Bohlmann, J.4
-
39
-
-
34447559360
-
Neutral genetic drift can alter promiscuous protein functions, potentially aiding functional evolution
-
Bloom JD, Romero PA, Lu Z, Arnold FH (2007) Neutral genetic drift can alter promiscuous protein functions, potentially aiding functional evolution. Biol Direct 2:17.
-
(2007)
Biol Direct
, vol.2
, pp. 17
-
-
Bloom, J.D.1
Romero, P.A.2
Lu, Z.3
Arnold, F.H.4
-
40
-
-
33646178621
-
Designed divergent evolution of enzyme function
-
Yoshikuni Y, Ferrin TE, Keasling JD (2006) Designed divergent evolution of enzyme function. Nature 440(7087):1078-1082.
-
(2006)
Nature
, vol.440
, Issue.7087
, pp. 1078-1082
-
-
Yoshikuni, Y.1
Ferrin, T.E.2
Keasling, J.D.3
-
41
-
-
33845917081
-
Structure and reaction geometry of geranylgeranyl diphosphate synthase from Sinapis alba
-
Kloer DP, Welsch R, Beyer P, Schulz GE (2006) Structure and reaction geometry of geranylgeranyl diphosphate synthase from Sinapis alba. Biochemistry 45(51): 15197-15204.
-
(2006)
Biochemistry
, vol.45
, Issue.51
, pp. 15197-15204
-
-
Kloer, D.P.1
Welsch, R.2
Beyer, P.3
Schulz, G.E.4
-
42
-
-
2442651453
-
A new geranylgeranyl diphosphate synthase gene from Ginkgo biloba, which intermediates the biosynthesis of the key precursor for ginkgolides
-
Liao Z, et al. (2004) A new geranylgeranyl diphosphate synthase gene from Ginkgo biloba, which intermediates the biosynthesis of the key precursor for ginkgolides. DNA Sequence 15(2):153-158.
-
(2004)
DNA Sequence
, vol.15
, Issue.2
, pp. 153-158
-
-
Liao, Z.1
-
43
-
-
0032422236
-
Cloning and functional expression of a cDNA encoding geranylgeranyl diphosphate synthase from Taxus canadensis and assessment of the role of this prenyltransferase in cells induced for Taxol production
-
Hefner J, Ketchum REB, Croteau R (1998) Cloning and functional expression of a cDNA encoding geranylgeranyl diphosphate synthase from Taxus canadensis and assessment of the role of this prenyltransferase in cells induced for Taxol production. Arch Biochem Biophys 360(1):62-74.
-
(1998)
Arch Biochem Biophys
, vol.360
, Issue.1
, pp. 62-74
-
-
Hefner, J.1
Ketchum, R.E.B.2
Croteau, R.3
-
44
-
-
1542275565
-
Structural basis for bisphosphonate-mediated inhibition of isoprenoid biosynthesis
-
Hosfield DJ, et al. (2004) Structural basis for bisphosphonate-mediated inhibition of isoprenoid biosynthesis. J Biol Chem 279(10):8526-8529.
-
(2004)
J Biol Chem
, vol.279
, Issue.10
, pp. 8526-8529
-
-
Hosfield, D.J.1
-
45
-
-
68449088806
-
Synthetic protein scaffolds provide modular control over metabolic flux
-
Dueber JE, et al. (2009) Synthetic protein scaffolds provide modular control over metabolic flux. Nat Biotechnol 27(8):753-759.
-
(2009)
Nat Biotechnol
, vol.27
, Issue.8
, pp. 753-759
-
-
Dueber, J.E.1
-
46
-
-
68449103617
-
Stabilizedgeneduplicationenableslongterm selection-free heterologous pathway expression
-
TyoKE,AjikumarPK,StephanopoulosG(2009) Stabilizedgeneduplicationenableslongterm selection-free heterologous pathway expression. Nat Biotechnol 27(8):760-765.
-
(2009)
Nat Biotechnol
, vol.27
, Issue.8
, pp. 760-765
-
-
Tyo, K.E.1
Ajikumar, P.K.2
Stephanopoulos, G.3
-
47
-
-
76849089864
-
Increasing diterpene yield with a modular metabolic engineering system in E. coli: Comparison of MEV and MEP isoprenoid precursor pathway engineering
-
Morrone D, et al. (2010) Increasing diterpene yield with a modular metabolic engineering system in E. coli: Comparison of MEV and MEP isoprenoid precursor pathway engineering. Appl Microbiol Biotechnol 85(6):1893-1906.
-
(2010)
Appl Microbiol Biotechnol
, vol.85
, Issue.6
, pp. 1893-1906
-
-
Morrone, D.1
-
48
-
-
0030796451
-
Structural basis for cyclic terpene biosynthesis by tobacco 5-epi-aristolochene synthase
-
Starks CM, Back K, Chappell J, Noel JP (1997) Structural basis for cyclic terpene biosynthesis by tobacco 5-epi-aristolochene synthase. Science 277(5333):1815-1820.
-
(1997)
Science
, vol.277
, Issue.5333
, pp. 1815-1820
-
-
Starks, C.M.1
Back, K.2
Chappell, J.3
Noel, J.P.4
-
49
-
-
36448991500
-
Clustal W and Clustal X version 2
-
Larkin MA, et al. (2007) Clustal W and Clustal X version 2. Bioinformatics 23(21): 2947-2948.
-
(2007)
Bioinformatics
, vol.23
, Issue.21
, pp. 2947-2948
-
-
Larkin, M.A.1
-
50
-
-
67650500988
-
CHARMM: The biomolecular simulation program
-
Brooks BR, et al. (2009) CHARMM: The biomolecular simulation program. J Comput Chem 30(10):1545-1614.
-
(2009)
J Comput Chem
, vol.30
, Issue.10
, pp. 1545-1614
-
-
Brooks, B.R.1
-
51
-
-
84986512474
-
CHARMM: A program for macromolecular energy, minimization, and dynamics calculations
-
Brooks BR, et al. (1983) CHARMM: A program for macromolecular energy, minimization, and dynamics calculations. J Comput Chem 4(2):187-217.
-
(1983)
J Comput Chem
, vol.4
, Issue.2
, pp. 187-217
-
-
Brooks, B.R.1
|