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Volumn 12, Issue 3, 2010, Pages 284-293

Functional genomics and cancer drug target discovery

Author keywords

Cancer; Functional genomics; Molecular target; Oncogene; Synthetic lethality; Tumor suppressor

Indexed keywords

CISPLATIN; COMPLEMENTARY DNA; GEFITINIB; MICRORNA; OLAPARIB; PACLITAXEL; RAPAMYCIN; SHORT HAIRPIN RNA; SMALL INTERFERING RNA;

EID: 77953205629     PISSN: 14648431     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Review
Times cited : (13)

References (97)
  • 1
    • 54549108740 scopus 로고    scopus 로고
    • Comprehensive genomic characterization defines human glioblastoma genes and core pathways
    • TCGA
    • TCGA: Comprehensive genomic characterization defines human glioblastoma genes and core pathways. Nature (2008) 455(7216):1061-1068.
    • (2008) Nature , vol.455 , Issue.7216 , pp. 1061-1068
  • 8
    • 0024549453 scopus 로고
    • Gene targeting with retroviral vectors: Recombination by gene conversion into regions of nonhomology
    • Ellis J, Bernstein A: Gene targeting with retroviral vectors: Recombination by gene conversion into regions of nonhomology. Mol Cell Biol (1989) 9(4):1621-1627.
    • (1989) Mol Cell Biol , vol.9 , Issue.4 , pp. 1621-1627
    • Ellis, J.1    Bernstein, A.2
  • 9
    • 0033533612 scopus 로고    scopus 로고
    • 14-3-3- is required to prevent mitotic catastrophe after DNA damage
    • Chan TA, Hermeking H, Lengauer C, Kinzler KW, Vogelstein B: 14-3-3- is required to prevent mitotic catastrophe after DNA damage. Nature (1999) 401(6753):616-620.
    • (1999) Nature , vol.401 , Issue.6753 , pp. 616-620
    • Chan, T.A.1    Hermeking, H.2    Lengauer, C.3    Kinzler, K.W.4    Vogelstein, B.5
  • 14
    • 0034737298 scopus 로고    scopus 로고
    • RNAi: Doublestranded RNA directs the ATP-dependent cleavage of mRNA at 21 to 23 nucleotide intervals
    • Zamore PD, Tuschl T, Sharp PA, Bartel DP: RNAi: Doublestranded RNA directs the ATP-dependent cleavage of mRNA at 21 to 23 nucleotide intervals. Cell (2000) 101(1): 25-33.
    • (2000) Cell , vol.101 , Issue.1 , pp. 25-33
    • Zamore, P.D.1    Tuschl, T.2    Sharp, P.A.3    Bartel, D.P.4
  • 15
    • 0035905766 scopus 로고    scopus 로고
    • Role for a bidentate ribonuclease in the initiation step of RNA interference
    • Bernstein E, Caudy AA, Hammond SM, Hannon GJ: Role for a bidentate ribonuclease in the initiation step of RNA interference. Nature (2001) 409(6818):363-366.
    • (2001) Nature , vol.409 , Issue.6818 , pp. 363-366
    • Bernstein, E.1    Caudy, A.A.2    Hammond, S.M.3    Hannon, G.J.4
  • 17
    • 0037031576 scopus 로고    scopus 로고
    • Single-stranded antisense siRNAs guide target RNA cleavage in RNAi
    • Martinez J, Patkaniowska A, Urlaub H, Luhrmann R, Tuschl T: Single-stranded antisense siRNAs guide target RNA cleavage in RNAi. Cell (2002) 110(5):563-574.
    • (2002) Cell , vol.110 , Issue.5 , pp. 563-574
    • Martinez, J.1    Patkaniowska, A.2    Urlaub, H.3    Luhrmann, R.4    Tuschl, T.5
  • 19
    • 77955492383 scopus 로고    scopus 로고
    • Functional screening identifies a microRNA, miR-491 that induces apoptosis by targeting Bcl-X( L) in colorectal cancer cells
    • doi:10.1002/ijc.25143
    • Nakano H, Miyazawa T, Kinoshita K, Yamada Y, Yoshida T: Functional screening identifies a microRNA, miR-491 that induces apoptosis by targeting Bcl-X(L) in colorectal cancer cells. Int J Cancer (2009): doi:10.1002/ijc.25143.
    • (2009) Int J Cancer
    • Nakano, H.1    Miyazawa, T.2    Kinoshita, K.3    Yamada, Y.4    Yoshida, T.5
  • 21
    • 0030585155 scopus 로고    scopus 로고
    • When two strands are better than one: The mediators and modulators of the cellular responses to double-stranded RNA
    • Jacobs BL, Langland JO: When two strands are better than one: The mediators and modulators of the cellular responses to double-stranded RNA. Virology (1996) 219(2):339-349.
    • (1996) Virology , vol.219 , Issue.2 , pp. 339-349
    • Jacobs, B.L.1    Langland, J.O.2
  • 22
    • 0035942736 scopus 로고    scopus 로고
    • Duplexes of 21-nucleotide RNAs mediate RNA interference in cultured mammalian cells
    • Elbashir SM, Harborth J, Lendeckel W, Yalcin A, Weber K, Tuschl T: Duplexes of 21-nucleotide RNAs mediate RNA interference in cultured mammalian cells. Nature (2001) 411(6836):494-498.
    • (2001) Nature , vol.411 , Issue.6836 , pp. 494-498
    • Elbashir, S.M.1    Harborth, J.2    Lendeckel, W.3    Yalcin, A.4    Weber, K.5    Tuschl, T.6
  • 23
    • 0035859929 scopus 로고    scopus 로고
    • Specific inhibition of gene expression by small double-stranded RNAs in invertebrate and vertebrate systems
    • Caplen NJ, Parrish S, Imani F, Fire A, Morgan RA: Specific inhibition of gene expression by small double-stranded RNAs in invertebrate and vertebrate systems. Proc Natl Acad Sci USA (2001) 98(17):9742-9747.
    • (2001) Proc Natl Acad Sci USA , vol.98 , Issue.17 , pp. 9742-9747
    • Caplen, N.J.1    Parrish, S.2    Imani, F.3    Fire, A.4    Morgan, R.A.5
  • 24
    • 25444482607 scopus 로고    scopus 로고
    • Sequence-specific knockdown of EWS-FLI1 by targeted, nonviral delivery of small interfering RNA inhibits tumor growth in a murine model of metastatic Ewing's sarcoma
    • Hu-Lieskovan S, Heidel JD, Bartlett DW, Davis ME, Triche TJ: Sequence-specific knockdown of EWS-FLI1 by targeted, nonviral delivery of small interfering RNA inhibits tumor growth in a murine model of metastatic Ewing's sarcoma. Cancer Res (2005) 65(19):8984-8992.
    • (2005) Cancer Res , vol.65 , Issue.19 , pp. 8984-8992
    • Hu-Lieskovan, S.1    Heidel, J.D.2    Bartlett, D.W.3    Davis, M.E.4    Triche, T.J.5
  • 25
    • 26944498261 scopus 로고    scopus 로고
    • Approaches for chemically synthesized siRNA and vector-mediated RNAi
    • Amarzguioui M, Rossi JJ, Kim D: Approaches for chemically synthesized siRNA and vector-mediated RNAi. FEBS Lett (2005) 579(26):5974-5981.
    • (2005) FEBS Lett , vol.579 , Issue.26 , pp. 5974-5981
    • Amarzguioui, M.1    Rossi, J.J.2    Kim, D.3
  • 26
    • 0037134020 scopus 로고    scopus 로고
    • A system for stable expression of short interfering RNAs in mammalian cells
    • Brummelkamp TR, Bernards R, Agami R: A system for stable expression of short interfering RNAs in mammalian cells. Science (2002) 296(5567):550-553.
    • (2002) Science , vol.296 , Issue.5567 , pp. 550-553
    • Brummelkamp, T.R.1    Bernards, R.2    Agami, R.3
  • 30
    • 33746421591 scopus 로고    scopus 로고
    • From genome to proteome: Developing expression clone resources for the human genome
    • Temple G, Lamesch P, Milstein S, Hill DE, Wagner L, Moore T, Vidal M: From genome to proteome: Developing expression clone resources for the human genome. Hum Mol Genet (2006) 15(Spec No 1):R31-43.
    • (2006) Hum Mol Genet , vol.15 , Issue.SPEC. NO. 1
    • Temple, G.1    Lamesch, P.2    Milstein, S.3    Hill, D.E.4    Wagner, L.5    Moore, T.6    Vidal, M.7
  • 32
    • 77953198302 scopus 로고    scopus 로고
    • The Orfeome Collaboration: (2005). www.orfeomecollaboration. org
    • (2005)
  • 33
    • 56749164864 scopus 로고    scopus 로고
    • Expression of 24,426 human alternative splicing events and predicted cis regulation in 48 tissues and cell lines
    • Castle JC, Zhang C, Shah JK, Kulkarni AV, Kalsotra A, Cooper TA, Johnson JM: Expression of 24,426 human alternative splicing events and predicted cis regulation in 48 tissues and cell lines. Nat Genet (2008) 40(12):1416-1425.
    • (2008) Nat Genet , vol.40 , Issue.12 , pp. 1416-1425
    • Castle, J.C.1    Zhang, C.2    Shah, J.K.3    Kulkarni, A.V.4    Kalsotra, A.5    Cooper, T.A.6    Johnson, J.M.7
  • 35
    • 56749098074 scopus 로고    scopus 로고
    • Deep surveying of alternative splicing complexity in the human transcriptome by high-throughput sequencing
    • Pan Q, Shai O, Lee LJ, Frey BJ, Blencowe BJ: Deep surveying of alternative splicing complexity in the human transcriptome by high-throughput sequencing. Nat Genet (2008) 40(12):1413-1415.
    • (2008) Nat Genet , vol.40 , Issue.12 , pp. 1413-1415
    • Pan, Q.1    Shai, O.2    Lee, L.J.3    Frey, B.J.4    Blencowe, B.J.5
  • 38
    • 0035799654 scopus 로고    scopus 로고
    • Microarrays of cells expressing defined cDNAs
    • Ziauddin J, Sabatini DM: Microarrays of cells expressing defined cDNAs. Nature (2001) 411(6833):107-110.
    • (2001) Nature , vol.411 , Issue.6833 , pp. 107-110
    • Ziauddin, J.1    Sabatini, D.M.2
  • 39
    • 31744445957 scopus 로고    scopus 로고
    • Microarrays of lentiviruses for gene function screens in immortalized and primary cells
    • Bailey SN, Ali SM, Carpenter AE, Higgins CO, Sabatini DM: Microarrays of lentiviruses for gene function screens in immortalized and primary cells. Nat Methods (2006) 3(2): 117-122.
    • (2006) Nat Methods , vol.3 , Issue.2 , pp. 117-122
    • Bailey, S.N.1    Ali, S.M.2    Carpenter, A.E.3    Higgins, C.O.4    Sabatini, D.M.5
  • 46
    • 70349536006 scopus 로고    scopus 로고
    • In vivo RNAi screening identifies regulators of actin dynamics as key determinants of lymphoma progression
    • Meacham CE, Ho EE, Dubrovsky E, Gertler FB, Hemann MT: In vivo RNAi screening identifies regulators of actin dynamics as key determinants of lymphoma progression. Nat Genet (2009) 41(10):1133-1137.
    • (2009) Nat Genet , vol.41 , Issue.10 , pp. 1133-1137
    • Meacham, C.E.1    Ho, E.E.2    Dubrovsky, E.3    Gertler, F.B.4    Hemann, M.T.5
  • 48
    • 35548953686 scopus 로고    scopus 로고
    • An elaborate pathway required for Ras-mediated epigenetic silencing
    • Gazin C, Wajapeyee N, Gobeil S, Virbasius CM, Green MR: An elaborate pathway required for Ras-mediated epigenetic silencing. Nature (2007) 449(7165):1073-1077.
    • (2007) Nature , vol.449 , Issue.7165 , pp. 1073-1077
    • Gazin, C.1    Wajapeyee, N.2    Gobeil, S.3    Virbasius, C.M.4    Green, M.R.5
  • 51
    • 70349650786 scopus 로고    scopus 로고
    • Live-cell imaging of caspase activation for high-content screening
    • Antczak C, Takagi T, Ramirez CN, Radu C, Djaballah H: Live-cell imaging of caspase activation for high-content screening. J Biomol Screen (2009) 14(8):956-969.
    • (2009) J Biomol Screen , vol.14 , Issue.8 , pp. 956-969
    • Antczak, C.1    Takagi, T.2    Ramirez, C.N.3    Radu, C.4    Djaballah, H.5
  • 57
    • 34548159455 scopus 로고    scopus 로고
    • Functional genomic analysis reveals cross-talk between peroxisome proliferator-activated receptor and calcium signaling in human colorectal cancer cells
    • Bush CR, Havens JM, Necela BM, Su W, Chen L, Yanagisawa M, Anastasiadis PZ, Guerra R, Luxon BA, Thompson EA: Functional genomic analysis reveals cross-talk between peroxisome proliferator-activated receptor and calcium signaling in human colorectal cancer cells. J Biol Chem (2007) 282(32): 23387-23401.
    • (2007) J Biol Chem , vol.282 , Issue.32 , pp. 23387-23401
    • Bush, C.R.1    Havens, J.M.2    Necela, B.M.3    Su, W.4    Chen, L.5    Yanagisawa, M.6    Anastasiadis, P.Z.7    Guerra, R.8    Luxon, B.A.9    Thompson, E.A.10
  • 59
    • 0141750434 scopus 로고    scopus 로고
    • Identification of modulators of TRAIL-induced apoptosis via RNAi-based phenotypic screening
    • Aza-Blanc P, Cooper CL, Wagner K, Batalov S, Deveraux QL, Cooke MP: Identification of modulators of TRAIL-induced apoptosis via RNAi-based phenotypic screening. Mol Cell (2003) 12(3):627-637.
    • (2003) Mol Cell , vol.12 , Issue.3 , pp. 627-637
    • Aza-Blanc, P.1    Cooper, C.L.2    Wagner, K.3    Batalov, S.4    Deveraux, Q.L.5    Cooke, M.P.6
  • 61
    • 34547107098 scopus 로고    scopus 로고
    • RNAi screen identifies UBE2D3 as a mediator of all-trans retinoic acid-induced cell growth arrest in human acute promyelocytic NB4 cells
    • Hattori H, Zhang X, Jia Y, Subramanian KK, Jo H, Loison F, Newburger PE, Luo HR: RNAi screen identifies UBE2D3 as a mediator of all-trans retinoic acid-induced cell growth arrest in human acute promyelocytic NB4 cells. Blood (2007) 110(2):640-650.
    • (2007) Blood , vol.110 , Issue.2 , pp. 640-650
    • Hattori, H.1    Zhang, X.2    Jia, Y.3    Subramanian, K.K.4    Jo, H.5    Loison, F.6    Newburger, P.E.7    Luo, H.R.8
  • 72
    • 0027515605 scopus 로고
    • Synthetic enhancement in gene interaction: A genetic tool come of age
    • Guarente L: Synthetic enhancement in gene interaction: A genetic tool come of age. Trends Genet (1993) 9(10):362-366.
    • (1993) Trends Genet , vol.9 , Issue.10 , pp. 362-366
    • Guarente, L.1
  • 73
    • 0029870293 scopus 로고    scopus 로고
    • Establishing genetic interactions by a synthetic dosage lethality phenotype
    • Kroll ES, Hyland KM, Hieter P, Li JJ: Establishing genetic interactions by a synthetic dosage lethality phenotype. Genetics (1996) 143(1):95-102.
    • (1996) Genetics , vol.143 , Issue.1 , pp. 95-102
    • Kroll, E.S.1    Hyland, K.M.2    Hieter, P.3    Li, J.J.4
  • 75
    • 0030667434 scopus 로고    scopus 로고
    • Integrating genetic approaches into the discovery of anticancer drugs
    • Hartwell LH, Szankasi P, Roberts CJ, Murray AW, Friend SH: Integrating genetic approaches into the discovery of anticancer drugs. Science (1997) 278(5340):1064-1068.
    • (1997) Science , vol.278 , Issue.5340 , pp. 1064-1068
    • Hartwell, L.H.1    Szankasi, P.2    Roberts, C.J.3    Murray, A.W.4    Friend, S.H.5
  • 76
    • 61449182121 scopus 로고    scopus 로고
    • Principles of cancer therapy: Oncogene and non-oncogene addiction
    • Luo J, Solimini NL, Elledge SJ: Principles of cancer therapy: Oncogene and non-oncogene addiction. Cell (2009) 136(5): 823-837.
    • (2009) Cell , vol.136 , Issue.5 , pp. 823-837
    • Luo, J.1    Solimini, N.L.2    Elledge, S.J.3
  • 77
    • 25444497278 scopus 로고    scopus 로고
    • The concept of synthetic lethality in the context of anticancer therapy
    • Kaelin WG Jr: The concept of synthetic lethality in the context of anticancer therapy. Nat Rev Cancer (2005) 5(9):689-698.
    • (2005) Nat Rev Cancer , vol.5 , Issue.9 , pp. 689-698
    • Kaelin Jr., W.G.1
  • 78
    • 76449110054 scopus 로고    scopus 로고
    • Synthetic lethality: A framework for the development of wiser cancer therapeutics
    • Kaelin WG Jr: Synthetic lethality: A framework for the development of wiser cancer therapeutics. Genome Med (2009) 1(10):99.
    • (2009) Genome Med , vol.1 , Issue.10 , pp. 99
    • Kaelin Jr., W.G.1
  • 82
    • 4944229642 scopus 로고    scopus 로고
    • Hallmarks of 'BRCAness' in sporadic cancers
    • Turner N, Tutt A, Ashworth A: Hallmarks of 'BRCAness' in sporadic cancers. Nat Rev Cancer (2004) 4(10):814-819.
    • (2004) Nat Rev Cancer , vol.4 , Issue.10 , pp. 814-819
    • Turner, N.1    Tutt, A.2    Ashworth, A.3
  • 86
    • 55949101858 scopus 로고    scopus 로고
    • Kinase requirements in human cells: III Altered kinase requirements in VHL-/- cancer cells detected in a pilot synthetic lethal screen
    • Bommi-Reddy A, Almeciga I, Sawyer J, Geisen C, Li W, Harlow E, Kaelin WG Jr, Grueneberg DA: Kinase requirements in human cells: III. Altered kinase requirements in VHL-/- cancer cells detected in a pilot synthetic lethal screen. Proc Natl Acad Sci USA (2008) 105(43):16484-16489.
    • (2008) Proc Natl Acad Sci USA , vol.105 , Issue.43 , pp. 16484-16489
    • Bommi-Reddy, A.1    Almeciga, I.2    Sawyer, J.3    Geisen, C.4    Li, W.5    Harlow, E.6    Kaelin Jr., W.G.7    Grueneberg, D.A.8
  • 88
    • 20444419344 scopus 로고    scopus 로고
    • Sensitized RNAi screen of human kinases and phosphatases identifies new regulators of apoptosis and chemoresistance
    • MacKeigan JP, Murphy LO, Blenis J: Sensitized RNAi screen of human kinases and phosphatases identifies new regulators of apoptosis and chemoresistance. Nat Cell Biol (2005) 7(6): 591-600.
    • (2005) Nat Cell Biol , vol.7 , Issue.6 , pp. 591-600
    • MacKeigan, J.P.1    Murphy, L.O.2    Blenis, J.3
  • 91
    • 27244444199 scopus 로고    scopus 로고
    • A TRAIL receptor-dependent synthetic lethal relationship between Myc activation and GSK3-/FBW7 loss of function
    • Rottmann S, Wang Y, Nasoff M, Deveraux QL, Quon KC: A TRAIL receptor-dependent synthetic lethal relationship between Myc activation and GSK3-/FBW7 loss of function. Proc Natl Acad Sci USA (2005) 102(42):15195-15200.
    • (2005) Proc Natl Acad Sci USA , vol.102 , Issue.42 , pp. 15195-15200
    • Rottmann, S.1    Wang, Y.2    Nasoff, M.3    Deveraux, Q.L.4    Quon, K.C.5
  • 92
    • 58549104540 scopus 로고    scopus 로고
    • Compensatory IKK- activation of classical NF-B signaling during IKK- inhibition identified by an RNA interference sensitization screen
    • Lam LT, Davis RE, Ngo VN, Lenz G, Wright G, Xu W, Zhao H, Yu X, Dang L, Staudt LM: Compensatory IKK- activation of classical NF-B signaling during IKK- inhibition identified by an RNA interference sensitization screen. Proc Natl Acad Sci USA (2008) 105(52):20798-20803.
    • (2008) Proc Natl Acad Sci USA , vol.105 , Issue.52 , pp. 20798-20803
    • Lam, L.T.1    Davis, R.E.2    Ngo, V.N.3    Lenz, G.4    Wright, G.5    Xu, W.6    Zhao, H.7    Yu, X.8    Dang, L.9    Staudt, L.M.10


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