-
1
-
-
33646904758
-
-
Daggett, V. (2006) J. Mol. Biol., 106, 1898-1916.
-
(2006)
J. Mol. Biol
, vol.106
, pp. 1898-1916
-
-
Daggett, V.1
-
6
-
-
0035843166
-
-
Klibanov, A.M. (2001) Nature, 409, 241-246.
-
(2001)
Nature
, vol.409
, pp. 241-246
-
-
Klibanov, A.M.1
-
8
-
-
0027321564
-
-
Frizpatrick, P. A., Steinmetz, C. U., Ringe, D. and Klibanov, A. M. ( 1993) Proc. Natl. Acad. Sci. USA, 90, 8653-8657.
-
(1993)
Proc. Natl. Acad. Sci. USA
, vol.90
, pp. 8653-8657
-
-
Frizpatrick, P.A.1
Steinmetz, C.U.2
Ringe, D.3
Klibanov, A.M.4
-
9
-
-
0032573075
-
-
Schmitze, J. L., Stem, L. J. and Klibanov, A. M. (1998) Proc. Natl. Acad. Sci. USA, 95, 12918-12923.
-
(1998)
Proc. Natl. Acad. Sci. USA
, vol.95
, pp. 12918-12923
-
-
Schmitze, J.L.1
Stem, L.J.2
Klibanov, A.M.3
-
10
-
-
11044231158
-
-
Krieger, N., Bhatnagar, T., Baratti, J. C., Baron, A. M., de Lima, V. M. and Mitchell, D. (2004) Food Technol. Biotechnol, 42, 279-286.
-
(2004)
Food Technol. Biotechnol
, vol.42
, pp. 279-286
-
-
Krieger, N.1
Bhatnagar, T.2
Baratti, J.C.3
Baron, A.M.4
de Lima, V.M.5
Mitchell, D.6
-
16
-
-
49249091161
-
-
Schlick, T. (2002) Molecular Modeling and Simulation. An Interdisciplinary Guide (Springer).
-
Schlick, T. (2002) Molecular Modeling and Simulation. An Interdisciplinary Guide (Springer).
-
-
-
-
20
-
-
0442326613
-
-
Geerke, D. P., Oostenbrink, C., van der Vegt, N. F. A. and van Gunsteren, W. F. (2004) J. Phys. Chem. B, 108, 1436-1445.
-
(2004)
J. Phys. Chem. B
, vol.108
, pp. 1436-1445
-
-
Geerke, D.P.1
Oostenbrink, C.2
van der Vegt, N.F.A.3
van Gunsteren, W.F.4
-
21
-
-
0034499271
-
-
Fioroni, M., Burger, K., Mark, A., E. and Roccatano, D. (2000) J. Phys. Chem. B, 104, 12347-12354.
-
(2000)
J. Phys. Chem. B
, vol.104
, pp. 12347-12354
-
-
Fioroni, M.1
Burger, K.2
Mark, A.E.3
Roccatano, D.4
-
23
-
-
4444282928
-
-
Oostenbrink, C., Villa, A., Mark, A. E. and van Gunsteren, W. F. ( 2004) J. Comp. Chem., 25, 1656-1676.
-
(2004)
J. Comp. Chem
, vol.25
, pp. 1656-1676
-
-
Oostenbrink, C.1
Villa, A.2
Mark, A.E.3
van Gunsteren, W.F.4
-
24
-
-
34250312085
-
-
Villa, A., Fan, H., Wassenaar, T. and Mark, A. E. (2007) J. Phys. Chem. B, 111, 6015-6025.
-
(2007)
J. Phys. Chem. B
, vol.111
, pp. 6015-6025
-
-
Villa, A.1
Fan, H.2
Wassenaar, T.3
Mark, A.E.4
-
25
-
-
11244289541
-
-
Soares, T. A., Daura, X., Oostenbrink, C., Smith, L. J. and van Gunsteren, W. F. (2004) J. Mol. NMR, 30, 407-422.
-
(2004)
J. Mol. NMR
, vol.30
, pp. 407-422
-
-
Soares, T.A.1
Daura, X.2
Oostenbrink, C.3
Smith, L.J.4
van Gunsteren, W.F.5
-
28
-
-
0041784950
-
-
MacKerell, A. D., Bashford, D., Bellott, M., Dunbrack, R. L., Evanseck, J. D., Field, M. J., Fischer, S., Gao, J., Guo, H., Ha, S., Joseph-McCarthy, D., Kuchnir, L., Kuczera, K., Lau, F. T. K., Mattos, C., Michnick, S., Ngo, T., Nguyen, D. T., Prodhom, B., Reiher, W. E., Roux, B., Schlenkrich, M., Smith, J. C., Stote, R., Straub, J., Watanabe, M., Wiorkiewicz-Kuczera, J., Yin, D. and Karplus, M. (1998) J. Phys. Chem. B, 102, 3586-3616.
-
(1998)
J. Phys. Chem. B
, vol.102
, pp. 3586-3616
-
-
MacKerell, A.D.1
Bashford, D.2
Bellott, M.3
Dunbrack, R.L.4
Evanseck, J.D.5
Field, M.J.6
Fischer, S.7
Gao, J.8
Guo, H.9
Ha, S.10
Joseph-McCarthy, D.11
Kuchnir, L.12
Kuczera, K.13
Lau, F.T.K.14
Mattos, C.15
Michnick, S.16
Ngo, T.17
Nguyen, D.T.18
Prodhom, B.19
Reiher, W.E.20
Roux, B.21
Schlenkrich, M.22
Smith, J.C.23
Stote, R.24
Straub, J.25
Watanabe, M.26
Wiorkiewicz-Kuczera, J.27
Yin, D.28
Karplus, M.29
more..
-
29
-
-
6344260593
-
-
Mackerell, A. D., Wiorkiewiczkuczera, J. and Karplus, M. (1995) J. Am. Chem. Soc., 117, 11946-11975.
-
(1995)
J. Am. Chem. Soc
, vol.117
, pp. 11946-11975
-
-
Mackerell, A.D.1
Wiorkiewiczkuczera, J.2
Karplus, M.3
-
30
-
-
23444454552
-
-
Case, D. A., Cheatham, T. E., Darden, T., Gohlke, H., Luo, R., Merz, K. M., Onufriev, A., Simmerling, C., Wang, B. and Woods, R. J. (2005) J. Comp. Chem., 26, 1668-1688.
-
(2005)
J. Comp. Chem
, vol.26
, pp. 1668-1688
-
-
Case, D.A.1
Cheatham, T.E.2
Darden, T.3
Gohlke, H.4
Luo, R.5
Merz, K.M.6
Onufriev, A.7
Simmerling, C.8
Wang, B.9
Woods, R.J.10
-
31
-
-
2942532422
-
-
Wang, J. M., Wolf, R. M., Caldwell, J. W., Kollman, P. A. and Case, D. A. (2004) J. Comp. Chem., 25, 1157-1174.
-
(2004)
J. Comp. Chem
, vol.25
, pp. 1157-1174
-
-
Wang, J.M.1
Wolf, R.M.2
Caldwell, J.W.3
Kollman, P.A.4
Case, D.A.5
-
32
-
-
11144347566
-
-
Wang, J. M., Wolf, R. M., Caldwell, J. W., Kollman, P. A. and Case, D. A. (2005) J. Comp. Chem., 26, 114-114.
-
(2005)
J. Comp. Chem
, vol.26
, pp. 114-114
-
-
Wang, J.M.1
Wolf, R.M.2
Caldwell, J.W.3
Kollman, P.A.4
Case, D.A.5
-
33
-
-
33644848399
-
-
Freddolino, P. L., Arkhipov, A. S., Larson, S. B., McPherson, A. and Schulten, K. (2006) Structure, 14, 437-449.
-
(2006)
Structure
, vol.14
, pp. 437-449
-
-
Freddolino, P.L.1
Arkhipov, A.S.2
Larson, S.B.3
McPherson, A.4
Schulten, K.5
-
36
-
-
0038440651
-
-
Gerini, M. F., Roccatano, D., Baciocchi, E. and Di Nola, A. (2003) Bioph. J., 84, 3883-3893.
-
(2003)
Bioph. J
, vol.84
, pp. 3883-3893
-
-
Gerini, M.F.1
Roccatano, D.2
Baciocchi, E.3
Di Nola, A.4
-
37
-
-
23944449621
-
-
Roccatano, D., Wong, T. S., Schwaneberg, U. and Zacharias, M. (2005) Biopolymers, 78, 259-267.
-
(2005)
Biopolymers
, vol.78
, pp. 259-267
-
-
Roccatano, D.1
Wong, T.S.2
Schwaneberg, U.3
Zacharias, M.4
-
38
-
-
33845219786
-
-
Roccatano, D., Wong, T. S., Schwaneberg, U. and Zacharias, M. (2006) Biopolymers, 83, 467-476.
-
(2006)
Biopolymers
, vol.83
, pp. 467-476
-
-
Roccatano, D.1
Wong, T.S.2
Schwaneberg, U.3
Zacharias, M.4
-
39
-
-
33846367377
-
-
Pal, S., Milano, G. and Roccatano, D. (2006) J. Phys. Chem. B, 110, 26170-26179.
-
(2006)
J. Phys. Chem. B
, vol.110
, pp. 26170-26179
-
-
Pal, S.1
Milano, G.2
Roccatano, D.3
-
42
-
-
33847201903
-
-
Beck, D. A. C., White, G. W. N. and Daggett, V. (2007) J. Struct. Biol., 157, 514-523.
-
(2007)
J. Struct. Biol
, vol.157
, pp. 514-523
-
-
Beck, D.A.C.1
White, G.W.N.2
Daggett, V.3
-
45
-
-
33644938813
-
-
Zhang, D. Q., Gullingsrud, J. and McCammon, J. A. (2006) J. Am. Chem. Soc., 128, 3019-3026.
-
(2006)
J. Am. Chem. Soc
, vol.128
, pp. 3019-3026
-
-
Zhang, D.Q.1
Gullingsrud, J.2
McCammon, J.A.3
-
46
-
-
34447253999
-
-
Jensen, M. O., Yin, Y., Tajkhorshid, E. and Schulten, K. (2007) Bioph. J., 93, 92-102.
-
(2007)
Bioph. J
, vol.93
, pp. 92-102
-
-
Jensen, M.O.1
Yin, Y.2
Tajkhorshid, E.3
Schulten, K.4
-
47
-
-
35448968223
-
-
Widge, A. S., Matsuoka, Y. and Kurnikova, M. (2007) Langmuir, 23, 10672-10681.
-
(2007)
Langmuir
, vol.23
, pp. 10672-10681
-
-
Widge, A.S.1
Matsuoka, Y.2
Kurnikova, M.3
-
52
-
-
33746271105
-
-
van Gunsteren, W. F., Bakowies, D., Baron, R., Chandrasekhar, I., Christen, M., Daura, X., Gee, P., Geerke, D. P., Glättli, A., Hünenberger, P. H., Kastenholz, M. A., Oostenbrink, C., Schenk, M., Trzesniak, M., van der Vegt, N. F. A. and Yu, H. B. (2006) Angew. Chem. Int. Ed., 45, 4064-4092.
-
(2006)
Angew. Chem. Int. Ed
, vol.45
, pp. 4064-4092
-
-
van Gunsteren, W.F.1
Bakowies, D.2
Baron, R.3
Chandrasekhar, I.4
Christen, M.5
Daura, X.6
Gee, P.7
Geerke, D.P.8
Glättli, A.9
Hünenberger, P.H.10
Kastenholz, M.A.11
Oostenbrink, C.12
Schenk, M.13
Trzesniak, M.14
van der Vegt, N.F.A.15
Yu, H.B.16
-
55
-
-
0032881707
-
-
Roccatano, D., Amadei, A., Di Nola, A. and Berendsen, H. J. C. (1999) Protein Sci., 8, 2130-2143.
-
(1999)
Protein Sci
, vol.8
, pp. 2130-2143
-
-
Roccatano, D.1
Amadei, A.2
Di Nola, A.3
Berendsen, H.J.C.4
-
56
-
-
19644385843
-
-
De Simone, A., Dodson, G. G., Verma, C. S., Zagari, A. and Fraternali, F. (2005) Proc. Natl. Acad. Sci. USA, 102, 7535-7540.
-
(2005)
Proc. Natl. Acad. Sci. USA
, vol.102
, pp. 7535-7540
-
-
De Simone, A.1
Dodson, G.G.2
Verma, C.S.3
Zagari, A.4
Fraternali, F.5
-
57
-
-
33646130169
-
-
De Simone, A., Spadaccini, R., Temussi, P. A. and Fraternali, F. ( 2006) Bioph. J., 90, 3052-3061.
-
(2006)
Bioph. J
, vol.90
, pp. 3052-3061
-
-
De Simone, A.1
Spadaccini, R.2
Temussi, P.A.3
Fraternali, F.4
-
60
-
-
0035044857
-
-
English, A. C., Groom, C. R. and Hubbard, R. E. (2001) Prot. Eng., 14, 47-59.
-
(2001)
Prot. Eng
, vol.14
, pp. 47-59
-
-
English, A.C.1
Groom, C.R.2
Hubbard, R.E.3
-
62
-
-
0037028161
-
-
Pal, S., Peon, J., Bagchi, B. and Zewail, A. (2002) J. Chem. Phys. B, 106, 12376-12395.
-
(2002)
J. Chem. Phys. B
, vol.106
, pp. 12376-12395
-
-
Pal, S.1
Peon, J.2
Bagchi, B.3
Zewail, A.4
-
65
-
-
0001030002
-
-
Rocchi, C., Bizzarri, A. R. and Cannistraro, S. (1998) Phys. Rev. E, 57, 3315-3325.
-
(1998)
Phys. Rev. E
, vol.57
, pp. 3315-3325
-
-
Rocchi, C.1
Bizzarri, A.R.2
Cannistraro, S.3
-
66
-
-
0030965411
-
-
Kovacs, H., Mark, A. E. and van Gunsteren, W. F. (1997) Proteins: Struct. Funct. Genet., 27, 395-404.
-
(1997)
Proteins: Struct. Funct. Genet
, vol.27
, pp. 395-404
-
-
Kovacs, H.1
Mark, A.E.2
van Gunsteren, W.F.3
-
67
-
-
22544458487
-
-
Dirama, T. E., Carri, G. A. and Sokolov, A. P. (2005) J. Chem. Phys., 122, 244910.
-
(2005)
J. Chem. Phys
, vol.122
, pp. 244910
-
-
Dirama, T.E.1
Carri, G.A.2
Sokolov, A.P.3
-
68
-
-
0031807764
-
-
Makarov, V., Feig, M., Andrews, B. K. and Pettit, B. M. (1998) Bioph. J., 75, 150-158.
-
(1998)
Bioph. J
, vol.75
, pp. 150-158
-
-
Makarov, V.1
Feig, M.2
Andrews, B.K.3
Pettit, B.M.4
-
71
-
-
0029945733
-
-
Toba, S., Hartsough, D. S. and Merz, K. M. (1996) J. Am. Chem. Soc., 118, 6490-6498.
-
(1996)
J. Am. Chem. Soc
, vol.118
, pp. 6490-6498
-
-
Toba, S.1
Hartsough, D.S.2
Merz, K.M.3
-
72
-
-
20144369761
-
-
Scharnagl, C., Reif, M. and Friedrich, J. (2005) BBA-Proteins Proteomics, 1749, 187-213.
-
(2005)
BBA-Proteins Proteomics
, vol.1749
, pp. 187-213
-
-
Scharnagl, C.1
Reif, M.2
Friedrich, J.3
-
73
-
-
25844479815
-
-
Roccatano, D., Fioroni, M., Zacharias, M. and Colombo, G. (2005) Protein Sci., 14, 2582-2589.
-
(2005)
Protein Sci
, vol.14
, pp. 2582-2589
-
-
Roccatano, D.1
Fioroni, M.2
Zacharias, M.3
Colombo, G.4
-
74
-
-
7044239742
-
-
Kollman, P. (1993) Chem. Rev., 93, 2395-2417.
-
(1993)
Chem. Rev
, vol.93
, pp. 2395-2417
-
-
Kollman, P.1
-
75
-
-
0034979318
-
-
Wang, W., Donini, O., Reyes, C. M. and Kollman, P. A. (2001) Ann. Rev. Biophys. Biomol. Struct., 30, 211-243.
-
(2001)
Ann. Rev. Biophys. Biomol. Struct
, vol.30
, pp. 211-243
-
-
Wang, W.1
Donini, O.2
Reyes, C.M.3
Kollman, P.A.4
-
76
-
-
20544464457
-
-
Snow, C. D., Sorin, E. J., Rhee, Y. M. and Pande, V. S. (2005) Ann. Rev. Biophys. Biomol. Struct., 34, 43-69.
-
(2005)
Ann. Rev. Biophys. Biomol. Struct
, vol.34
, pp. 43-69
-
-
Snow, C.D.1
Sorin, E.J.2
Rhee, Y.M.3
Pande, V.S.4
-
82
-
-
33750514340
-
-
Imai, T., Kovalenko, A. and Hirata, E. (2006) Mol. Simul., 32, 817-824.
-
(2006)
Mol. Simul
, vol.32
, pp. 817-824
-
-
Imai, T.1
Kovalenko, A.2
Hirata, E.3
-
83
-
-
33847074189
-
-
Yamazaki, T., Imai, T., Hirata, F. and Kovalenko, A. (2007) J. Phys. Chem. B, 111, 1206-1212.
-
(2007)
J. Phys. Chem. B
, vol.111
, pp. 1206-1212
-
-
Yamazaki, T.1
Imai, T.2
Hirata, F.3
Kovalenko, A.4
-
85
-
-
0032705748
-
-
English, A. C., Done, S. H., Caves, L. S. D., Groom, C. R. and Hubbard, R. E. (1999) Proteins: Struct. Funct. Genet., 37, 628-640.
-
(1999)
Proteins: Struct. Funct. Genet
, vol.37
, pp. 628-640
-
-
English, A.C.1
Done, S.H.2
Caves, L.S.D.3
Groom, C.R.4
Hubbard, R.E.5
-
86
-
-
34248524348
-
-
Kuper, J., Wong, T. S., Roccatano, D., Wilmanns, M. and Schwaneberg, U. (2007) J. Am. Chem. Soc., 129, 5786-5787.
-
(2007)
J. Am. Chem. Soc
, vol.129
, pp. 5786-5787
-
-
Kuper, J.1
Wong, T.S.2
Roccatano, D.3
Wilmanns, M.4
Schwaneberg, U.5
-
87
-
-
18844373053
-
-
Kesavulu, M. M., Ramasubramanian, S. and Suguna, K. (2005) Biochem. Biophys. Res. Commun., 331, 1510-1514.
-
(2005)
Biochem. Biophys. Res. Commun
, vol.331
, pp. 1510-1514
-
-
Kesavulu, M.M.1
Ramasubramanian, S.2
Suguna, K.3
-
90
-
-
0037126023
-
-
Roccatano, D., Colombo, G., Fioroni, M. and Mark, A. E. (2002) Proc. Natl. Acad. Sci USA, 99, 12179-12184.
-
(2002)
Proc. Natl. Acad. Sci USA
, vol.99
, pp. 12179-12184
-
-
Roccatano, D.1
Colombo, G.2
Fioroni, M.3
Mark, A.E.4
-
93
-
-
0033616575
-
-
Chiti, F., Webster, P., Taddei, N., Clark, A., Stefani, M., Ramponi, G. and Dobson, C. M. (1999) Proc. Natl. Acad Sci. USA, 96, 3590-3594.
-
(1999)
Proc. Natl. Acad Sci. USA
, vol.96
, pp. 3590-3594
-
-
Chiti, F.1
Webster, P.2
Taddei, N.3
Clark, A.4
Stefani, M.5
Ramponi, G.6
Dobson, C.M.7
-
94
-
-
16344364949
-
-
De Mori, G. M. S., Meli, M., Monticelli, L. and Colombo, G. (2005) Mini Rev. Med., Chem., 5, 353-359.
-
(2005)
Mini Rev. Med., Chem
, vol.5
, pp. 353-359
-
-
De Mori, G.M.S.1
Meli, M.2
Monticelli, L.3
Colombo, G.4
-
95
-
-
4444267407
-
-
Daidone, I., Simona, F., Roccatano, D., Broglia, R. A., Tiana, G., Colombo, G. and Di Nola, A. (2004) Proteins: Struct. Funct. Bioinform., 57, 198.
-
(2004)
Proteins: Struct. Funct. Bioinform
, vol.57
, pp. 198
-
-
Daidone, I.1
Simona, F.2
Roccatano, D.3
Broglia, R.A.4
Tiana, G.5
Colombo, G.6
Di Nola, A.7
-
98
-
-
31044436416
-
-
Pieraccini, S., Sironi, M. and Colombo, G. (2006) Chem. Phys. Lett., 418, 373-376.
-
(2006)
Chem. Phys. Lett
, vol.418
, pp. 373-376
-
-
Pieraccini, S.1
Sironi, M.2
Colombo, G.3
-
99
-
-
4143127620
-
-
Yang, L., Dordick, J. S. and Garde, S. (2004) Biophys. J., 87, 812-821.
-
(2004)
Biophys. J
, vol.87
, pp. 812-821
-
-
Yang, L.1
Dordick, J.S.2
Garde, S.3
-
100
-
-
23244449490
-
-
Micaelo, N. M., Teixeira, V. H., Baptista, A. M. and Soares, C. M. ( 2005) Bioph. J., 89, 999-1008.
-
(2005)
Bioph. J
, vol.89
, pp. 999-1008
-
-
Micaelo, N.M.1
Teixeira, V.H.2
Baptista, A.M.3
Soares, C.M.4
-
101
-
-
0037342275
-
-
Soares, C. M., Teixeira, V. H. and Baptista, A. M. (2003) Biophys. J., 84, 1628-1641.
-
(2003)
Biophys. J
, vol.84
, pp. 1628-1641
-
-
Soares, C.M.1
Teixeira, V.H.2
Baptista, A.M.3
-
102
-
-
0031972614
-
-
Sessions, R. B., Gibbs, N. and Dempsey, C. E. (1998) Biophys. J., 74, 138-152.
-
(1998)
Biophys. J
, vol.74
, pp. 138-152
-
-
Sessions, R.B.1
Gibbs, N.2
Dempsey, C.E.3
-
103
-
-
0032951553
-
-
Tieleman, D. P., Sansom, M. S. P. and Berendsen, H. J. C. (1999) Biophys. J., 76, 40-49.
-
(1999)
Biophys. J
, vol.76
, pp. 40-49
-
-
Tieleman, D.P.1
Sansom, M.S.P.2
Berendsen, H.J.C.3
-
104
-
-
0030916534
-
-
Gibbs, N., Sessions, R. B., Williams, P. B. and Dempsey, C. E. (1997) Biophys. J., 72, 2490-2495.
-
(1997)
Biophys. J
, vol.72
, pp. 2490-2495
-
-
Gibbs, N.1
Sessions, R.B.2
Williams, P.B.3
Dempsey, C.E.4
-
106
-
-
32344447540
-
-
Glattli, A., Chandrasekhar, I. and van Gunsteren, W. F. (2006) Eur. Biophys. J. Biophys., 35, 255-267.
-
(2006)
Eur. Biophys. J. Biophys
, vol.35
, pp. 255-267
-
-
Glattli, A.1
Chandrasekhar, I.2
van Gunsteren, W.F.3
-
107
-
-
0028904088
-
-
Kovacs, H., Mark, A. E., Johansson, J. and van Gunsteren, W. F. (1997) J. Mol. Biol., 247, 808-822.
-
(1997)
J. Mol. Biol
, vol.247
, pp. 808-822
-
-
Kovacs, H.1
Mark, A.E.2
Johansson, J.3
van Gunsteren, W.F.4
-
109
-
-
0011613265
-
-
Bernèche, S., Nina, M. and Roux, B. (1998) Biophys. J., 75, 1603-1618.
-
(1998)
Biophys. J
, vol.75
, pp. 1603-1618
-
-
Bernèche, S.1
Nina, M.2
Roux, B.3
-
111
-
-
0346156101
-
-
Yu, H. B., Daura, X. and van Gunsteren, W. F. (2004) Proteins: Struct., Funct. Genet., 54, 116-127.
-
(2004)
Proteins: Struct., Funct. Genet
, vol.54
, pp. 116-127
-
-
Yu, H.B.1
Daura, X.2
van Gunsteren, W.F.3
-
112
-
-
0032584783
-
-
Daura, X., Jaun, B., Seebach, D., van Gunsteren, W. F. and Mark, A. E. (1998) J. Mol. Biol., 280, 925-932.
-
(1998)
J. Mol. Biol
, vol.280
, pp. 925-932
-
-
Daura, X.1
Jaun, B.2
Seebach, D.3
van Gunsteren, W.F.4
Mark, A.E.5
-
113
-
-
0033556236
-
-
Daura, X., Gademann, K., Jaun, B., Seebach, D., van Gunsteren, W. F. and Mark, A. E. (1999) Angew. Chem. Int. Ed., 38, 236-240.
-
(1999)
Angew. Chem. Int. Ed
, vol.38
, pp. 236-240
-
-
Daura, X.1
Gademann, K.2
Jaun, B.3
Seebach, D.4
van Gunsteren, W.F.5
Mark, A.E.6
-
116
-
-
23944458073
-
-
Yoshida, K., Yamaguchi, T. and Okamoto, Y. (2005) Chem. Phys. Lett., 412, 280-284.
-
(2005)
Chem. Phys. Lett
, vol.412
, pp. 280-284
-
-
Yoshida, K.1
Yamaguchi, T.2
Okamoto, Y.3
-
117
-
-
0037014684
-
-
Fioroni, M., Diaz, M. D., Burger, K. and Berger, S. (2002) J. Am. Chem. Soc., 124, 7737-7744.
-
(2002)
J. Am. Chem. Soc
, vol.124
, pp. 7737-7744
-
-
Fioroni, M.1
Diaz, M.D.2
Burger, K.3
Berger, S.4
-
118
-
-
0037014684
-
-
Fioroni, M., Diaz, M. D., Burger, K. and Berger, S. (2002) J. Am. Chem. Soc., 124, 7737-7744.
-
(2002)
J. Am. Chem. Soc
, vol.124
, pp. 7737-7744
-
-
Fioroni, M.1
Diaz, M.D.2
Burger, K.3
Berger, S.4
-
120
-
-
0033595582
-
-
Hong, D.-P., Hoshino, M., Kuboi, R. and Goto, Y. (1999) J. Am. Chem Soc., 121, 8427-8433.
-
(1999)
J. Am. Chem Soc
, vol.121
, pp. 8427-8433
-
-
Hong, D.-P.1
Hoshino, M.2
Kuboi, R.3
Goto, Y.4
-
121
-
-
0029996091
-
-
Wood, S. J., Maleeff, B., Hart, T. and Wetzel, R. (1996) J. Mol. Biol., 256, 870-877.
-
(1996)
J. Mol. Biol
, vol.256
, pp. 870-877
-
-
Wood, S.J.1
Maleeff, B.2
Hart, T.3
Wetzel, R.4
-
125
-
-
0034688430
-
-
Schaal, H., Häber, T. and Suhm, M. A. (2000) J. Phys. Chem. A, 104, 265-274.
-
(2000)
J. Phys. Chem. A
, vol.104
, pp. 265-274
-
-
Schaal, H.1
Häber, T.2
Suhm, M.A.3
-
126
-
-
0011345933
-
-
Mizutani, Y., Kamogawa, K., Kitagawa, T., Shimizu, A., Taniguchi, Y. and Nakanishi, K. (1991) J. Phys. Chem., 95, 1790-1794.
-
(1991)
J. Phys. Chem
, vol.95
, pp. 1790-1794
-
-
Mizutani, Y.1
Kamogawa, K.2
Kitagawa, T.3
Shimizu, A.4
Taniguchi, Y.5
Nakanishi, K.6
-
127
-
-
0142026572
-
-
Yoshida, K., Yamaguchi, T., Adachi, T., Otomo, T., Matsuo, D., Takamuku, T. and Nishi, N. (2003) J. Chem. Phys., 119, 6132-6142.
-
(2003)
J. Chem. Phys
, vol.119
, pp. 6132-6142
-
-
Yoshida, K.1
Yamaguchi, T.2
Adachi, T.3
Otomo, T.4
Matsuo, D.5
Takamuku, T.6
Nishi, N.7
-
129
-
-
0037006872
-
-
Diaz, M. D., Fioroni, M., Burger, K. and Berger, S. (2002) Chem. Eur. J., 8, 1663-1669.
-
(2002)
Chem. Eur. J
, vol.8
, pp. 1663-1669
-
-
Diaz, M.D.1
Fioroni, M.2
Burger, K.3
Berger, S.4
-
130
-
-
2142653052
-
-
Gerig, J. T. (2004) Biophys. J., 86, 3166-3175.
-
(2004)
Biophys. J
, vol.86
, pp. 3166-3175
-
-
Gerig, J.T.1
-
132
-
-
0035829930
-
-
Fioroni, M., Burger, K., Mark, A. E. and Roccatano, D. (2001) J. Phys. Chem. B, 105, 10967-10975.
-
(2001)
J. Phys. Chem. B
, vol.105
, pp. 10967-10975
-
-
Fioroni, M.1
Burger, K.2
Mark, A.E.3
Roccatano, D.4
-
133
-
-
0032536194
-
-
Hirota, N., Mizuno, K. and Goto, Y. (1998) J. Mol. Biol., 275, 365-368.
-
(1998)
J. Mol. Biol
, vol.275
, pp. 365-368
-
-
Hirota, N.1
Mizuno, K.2
Goto, Y.3
-
134
-
-
0031042309
-
-
Hirota, N., Mizuno, K. and Goto, Y. (1997) Protein Sci., 6, 416-421.
-
(1997)
Protein Sci
, vol.6
, pp. 416-421
-
-
Hirota, N.1
Mizuno, K.2
Goto, Y.3
-
135
-
-
33644542740
-
-
Villa, A., Mark, A. E., Saracino, G. A. A., Cosentino, U., Pitea, D., Moro, G. and Salmona, M. (2006) J. Phys. Chem. B, 110, 1423-1428.
-
(2006)
J. Phys. Chem. B
, vol.110
, pp. 1423-1428
-
-
Villa, A.1
Mark, A.E.2
Saracino, G.A.A.3
Cosentino, U.4
Pitea, D.5
Moro, G.6
Salmona, M.7
-
136
-
-
34249818803
-
-
Kamiya, N., Mitomo, D., Shea, J.-E. and Higo, J. (2007) J. Phys. Chem. B, 111, 5351-5356.
-
(2007)
J. Phys. Chem. B
, vol.111
, pp. 5351-5356
-
-
Kamiya, N.1
Mitomo, D.2
Shea, J.-E.3
Higo, J.4
-
138
-
-
10844270511
-
-
Flöck., D., Daidone, I. and Di Nola, A. (2004) Biopolymers, 75, 491-496.
-
(2004)
Biopolymers
, vol.75
, pp. 491-496
-
-
Flöck, D.1
Daidone, I.2
Di Nola, A.3
-
139
-
-
0842278671
-
-
Wong, T., Arnold, F. and Schwaneberg, U. (2004) Biotechnol. Bioeng., 85, 351-358.
-
(2004)
Biotechnol. Bioeng
, vol.85
, pp. 351-358
-
-
Wong, T.1
Arnold, F.2
Schwaneberg, U.3
-
140
-
-
0036558027
-
-
Munro, A., Leys, D., McLean, K., Marshall, K., Ost, T., Daff, S., Miles, C., Chapman, S., Lysek, D., Moser, C., Page, C. and Dutton, P. (2002) Trends Biochem. Sci., 27, 250-257.
-
(2002)
Trends Biochem. Sci
, vol.27
, pp. 250-257
-
-
Munro, A.1
Leys, D.2
McLean, K.3
Marshall, K.4
Ost, T.5
Daff, S.6
Miles, C.7
Chapman, S.8
Lysek, D.9
Moser, C.10
Page, C.11
Dutton, P.12
-
141
-
-
0034634393
-
-
Luedemann, S. K., Lounnas, V. and Wade, R. C. (2000) J. Mol. Biol., 303, 797-811.
-
(2000)
J. Mol. Biol
, vol.303
, pp. 797-811
-
-
Luedemann, S.K.1
Lounnas, V.2
Wade, R.C.3
-
142
-
-
0029116625
-
-
Zhang, H., Kaneko, K., Nguyen, J. T., Livshits, T. L., Baldwin, M. A., Cohen, F. E., James, T. L. and Prusiner, S. B. (1995) J. Mol. Biol., 250, 514-526.
-
(1995)
J. Mol. Biol
, vol.250
, pp. 514-526
-
-
Zhang, H.1
Kaneko, K.2
Nguyen, J.T.3
Livshits, T.L.4
Baldwin, M.A.5
Cohen, F.E.6
James, T.L.7
Prusiner, S.B.8
-
143
-
-
33646588326
-
-
Ravindranathan, K. P., Gallicchio, E., Friesner, R. A., McDermott, A. E. and Levy, R. M. (2006) J. Am. Chem. Soc., 128, 5786-5791.
-
(2006)
J. Am. Chem. Soc
, vol.128
, pp. 5786-5791
-
-
Ravindranathan, K.P.1
Gallicchio, E.2
Friesner, R.A.3
McDermott, A.E.4
Levy, R.M.5
-
145
-
-
0037117562
-
-
Winn, P. J., Luedemann, S. K., Gauges, R., Lounnas, V. and Wade, R. C. (2002) Proc. Natl. Acad. Sci. USA, 99, 5361-5366.
-
(2002)
Proc. Natl. Acad. Sci. USA
, vol.99
, pp. 5361-5366
-
-
Winn, P.J.1
Luedemann, S.K.2
Gauges, R.3
Lounnas, V.4
Wade, R.C.5
-
149
-
-
11344259541
-
-
Smith, L. J., Jones, R. M. and van Gunsteren, W. F. (2005) Proteins: Struct. Funct. Bioinform., 58, 439-449.
-
(2005)
Proteins: Struct. Funct. Bioinform
, vol.58
, pp. 439-449
-
-
Smith, L.J.1
Jones, R.M.2
van Gunsteren, W.F.3
-
150
-
-
23244452958
-
-
Caballero-Herrera, A., Nordstrand, K., Berndt, K. D. and Nilsson, L. ( 2005) Biophys. J., 89, 842-857.
-
(2005)
Biophys. J
, vol.89
, pp. 842-857
-
-
Caballero-Herrera, A.1
Nordstrand, K.2
Berndt, K.D.3
Nilsson, L.4
-
151
-
-
1442300062
-
-
Lins, R. D., Pereira, C. S. and Hünenberger, H. (2004) Proteins: Struct. Funct. Bioinform., 55, 177-186.
-
(2004)
Proteins: Struct. Funct. Bioinform
, vol.55
, pp. 177-186
-
-
Lins, R.D.1
Pereira, C.S.2
Hünenberger, H.3
-
152
-
-
23244434654
-
-
Scharnagl, C., Reif, M. and Friedrich, J. (2005) Biophys. J., 89, 64-75.
-
(2005)
Biophys. J
, vol.89
, pp. 64-75
-
-
Scharnagl, C.1
Reif, M.2
Friedrich, J.3
-
153
-
-
0033988125
-
-
Vitkup, D., Ringe, D., Petsko, G. A. and Karplus, M. (2000) Nat. Struct. Biol., 7, 34-38.
-
(2000)
Nat. Struct. Biol
, vol.7
, pp. 34-38
-
-
Vitkup, D.1
Ringe, D.2
Petsko, G.A.3
Karplus, M.4
-
155
-
-
33846058970
-
-
Curtis, J. E., Dirama, T. E., Carri, G. A. and Tobias, D. J. (2006) J. Phys. Chem. B, 110, 22953-22956.
-
(2006)
J. Phys. Chem. B
, vol.110
, pp. 22953-22956
-
-
Curtis, J.E.1
Dirama, T.E.2
Carri, G.A.3
Tobias, D.J.4
-
156
-
-
20144383293
-
-
Kang, N. S., Yu, J. Y. and Jhon, M. S. (1995) J. Mol. Struct.- Theochem., 355, 201-209.
-
(1995)
J. Mol. Struct.- Theochem
, vol.355
, pp. 201-209
-
-
Kang, N.S.1
Yu, J.Y.2
Jhon, M.S.3
-
159
-
-
5444232817
-
-
Bennion, B. J., DeMarco, M. L. and Daggett, V. (2004) Biochemistry, 43, 12955-12963.
-
(2004)
Biochemistry
, vol.43
, pp. 12955-12963
-
-
Bennion, B.J.1
DeMarco, M.L.2
Daggett, V.3
-
160
-
-
33749365298
-
-
Street, T. O., Bolen, D. W. and Rose, G. D. (2006) Proc. Natl. Acad. Sci. USA, 103, 13997-14002.
-
(2006)
Proc. Natl. Acad. Sci. USA
, vol.103
, pp. 13997-14002
-
-
Street, T.O.1
Bolen, D.W.2
Rose, G.D.3
-
161
-
-
0037333337
-
-
van Rantwijk, F., Madeira Lau, R. and Sheldon, R. A. (2003) Trends Biotechnol., 21, 131-138.
-
(2003)
Trends Biotechnol
, vol.21
, pp. 131-138
-
-
van Rantwijk, F.1
Madeira Lau, R.2
Sheldon, R.A.3
-
162
-
-
33746915678
-
-
Micaelo, N. M., Baptista, A. M. and Soares, C. M. (2006) J. Phys. Chem. B, 110, 14444-14451.
-
(2006)
J. Phys. Chem. B
, vol.110
, pp. 14444-14451
-
-
Micaelo, N.M.1
Baptista, A.M.2
Soares, C.M.3
-
163
-
-
33644770604
-
-
Cadera, C., Zhao, Q., Snurr, R. Q. and Maginn, E. J. (2006) J. Phys. Chem. B, 110, 2821-2832.
-
(2006)
J. Phys. Chem. B
, vol.110
, pp. 2821-2832
-
-
Cadera, C.1
Zhao, Q.2
Snurr, R.Q.3
Maginn, E.J.4
-
164
-
-
33644583735
-
-
Liu, Z. P., Wu, X. P. and Wang, W. C. (2006) Phys. Chem. Chem. Phys., 8, 1096-1104.
-
(2006)
Phys. Chem. Chem. Phys
, vol.8
, pp. 1096-1104
-
-
Liu, Z.P.1
Wu, X.P.2
Wang, W.C.3
-
165
-
-
1342344772
-
-
Lopes, J. N. C., Deschamps, J. and Padua, A. A. H. (2004) J. Chem. Phys. B, 108, 2038-2047.
-
(2004)
J. Chem. Phys. B
, vol.108
, pp. 2038-2047
-
-
Lopes, J.N.C.1
Deschamps, J.2
Padua, A.A.H.3
-
166
-
-
14044276310
-
-
Baron, R., Bakowies, D. and Van Gunsteren, W. F. (2005) J. Pep. Sci., 11, 74-84.
-
(2005)
J. Pep. Sci
, vol.11
, pp. 74-84
-
-
Baron, R.1
Bakowies, D.2
Van Gunsteren, W.F.3
-
167
-
-
25444493142
-
-
Elmer, S. P., Park, S. and Pande, V. S. (2005) J. Chem. Phys., 123, 114902-114914.
-
(2005)
J. Chem. Phys
, vol.123
, pp. 114902-114914
-
-
Elmer, S.P.1
Park, S.2
Pande, V.S.3
-
170
-
-
0032790341
-
-
Chipot, C., Maigret, B. and Pohorille, A. (1999) Proteins: Struct. Funct. Genet., 36, 383-399.
-
(1999)
Proteins: Struct. Funct. Genet
, vol.36
, pp. 383-399
-
-
Chipot, C.1
Maigret, B.2
Pohorille, A.3
-
171
-
-
0032991267
-
-
Efremov, R. G., Nolde, D. E., Vergoten, G. and Arseniev, A. S. (1999) Biophys. J., 76, 2460-2471.
-
(1999)
Biophys. J
, vol.76
, pp. 2460-2471
-
-
Efremov, R.G.1
Nolde, D.E.2
Vergoten, G.3
Arseniev, A.S.4
-
174
-
-
0023769808
-
-
Dauber-Osguthorpe, P., Roberts, V. A., Osguthorpe, D. J., Wolff, J., Genest, M. and Hagler, A. T. (1988) Proteins: Struct. Funct. Genet., 4, 31-47.
-
(1988)
Proteins: Struct. Funct. Genet
, vol.4
, pp. 31-47
-
-
Dauber-Osguthorpe, P.1
Roberts, V.A.2
Osguthorpe, D.J.3
Wolff, J.4
Genest, M.5
Hagler, A.T.6
-
176
-
-
0034806777
-
-
Daura, X., Gademann, K., Schäffer, H., Jaun, B., Seebach, D. and van Gunsteren, W. F. (2001) J. Am. Chem Soc., 123, 2393-2404.
-
(2001)
J. Am. Chem Soc
, vol.123
, pp. 2393-2404
-
-
Daura, X.1
Gademann, K.2
Schäffer, H.3
Jaun, B.4
Seebach, D.5
van Gunsteren, W.F.6
-
177
-
-
0032800402
-
-
Daura, X., Antes, I., van Gunsteren, W. F., Theil, W. and Mark, A. E. (1999) Proteins: Struct. Funct. Genet., 36, 542-555.
-
(1999)
Proteins: Struct. Funct. Genet
, vol.36
, pp. 542-555
-
-
Daura, X.1
Antes, I.2
van Gunsteren, W.F.3
Theil, W.4
Mark, A.E.5
-
178
-
-
0033557181
-
-
Daura, X., van Gunsteren, W. F. and Mark, A. E. (1999) Proteins: Struct. Funct. Genet., 34, 269-280.
-
(1999)
Proteins: Struct. Funct. Genet
, vol.34
, pp. 269-280
-
-
Daura, X.1
van Gunsteren, W.F.2
Mark, A.E.3
-
179
-
-
0000341366
-
-
De Loof, H., Nilsson, L. and Rigler, R. (1992) J. Am. Chem. Soc., 114, 4028-4035.
-
(1992)
J. Am. Chem. Soc
, vol.114
, pp. 4028-4035
-
-
De Loof, H.1
Nilsson, L.2
Rigler, R.3
-
181
-
-
33646005837
-
-
Johnston, J. M., Cook, G. A., Tomich, J. M. and Sansom, M. S. P. ( 2006) Biophys. J., 90, 1855-1864.
-
(2006)
Biophys. J
, vol.90
, pp. 1855-1864
-
-
Johnston, J.M.1
Cook, G.A.2
Tomich, J.M.3
Sansom, M.S.P.4
-
183
-
-
0037343333
-
-
Tobi, D., Elber, R. and Thirumalai, D. (2003) Biopolymers, 68, 359-369.
-
(2003)
Biopolymers
, vol.68
, pp. 359-369
-
-
Tobi, D.1
Elber, R.2
Thirumalai, D.3
-
184
-
-
6944241424
-
-
Klimov, D. R., Straub, J. E. and Thirumalai, D. (2004) Proc. Natl. Acad. Sci. USA, 101, 14760-14765.
-
(2004)
Proc. Natl. Acad. Sci. USA
, vol.101
, pp. 14760-14765
-
-
Klimov, D.R.1
Straub, J.E.2
Thirumalai, D.3
-
185
-
-
0035865543
-
-
Zhang, Z., Zhu, Y. and Shi, Y. (2001) Biophys. Chem., 89, 145-162.
-
(2001)
Biophys. Chem
, vol.89
, pp. 145-162
-
-
Zhang, Z.1
Zhu, Y.2
Shi, Y.3
-
186
-
-
34248352704
-
-
Knecht, V., Mohwald, H. and Lipowsky, R. (2007) J. Phys. Chem. B, 111, 4161-4170.
-
(2007)
J. Phys. Chem. B
, vol.111
, pp. 4161-4170
-
-
Knecht, V.1
Mohwald, H.2
Lipowsky, R.3
-
187
-
-
0029633167
-
-
Levitt, M., Hirshberg, M., Sharon, R. and Daggett, V. (1995) Comp. Phys. Commun., 91, 215-231.
-
(1995)
Comp. Phys. Commun
, vol.91
, pp. 215-231
-
-
Levitt, M.1
Hirshberg, M.2
Sharon, R.3
Daggett, V.4
-
190
-
-
0030939289
-
-
Tirado-Rives, J., Orozco, M. and Jorgensen, W. L. (1997) Biochemistry, 36, 7313-7329.
-
(1997)
Biochemistry
, vol.36
, pp. 7313-7329
-
-
Tirado-Rives, J.1
Orozco, M.2
Jorgensen, W.L.3
-
192
-
-
0033553105
-
-
Colombo, G., Toba, S. and Metz, K. M. (1999) J. Am. Chem. Soc., 121, 3486-3493.
-
(1999)
J. Am. Chem. Soc
, vol.121
, pp. 3486-3493
-
-
Colombo, G.1
Toba, S.2
Metz, K.M.3
-
194
-
-
0035144443
-
-
Cottone, G., Cordone, L. and Ciccotti, G. (2001) Biophys. J., 80, 931-937.
-
(2001)
Biophys. J
, vol.80
, pp. 931-937
-
-
Cottone, G.1
Cordone, L.2
Ciccotti, G.3
-
195
-
-
26644435522
-
-
Roccatano, D., Sbardella, G., Aschi, M., Amicosante, G., Bossa, C., Di Nola, A. and Mazza, F. (2005) J. Comp.-Aided Mol. Des., 19, 329-340.
-
(2005)
J. Comp.-Aided Mol. Des
, vol.19
, pp. 329-340
-
-
Roccatano, D.1
Sbardella, G.2
Aschi, M.3
Amicosante, G.4
Bossa, C.5
Di Nola, A.6
Mazza, F.7
|