Water dynamical anomalies evidenced by molecular-dynamics simulations at the solvent-protein interface

Physical Review E - Statistical Physics, Plasmas, Fluids, and Related Interdisciplinary Topics

Volumn 57, Issue 3, 1998, Pages 3315-3325

  Rocchi, Claudia ^a   Bizzarri, Anna Rita ^a   Cannistraro, Salvatore ^a,b  

^a INFM   (Italy)

^b UNIVERSITY OF TUSCIA   (Italy)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 0001030002     PISSN: 1063651X     EISSN: None     Source Type: Journal    
DOI: 10.1103/PhysRevE.57.3315     Document Type: Article

References (68)

1. Protein-Solvent Interactions, edited by R. B. Gregory (Dekker, New York, 1995).
2. V. Lounnas, B. M. Pettitt, and G. N. Phillips, Jr., Biophys. J. 66, 601 (1994).BIOJAU
3. W. Doster, A. Bachleitner, R. Dunau, M. Hiebl, and E. Lüscher, Biophys. J. 50, 213 (1986).BIOJAU
4. P. L. Poole and J. L. Finney, Biopolymers 22, 255 (1983).BIPMAA
5. H. Frauenfelder, F. Parak, and R. D. Young, Annu. Rev. Biophys. Biophys. Chem. 17, 451 (1988).ARBCEY
6. R. Elber and M. Karplus, Science 235, 318 (1987).SCIEAS
7. R. D. Young, H. Frauenfelder, J. B. Johnson, D. C. Lamb, G. U. Nienhaus, R. Philipp, and R. Scholl, Chem. Phys. 158, 315 (1991).CMPHC2
8. A. Ansari, J. Berendzen, S. F. Bowne, H. Frauenfelder, I. E. T. Iben, T. B. Sauke, E. Shyamsunder, and R. D. Young, Proc. Natl. Acad. Sci. USA 82, 5000 (1985).PNASA6
9. J. L. Green, J. Fan, and C. A. Angell, J. Phys. Chem. 98, 13 780 (1994).JPCHAX
10. I. D. Kuntz and W. Kauzmann, Adv. Protein Chem. 28, 239 (1974).
11. J. L. Rupley, E. Gratton, and G. Careri, Trends Biochem. Sci. 8, 18 (1983).TBSCDB
12. P. J. Steinbach and B. R. Brooks, Proc. Natl. Acad. Sci. USA 93, 55 (1996).PNASA6
13. I. E. T. Iben, D. Braunstein, W. Doster, H. Frauenfelder, M. K. Hong, J. B. Johnson, S. Luck, P. Ormos, A. Schulte, P. J. Steinbach, A. H. Xie, and R. D. Young, Phys. Rev. Lett. 62, 1916 (1989).PRLTAO
14. C. A. Angell, Science 267, 1924 (1995).SCIEAS
15. R. Abseher, H. Schreiber, and O. Steinhauser, Proteins: Struct. Funct. Genet. 25, 366 (1996).
16. C. L. Brooks III and M. Karplus, J. Mol. Biol. 208, 159 (1989).JMOBAK
17. G. Sartor and E. Mayer, Biophys. J. 67, 1724 (1994).BIOJAU
18. R. M. Brunne, E. Liepinsh, G. Otting, K. Wüthrich, and W. F. van Gunsteren, J. Mol. Biol. 231, 1040 (1993).JMOBAK
19. A. R. Bizzarri, C. X. Wang, W. Z. Chen, and S. Cannistraro, Chem. Phys. 201, 463 (1995).CMPHC2
20. C. Rocchi, A. R. Bizzarri, and S. Cannistraro, Chem. Phys. 214, 261 (1997).CMPHC2
21. A. E. Garcia and L. Stiller, J. Comput. Chem. 14, 1396 (1993).JCCHDD
22. A. R. Bizzarri and S. Cannistraro, Phys. Rev. E 53, 3040 (1996).PLEEE8
23. A. R. Bizzarri and S. Cannistraro, Europhys. Lett. 37, 201 (1997).EULEEJ
24. M. Levitt and R. Sharon, Proc. Natl. Acad. Sci. USA 85, 7557 (1988).PNASA6
25. A. R. Bizzarri, C. Rocchi, and S. Cannistraro, Chem. Phys. Lett. 263, 559 (1996).CHPLBC
26. M. Settles and W. Doster, Faraday Discuss. R. Soc. of Chem. 103, 269 (1996).
27. A. Blumen, J. Klafter, and G. Zumofen, in Transport and Relaxation in Random Materials, edited by J. Klafter, R. J. Rubin, and M. F. Shlesinger (World Scientific, Singapore, 1985).
28. J. Klafter, G. Zumofen, and A. Blumen, Chem. Phys. 177, 821 (1993).CMPHC2
29. W. F. van Gusteren and H. J. C. Berendsen, Groningen Molecular Simulation (GROMOS) Library Manual (Biomos, Groningen, 1987).
30. H. J. C. Berendsen, J. R. Grigera, and T. P. Straatsma, J. Phys. Chem. 91, 6269 (1987).JPCHAX
31. J. M. Guss, H. D. Bartunik, and H. C. Freman, Acta Crystallogr., Sect. B: Struct. Sci. 48, 790 (1992).ASBSDK
32. A. G. Sykes, Adv. Inorg. Chem. 36, 377 (1991).
33. M. R. Redinbo, T. O. Yeates, and S. Merchant, J. Bioenerg. Biomembr. 26, 49 (1994).
34. H. J. C. Berendsen, J. P. M. Postma, W. F. van Gusteren, A. Di Nola, and J. R. Haak, J. Chem. Phys. 81, 3684 (1984).JCPSA6
35. J. P. Rickaert, G. Ciccotti, and H. J. C. Berendsen, J. Comput. Phys. 23, 327 (1977).JCTPAH
36. C. X. Wang, A. R. Bizzarri, Y. W. Xu, and S. Cannistraro, Chem. Phys. 183, 155 (1994).CMPHC2
37. D. A. Zichi and P. J. Rossky, J. Chem. Phys. 84, 2814 (1986).JCPSA6
38. E. W. Montroll and B. J. West, in Fluctuation Phenomena, edited by E. Montroll and J. L. Lebowitz, Studies in Statistical Mechanics Vol. VII (North-Holland, Amsterdam, 1987).
39. J. W. Haus and K. W. Kehr, Phys. Rep. 150, 263 (1987).PRPLCM
40. D. Chandler, Introduction to Modern Statistical Mechanics (Oxford University Press, Oxford, 1987).
41. J. P. Bouchaud and A. Georges, Phys. Rep. 195, 127 (1990).PRPLCM
42. P. Ahlström, O. Teleman, and B. Jönsson, J. Am. Chem. Soc. 110, 4198 (1988).JACSAT
43. D. S. Hartsough and K. M. Merz, Jr., J. Am. Chem. Soc. 115, 6529 (1993).JACSAT
44. M. Norin, F. Haeffner, K. Hult, and O. Edholm, Biophys. J. 67, 548 (1994).BIOJAU
45. G. Jug, Chem. Phys. Lett. 131, 94 (1986).CHPLBC
46. F. Brugè, E. Parisi, and S. L. Fornili, Chem. Phys. Lett. 250, 443 (1996).CHPLBC
47. R. W. Impey, P. A. Madden, and I. R. McDonald, J. Phys. Chem. 87, 5071 (1983).JPCHAX
48. C. Rocchi, Nuovo Cimento (to be published).
49. R. Kohlrausch, Ann. Phys. (Leipzig) 12, 353 (1847); ANPYA2
50. G. Williams and D. C. Watts, Trans. Faraday Soc. 66, 80 (1870).TFSOA4
51. J. C. Phillips, Rep. Prog. Phys. 59, 1133 (1996).RPPHAG
52. P. Gallo, F. Sciortino, P. Tartaglia, and S. H. Chen, Phys. Rev. Lett. 76, 2730 (1996).PRLTAO
53. U. Balucani, J. P. Brodholt, and R. Vallauri, J. Phys.: Condens. Matter 8, 6145 (1996).JCOMEL
54. P. Lévy, Calcul des Probabilities (Gauthier-Villars, Paris, 1925).
55. B. B. Mandelbrot, The Fractal Geometry of Nature (Freeman, San Francisco, 1982).
56. H. Scher and E. W. Montroll, Phys. Rev. B 12, 2455 (1975).PLRBAQ
57. M. F. Shlesinger, Annu. Rev. Phys. Chem. 39, 269 (1988).ARPLAP
58. G. Zumofen and J. Klafter, Phys. Rev. E 47, 851 (1993).PLEEE8
59. P. Pfeifer, U. Welz, and H. Wippermann, Chem. Phys. Lett. 113, 535 (1985).CHPLBC
60. C. D. Zachmann, S. M. Kast, A. Sariban, and J. Brickmann, J. Comput. Chem. 14, 1290 (1993).JCCHDD
61. J. Klafter, G. Zumofen, and A. Blumen, J. Phys. A 124, 991 (1991).JPHAC5
62. S. Havlin and D. Ben Havraham, Adv. Phys. 36, 695 (1987).ADPHAH
63. S. Alexander and R. Orbach, J. Phys. (France) Lett. 43, 625 (1982).JPSLBO
64. R. Bettin, R. Mannella, B. J. West, and P. Grigolini, Phys. Rev. E 51, 212 (1995).PLEEE8
65. F. H. Stillinger, Science 267, 1935 (1995).SCIEAS
66. M. F. Shlesinger, J. Stat. Phys. 10, 421 (1974).JSTPBS
67. J. Klafter, A. Blumen, and M. F. Shlesinger, Phys. Rev. A 35, 3081 (1987).PLRAAN
68. A. Szabo, K. Schulten, and Z. Schulten, J. Chem. Phys. 72, 4350 (1980). JCPSA6