-
1
-
-
0000635454
-
Thiolation of uridine carbon-2 restricts the motional dynamics of the transfer RNA wobble position nucleoside
-
Agris, P.F., Sierzputowska-Gracz, H., Smith, W., Malkiewicz, A., Sochacka, E., and Nawrot, B. 1992. Thiolation of uridine carbon-2 restricts the motional dynamics of the transfer RNA wobble position nucleoside. J. Am. Chem. Soc. 114: 2652-2656.
-
(1992)
J. Am. Chem. Soc
, vol.114
, pp. 2652-2656
-
-
Agris, P.F.1
Sierzputowska-Gracz, H.2
Smith, W.3
Malkiewicz, A.4
Sochacka, E.5
Nawrot, B.6
-
2
-
-
0028915734
-
Site-selected introduction of modified purine and pyrimidine ribonucleosides into RNA by automated phosphoramidite chemistry
-
Agris, P.F., Malkiewicz, A., Kraszewski, A., Everett, K., Nawrot, B., Sochacka, E., Jankowska, J., and Guenther, R. 1995. Site-selected introduction of modified purine and pyrimidine ribonucleosides into RNA by automated phosphoramidite chemistry. Biochimie 77: 125-134.
-
(1995)
Biochimie
, vol.77
, pp. 125-134
-
-
Agris, P.F.1
Malkiewicz, A.2
Kraszewski, A.3
Everett, K.4
Nawrot, B.5
Sochacka, E.6
Jankowska, J.7
Guenther, R.8
-
3
-
-
0037440005
-
Tolerance of mutations and chemical modifications in a siRNA
-
Amarzguioui, M., Holen, T., Babaie, E., and Prydz, H. 2003. Tolerance of mutations and chemical modifications in a siRNA. Nucleic Acids Res. 31: 589-595.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 589-595
-
-
Amarzguioui, M.1
Holen, T.2
Babaie, E.3
Prydz, H.4
-
4
-
-
0038385504
-
RNA interference in mammalian cells by chemically-modified RNA
-
Braasch, D.A., Jensen, S., Liu, Y., Kaur, K., Arar, K., White, M.A., and Corey, D.R. 2003. RNA interference in mammalian cells by chemically-modified RNA. Biochemistry 42: 7967-7975.
-
(2003)
Biochemistry
, vol.42
, pp. 7967-7975
-
-
Braasch, D.A.1
Jensen, S.2
Liu, Y.3
Kaur, K.4
Arar, K.5
White, M.A.6
Corey, D.R.7
-
5
-
-
0008060992
-
Methods in molecular biology
-
ed. S. Agrawal, Humana Press, Totowa, N.J
-
Breslauer, K.J. 1994. Methods in molecular biology. In Protocols for oligonucleotide conjugates (ed. S. Agrawal), Vol. 26, pp. 437-472. Humana Press, Totowa, N.J.
-
(1994)
Protocols for oligonucleotide conjugates
, vol.26
, pp. 437-472
-
-
Breslauer, K.J.1
-
6
-
-
0002063670
-
Modern machine-aided methods of oligodeoxy-ribonucleotide synthesis
-
ed. F. Eckstein, pp, IRL Press, Oxford, UK
-
Brown, T. and Brown, D.J.S. 1991. Modern machine-aided methods of oligodeoxy-ribonucleotide synthesis. In Oligonucleotides and Analogues: A Practical Approach (ed. F. Eckstein), pp. 1-24. IRL Press, Oxford, UK.
-
(1991)
Oligonucleotides and Analogues: A Practical Approach
, pp. 1-24
-
-
Brown, T.1
Brown, D.J.S.2
-
7
-
-
0022144562
-
Gene synthesis machines: DNA chemistry and its uses
-
Caruthers, M.H. 1985. Gene synthesis machines: DNA chemistry and its uses. Science 230: 281-285.
-
(1985)
Science
, vol.230
, pp. 281-285
-
-
Caruthers, M.H.1
-
8
-
-
0024436646
-
Solid phase synthesis of the 5′-half of the initiator t-RNA from B. subtilis
-
Chaix, C., Duplaa, A.M., Molko, D., and Teoule, R. 1989. Solid phase synthesis of the 5′-half of the initiator t-RNA from B. subtilis. Nucleic Acids Res. 17: 7381-7393.
-
(1989)
Nucleic Acids Res
, vol.17
, pp. 7381-7393
-
-
Chaix, C.1
Duplaa, A.M.2
Molko, D.3
Teoule, R.4
-
9
-
-
0036752785
-
RNAi in human cells: Basic structural and functional features of small interfering RNA
-
Chiu, Y.L. and Rana, T.M. 2002. RNAi in human cells: Basic structural and functional features of small interfering RNA. Mol. Cell 10: 549-561.
-
(2002)
Mol. Cell
, vol.10
, pp. 549-561
-
-
Chiu, Y.L.1
Rana, T.M.2
-
10
-
-
0041331496
-
siRNA function in RNAi: A chemical modification analysis
-
Chiu, Y.L. and Rana, T.M. 2003. siRNA function in RNAi: A chemical modification analysis. RNA 9: 1034-1048.
-
(2003)
RNA
, vol.9
, pp. 1034-1048
-
-
Chiu, Y.L.1
Rana, T.M.2
-
11
-
-
23144458622
-
Dissecting RNA-interference pathway with small molecules
-
Chiu, Y.L., Dinesh, C.U., Chu, C.Y., Ali, A., Brown, K.M., Cao, H., and Rana, T.M. 2005. Dissecting RNA-interference pathway with small molecules. Chem. Biol. 12: 643-648.
-
(2005)
Chem. Biol
, vol.12
, pp. 643-648
-
-
Chiu, Y.L.1
Dinesh, C.U.2
Chu, C.Y.3
Ali, A.4
Brown, K.M.5
Cao, H.6
Rana, T.M.7
-
12
-
-
0029077840
-
Characterization of fully 2′-modified oligoribonucleotide hetero- and homoduplex hybridization and nuclease sensitivity
-
Cummins, L.L., Owen, S.R., Risen, L.M., Lesnik, E.A., Freier, S.M., McGee, D., Guinosso, C.J., and Cook, P.D. 1995. Characterization of fully 2′-modified oligoribonucleotide hetero- and homoduplex hybridization and nuclease sensitivity. Nucleic Acids Res. 23: 2019-2024.
-
(1995)
Nucleic Acids Res
, vol.23
, pp. 2019-2024
-
-
Cummins, L.L.1
Owen, S.R.2
Risen, L.M.3
Lesnik, E.A.4
Freier, S.M.5
McGee, D.6
Guinosso, C.J.7
Cook, P.D.8
-
13
-
-
0038606999
-
Structural variations and stabilising modifications of synthetic siRNAs in mammalian cells
-
Czauderna, F., Fechtner, M., Dames, S., Aygun, H., Klippel, A., Pronk, G.J., Giese, K., and Kaufmann, J. 2003. Structural variations and stabilising modifications of synthetic siRNAs in mammalian cells. Nucleic Acids Res. 31: 2705-2716.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 2705-2716
-
-
Czauderna, F.1
Fechtner, M.2
Dames, S.3
Aygun, H.4
Klippel, A.5
Pronk, G.J.6
Giese, K.7
Kaufmann, J.8
-
14
-
-
0029877358
-
Conformational flexibility in RNA: The role of dihydrouridine
-
Dalluge, J.J., Hashizume, T., Sopchik, A.E., McCloskey, J.A., and Davis, D.R. 1996. Conformational flexibility in RNA: The role of dihydrouridine. Nucleic Acids Res. 24: 1073-1079.
-
(1996)
Nucleic Acids Res
, vol.24
, pp. 1073-1079
-
-
Dalluge, J.J.1
Hashizume, T.2
Sopchik, A.E.3
McCloskey, J.A.4
Davis, D.R.5
-
15
-
-
33644860608
-
Improving RNA interference in mammalian cells by 4′-thio-modified small interfering RNA (siRNA): Effect on siRNA activity and nuclease stability when used in combination with 2′-O-alkyl modifications
-
Dande, P., Prakash, T.P., Sioufi, N., Gaus, H., Jarres, R., Berdeja, A., Swayze, E.E., Griffey, R.H., and Bhat, B.P. 2006. Improving RNA interference in mammalian cells by 4′-thio-modified small interfering RNA (siRNA): Effect on siRNA activity and nuclease stability when used in combination with 2′-O-alkyl modifications. J. Med. Chem. 49: 1624-1634.
-
(2006)
J. Med. Chem
, vol.49
, pp. 1624-1634
-
-
Dande, P.1
Prakash, T.P.2
Sioufi, N.3
Gaus, H.4
Jarres, R.5
Berdeja, A.6
Swayze, E.E.7
Griffey, R.H.8
Bhat, B.P.9
-
16
-
-
0002841715
-
Biophysical and conformational properties of modified nucleosides in RNA (magnetic resonance studies)
-
eds. H. Grosjean and B. Benne, pp, ASM Press, Washington, DC
-
Davis, D. 1998. Biophysical and conformational properties of modified nucleosides in RNA (magnetic resonance studies). In Modification and editing of RNA (eds. H. Grosjean and B. Benne), pp. 85-102. ASM Press, Washington, DC.
-
(1998)
Modification and editing of RNA
, pp. 85-102
-
-
Davis, D.1
-
17
-
-
0031861474
-
An RNA model system for investigation of pseudouridine stabilization of the codonanticodon interaction in tRNALys, tRNAHis, and tRNATyr
-
Davis, D.R., Veltri, C.A., and Nielsen, L. 1998. An RNA model system for investigation of pseudouridine stabilization of the codonanticodon interaction in tRNALys, tRNAHis, and tRNATyr. J. Biomol. Struct. Dyn. 15: 1121-1132.
-
(1998)
J. Biomol. Struct. Dyn
, vol.15
, pp. 1121-1132
-
-
Davis, D.R.1
Veltri, C.A.2
Nielsen, L.3
-
18
-
-
24944511501
-
Stabilizing contributions of sulfur-modified nucleotides: Crystal structure of a DNA duplex with 2′-O-[2-(methoxy)ethyl]-2- thiothymidines
-
Diop-Frimpong, B., Prakash, T.P., Rajeev, K.G., Manoharan, M., and Egli, M. 2005. Stabilizing contributions of sulfur-modified nucleotides: Crystal structure of a DNA duplex with 2′-O-[2-(methoxy)ethyl]-2- thiothymidines. Nucleic Acids Res. 33: 5297-5307.
-
(2005)
Nucleic Acids Res
, vol.33
, pp. 5297-5307
-
-
Diop-Frimpong, B.1
Prakash, T.P.2
Rajeev, K.G.3
Manoharan, M.4
Egli, M.5
-
19
-
-
33645533269
-
Improvements in siRNA properties mediated by 2′-deoxy-2′-fluoro-β-D-arabinonucleic acid (FANA)
-
Dowler, T., Bergeron, D., Tedeschi, A.L., Paquet, L., Ferrari, N., and Damha, M.J. 2006. Improvements in siRNA properties mediated by 2′-deoxy-2′-fluoro-β-D-arabinonucleic acid (FANA). Nucleic Acids Res. 34: 1669-1675.
-
(2006)
Nucleic Acids Res
, vol.34
, pp. 1669-1675
-
-
Dowler, T.1
Bergeron, D.2
Tedeschi, A.L.3
Paquet, L.4
Ferrari, N.5
Damha, M.J.6
-
20
-
-
15044358407
-
A systematic analysis of the silencing effects of an active siRNA at all single-nucleotide mismatched target sites
-
Du, Q., Thonberg, H., Wang, J., Wahlestedt, C., and Liang, Z. 2005. A systematic analysis of the silencing effects of an active siRNA at all single-nucleotide mismatched target sites. Nucleic Acids Res. 33: 1671-1677.
-
(2005)
Nucleic Acids Res
, vol.33
, pp. 1671-1677
-
-
Du, Q.1
Thonberg, H.2
Wang, J.3
Wahlestedt, C.4
Liang, Z.5
-
21
-
-
0035942736
-
Duplexes of 21-nucleotide RNAs mediate RNA interference in cultured mammalian cells
-
Elbashir, S.M., Harborth, J., Lendeckel, W., Yalcin, A., Weber, K., and Tuschl, T. 2001a. Duplexes of 21-nucleotide RNAs mediate RNA interference in cultured mammalian cells. Nature 411: 494-498.
-
(2001)
Nature
, vol.411
, pp. 494-498
-
-
Elbashir, S.M.1
Harborth, J.2
Lendeckel, W.3
Yalcin, A.4
Weber, K.5
Tuschl, T.6
-
22
-
-
0035863097
-
RNA interference is mediated by 21- and 22-nucleotide RNAs
-
Elbashir, S., Lendeckel, W., and Tuschl, T. 2001b. RNA interference is mediated by 21- and 22-nucleotide RNAs. Genes & Dev. 15: 188-200.
-
(2001)
Genes & Dev
, vol.15
, pp. 188-200
-
-
Elbashir, S.1
Lendeckel, W.2
Tuschl, T.3
-
23
-
-
0035803583
-
Functional anatomy of siRNAs for mediating efficient RNAi in Drosophila melanogaster embryo lysate
-
Elbashir, S.M., Martinez, J., Patkaniowska, A., Lendecel, W., and Tuschl, T. 2001c. Functional anatomy of siRNAs for mediating efficient RNAi in Drosophila melanogaster embryo lysate. EMBO J. 20: 6877-6888.
-
(2001)
EMBO J
, vol.20
, pp. 6877-6888
-
-
Elbashir, S.M.1
Martinez, J.2
Patkaniowska, A.3
Lendecel, W.4
Tuschl, T.5
-
24
-
-
13744250159
-
Locked nucleic acid (LNA) mediated improvements in siRNA stability and functionality
-
Elmen, J., Thonberg, H., Ljungberg, K., Frieden, M., Westergaard, M., Xu, Y., Wahren, B., Liang, Z., Orum, H., Koch, T., et al. 2005. Locked nucleic acid (LNA) mediated improvements in siRNA stability and functionality. Nucleic Acids Res. 33: 439-447.
-
(2005)
Nucleic Acids Res
, vol.33
, pp. 439-447
-
-
Elmen, J.1
Thonberg, H.2
Ljungberg, K.3
Frieden, M.4
Westergaard, M.5
Xu, Y.6
Wahren, B.7
Liang, Z.8
Orum, H.9
Koch, T.10
-
25
-
-
33745608078
-
Off-target effects by siRNA can induce toxic phenotype
-
Fedorov, Y., Anderson, E.M., Birmingham, A., Reynolds, A., Karpilow, J., Robinson, K., Leake, D., Marshall, W.S., and Khvorova, A. 2006. Off-target effects by siRNA can induce toxic phenotype. RNA 12: 1188-1196.
-
(2006)
RNA
, vol.12
, pp. 1188-1196
-
-
Fedorov, Y.1
Anderson, E.M.2
Birmingham, A.3
Reynolds, A.4
Karpilow, J.5
Robinson, K.6
Leake, D.7
Marshall, W.S.8
Khvorova, A.9
-
26
-
-
0032545933
-
Potent and specific genetic interference by double-stranded RNA in Caenorhabitis elegans
-
Fire, A., Xu, S.Q., Montgomery, M.K., Kostas, S.A., Driver, S.E., and Mello, C.C. 1998. Potent and specific genetic interference by double-stranded RNA in Caenorhabitis elegans. Nature 391: 806-813.
-
(1998)
Nature
, vol.391
, pp. 806-813
-
-
Fire, A.1
Xu, S.Q.2
Montgomery, M.K.3
Kostas, S.A.4
Driver, S.E.5
Mello, C.C.6
-
27
-
-
11844251207
-
RNA interference in vivo: Toward synthetic small inhibitory RNA-based therapeutics
-
Fougerolles, A., Manoharan, M., Meyers, R., and Vornlocher, H.-P. 2005. RNA interference in vivo: Toward synthetic small inhibitory RNA-based therapeutics. Methods Enzymol. 392: 278-296.
-
(2005)
Methods Enzymol
, vol.392
, pp. 278-296
-
-
Fougerolles, A.1
Manoharan, M.2
Meyers, R.3
Vornlocher, H.-P.4
-
28
-
-
0000075467
-
Improved free-energy parameters for predictions of RNA duplex stability
-
Freier, S.M., Kierzek, R., Jaeger, J.A., Sugimoto, N., Caruthers, M.H., Neilson, T., and Turner, D.H. 1986. Improved free-energy parameters for predictions of RNA duplex stability. Proc. Natl. Acad. Sci. 83: 9373-9377.
-
(1986)
Proc. Natl. Acad. Sci
, vol.83
, pp. 9373-9377
-
-
Freier, S.M.1
Kierzek, R.2
Jaeger, J.A.3
Sugimoto, N.4
Caruthers, M.H.5
Neilson, T.6
Turner, D.H.7
-
29
-
-
0026767395
-
Circular dichroism spectroscopy of DNA
-
Gray, D.M., Ratliff, R.L., and Vaughan, M.R. 1992. Circular dichroism spectroscopy of DNA. Methods Enzymol. 211: 389-406.
-
(1992)
Methods Enzymol
, vol.211
, pp. 389-406
-
-
Gray, D.M.1
Ratliff, R.L.2
Vaughan, M.R.3
-
30
-
-
27744537851
-
Human RISC couples microRNA biogenesis and posttranscriptional gene silencing
-
Gregory, R.I., Chendrimada, T.P., Cooch, N., and Shiekhattar, R. 2005. Human RISC couples microRNA biogenesis and posttranscriptional gene silencing. Cell 123: 631-640.
-
(2005)
Cell
, vol.123
, pp. 631-640
-
-
Gregory, R.I.1
Chendrimada, T.P.2
Cooch, N.3
Shiekhattar, R.4
-
31
-
-
0028610511
-
Phe anticodon and T stem/loop domain
-
Phe anticodon and T stem/loop domain. Biochimie 76: 1143-1151.
-
(1994)
Biochimie
, vol.76
, pp. 1143-1151
-
-
Guenther, R.H.1
Bakal, R.S.2
Forrest, B.3
Chen, Y.4
Sengupta, R.5
Nawrot, B.6
Sochacka, E.7
Jankowska, J.8
Kraszewski, A.9
Malkiewicz, A.10
-
32
-
-
11344257391
-
RNA interference using boranophospate siRNAs: Structure-activity relationships
-
Hall, A.H.S., Wan, J., Shaughnessy, E.E., Ramsay Shaw, B., and Alexander, K.A. 2004. RNA interference using boranophospate siRNAs: Structure-activity relationships. Nucleic Acids Res. 32: 5991-6000.
-
(2004)
Nucleic Acids Res
, vol.32
, pp. 5991-6000
-
-
Hall, A.H.S.1
Wan, J.2
Shaughnessy, E.E.3
Ramsay Shaw, B.4
Alexander, K.A.5
-
33
-
-
0036811055
-
Effects on RNA interference in gene expression (RNAi) in cultured mammalian cells of mismaches and the introduction of chemical modifications at the 3′-ends of siRNAs
-
Hamada, M., Ohtsuka, T., Kawaida, R., Koizumi, M., Morita, K., Forukawa, H., Imanishi, T., Miyagishi, M., and Taira, K. 2002. Effects on RNA interference in gene expression (RNAi) in cultured mammalian cells of mismaches and the introduction of chemical modifications at the 3′-ends of siRNAs. Antisense Nucleic Acid Drug Dev. 12: 301-309.
-
(2002)
Antisense Nucleic Acid Drug Dev
, vol.12
, pp. 301-309
-
-
Hamada, M.1
Ohtsuka, T.2
Kawaida, R.3
Koizumi, M.4
Morita, K.5
Forukawa, H.6
Imanishi, T.7
Miyagishi, M.8
Taira, K.9
-
34
-
-
0024595042
-
Re-examination and further development of a precise and rapid dye method for measuring cell growth/cell kill
-
Hansen, M.B., Nielsen, S.E., and Berg, K. 1989. Re-examination and further development of a precise and rapid dye method for measuring cell growth/cell kill. J. Immunol. Methods 119: 203-210.
-
(1989)
J. Immunol. Methods
, vol.119
, pp. 203-210
-
-
Hansen, M.B.1
Nielsen, S.E.2
Berg, K.3
-
35
-
-
24344500241
-
Sequence, chemical, and structural variation of small interfering RNAs and short hairpin RNAs and the effect on mammalian gene silencing
-
Harborth, J., Elbashir, S.M., Vandenburgh, K., Manninga, H., Scaringe, S.A., Weber, K., and Tuschl, T. 2003. Sequence, chemical, and structural variation of small interfering RNAs and short hairpin RNAs and the effect on mammalian gene silencing. Antisense Nucleic Acid Drug Dev. 13: 83-105.
-
(2003)
Antisense Nucleic Acid Drug Dev
, vol.13
, pp. 83-105
-
-
Harborth, J.1
Elbashir, S.M.2
Vandenburgh, K.3
Manninga, H.4
Scaringe, S.A.5
Weber, K.6
Tuschl, T.7
-
36
-
-
0037089135
-
Positional effects of short interfering RNAs targeting the human coagulation trigger Tissue Factor
-
Holen, T., Amarzguioui, M., Wiiger, M.T., Babaie, E., and Prydz, H. 2002. Positional effects of short interfering RNAs targeting the human coagulation trigger Tissue Factor. Nucleic Acids Res. 30: 1757-1766.
-
(2002)
Nucleic Acids Res
, vol.30
, pp. 1757-1766
-
-
Holen, T.1
Amarzguioui, M.2
Wiiger, M.T.3
Babaie, E.4
Prydz, H.5
-
37
-
-
24044548350
-
Tolerated wobble mutations in siRNAs decrease specificity, but can enhance activity in vivo
-
Holen, T., Moe, S.E., Sorbo, J.G., Meza, T.J., Ottersen, O.P., and Klungland, A. 2005. Tolerated wobble mutations in siRNAs decrease specificity, but can enhance activity in vivo. Nucleic Acids Res. 33: 4704-4710.
-
(2005)
Nucleic Acids Res
, vol.33
, pp. 4704-4710
-
-
Holen, T.1
Moe, S.E.2
Sorbo, J.G.3
Meza, T.J.4
Ottersen, O.P.5
Klungland, A.6
-
38
-
-
20444410838
-
RNA interference induced by siRNA modified with 49-thioribonucleotides in cultured mammalian cells
-
Hoshika, S., Minakawa, N., Kamiya, H., Harashima, H., and Matsuda, A. 2005. RNA interference induced by siRNA modified with 49-thioribonucleotides in cultured mammalian cells. FEBS Lett. 579: 3115-3118.
-
(2005)
FEBS Lett
, vol.579
, pp. 3115-3118
-
-
Hoshika, S.1
Minakawa, N.2
Kamiya, H.3
Harashima, H.4
Matsuda, A.5
-
39
-
-
0037685280
-
Expression profiling reveals off-target gene regulation by RNAi
-
Jackson, A.L., Bartz, S.R., Schelter, J., Kobayashi, S.V., Burchard, J., Mao, M., Li, B., Cavet, G., and Linsley, P.S. 2003. Expression profiling reveals off-target gene regulation by RNAi. Nat. Biotechnol. 21: 635-637.
-
(2003)
Nat. Biotechnol
, vol.21
, pp. 635-637
-
-
Jackson, A.L.1
Bartz, S.R.2
Schelter, J.3
Kobayashi, S.V.4
Burchard, J.5
Mao, M.6
Li, B.7
Cavet, G.8
Linsley, P.S.9
-
40
-
-
33745614074
-
Position-specific chemical modification of siRNAs reduces "off-target" transcript silencing
-
Jackson, A.L., Burchard, J., Leake, D., Reynolds, A., Schelter, J., Guo, J., Johnson, J.M., Lim, L., Karpilow, J., Nichols, K., et al. 2006. Position-specific chemical modification of siRNAs reduces "off-target" transcript silencing. RNA 12: 1197-1205.
-
(2006)
RNA
, vol.12
, pp. 1197-1205
-
-
Jackson, A.L.1
Burchard, J.2
Leake, D.3
Reynolds, A.4
Schelter, J.5
Guo, J.6
Johnson, J.M.7
Lim, L.8
Karpilow, J.9
Nichols, K.10
-
41
-
-
0035887005
-
Dicer functions in RNA interference and in synthesis of small RNA involved in developmental timing in C. elegans
-
Ketting, R.F., Fischer, S.E., Bernstein, E., Sijen, T., Hannon, G.J., and Plasterk, R.H. 2001. Dicer functions in RNA interference and in synthesis of small RNA involved in developmental timing in C. elegans. Genes & Dev. 15: 2654-2659.
-
(2001)
Genes & Dev
, vol.15
, pp. 2654-2659
-
-
Ketting, R.F.1
Fischer, S.E.2
Bernstein, E.3
Sijen, T.4
Hannon, G.J.5
Plasterk, R.H.6
-
42
-
-
0142165224
-
Functional siRNAs and miRNAs exhibit strand bias
-
Khvorova, A., Reynolds, A., and Jayasena, S.D. 2003. Functional siRNAs and miRNAs exhibit strand bias. Cell 115: 209-216.
-
(2003)
Cell
, vol.115
, pp. 209-216
-
-
Khvorova, A.1
Reynolds, A.2
Jayasena, S.D.3
-
43
-
-
0028885841
-
Synthesis of oligoribonucleotides containing 2-thiouridine: Incorporation of 2-thiouridine phosphoramidite without base protection
-
Kumar, R.K. and Davis, D.R. 1995. Synthesis of oligoribonucleotides containing 2-thiouridine: Incorporation of 2-thiouridine phosphoramidite without base protection. J. Org. Chem. 60: 7726-7727.
-
(1995)
J. Org. Chem
, vol.60
, pp. 7726-7727
-
-
Kumar, R.K.1
Davis, D.R.2
-
44
-
-
0030839446
-
Synthesis and studies on the effect of 2-thiouridine and 4-thiouridine on sugar conformation and RNA duplex stability
-
Kumar, R.K. and Davis, D.R. 1997. Synthesis and studies on the effect of 2-thiouridine and 4-thiouridine on sugar conformation and RNA duplex stability. Nucleic Acids Res. 25: 1272-1280.
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 1272-1280
-
-
Kumar, R.K.1
Davis, D.R.2
-
45
-
-
1942533474
-
In vivo activity of nuclease-resistant siRNAs
-
Layzer, J.M., McCaffrey, A.P., Tanner, A.K., Huang, Z., Kay, M.A., and Sullenger, B.A. 2004. In vivo activity of nuclease-resistant siRNAs. RNA 10: 766-771.
-
(2004)
RNA
, vol.10
, pp. 766-771
-
-
Layzer, J.M.1
McCaffrey, A.P.2
Tanner, A.K.3
Huang, Z.4
Kay, M.A.5
Sullenger, B.A.6
-
46
-
-
34447580561
-
Stabilized polynucleotides for use in RNA interference
-
US Patent No. 20040266707
-
Leake, D., Reynolds, A., Khvorova, A., Marshall, W., and Scaringe, S. 2004. Stabilized polynucleotides for use in RNA interference. US Patent No. 20040266707.
-
(2004)
-
-
Leake, D.1
Reynolds, A.2
Khvorova, A.3
Marshall, W.4
Scaringe, S.5
-
47
-
-
14844303872
-
The effects of thiophosphate substitutions on native siRNA gene silencing
-
Li, Z.Y., Mao, H., Kallick, D.A., and Gorenstein, D.G. 2005. The effects of thiophosphate substitutions on native siRNA gene silencing. Biochem. Biophys. Res. Commun. 329: 1026-1030.
-
(2005)
Biochem. Biophys. Res. Commun
, vol.329
, pp. 1026-1030
-
-
Li, Z.Y.1
Mao, H.2
Kallick, D.A.3
Gorenstein, D.G.4
-
48
-
-
0345359925
-
Structure and nucleic-acid binding of the Drosophila Argonaute 2 PAZ domain
-
Lingel, A., Simo, B., Izaurralde, E., and Sattler, M. 2003. Structure and nucleic-acid binding of the Drosophila Argonaute 2 PAZ domain. Nature 426: 465-469.
-
(2003)
Nature
, vol.426
, pp. 465-469
-
-
Lingel, A.1
Simo, B.2
Izaurralde, E.3
Sattler, M.4
-
49
-
-
0032122430
-
Hybridization properties of base-modified oligonucleotides within the double and triple helix motif
-
Luyten, I. and Herdewijn, P. 1998. Hybridization properties of base-modified oligonucleotides within the double and triple helix motif. Eur. J. Med. Chem. 33: 515-576.
-
(1998)
Eur. J. Med. Chem
, vol.33
, pp. 515-576
-
-
Luyten, I.1
Herdewijn, P.2
-
50
-
-
2442679207
-
Structural basis for overhang-specific small interfering RNA recognition by the PAZ domain
-
Ma, J.B., Ye, K., and Patel, D.J. 2004. Structural basis for overhang-specific small interfering RNA recognition by the PAZ domain. Nature 429: 318-322.
-
(2004)
Nature
, vol.429
, pp. 318-322
-
-
Ma, J.B.1
Ye, K.2
Patel, D.J.3
-
51
-
-
15844371219
-
Structural basis for 5′-end-specific recognition of guide RNA by the A. fulgidus Piwi protein
-
Ma, J.B., Yuan, Y.R., Meister, G., Pei, Y., Tuschl, T., and Patel, D.J. 2005. Structural basis for 5′-end-specific recognition of guide RNA by the A. fulgidus Piwi protein. Nature 434: 666-670.
-
(2005)
Nature
, vol.434
, pp. 666-670
-
-
Ma, J.B.1
Yuan, Y.R.2
Meister, G.3
Pei, Y.4
Tuschl, T.5
Patel, D.J.6
-
52
-
-
8844262560
-
RNA interference and chemically modified small interfering RNAs
-
Manoharan, M. 2004. RNA interference and chemically modified small interfering RNAs. Curr. Opin. Chem. Biol. 8: 570-579.
-
(2004)
Curr. Opin. Chem. Biol
, vol.8
, pp. 570-579
-
-
Manoharan, M.1
-
53
-
-
2442495329
-
RISC is a 5′ phosphomonoester- producing RNA endonuclease
-
Martinez, J. and Tuschl, T. 2004. RISC is a 5′ phosphomonoester- producing RNA endonuclease. Genes & Dev. 18: 975-980.
-
(2004)
Genes & Dev
, vol.18
, pp. 975-980
-
-
Martinez, J.1
Tuschl, T.2
-
54
-
-
0037031576
-
Single-stranded antisense siRNAs guide target RNA cleveage in RNAi
-
Martinez, J., Patkaniowska, A., Urlaub, H., Luhrmann, R., and Tuschl, T. 2002. Single-stranded antisense siRNAs guide target RNA cleveage in RNAi. Cell 110: 563-574.
-
(2002)
Cell
, vol.110
, pp. 563-574
-
-
Martinez, J.1
Patkaniowska, A.2
Urlaub, H.3
Luhrmann, R.4
Tuschl, T.5
-
55
-
-
27744590896
-
Passenger-strand cleavage facilitates assembly of siRNA into Ago2-containing RNAi enzyme complexes
-
Matranga, C., Tomari, Y., Shin, C., Bartel, D.P., and Zamore, P.D. 2005. Passenger-strand cleavage facilitates assembly of siRNA into Ago2-containing RNAi enzyme complexes. Cell 123: 607-620.
-
(2005)
Cell
, vol.123
, pp. 607-620
-
-
Matranga, C.1
Tomari, Y.2
Shin, C.3
Bartel, D.P.4
Zamore, P.D.5
-
56
-
-
34447565566
-
-
McSwiggen, J. and Beigelman, L. 2003. RNA interference mediated treatment of Alzheimer's disease using short interfering nucleic acids siNA, European Patent No. EP1423404
-
McSwiggen, J. and Beigelman, L. 2003. RNA interference mediated treatment of Alzheimer's disease using short interfering nucleic acids (siNA). European Patent No. EP1423404.
-
-
-
-
57
-
-
0018086876
-
Stacking of Crick Wobble pair and Watson-Crick pair: Stability rules of G-U pairs at ends of helical stems in tRNAs and the relation to codon-anticodon Wobble interaction
-
Mizuno, H. and Sundaralingam, M. 1978. Stacking of Crick Wobble pair and Watson-Crick pair: Stability rules of G-U pairs at ends of helical stems in tRNAs and the relation to codon-anticodon Wobble interaction. Nucleic Acids Res. 5: 4451-4461.
-
(1978)
Nucleic Acids Res
, vol.5
, pp. 4451-4461
-
-
Mizuno, H.1
Sundaralingam, M.2
-
58
-
-
33744503652
-
Chemical and structural diversity of siRNA molecules
-
Nawrot, B. and Sipa, K. 2006. Chemical and structural diversity of siRNA molecules. Curr. Top. Med. Chem. 6: 913-925.
-
(2006)
Curr. Top. Med. Chem
, vol.6
, pp. 913-925
-
-
Nawrot, B.1
Sipa, K.2
-
59
-
-
2942530302
-
Novel nucleic acid analogs with a chimeric phosphinate/phosphate backbone, synthesis and biophysical properties
-
Nawrot, B., Michalak, O., Janicka, M., Maszewska, M., Wojcik, M., Nowak, G., Mikolajczyk, B., and Stec, W.J. 2004. Novel nucleic acid analogs with a chimeric phosphinate/phosphate backbone, synthesis and biophysical properties. Arkivoc (iii) 151-175.
-
(2004)
Arkivoc
, vol.3
, pp. 151-175
-
-
Nawrot, B.1
Michalak, O.2
Janicka, M.3
Maszewska, M.4
Wojcik, M.5
Nowak, G.6
Mikolajczyk, B.7
Stec, W.J.8
-
60
-
-
0035798415
-
ATP requirements and small interfering RNA structure in the RNA interference pathway
-
Nykanen, A., Haley, B., and Zamore, P.D. 2001. ATP requirements and small interfering RNA structure in the RNA interference pathway. Cell 107: 309-321.
-
(2001)
Cell
, vol.107
, pp. 309-321
-
-
Nykanen, A.1
Haley, B.2
Zamore, P.D.3
-
61
-
-
28544444484
-
Phosphorothioate-stimulated uptake of short interfering RNA by human cells
-
Overhoff, M. and Sczakiel, G. 2005. Phosphorothioate-stimulated uptake of short interfering RNA by human cells. EMBO Rep. 6: 1176-1181.
-
(2005)
EMBO Rep
, vol.6
, pp. 1176-1181
-
-
Overhoff, M.1
Sczakiel, G.2
-
62
-
-
0033634682
-
Functional anatomy of a dsRNA trigger: Differential requirement for the two trigger strands in RNA interference
-
Parrish, S., Fleenor, J., Xu, S., Mello, C., and Fire, A. 2000. Functional anatomy of a dsRNA trigger: Differential requirement for the two trigger strands in RNA interference. Mol. Cell 6: 1077-1087.
-
(2000)
Mol. Cell
, vol.6
, pp. 1077-1087
-
-
Parrish, S.1
Fleenor, J.2
Xu, S.3
Mello, C.4
Fire, A.5
-
63
-
-
0347623204
-
Nonspecific, concentration-dependent stimulation and represion of mammalian gene expression by small interfering RNAs (siRNAs)
-
Persengiev, S.P., Zhu, X., and Green, M.R. 2004. Nonspecific, concentration-dependent stimulation and represion of mammalian gene expression by small interfering RNAs (siRNAs). RNA 10: 12-18.
-
(2004)
RNA
, vol.10
, pp. 12-18
-
-
Persengiev, S.P.1
Zhu, X.2
Green, M.R.3
-
64
-
-
21244497878
-
Positional effect of chemical modifications on short interference RNA activity in mammalian cells
-
Prakash, T.P., Allerson, C.R., Dande, P., Vickers, T.A., Sioufi, N., Jarres, R., Baker, B.F., Swayze, E.E., Griffey, R.H., and Bhat, B. 2005. Positional effect of chemical modifications on short interference RNA activity in mammalian cells. J. Med. Chem. 48: 4247-4253.
-
(2005)
J. Med. Chem
, vol.48
, pp. 4247-4253
-
-
Prakash, T.P.1
Allerson, C.R.2
Dande, P.3
Vickers, T.A.4
Sioufi, N.5
Jarres, R.6
Baker, B.F.7
Swayze, E.E.8
Griffey, R.H.9
Bhat, B.10
-
65
-
-
7444250507
-
Degradation of BACE by the ubiquitin-proteasome pathway
-
Qing, H., Zhou, W., Christensen, M.A., Sun, X., Tong, Y., and Song, W. 2004. Degradation of BACE by the ubiquitin-proteasome pathway. FASEB J. 18: 1571-1573.
-
(2004)
FASEB J
, vol.18
, pp. 1571-1573
-
-
Qing, H.1
Zhou, W.2
Christensen, M.A.3
Sun, X.4
Tong, Y.5
Song, W.6
-
66
-
-
27744506761
-
Argonaute2 cleaves the anti-guide strand of siRNA during RISC activation
-
Rand, T.A., Petersen, S., Du, F., and Wang, X. 2005. Argonaute2 cleaves the anti-guide strand of siRNA during RISC activation. Cell 123: 621-629.
-
(2005)
Cell
, vol.123
, pp. 621-629
-
-
Rand, T.A.1
Petersen, S.2
Du, F.3
Wang, X.4
-
67
-
-
0001750516
-
Forces stabilizing association between bases: Hydrogen bonding and base stacking
-
ed. C.R. Cantor, pp, Springer-Verlag, New York
-
Saenger, W. 1984. Forces stabilizing association between bases: Hydrogen bonding and base stacking. In Principle of nucleic acids structure (ed. C.R. Cantor), pp. 116-158. Springer-Verlag, New York.
-
(1984)
Principle of nucleic acids structure
, pp. 116-158
-
-
Saenger, W.1
-
68
-
-
0142173075
-
Small RNAs with imperfect match to endogenous mRNA repress translation. Implications for off-target activity of small inhibitory RNA in mammalian cells
-
Saxena, S., Jonsson, Z.O., and Dutta, A. 2003. Small RNAs with imperfect match to endogenous mRNA repress translation. Implications for off-target activity of small inhibitory RNA in mammalian cells. J. Biol. Chem. 278: 44312-44319.
-
(2003)
J. Biol. Chem
, vol.278
, pp. 44312-44319
-
-
Saxena, S.1
Jonsson, Z.O.2
Dutta, A.3
-
69
-
-
0016435175
-
The effects of thioketo substitution upon uracil-adenine interactions in polyribonucleotides. Synthesis and properties of the alternating polynucleotides poly[r(A-s2U)] and poly[r(A-s2s4U)]
-
Scheit, K.H. and Faerber, P. 1975. The effects of thioketo substitution upon uracil-adenine interactions in polyribonucleotides. Synthesis and properties of the alternating polynucleotides poly[r(A-s2U)] and poly[r(A-s2s4U)]. Eur. J. Biochem. 50: 549-555.
-
(1975)
Eur. J. Biochem
, vol.50
, pp. 549-555
-
-
Scheit, K.H.1
Faerber, P.2
-
70
-
-
10744225153
-
Asymmetry in the assembly of the RNAi enzyme complex
-
Schwarz, D.S., Hutvagner, G., Du, T., Xu, Z., Aronin, N., and Zamore, P.D. 2003. Asymmetry in the assembly of the RNAi enzyme complex. Cell 115: 199-208.
-
(2003)
Cell
, vol.115
, pp. 199-208
-
-
Schwarz, D.S.1
Hutvagner, G.2
Du, T.3
Xu, Z.4
Aronin, N.5
Zamore, P.D.6
-
71
-
-
0034698866
-
Synthesis and properties of 2′-O-methyl-2-thiouridine and Oligoribonucleotides containing 2′-O-methyl-2-thiouridine
-
Shohda, K., Okamoto, I., Wada, T., Seio, K., and Sekine, M. 2000. Synthesis and properties of 2′-O-methyl-2-thiouridine and Oligoribonucleotides containing 2′-O-methyl-2-thiouridine. Bioorg. Med. Chem. Lett. 10: 1795-1798.
-
(2000)
Bioorg. Med. Chem. Lett
, vol.10
, pp. 1795-1798
-
-
Shohda, K.1
Okamoto, I.2
Wada, T.3
Seio, K.4
Sekine, M.5
-
72
-
-
0034757789
-
Efficient assessment of modified nucleoside stability under conditions of automated oligonucleotide synthesis: Characterization of the oxidation and oxidative desulfurization of 2-thiouridine
-
Sochacka, E. 2001. Efficient assessment of modified nucleoside stability under conditions of automated oligonucleotide synthesis: Characterization of the oxidation and oxidative desulfurization of 2-thiouridine. Nucleosides Nucleotides Nucleic Acids 20: 1871-1879.
-
(2001)
Nucleosides Nucleotides Nucleic Acids
, vol.20
, pp. 1871-1879
-
-
Sochacka, E.1
-
73
-
-
9144247189
-
Therapeutic silencing of an endogenous gene by systhemic administration of modified siRNAs
-
Soutschek, J., Akinc, A., Bramlage, B., Charisse, K., Constein, R., Donoghue, M., Elbashir, S., Geick, A., Hadwiger, P., Harborth, J., et al. 2004. Therapeutic silencing of an endogenous gene by systhemic administration of modified siRNAs. Nature 432: 173-178.
-
(2004)
Nature
, vol.432
, pp. 173-178
-
-
Soutschek, J.1
Akinc, A.2
Bramlage, B.3
Charisse, K.4
Constein, R.5
Donoghue, M.6
Elbashir, S.7
Geick, A.8
Hadwiger, P.9
Harborth, J.10
-
74
-
-
0029988776
-
2+ demonstrates that modified nucleosides contribute to regional conformations of tRNA
-
2+ demonstrates that modified nucleosides contribute to regional conformations of tRNA. Nucleosides Nucleotides 15: 1009-1028.
-
(1996)
Nucleosides Nucleotides
, vol.15
, pp. 1009-1028
-
-
Stuart, J.W.1
Basti, M.M.2
Smith, W.3
Forrest, B.4
Guenther, R.5
Sierzputowska-Gracz, H.6
Nawrot, B.7
Malkiewicz, A.8
Agris, P.F.9
-
75
-
-
0037224921
-
A biochemical framework for RNA silencing in plants
-
Tang, G., Reinhart, B.J., Bartel, D.P., and Zamore, P.D. 2003. A biochemical framework for RNA silencing in plants. Genes & Dev. 17: 49-63.
-
(2003)
Genes & Dev
, vol.17
, pp. 49-63
-
-
Tang, G.1
Reinhart, B.J.2
Bartel, D.P.3
Zamore, P.D.4
-
76
-
-
0033554848
-
Thermodynamics of RNA-RNA duplexes with 2- or 4-thiouridines: Implications for antisense design and targeting a group I intron
-
Testa, S.M., Disney, M.D., Turner, D.H., and Kierzek, R. 1999. Thermodynamics of RNA-RNA duplexes with 2- or 4-thiouridines: Implications for antisense design and targeting a group I intron. Biochemistry 38: 16655-16662.
-
(1999)
Biochemistry
, vol.38
, pp. 16655-16662
-
-
Testa, S.M.1
Disney, M.D.2
Turner, D.H.3
Kierzek, R.4
-
77
-
-
8844271740
-
Protein sensor for siRNA asymmetry
-
Tomari, Y., Matranga, C., Haley, B., Martinez, N., and Zamore, P.D. 2004. Protein sensor for siRNA asymmetry. Science 306: 1377-1380.
-
(2004)
Science
, vol.306
, pp. 1377-1380
-
-
Tomari, Y.1
Matranga, C.2
Haley, B.3
Martinez, N.4
Zamore, P.D.5
-
78
-
-
26944499005
-
The therapeutic potential of RNA interference
-
Uprichard, S.L. 2005. The therapeutic potential of RNA interference. FEBS Lett. 579: 5996-6007.
-
(2005)
FEBS Lett
, vol.579
, pp. 5996-6007
-
-
Uprichard, S.L.1
-
79
-
-
0034232357
-
The G X U wobble base pair. A fundamental building block of RNA structure crucial to RNA function in diverse biological systems
-
Varani, G. and McClain, W.H. 2000. The G X U wobble base pair. A fundamental building block of RNA structure crucial to RNA function in diverse biological systems. EMBO Rep. 1: 18-23.
-
(2000)
EMBO Rep
, vol.1
, pp. 18-23
-
-
Varani, G.1
McClain, W.H.2
-
80
-
-
0000521158
-
Restrained refinement of two crystalline forms of yeast aspartic acid and phenylalanine transfer RNA crystals
-
Westhof, E., Dumas, P., and Moras, D. 1988. Restrained refinement of two crystalline forms of yeast aspartic acid and phenylalanine transfer RNA crystals. Acta Crystallogr. A 44: 112-123.
-
(1988)
Acta Crystallogr. A
, vol.44
, pp. 112-123
-
-
Westhof, E.1
Dumas, P.2
Moras, D.3
-
81
-
-
0642345790
-
Structure and conserved RNA binding of the PAZ domain
-
Yan, K.S., Farooq, A., Hen, A., Zeng, L., and Zhou, M.M. 2003. Structure and conserved RNA binding of the PAZ domain. Nature 426: 469-474.
-
(2003)
Nature
, vol.426
, pp. 469-474
-
-
Yan, K.S.1
Farooq, A.2
Hen, A.3
Zeng, L.4
Zhou, M.M.5
-
82
-
-
0034737298
-
RNAi: Double-stranded RNA directs the ATP-dependent cleavage of mRNA at 21 to 23 nucleotide intervals
-
Zamore, P.D., Tuschl, T., Sharp, P.A., and Bartel, D.P. 2000. RNAi: Double-stranded RNA directs the ATP-dependent cleavage of mRNA at 21 to 23 nucleotide intervals. Cell 101: 25-33.
-
(2000)
Cell
, vol.101
, pp. 25-33
-
-
Zamore, P.D.1
Tuschl, T.2
Sharp, P.A.3
Bartel, D.P.4
|