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Volumn 12, Issue 5, 2002, Pages 301-309

Effects on RNA interference in gene expression (RNAi) in cultured mammalian cells of mismatches and the introduction of chemical modifications at the 3′-ends of siRNAs

Author keywords

[No Author keywords available]

Indexed keywords

2' O,4' C ETHYLENE THYMIDINE; COMPLEMENTARY RNA; DOUBLE STRANDED RNA; ETHYLENE; JUN DIMERIZATION PROTEIN 2; MESSENGER RNA; NUCLEIC ACID; PROTEIN; RNA; SMALL INTERFERING RNA; THYMIDINE DERIVATIVE; UNCLASSIFIED DRUG; JUNDP2 PROTEIN, MOUSE; PRIMER DNA; REPRESSOR PROTEIN;

EID: 0036811055     PISSN: 10872906     EISSN: None     Source Type: Journal    
DOI: 10.1089/108729002761381285     Document Type: Article
Times cited : (108)

References (50)
  • 1
    • 0035694935 scopus 로고    scopus 로고
    • Suppression of gene expression by RNA interference in cultured plant cells
    • Gene Function Research Laboratory National Institute of Advanced Industrial Science and Technology (AIST) Central 4 1-1-1 Higashi, Tsukuba Science City 305-8562 Japan Akashi, H., Miyagishi, M., and Taira, K. (2002). Suppression of gene expression by RNA interference in cultured plant cells. Antisense Nucleic Acid Drug Dev. 11, 359-367.
    • (2002) Antisense Nucleic Acid Drug Dev. , vol.11 , pp. 359-367
    • Akashi, H.1    Miyagishi, M.2    Taira, K.3
  • 2
    • 0033119713 scopus 로고    scopus 로고
    • Fast forward genetics based on virus-induced gene silencing
    • Baulcombe, D.C. (1999). Fast forward genetics based on virus-induced gene silencing. Curr. Opin. Plant Biol. 2, 109-113.
    • (1999) Curr. Opin. Plant Biol. , vol.2 , pp. 109-113
    • Baulcombe, D.C.1
  • 3
    • 0035905766 scopus 로고    scopus 로고
    • Role for a bidentate ribonuclease in the initiation step of RNA interference
    • Bernstein, E., Caudy, A.A., Hammond, S.M., and Hannon, G.J. (2001). Role for a bidentate ribonuclease in the initiation step of RNA interference. Nature 409, 363-366.
    • (2001) Nature , vol.409 , pp. 363-366
    • Bernstein, E.1    Caudy, A.A.2    Hammond, S.M.3    Hannon, G.J.4
  • 4
    • 0035856381 scopus 로고    scopus 로고
    • Short 5′-phosphorylated double-stranded RNAs induce RNA interference in Drosophila
    • Boutla, A., Delidakis, C., Livadaras, I., Tsagris, M., and Tabler, M. (2001). Short 5′-phosphorylated double-stranded RNAs induce RNA interference in Drosophila. Curr. Biol. 11, 1776-1780.
    • (2001) Curr. Biol. , vol.11 , pp. 1776-1780
    • Boutla, A.1    Delidakis, C.2    Livadaras, I.3    Tsagris, M.4    Tabler, M.5
  • 5
    • 0037134020 scopus 로고    scopus 로고
    • A system for stable expression of short interfering RNAs in mammalian cells
    • Brummelkamp, T.R., Bernards, R., and Agami, R. (2002). A system for stable expression of short interfering RNAs in mammalian cells. Science 296, 550-553.
    • (2002) Science , vol.296 , pp. 550-553
    • Brummelkamp, T.R.1    Bernards, R.2    Agami, R.3
  • 6
    • 0035859929 scopus 로고    scopus 로고
    • Specific inhibition of gene expression by small double-stranded RNAs in invertebrate and vertebrate systems
    • Caplen, N.J., Parrish, S., Imani, F., Fire, A., and Morgan, R.A. (2001). Specific inhibition of gene expression by small double-stranded RNAs in invertebrate and vertebrate systems. Proc. Natl. Acad. Sci. USA 98, 9742-9747.
    • (2001) Proc. Natl. Acad. Sci. USA , vol.98 , pp. 9742-9747
    • Caplen, N.J.1    Parrish, S.2    Imani, F.3    Fire, A.4    Morgan, R.A.5
  • 7
    • 0030725442 scopus 로고    scopus 로고
    • The double-stranded RNA-dependent protein kinase PKR: Structure and function
    • Clemens, M.J., and Elia, A. (1997). The double-stranded RNA-dependent protein kinase PKR: Structure and function. J. Interferon Cytokine Res. 17, 503-524.
    • (1997) J. Interferon Cytokine Res. , vol.17 , pp. 503-524
    • Clemens, M.J.1    Elia, A.2
  • 8
    • 0035942736 scopus 로고    scopus 로고
    • Duplexes of 21-nucleotide RNAs mediate RNA interference in cultured mammalian cells
    • Elbashir, S.M., Harborth, J., Lendeckel, W., Yalcin, A., Weber, K., and Tuschl, T. (2001a). Duplexes of 21-nucleotide RNAs mediate RNA interference in cultured mammalian cells. Nature 411, 494-498.
    • (2001) Nature , vol.411 , pp. 494-498
    • Elbashir, S.M.1    Harborth, J.2    Lendeckel, W.3    Yalcin, A.4    Weber, K.5    Tuschl, T.6
  • 9
    • 0035863097 scopus 로고    scopus 로고
    • RNA interference is mediated by 21- and 22-nucleotide RNAs
    • Elbashir, S.M., Lendeckel, W., and Tuschl, T. (2001b). RNA interference is mediated by 21- and 22-nucleotide RNAs. Genes Dev. 15, 188-200.
    • (2001) Genes Dev. , vol.15 , pp. 188-200
    • Elbashir, S.M.1    Lendeckel, W.2    Tuschl, T.3
  • 10
    • 0035803583 scopus 로고    scopus 로고
    • Functional anatomy of siRNAs for mediating efficient RNAi in Drosophila melanogaster embryo lysate
    • Elbashir, S.M., Martinez, J., Patkaniowska, A., Lendeckel, W., and Tuschl, T. (2001c). Functional anatomy of siRNAs for mediating efficient RNAi in Drosophila melanogaster embryo lysate. EMBO J. 20, 6877-6888.
    • (2001) EMBO J. , vol.20 , pp. 6877-6888
    • Elbashir, S.M.1    Martinez, J.2    Patkaniowska, A.3    Lendeckel, W.4    Tuschl, T.5
  • 11
    • 0033198944 scopus 로고    scopus 로고
    • RNA-triggered gene silencing
    • Fire, A. (1999). RNA-triggered gene silencing. Trends Genet. 15, 358-363.
    • (1999) Trends Genet. , vol.15 , pp. 358-363
    • Fire, A.1
  • 12
    • 0032545933 scopus 로고    scopus 로고
    • Potent and specific genetic interference by double-stranded RNA in Caenorhabditis elegans
    • Fire, A., Xu, S., Montgomery, M.K., Kostas, S.A., Driver, S.E., and Mello, C.C. (1998). Potent and specific genetic interference by double-stranded RNA in Caenorhabditis elegans. Nature 391, 806-811.
    • (1998) Nature , vol.391 , pp. 806-811
    • Fire, A.1    Xu, S.2    Montgomery, M.K.3    Kostas, S.A.4    Driver, S.E.5    Mello, C.C.6
  • 13
    • 0034676457 scopus 로고    scopus 로고
    • Functional genomic analysis of C. elegans chromosome I by systematic RNA interference
    • Fraser, A.G., Kamath, R.S., Zipperlen, P., Martinez-Campos, M., Sohrmann, M., and Ahringer, J. (2000). Functional genomic analysis of C. elegans chromosome I by systematic RNA interference. Nature 408, 325-330.
    • (2000) Nature , vol.408 , pp. 325-330
    • Fraser, A.G.1    Kamath, R.S.2    Zipperlen, P.3    Martinez-Campos, M.4    Sohrmann, M.5    Ahringer, J.6
  • 15
    • 0033525209 scopus 로고    scopus 로고
    • Dissecting the mechanisms of posttranscriptional gene silencing: Divide and conquer
    • Grant, S.R. (1999). Dissecting the mechanisms of posttranscriptional gene silencing: Divide and conquer. Cell 96, 303-306.
    • (1999) Cell , vol.96 , pp. 303-306
    • Grant, S.R.1
  • 16
    • 0034673638 scopus 로고    scopus 로고
    • An RNA-directed nuclease mediates posttranscriptional gene silencing in Drosophila cells
    • Hammond, S.M., Bernstein, E., Beach, D., and Hannon, G.J. (2000). An RNA-directed nuclease mediates posttranscriptional gene silencing in Drosophila cells. Nature 404, 293-296.
    • (2000) Nature , vol.404 , pp. 293-296
    • Hammond, S.M.1    Bernstein, E.2    Beach, D.3    Hannon, G.J.4
  • 17
    • 0035839109 scopus 로고    scopus 로고
    • Argonaute2, a link between genetic and biochemical analyses of RNAi
    • Hammond, S.M., Boettcher, S., Caudy, A.A., Kobayashi, R., and Hannon, G.J. (2001a). Argonaute2, a link between genetic and biochemical analyses of RNAi. Science 293, 1146-1150.
    • (2001) Science , vol.293 , pp. 1146-1150
    • Hammond, S.M.1    Boettcher, S.2    Caudy, A.A.3    Kobayashi, R.4    Hannon, G.J.5
  • 18
    • 0035261255 scopus 로고    scopus 로고
    • Post-transcriptional gene silencing by double-stranded RNA
    • Hammond, S.M., Caudy, A.A., and Hannon, G.J. (2001b). Post-transcriptional gene silencing by double-stranded RNA. Nat. Rev. Genet. 2, 110-119.
    • (2001) Nat. Rev. Genet. , vol.2 , pp. 110-119
    • Hammond, S.M.1    Caudy, A.A.2    Hannon, G.J.3
  • 19
    • 0037089135 scopus 로고    scopus 로고
    • Positional effects of short interfering RNAs targeting the human coagulation trigger tissue factor
    • Holen, T., Amarzguioui, M., Wiiger, M.T., Babaie, E., and Prydz, H. (2002). Positional effects of short interfering RNAs targeting the human coagulation trigger tissue factor. Nucleic Acids Res. 30, 1757-1766.
    • (2002) Nucleic Acids Res. , vol.30 , pp. 1757-1766
    • Holen, T.1    Amarzguioui, M.2    Wiiger, M.T.3    Babaie, E.4    Prydz, H.5
  • 20
    • 0033615602 scopus 로고    scopus 로고
    • Interaction of the metalloprotease disintegrins MDC9 and MDC15 with two SH3 domain-containing proteins, endophilin I and SH3PX1
    • Howard, L., Nelson, K.K., Maciewicz, R.A., and Blobel, C.P. (1999). Interaction of the metalloprotease disintegrins MDC9 and MDC15 with two SH3 domain-containing proteins, endophilin I and SH3PX1. J. Biol. Chem. 274, 31693-31699.
    • (1999) J. Biol. Chem. , vol.274 , pp. 31693-31699
    • Howard, L.1    Nelson, K.K.2    Maciewicz, R.A.3    Blobel, C.P.4
  • 21
    • 0036212846 scopus 로고    scopus 로고
    • Identification of genes that function in the TNF-α-mediated pathway to apoptosis by analysis of randomized hybrid-ribozyme libraries
    • Kawasaki, H., Onuki, R., Suyama, E., and Taira, K. (2002). Identification of genes that function in the TNF-α-mediated pathway to apoptosis by analysis of randomized hybrid-ribozyme libraries. Nat. Biotechnol. 20, 376-380.
    • (2002) Nat. Biotechnol. , vol.20 , pp. 376-380
    • Kawasaki, H.1    Onuki, R.2    Suyama, E.3    Taira, K.4
  • 24
    • 0034827864 scopus 로고    scopus 로고
    • Allosterically controlled single-chained maxizymes with extremely high and specific activity
    • Kuwabara, T., Hamada, M., Warashina, M., and Taira, K. (2001). Allosterically controlled single-chained maxizymes with extremely high and specific activity. Biomacromolecules 2, 788-799.
    • (2001) Biomacromolecules , vol.2 , pp. 788-799
    • Kuwabara, T.1    Hamada, M.2    Warashina, M.3    Taira, K.4
  • 26
    • 0032214088 scopus 로고    scopus 로고
    • A novel allosterically trans-activated ribozyme, the maxizyme, with exceptional specificity in vitro and in vivo
    • Kuwabara, T., Warashina, M., Tanabe, T., Tani, K., Asano, S., and Taira, K. (1998b). A novel allosterically trans-activated ribozyme, the maxizyme, with exceptional specificity in vitro and in vivo. Mol. Cell 2, 617-627.
    • (1998) Mol. Cell , vol.2 , pp. 617-627
    • Kuwabara, T.1    Warashina, M.2    Tanabe, T.3    Tani, K.4    Asano, S.5    Taira, K.6
  • 27
  • 28
    • 0035839105 scopus 로고    scopus 로고
    • RNA: Guiding gene silencing
    • Matzke, M., Matzke, A.J., and Kooter, J.M. (2001). RNA: Guiding gene silencing. Science 293, 1080-1083.
    • (2001) Science , vol.293 , pp. 1080-1083
    • Matzke, M.1    Matzke, A.J.2    Kooter, J.M.3
  • 29
    • 0033573924 scopus 로고    scopus 로고
    • Targeted disruption of gene function in Drosophila by RNA interference (RNA-i): A role for nautilus in embryonic somatic muscle formation
    • Misquitta, L., and Paterson, B.M. (1999). Targeted disruption of gene function in Drosophila by RNA interference (RNA-i): A role for nautilus in embryonic somatic muscle formation. Proc. Natl. Acad. Sci. USA 96, 1451-1456.
    • (1999) Proc. Natl. Acad. Sci. USA , vol.96 , pp. 1451-1456
    • Misquitta, L.1    Paterson, B.M.2
  • 30
    • 0036245628 scopus 로고    scopus 로고
    • U6 promoter-driven siRNAs with uridine-stretched 3′ overhang efficiently suppress targeted gene expression in mammalian cells
    • Miyagishi, M., and Taira, K. (2002). U6 promoter-driven siRNAs with uridine-stretched 3′ overhang efficiently suppress targeted gene expression in mammalian cells. Nat. Biotechnol. 20, 497-500.
    • (2002) Nat. Biotechnol. , vol.20 , pp. 497-500
    • Miyagishi, M.1    Taira, K.2
  • 31
    • 0037033135 scopus 로고    scopus 로고
    • 2′-O,4′-C-ethylene-bridged nucleic acids (ENA): Highly nuclease-resistant and thermodynamically stable oligonucleotides for antisense drug
    • Morita, K., Hasegawa, C., Kaneko, M., Tsutsumi, S., Sone, J., Ishikawa, T., Imanishi, T., and Koizumi, M. (2002). 2′-O,4′-C-ethylene-bridged nucleic acids (ENA): Highly nuclease-resistant and thermodynamically stable oligonucleotides for antisense drug. Bioorg. Med. Chem. Lett. 12, 73-76.
    • (2002) Bioorg. Med. Chem. Lett. , vol.12 , pp. 73-76
    • Morita, K.1    Hasegawa, C.2    Kaneko, M.3    Tsutsumi, S.4    Sone, J.5    Ishikawa, T.6    Imanishi, T.7    Koizumi, M.8
  • 32
    • 0001359591 scopus 로고
    • Introduction of a chimeric chalcone synthase gene into petunia results in reversible cosuppression of homologous gene in trans
    • Napoli, C., Lemieux, C., and Jorgensen, R. (1990). Introduction of a chimeric chalcone synthase gene into petunia results in reversible cosuppression of homologous gene in trans. Plant Cell 2, 279-289.
    • (1990) Plant Cell , vol.2 , pp. 279-289
    • Napoli, C.1    Lemieux, C.2    Jorgensen, R.3
  • 33
    • 0035798415 scopus 로고    scopus 로고
    • ATP requirements and small interfering RNA structure in the RNA interference pathway
    • Nykanen, A., Haley, B., and Zamore, P.D. (2001). ATP requirements and small interfering RNA structure in the RNA interference pathway. Cell 107, 309-321.
    • (2001) Cell , vol.107 , pp. 309-321
    • Nykanen, A.1    Haley, B.2    Zamore, P.D.3
  • 34
    • 0037089589 scopus 로고    scopus 로고
    • Short hairpin RNAs (shRNAs) induce sequence-specific silencing in mammalian cells
    • Paddison, P.J., Caudy, A.A., Bernstein, E., Hannon, G.J., and Conklin, D.S. (2002). Short hairpin RNAs (shRNAs) induce sequence-specific silencing in mammalian cells. Genes Dev. 16, 948-958.
    • (2002) Genes Dev. , vol.16 , pp. 948-958
    • Paddison, P.J.1    Caudy, A.A.2    Bernstein, E.3    Hannon, G.J.4    Conklin, D.S.5
  • 35
    • 0033634682 scopus 로고    scopus 로고
    • Functional anatomy of a dsRNA trigger. Differential requirement for the two trigger strands in RNA interference
    • Parrish, S., Fleenor, J., Xu, S., Mello, C., and Fire, A. (2000). Functional anatomy of a dsRNA trigger. Differential requirement for the two trigger strands in RNA interference. Mol. Cell 6, 1077-1087.
    • (2000) Mol. Cell , vol.6 , pp. 1077-1087
    • Parrish, S.1    Fleenor, J.2    Xu, S.3    Mello, C.4    Fire, A.5
  • 36
    • 0031963785 scopus 로고    scopus 로고
    • Theoretical design of antisense RNA structures substantially improves annealing kinetics and efficacy in human cells
    • Patzel, V., and Sczakiel, G. (1998). Theoretical design of antisense RNA structures substantially improves annealing kinetics and efficacy in human cells. Nat. Biotechnol. 16, 64-68.
    • (1998) Nat. Biotechnol. , vol.16 , pp. 64-68
    • Patzel, V.1    Sczakiel, G.2
  • 37
    • 0036251639 scopus 로고    scopus 로고
    • Effective expression of small interfering RNA in human cells
    • Paul, C.P., Good, P.D., Winer, I., and Engelke, D.R. (2002). Effective expression of small interfering RNA in human cells. Nat. Biotechnol. 20, 505-508.
    • (2002) Nat. Biotechnol. , vol.20 , pp. 505-508
    • Paul, C.P.1    Good, P.D.2    Winer, I.3    Engelke, D.R.4
  • 38
    • 0035052522 scopus 로고    scopus 로고
    • AP-1 repressor protein JDP-2: Inhibition of UV-mediated apoptosis through p53 down-regulation
    • Piu, F., Aronheim, A., Katz, S., and Karin, M. (2001). AP-1 repressor protein JDP-2: Inhibition of UV-mediated apoptosis through p53 down-regulation. Mol. Cell. Biol. 21, 3012-3024.
    • (2001) Mol. Cell. Biol. , vol.21 , pp. 3012-3024
    • Piu, F.1    Aronheim, A.2    Katz, S.3    Karin, M.4
  • 39
    • 0037123606 scopus 로고    scopus 로고
    • RNA silencing: The genome's immune system
    • Plasterk, R.H. (2002). RNA silencing: The genome's immune system. Science 296, 1263-1265.
    • (2002) Science , vol.296 , pp. 1263-1265
    • Plasterk, R.H.1
  • 40
    • 0032726038 scopus 로고    scopus 로고
    • Gene silencing without DNA. RNA-mediated cross-protection between viruses
    • Ratcliff, F.G., Macfarlane, S.A., and Baulcombe, D.C. (1999). Gene silencing without DNA. RNA-mediated cross-protection between viruses. Plant Cell 11, 1207-1216.
    • (1999) Plant Cell , vol.11 , pp. 1207-1216
    • Ratcliff, F.G.1    Macfarlane, S.A.2    Baulcombe, D.C.3
  • 41
    • 0025048746 scopus 로고
    • Chemical synthesis of biologically active oligoribonucleotides using beta-cyanoethyl protected ribonucleoside phosphoramidites
    • Scaringe, S.A., Francklyn, C., and Usman, N. (1990). Chemical synthesis of biologically active oligoribonucleotides using beta-cyanoethyl protected ribonucleoside phosphoramidites. Nucleic Acids Res. 18, 5433-5441.
    • (1990) Nucleic Acids Res. , vol.18 , pp. 5433-5441
    • Scaringe, S.A.1    Francklyn, C.2    Usman, N.3
  • 42
    • 0035281741 scopus 로고    scopus 로고
    • RNA interference - 2001
    • Sharp, P.A. (2001). RNA interference - 2001. Genes Dev. 15, 485-490.
    • (2001) Genes Dev. , vol.15 , pp. 485-490
    • Sharp, P.A.1
  • 46
    • 0034601488 scopus 로고    scopus 로고
    • Oncogene inactivation in a mouse model
    • Tuschl, T. (2002). Expanding small RNA interference. Nat. Biotechnol. 20, 446-448
    • Tanabe, T., Kuwabara, T., Warashina, M., Tani, K., Taira, K., and Asano, S. (2000). Oncogene inactivation in a mouse model. Nature 406, 473-474. Tuschl, T. (2002). Expanding small RNA interference. Nat. Biotechnol. 20, 446-448.
    • (2000) Nature , vol.406 , pp. 473-474
    • Tanabe, T.1    Kuwabara, T.2    Warashina, M.3    Tani, K.4    Taira, K.5    Asano, S.6
  • 47
    • 0025405838 scopus 로고
    • Flavonoid genes in petunia: Addition of a limited number of gene copies may lead to a suppression of gene expression
    • Van Der Krol, A.R., Mur, L.A., Beld, M., Mol, J.N.M., and Stuitje, A.R. (1990). Flavonoid genes in petunia: Addition of a limited number of gene copies may lead to a suppression of gene expression. Plant Cell 2, 291-299.
    • (1990) Plant Cell , vol.2 , pp. 291-299
    • Van Der Krol, A.R.1    Mur, L.A.2    Beld, M.3    Mol, J.N.M.4    Stuitje, A.R.5
  • 48
    • 0035826734 scopus 로고    scopus 로고
    • RNA-protein hybrid ribozymes that efficiently cleave any mRNA independently of the structure of the target RNA
    • Warashina, M., Kuwabara, T., Kato, Y., Sano, M., and Taira, K. (2001). RNA-protein hybrid ribozymes that efficiently cleave any mRNA independently of the structure of the target RNA. Proc. Natl. Acad. Sci. USA 98, 5572-5577.
    • (2001) Proc. Natl. Acad. Sci. USA , vol.98 , pp. 5572-5577
    • Warashina, M.1    Kuwabara, T.2    Kato, Y.3    Sano, M.4    Taira, K.5
  • 49
    • 0037197914 scopus 로고    scopus 로고
    • RNA interference by expression of short-interfering RNAs and hairpin RNAs in mammalian cells
    • Yu, J.Y., Deruiter, S.L., and Turner, D.L. (2002). RNA interference by expression of short-interfering RNAs and hairpin RNAs in mammalian cells. Proc. Natl. Acad. Sci. USA 99, 6047-6052.
    • (2002) Proc. Natl. Acad. Sci. USA , vol.99 , pp. 6047-6052
    • Yu, J.Y.1    Deruiter, S.L.2    Turner, D.L.3
  • 50
    • 0034877670 scopus 로고    scopus 로고
    • RNA interference: Listening to the sound of silence
    • Zamore, P.D. (2001). RNA interference: Listening to the sound of silence. Nat. Struct. Biol. 8, 746-750.
    • (2001) Nat. Struct. Biol. , vol.8 , pp. 746-750
    • Zamore, P.D.1


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