-
1
-
-
0037188007
-
Nuclear quantum effects and enzyme dynamics in dihydrofolate reductase catalysis
-
doi:10.1021/jp020190v
-
Agarwal, P. K., Billeter, S. R. & Hammes-Schiffer, S. 2002a Nuclear quantum effects and enzyme dynamics in dihydrofolate reductase catalysis. J. Phys. Chem. B 106, 3283-3293. (doi:10.1021/jp020190v)
-
(2002)
J. Phys. Chem. B
, vol.106
, pp. 3283-3293
-
-
Agarwal, P.K.1
Billeter, S.R.2
Hammes-Schiffer, S.3
-
2
-
-
0037022683
-
Network of coupled promoting motions in enzyme catalysis
-
doi:10.1073/pnas.052005999
-
Agarwal, P. K., Billeter, S. R., Rajagopalan, P. T. R., Benkovic, S. J. & Hammes-Schiffer, S. 2002b Network of coupled promoting motions in enzyme catalysis. Proc. Natl Acad. Sci. USA 99, 2794-2799. (doi:10.1073/pnas.052005999)
-
(2002)
Proc. Natl. Acad. Sci. USA
, vol.99
, pp. 2794-2799
-
-
Agarwal, P.K.1
Billeter, S.R.2
Rajagopalan, P.T.R.3
Benkovic, S.J.4
Hammes-Schiffer, S.5
-
3
-
-
0142195777
-
Microscale synthesis of 2-tritiated isopropanol and 4R-tritiated reduced nicotinamide adenine dinucleotide phosphate
-
doi:10.1016/j.ab.2003.08.012
-
Agrawal, N. & Kohen, A. 2003 Microscale synthesis of 2-tritiated isopropanol and 4R-tritiated reduced nicotinamide adenine dinucleotide phosphate. Anal. Biochem. 322, 179-184. (doi:10.1016/j.ab.2003.08.012)
-
(2003)
Anal. Biochem.
, vol.322
, pp. 179-184
-
-
Agrawal, N.1
Kohen, A.2
-
4
-
-
0036305753
-
Barrier passage and protein dynamics in enzymatically catalyzed reactions
-
(and many cited therein) (doi:10.1046/ j.1432-1033.2002.03021.x)
-
Antoniou, D., Caratzoulas, S., Kalyanaraman, C., Mincer, J. S. & Schwartz, S. D. 2002 Barrier passage and protein dynamics in enzymatically catalyzed reactions. Eur. J. Biochem. 269, 3103-3112. (and many cited therein) (doi:10.1046/ j.1432-1033.2002.03021.x)
-
(2002)
Eur. J. Biochem.
, vol.269
, pp. 3103-3112
-
-
Antoniou, D.1
Caratzoulas, S.2
Kalyanaraman, C.3
Mincer, J.S.4
Schwartz, S.D.5
-
5
-
-
0030722317
-
A link between protein structure and enzyme catalyzed hydrogen tunneling
-
doi:10.1073/pnas.94.24.12797
-
Bahnson, B. J., Colby, T. D., Chin, J. K., Goldstein, B. M. & Klinman, J. P. 1997 A link between protein structure and enzyme catalyzed hydrogen tunneling. Proc. Natl Acad. Sci. USA 94, 12 797-12 802. (doi:10.1073/pnas.94.24.12797)
-
(1997)
Proc. Natl. Acad. Sci. USA
, vol.94
, pp. 12797-12802
-
-
Bahnson, B.J.1
Colby, T.D.2
Chin, J.K.3
Goldstein, B.M.4
Klinman, J.P.5
-
6
-
-
0035816680
-
Deuterium isotope effects during carbon-hydrogen cleavage by trimethylamine dehydrogenase
-
doi:10.1074/jbc.M101178200
-
Basran, J., Sutcliffe, M. J. & Scrutton, N. S. 2001 Deuterium isotope effects during carbon-hydrogen cleavage by trimethylamine dehydrogenase. J. Biol Chem. 276, 24 581-24 587. (doi:10.1074/jbc.M101178200)
-
(2001)
J. Biol Chem.
, vol.276
, pp. 24581-24587
-
-
Basran, J.1
Sutcliffe, M.J.2
Scrutton, N.S.3
-
8
-
-
0041821836
-
A perspective on enzyme catalysis
-
doi:10.1126/science.1085515
-
Benkovic, S. J. & Hammes-Schiffer, S. 2003 A perspective on enzyme catalysis. Science 301, 1196-1202. (doi:10.1126/science.1085515)
-
(2003)
Science
, vol.301
, pp. 1196-1202
-
-
Benkovic, S.J.1
Hammes-Schiffer, S.2
-
9
-
-
36949079198
-
Crystalline dihydropteroylglutamic acid
-
Blakley, R. L. 1960 Crystalline dihydropteroylglutamic acid. Nature 188, 231-232.
-
(1960)
Nature
, vol.188
, pp. 231-232
-
-
Blakley, R.L.1
-
10
-
-
0346725553
-
Dynamical theory of proton tunneling transfer rates in solution: General formulation
-
doi:10.1016/0301-0104(93)85117-Q
-
Borgis, D. & Hynes, J. T. 1993 Dynamical theory of proton tunneling transfer rates in solution: general formulation. Chem. Phys. 170, 315-346. (doi:10.1016/0301-0104(93)85117-Q)
-
(1993)
Chem. Phys.
, vol.170
, pp. 315-346
-
-
Borgis, D.1
Hynes, J.T.2
-
11
-
-
33751123245
-
Curve crossing formulation for proton transfer reactions in solution
-
doi:10.1021/jp9522324
-
Borgis, D. C. & Hynes, J. T. 1996 Curve crossing formulation for proton transfer reactions in solution. J. Phys. Chem. 100, 1118-1128. (doi:10.1021/jp9522324)
-
(1996)
J. Phys. Chem.
, vol.100
, pp. 1118-1128
-
-
Borgis, D.C.1
Hynes, J.T.2
-
12
-
-
45249125423
-
A dynamical theory of nonadiabatic proton and hydrogen atom transfer reaction rates in solution
-
doi:10.1016/0009-2614(89)85059-6
-
Borgis, D. C., Lee, S. Y. & Hynes, J. T. 1989 A dynamical theory of nonadiabatic proton and hydrogen atom transfer reaction rates in solution. Chem. Phys. Lett. 162, 19-26. (doi:10.1016/0009-2614(89)85059-6)
-
(1989)
Chem. Phys. Lett.
, vol.162
, pp. 19-26
-
-
Borgis, D.C.1
Lee, S.Y.2
Hynes, J.T.3
-
13
-
-
0031443372
-
Evidence for a functional role of the dynamics of glycine-121 of Escherichia coli dihydrofolate reductase obtained from kinetic analysis of a site-directed mutant
-
doi:10.1021/bi9716231
-
Cameron, C. E. & Benkovic, S. J. 1997 Evidence for a functional role of the dynamics of glycine-121 of Escherichia coli dihydrofolate reductase obtained from kinetic analysis of a site-directed mutant. Biochemistry 36, 15 792-15 800. (doi:10.1021/bi9716231)
-
(1997)
Biochemistry
, vol.36
, pp. 15792-15800
-
-
Cameron, C.E.1
Benkovic, S.J.2
-
14
-
-
0034673157
-
Probes of a role for remote binding interactions on hydrogen tunneling in the horse liver alcohol dehydrogenase reaction
-
doi:10.1021/bi9920331
-
Chin, J. K. & Klinman, J. P. 2000 Probes of a role for remote binding interactions on hydrogen tunneling in the horse liver alcohol dehydrogenase reaction. Biochemistry 39, 1278-1284. (doi:10.1021/bi9920331)
-
(2000)
Biochemistry
, vol.39
, pp. 1278-1284
-
-
Chin, J.K.1
Klinman, J.P.2
-
15
-
-
0001191624
-
Multiple isotope effects in enzyme-catalyzed reactions
-
ed. P. F. Cook, Boca Raton, FL: CRC Press
-
Cleland, W. W. 1991 Multiple isotope effects in enzyme-catalyzed reactions. In Enzyme mechanism from isotope effects (ed. P. F. Cook), pp. 247-268. Boca Raton, FL: CRC Press.
-
(1991)
Enzyme Mechanism from Isotope Effects
, pp. 247-268
-
-
Cleland, W.W.1
-
16
-
-
85056434067
-
Enzyme mechanisms from isotope effects
-
ed. A. Kohen & H. H. Limbach, New York, NY: Taylor & Francis/CRC Press
-
Cleland, W. W. 2005 Enzyme mechanisms from isotope effects. In Isotope effects in chemistry and biology (ed. A. Kohen & H. H. Limbach), pp. 915-930. New York, NY: Taylor & Francis/CRC Press.
-
(2005)
Isotope Effects in Chemistry and Biology
, pp. 915-930
-
-
Cleland, W.W.1
-
18
-
-
0023668190
-
Construction and evaluation of the kinetic scheme associated with dihydrofolate reductase from Escherichia coli
-
doi:10.1021/bi00387a052
-
Fierke, C. A., Johnson, K. A. & Benkovic, S. J. 1987 Construction and evaluation of the kinetic scheme associated with dihydrofolate reductase from Escherichia coli. Biochemistry 26, 4085-4092. (doi:10.1021/bi00387a052)
-
(1987)
Biochemistry
, vol.26
, pp. 4085-4092
-
-
Fierke, C.A.1
Johnson, K.A.2
Benkovic, S.J.3
-
19
-
-
0037125529
-
Hydrogen tunneling in peptidylglycine-hydroxylating monooxygenase
-
doi:10.1021/ja025758s
-
Francisco, W. A., Knapp, M. J., Blackburn, N. J. & Klinman, J. P. 2002 Hydrogen tunneling in peptidylglycine-hydroxylating monooxygenase. J. Am. Chem. Soc. 124, 8194-8195. (doi:10.1021/ja025758s)
-
(2002)
J. Am. Chem. Soc.
, vol.124
, pp. 8194-8195
-
-
Francisco, W.A.1
Knapp, M.J.2
Blackburn, N.J.3
Klinman, J.P.4
-
20
-
-
0345270446
-
Oxygen and hydrogen isotope effects in an active site tyrosine to phenylalanine mutant of peptidylglycine alpha-hydroxylating monooxygenase: Mechanistic implications
-
doi:10.1021/bi020592t
-
Francisco, W. A., Blackburn, N. J. & Klinman, J. P. 2003 Oxygen and hydrogen isotope effects in an active site tyrosine to phenylalanine mutant of peptidylglycine alpha-hydroxylating monooxygenase: mechanistic implications. Biochemistry 42, 1813-1819. (doi:10.1021/bi020592t)
-
(2003)
Biochemistry
, vol.42
, pp. 1813-1819
-
-
Francisco, W.A.1
Blackburn, N.J.2
Klinman, J.P.3
-
21
-
-
0344391945
-
Reaction-path energetics and kinetics of the hydride transfer reaction catalyzed by dihydrofolate reductase
-
doi:10.1021/bi034824f
-
Garcia-Viloca, M., Truhlar, D. G. & Gao, J. 2003a Reaction-path energetics and kinetics of the hydride transfer reaction catalyzed by dihydrofolate reductase. Biochemistry 42, 13 558-13 575. (doi:10.1021/bi034824f)
-
(2003)
Biochemistry
, vol.42
, pp. 13558-13575
-
-
Garcia-Viloca, M.1
Truhlar, D.G.2
Gao, J.3
-
22
-
-
0037459224
-
Importance of substrate and cofactor polarization in the active site of dihydrofolate reductase
-
doi:10.1016/S0022-2836(03)00123-2
-
Garcia-Viloca, M., Truhlar, D. G. & Gao, J. L. 2003b Importance of substrate and cofactor polarization in the active site of dihydrofolate reductase. J. Mol. Biol. 327, 549-560. (doi:10.1016/S0022-2836(03)00123-2)
-
(2003)
J. Mol. Biol.
, vol.327
, pp. 549-560
-
-
Garcia-Viloca, M.1
Truhlar, D.G.2
Gao, J.L.3
-
23
-
-
0346726109
-
How enzymes work: Analysis by modern rate theory and computer simulations
-
doi:10.1126/science.1088172
-
Garcia-Viloca, M., Gao, J., Karplus, M. & Truhlar, D. G. 2003c How enzymes work: analysis by modern rate theory and computer simulations. Science 303, 186-195. (doi:10.1126/science.1088172)
-
(2003)
Science
, vol.303
, pp. 186-195
-
-
Garcia-Viloca, M.1
Gao, J.2
Karplus, M.3
Truhlar, D.G.4
-
24
-
-
0024513576
-
Use of deuterium-labeled glucose in evaluating the pathway of hepatic glycogen synthesis
-
doi:10.1016/0006-291X(89)90024-7
-
Goodman, M. N., Masuoka, L. K., DeRopp, J. S. & Jones, A. D. 1989 Use of deuterium-labeled glucose in evaluating the pathway of hepatic glycogen synthesis. Biochem. Biophys. Res. Commun. 159, 522-527. (doi:10.1016/0006- 291X(89)90024-7)
-
(1989)
Biochem. Biophys. Res. Commun.
, vol.159
, pp. 522-527
-
-
Goodman, M.N.1
Masuoka, L.K.2
DeRopp, J.S.3
Jones, A.D.4
-
25
-
-
0034673186
-
Kinetic studies of the mechanism of carbon-hydrogen bond breakage by the heterotetrameric sarcosine oxidase of Arthrobacter sp. 1-IN
-
doi:10.1021/bi991941v
-
Harris, R. J., Meskys, R., Sutcliffe, M. J. & Scrutton, N. S. 2000 Kinetic studies of the mechanism of carbon-hydrogen bond breakage by the heterotetrameric sarcosine oxidase of Arthrobacter sp. 1-IN. Biochemistry 39, 1189-1198. (doi:10.1021/bi991941v)
-
(2000)
Biochemistry
, vol.39
, pp. 1189-1198
-
-
Harris, R.J.1
Meskys, R.2
Sutcliffe, M.J.3
Scrutton, N.S.4
-
27
-
-
0028071545
-
A method of preparation and purification of (4R)-deuterated-reduced nicotinamide adenine dinucleotide phosphate
-
doi:10.1006/abio.1994.1411
-
Jeong, S. S. & Gready, J. E. 1994 A method of preparation and purification of (4R)-deuterated-reduced nicotinamide adenine dinucleotide phosphate. Anal. Biochem. 221, 273-277. (doi:10.1006/abio.1994.1411)
-
(1994)
Anal. Biochem.
, vol.221
, pp. 273-277
-
-
Jeong, S.S.1
Gready, J.E.2
-
28
-
-
0028601412
-
Hydrogen tunneling in the flavoenzyme monoamine oxidase B
-
doi:10. 1021/bi00253a026
-
Jonsson, T., Edmondson, D. E. & Klinman, J. P. 1994 Hydrogen tunneling in the flavoenzyme monoamine oxidase B. Biochemistry 33, 14871-14878. (doi:10. 1021/bi00253a026)
-
(1994)
Biochemistry
, vol.33
, pp. 14871-14878
-
-
Jonsson, T.1
Edmondson, D.E.2
Klinman, J.P.3
-
29
-
-
0242489464
-
Kinetic isotope effects for adiabatic proton transfer reactions in a polar environment
-
doi:10.1021/jp030893s
-
Kiefer, P. M. & Hynes, J. T. 2003 Kinetic isotope effects for adiabatic proton transfer reactions in a polar environment. J. Phys. Chem. A 107, 9022-9039. (doi:10.1021/jp030893s)
-
(2003)
J. Phys. Chem. A
, vol.107
, pp. 9022-9039
-
-
Kiefer, P.M.1
Hynes, J.T.2
-
30
-
-
84870028316
-
Interpretation of primary kinetic isotope effects for adiabatic and nonadiabatic proton transfer reactions in a polar environment
-
ed. A. Kohen & H. H. Limbach, Boca Raton, FL: Taylor & Francis/CRC Press
-
Kiefer, P. M. & Hynes, J. T. 2005 Interpretation of primary kinetic isotope effects for adiabatic and nonadiabatic proton transfer reactions in a polar environment. In Isotope effects in chemistry and biology (ed. A. Kohen & H. H. Limbach), pp. 549-578. Boca Raton, FL: Taylor & Francis/CRC Press.
-
(2005)
Isotope Effects in Chemistry and Biology
, pp. 549-578
-
-
Kiefer, P.M.1
Hynes, J.T.2
-
31
-
-
0037518552
-
Dynamic barriers and tunneling. New views of hydrogen transfer in enzyme reactions
-
Klinman, J. P. 2003 Dynamic barriers and tunneling. New views of hydrogen transfer in enzyme reactions. Pure Appl. Chem. 75, 601-608.
-
(2003)
Pure Appl. Chem.
, vol.75
, pp. 601-608
-
-
Klinman, J.P.1
-
32
-
-
0036301901
-
Environmentally coupled hydrogen tunneling. Linking catalysis to dynamics
-
doi:10.1046/j.1432-1033.2002.03022.x
-
Knapp, M. J. & Klinman, J. P. 2002 Environmentally coupled hydrogen tunneling. Linking catalysis to dynamics. Eur. J. Biochem. 269, 3113-3121. (doi:10.1046/j.1432-1033.2002.03022.x)
-
(2002)
Eur. J. Biochem.
, vol.269
, pp. 3113-3121
-
-
Knapp, M.J.1
Klinman, J.P.2
-
33
-
-
0037123216
-
Temperature-dependent isotope effects in soybean lipoxygenase-1: Correlating hydrogen tunneling with protein dynamics
-
doi:10.1021/ja012205t
-
Knapp, M. J., Rickert, K. & Klinman, J. P. 2002 Temperature-dependent isotope effects in soybean lipoxygenase-1: correlating hydrogen tunneling with protein dynamics. J. Am. Chem. Soc. 124, 3865-3874. (doi:10.1021/ja012205t)
-
(2002)
J. Am. Chem. Soc.
, vol.124
, pp. 3865-3874
-
-
Knapp, M.J.1
Rickert, K.2
Klinman, J.P.3
-
34
-
-
0141828475
-
Kinetic isotope effects as probes for hydrogen tunneling, coupled motion and dynamics contributions to enzyme catalysis
-
Kohen, A. 2003 Kinetic isotope effects as probes for hydrogen tunneling, coupled motion and dynamics contributions to enzyme catalysis. Prog. React. Kin. Mech. 28, 119-156.
-
(2003)
Prog. React. Kin. Mech.
, vol.28
, pp. 119-156
-
-
Kohen, A.1
-
35
-
-
85056422813
-
Kinetic isotope effects as probes for hydrogen tunneling in enzyme catalysis
-
ed. A. Kohen & H. H. Limbach, New York, NY: Taylor & Francis/CRC Press
-
Kohen, A. 2005 Kinetic isotope effects as probes for hydrogen tunneling in enzyme catalysis. In Isotope effects in chemistry and biology (ed. A. Kohen & H. H. Limbach), pp. 743-764. New York, NY: Taylor & Francis/CRC Press.
-
(2005)
Isotope Effects in Chemistry and Biology
, pp. 743-764
-
-
Kohen, A.1
-
36
-
-
32244446361
-
Probes for hydrogen tunneling and coupled motion in enzymatic systems
-
In press. (ed. Schowen R. L., Klinman J. P. & Hynes J. T.), Weinheim, DE: Wiley
-
Kohen, A. In press. Probes for hydrogen tunneling and coupled motion in enzymatic systems. In Biological aspects of hydrogen transfer (ed. Schowen R. L., Klinman J. P. & Hynes J. T.), Weinheim, DE: Wiley.
-
Biological Aspects of Hydrogen Transfer
-
-
Kohen, A.1
-
37
-
-
0000205312
-
Enzyme catalysis: Beyond classical paradigms
-
doi:10.1021/ar9701225
-
Kohen, A. & Klinman, J. P. 1998 Enzyme catalysis: beyond classical paradigms. Acc. Chem. Res. 31, 397-404. (doi:10.1021/ar9701225)
-
(1998)
Acc. Chem. Res.
, vol.31
, pp. 397-404
-
-
Kohen, A.1
Klinman, J.P.2
-
38
-
-
0033168713
-
Hydrogen tunneling in biology
-
doi:10.1016/S1074-5521(99)80058-1
-
Kohen, A. & Klinman, J. P. 1999 Hydrogen tunneling in biology. Chem. Biol. 6, R191-R198. (doi:10.1016/S1074-5521(99)80058-1)
-
(1999)
Chem. Biol.
, vol.6
-
-
Kohen, A.1
Klinman, J.P.2
-
39
-
-
0033519723
-
Enzyme dynamics and hydrogen tunneling in a thermophilic alcohol dehydrogenase
-
doi:10.1038/20981
-
Kohen, A., Cannio, R., Bartolucci, S. & Klinman, J. P. 1999 Enzyme dynamics and hydrogen tunneling in a thermophilic alcohol dehydrogenase. Nature 399, 496-499. (doi:10.1038/20981)
-
(1999)
Nature
, vol.399
, pp. 496-499
-
-
Kohen, A.1
Cannio, R.2
Bartolucci, S.3
Klinman, J.P.4
-
40
-
-
3042709505
-
Thermal activated protein mobility and its correlation with catalysis in thermophilic alcohol dehydrogenase
-
doi:10.1073/pnas.0403337101
-
Liang, Z. X., Lee, T., Resing, K. A., Ahn, N. G. & Klinman, J. P. 2004 Thermal activated protein mobility and its correlation with catalysis in thermophilic alcohol dehydrogenase. Proc. Natl Acad. Sci. USA 101, 9556-9561. (doi:10.1073/pnas.0403337101)
-
(2004)
Proc. Natl. Acad. Sci. USA
, vol.101
, pp. 9556-9561
-
-
Liang, Z.X.1
Lee, T.2
Resing, K.A.3
Ahn, N.G.4
Klinman, J.P.5
-
41
-
-
0141535075
-
Purification, analysis, and preservation of reduced nicotinamide adenine dinucleotide 2′-phosphate
-
doi:10.1016/j.ab.2003.07.010
-
Markham, K. A., Sikorski, R. S. & Kohen, A. 2003 Purification, analysis, and preservation of reduced nicotinamide adenine dinucleotide 2′-phosphate. Anal. Biochem. 322, 26-32. (doi:10.1016/j.ab.2003.07.010)
-
(2003)
Anal. Biochem.
, vol.322
, pp. 26-32
-
-
Markham, K.A.1
Sikorski, R.S.2
Kohen, A.3
-
43
-
-
0344925013
-
Synthesis of R and S tritiated reduced b-nicotinamide adenine dinucleotide 2′ phosphate
-
doi:10.1016/j.ab.2003.09.025
-
McCracken, J. A., Wang, L. & Kohen, A. 2003 Synthesis of R and S tritiated reduced b-nicotinamide adenine dinucleotide 2′ phosphate. Anal. Biochem. 324, 131-136. (doi:10.1016/j.ab.2003.09.025)
-
(2003)
Anal. Biochem.
, vol.324
, pp. 131-136
-
-
McCracken, J.A.1
Wang, L.2
Kohen, A.3
-
44
-
-
17044401342
-
Defining the role of active-site loop fluctuations in dihydrofolate reductase catalysis
-
doi:10.1073/pnas.0500699102
-
McElheny, D., Schnell, J. R., Lansing, J. C., Dyson, H. J. & Wright, P. E. 2005 Defining the role of active-site loop fluctuations in dihydrofolate reductase catalysis. Proc. Natl Acad. Sci. USA 102, 5032-5037. (doi:10.1073/pnas.0500699102)
-
(2005)
Proc. Natl. Acad. Sci. USA
, vol.102
, pp. 5032-5037
-
-
McElheny, D.1
Schnell, J.R.2
Lansing, J.C.3
Dyson, H.J.4
Wright, P.E.5
-
46
-
-
0032485627
-
Deletion of a highly motional residue affects formation of the Michaelis complex for Escherichia coli dihydrofolate reductase
-
doi:10.1021/bi972922t
-
Miller, G. P. & Benkovic, S. J. 1998a Deletion of a highly motional residue affects formation of the Michaelis complex for Escherichia coli dihydrofolate reductase. Biochemistry 37, 6327-6335. (doi:10.1021/bi972922t)
-
(1998)
Biochemistry
, vol.37
, pp. 6327-6335
-
-
Miller, G.P.1
Benkovic, S.J.2
-
47
-
-
0031808658
-
Stretching exercises - Flexibility in dihydrofolate reductase catalysis
-
doi:10.1016/S1074-5521(98)90616-0
-
Miller, G. P. & Benkovic, S. J. 1998b Stretching exercises - flexibility in dihydrofolate reductase catalysis. Chem. Biol. 5, R105-R113. (doi:10.1016/S1074-5521(98)90616-0)
-
(1998)
Chem. Biol.
, vol.5
-
-
Miller, G.P.1
Benkovic, S.J.2
-
48
-
-
0016832598
-
Steady-state analysis of kinetic isotope effects in enzymatic reactions
-
doi:10.1021/bi00683a013
-
Northrop, D. B. 1975 Steady-state analysis of kinetic isotope effects in enzymatic reactions. Biochemistry 14, 2644-2651. (doi:10.1021/bi00683a013)
-
(1975)
Biochemistry
, vol.14
, pp. 2644-2651
-
-
Northrop, D.B.1
-
49
-
-
0002590285
-
Determining the absolute magnitude of hydrogen isotope effects
-
ed. W. W. Cleland, M. H. O'Leary & D. B. Northrop, Baltimore, MD: University Park Press
-
Northrop, D. B. 1977 Determining the absolute magnitude of hydrogen isotope effects. In Isotope effects on enzyme-catalyzed reactions (ed. W. W. Cleland, M. H. O'Leary & D. B. Northrop), pp. 122-152. Baltimore, MD: University Park Press.
-
(1977)
Isotope Effects on Enzyme-catalyzed Reactions
, pp. 122-152
-
-
Northrop, D.B.1
-
50
-
-
0000238898
-
Intrinsic isotope effects in enzyme catalyzed reactions
-
ed. P. F. Cook, Boca Raton, FL: CRC Press
-
Northrop, D. B. 1991 Intrinsic isotope effects in enzyme catalyzed reactions. In Enzyme mechanism from isotope effects (ed. P. F. Cook), pp. 181-202. Boca Raton, FL: CRC Press.
-
(1991)
Enzyme Mechanism from Isotope Effects
, pp. 181-202
-
-
Northrop, D.B.1
-
51
-
-
0035928796
-
Backbone dynamics in dihydrofolate reductase complexes: Role of loop flexibility in the catalytic mechanism
-
doi:10.1021/bi010621k
-
Osborne, M. J., Schnell, J., Benkovic, S. J., Dyson, H. J. & Wright, P. E. 2001 Backbone dynamics in dihydrofolate reductase complexes: role of loop flexibility in the catalytic mechanism. Biochemistry 40, 9846-9859. (doi:10.1021/bi010621k)
-
(2001)
Biochemistry
, vol.40
, pp. 9846-9859
-
-
Osborne, M.J.1
Schnell, J.2
Benkovic, S.J.3
Dyson, H.J.4
Wright, P.E.5
-
52
-
-
27144461162
-
Nonperfect synchronization of reaction center rehybridization in the transition state of the hydride transfer catalyzed by dihydrofolate reductase
-
doi:10.1021/ja054170t
-
Pu, J., Ma, S., Garcia-Viloca, M., Gao, J., Truhlar, D. J. & Kohen, A. 2005 Nonperfect synchronization of reaction center rehybridization in the transition state of the hydride transfer catalyzed by dihydrofolate reductase. J. Am. Chem. Soc. 127, 14 879-14 886. (doi:10.1021/ja054170t)
-
(2005)
J. Am. Chem. Soc.
, vol.127
, pp. 14879-14886
-
-
Pu, J.1
Ma, S.2
Garcia-Viloca, M.3
Gao, J.4
Truhlar, D.J.5
Kohen, A.6
-
53
-
-
0033955055
-
Protein dynamics in enzymatic catalysis: Exploration of dihydrofolate reductase
-
doi:10.1021/ja9913838
-
Radkiewicz, J. L. & Brooks III, C. L. 2000 Protein dynamics in enzymatic catalysis: exploration of dihydrofolate reductase. J. Am. Chem. Soc. 122, 225-231. (doi:10.1021/ja9913838)
-
(2000)
J. Am. Chem. Soc.
, vol.122
, pp. 225-231
-
-
Radkiewicz, J.L.1
Brooks III, C.L.2
-
54
-
-
0037159205
-
Coupling interactions of distal residues enhance dihydrofolate reductase catalysis: Mutational effects on hydride transfer rates
-
doi:10.1021/bi026369d
-
Rajagopalan, P. T. R., Lutz, S. & Benkovic, S. J. 2002 Coupling interactions of distal residues enhance dihydrofolate reductase catalysis: mutational effects on hydride transfer rates. Biochemistry 41, 12 618-12 628. (doi:10.1021/bi026369d)
-
(2002)
Biochemistry
, vol.41
, pp. 12618-12628
-
-
Rajagopalan, P.T.R.1
Lutz, S.2
Benkovic, S.J.3
-
55
-
-
0033592315
-
Nature of hydrogen transfer in soybean lipoxygenase 1: Separation of primary and secondary isotope effects
-
doi:10.1021/bi990834y
-
Rickert, K. W. & Klinman, J. P. 1999 Nature of hydrogen transfer in soybean lipoxygenase 1: separation of primary and secondary isotope effects. Biochemistry 38, 12 218-12 228. (doi:10.1021/bi990834y)
-
(1999)
Biochemistry
, vol.38
, pp. 12218-12228
-
-
Rickert, K.W.1
Klinman, J.P.2
-
56
-
-
0038810233
-
Correlated motion and the effect of distal mutations in dihydrofolate reductase
-
doi:10.1073/pnas.1230801100
-
Rod, T. H., Radkiewicz, J. L. & Brooks, C. L. 2003 Correlated motion and the effect of distal mutations in dihydrofolate reductase. Proc. Natl Acad. Sci. USA 100, 6980-6985. (doi:10.1073/pnas.1230801100)
-
(2003)
Proc. Natl. Acad. Sci. USA
, vol.100
, pp. 6980-6985
-
-
Rod, T.H.1
Radkiewicz, J.L.2
Brooks, C.L.3
-
57
-
-
0031015737
-
Loop and subdomain movements in the mechanism of Escherichia coli dihydrofolate reductase: Crystallographic evidence
-
doi:10.1021/bi962337c
-
Sawaya, M. R. & Kraut, J. 1997 Loop and subdomain movements in the mechanism of Escherichia coli dihydrofolate reductase: crystallographic evidence. Biochemistry 36, 586-603. (doi:10.1021/bi962337c)
-
(1997)
Biochemistry
, vol.36
, pp. 586-603
-
-
Sawaya, M.R.1
Kraut, J.2
-
58
-
-
0000377896
-
Arrhenius preexponential factors for primary hydrogen kinetic isotope effects
-
doi:10.1021/ja00760a013
-
Schneider, M. E. & Stern, M. J. 1972 Arrhenius preexponential factors for primary hydrogen kinetic isotope effects. J. Am. Chem. Soc. 94, 1517-1522. (doi:10.1021/ja00760a013)
-
(1972)
J. Am. Chem. Soc.
, vol.94
, pp. 1517-1522
-
-
Schneider, M.E.1
Stern, M.J.2
-
59
-
-
0033397199
-
Enzymes in the quantum world
-
Scrutton, N. S. 1999 Enzymes in the quantum world. Biochem. Soc. Trans. 27, 767-779.
-
(1999)
Biochem. Soc. Trans.
, vol.27
, pp. 767-779
-
-
Scrutton, N.S.1
-
60
-
-
0033568523
-
New insights into enzyme catalysis. Ground state tunnelling driven by protein dynamics
-
doi:10.1046/j.1432-1327.1999.00645.x
-
Scrutton, N. S., Basran, J. & Sutcliffe, M. J. 1999 New insights into enzyme catalysis. Ground state tunnelling driven by protein dynamics. Eur. J. Biochem. 264, 666-671. (doi:10.1046/j.1432-1327.1999.00645.x)
-
(1999)
Eur. J. Biochem.
, vol.264
, pp. 666-671
-
-
Scrutton, N.S.1
Basran, J.2
Sutcliffe, M.J.3
-
61
-
-
1842830209
-
Tunneling and coupled motion in the E. coli dihydrofolate reductase catalyzed reaction
-
doi:10.1021/ja031683w
-
Sikorski, R. S., Wang, L., Markham, K. A., Rajagopalan, P. T. R., Benkovic, S. J. & Kohen, A. 2004 Tunneling and coupled motion in the E. coli dihydrofolate reductase catalyzed reaction. J. Am. Chem. Soc. 126, 4778-4779. (doi:10.1021/ja031683w)
-
(2004)
J. Am. Chem. Soc.
, vol.126
, pp. 4778-4779
-
-
Sikorski, R.S.1
Wang, L.2
Markham, K.A.3
Rajagopalan, P.T.R.4
Benkovic, S.J.5
Kohen, A.6
-
62
-
-
21644447133
-
Generalized Swain-Schaad relations including tunneling and temperature dependence
-
doi:10.1016/j.cplett.2005.05.102
-
Smedarchina, Z. & Siebrand, W. 2005 Generalized Swain-Schaad relations including tunneling and temperature dependence. Chem. Phys. Lett. 410, 370-376. (doi:10.1016/j.cplett.2005.05.102)
-
(2005)
Chem. Phys. Lett.
, vol.410
, pp. 370-376
-
-
Smedarchina, Z.1
Siebrand, W.2
-
63
-
-
24144488347
-
Tunneling dynamics of double proton transfer in formic acid and benzoic acid dimers
-
doi:10.1063/1.1868552
-
Smedarchina, Z., Fernańdez-Ramos, A. & Siebrand, W. 2005 Tunneling dynamics of double proton transfer in formic acid and benzoic acid dimers. J. Chem. Phys. 122, 134 309-134 321. (doi:10.1063/1.1868552)
-
(2005)
J. Chem. Phys.
, vol.122
, pp. 134309-134321
-
-
Smedarchina, Z.1
Fernańdez-Ramos, A.2
Siebrand, W.3
-
64
-
-
0037496294
-
Phenomenological manifestations of quantum-mechanical tunneling. II. Effect on Arrhenius pre-exponential factors for primary hydrogen kinetic isotope effects
-
doi:10.1063/1.1681448
-
Stern, M. J. & Weston, R. E. J. 1974 Phenomenological manifestations of quantum-mechanical tunneling. II. Effect on Arrhenius pre-exponential factors for primary hydrogen kinetic isotope effects. J. Chem. Phys. 60, 2808-2814. (doi:10.1063/1.1681448)
-
(1974)
J. Chem. Phys.
, vol.60
, pp. 2808-2814
-
-
Stern, M.J.1
Weston, R.E.J.2
-
65
-
-
33947478924
-
Kinetic isotope effects in the acetolyses of deuterated cyclopentyl tosylates
-
doi:10.1021/ja01542a075
-
Streitwieser, A., Jagow, R. H., Fahey, R. C. & Suzuki, F. 1958 Kinetic isotope effects in the acetolyses of deuterated cyclopentyl tosylates. J. Am. Chem. Soc. 80, 2326-2332. (doi:10.1021/ja01542a075)
-
(1958)
J. Am. Chem. Soc.
, vol.80
, pp. 2326-2332
-
-
Streitwieser, A.1
Jagow, R.H.2
Fahey, R.C.3
Suzuki, F.4
-
67
-
-
0036305396
-
A new conceptual framework for enzyme catalysis. Hydrogen tunneling coupled to enzyme dynamics in flavoprotein and quino-protein enzymes
-
(doi:10.1046/j.1432-1033.2002.03020.x) (and many cited therein)
-
Sutcliffe, M. J. & Scrutton, N. S. 2002 A new conceptual framework for enzyme catalysis. Hydrogen tunneling coupled to enzyme dynamics in flavoprotein and quino-protein enzymes. Eur. J. Biochem. 269, 3096-3102. (doi:10.1046/j.1432-1033.2002.03020.x) (and many cited therein)
-
(2002)
Eur. J. Biochem.
, vol.269
, pp. 3096-3102
-
-
Sutcliffe, M.J.1
Scrutton, N.S.2
-
68
-
-
3142681729
-
Double hydrogen tunneling revisited: The breakdown of experimental tunneling criteria
-
doi:10.1063/1.1753262
-
Tautermann, C. S., Loferer, M. J., Voegele, A. F. & Liedla, K. R. 2004 Double hydrogen tunneling revisited: the breakdown of experimental tunneling criteria. J. Chem. Phys. 120, 11 650-11 657. (doi:10.1063/1.1753262)
-
(2004)
J. Chem. Phys.
, vol.120
, pp. 11650-11657
-
-
Tautermann, C.S.1
Loferer, M.J.2
Voegele, A.F.3
Liedla, K.R.4
-
69
-
-
6344294816
-
The coupling of structural fluctuations to hydride transfer in dihydrofolate reductase
-
doi:10.1002/prot.20219
-
Thorpe, I. F. & Brooks III, C. L. 2004 The coupling of structural fluctuations to hydride transfer in dihydrofolate reductase. Proteins 57, 444-457. (doi:10.1002/prot.20219)
-
(2004)
Proteins
, vol.57
, pp. 444-457
-
-
Thorpe, I.F.1
Brooks III, C.L.2
-
70
-
-
11144328151
-
Conformational changes in the active site loops of dihydrofolate reductase during the catalytic cycle
-
doi:10.1021/bi048119y
-
Venkitakrishnan, R. P., Zaborowski, E., McElheny, D., Benkovic, S. J., Dyson, H. J. & Wright, P. E. 2004 Conformational changes in the active site loops of dihydrofolate reductase during the catalytic cycle. Biochemistry 43, 16046-16055. (doi:10.1021/bi048119y)
-
(2004)
Biochemistry
, vol.43
, pp. 16046-16055
-
-
Venkitakrishnan, R.P.1
Zaborowski, E.2
McElheny, D.3
Benkovic, S.J.4
Dyson, H.J.5
Wright, P.E.6
-
71
-
-
32244432145
-
Effects of a distal mutation on active site chemistry
-
Submitted
-
Wang, L., Tharp, S., Selzer, T., Benkovic, S. J. & Kohen, A. Submitted. Effects of a distal mutation on active site chemistry. Biochemistry 45, 1383-1392.
-
Biochemistry
, vol.45
, pp. 1383-1392
-
-
Wang, L.1
Tharp, S.2
Selzer, T.3
Benkovic, S.J.4
Kohen, A.5
-
72
-
-
0035707451
-
Dynamics of biochemical and biophysical reactions: Insight from computer simulations
-
Warshel, A. & Parson, W. W. 2001 Dynamics of biochemical and biophysical reactions: insight from computer simulations. Q. Rev. Biophys. 34, 563-679.
-
(2001)
Q. Rev. Biophys.
, vol.34
, pp. 563-679
-
-
Warshel, A.1
Parson, W.W.2
-
73
-
-
18744380681
-
Chemical theory and computation special feature: Impact of distal mutations on the network of coupled motions correlated to hydride transfer in dihydrofolate reductase
-
doi:10.1073/pnas.0408343102
-
Wong, K. F., Selzer, T., Benkovic, S. J. & Hammes-Schiffer, S. 2005 Chemical theory and computation special feature: impact of distal mutations on the network of coupled motions correlated to hydride transfer in dihydrofolate reductase. Proc. Natl Acad. Sci. USA 102, 6807-6812. (doi:10.1073/pnas. 0408343102)
-
(2005)
Proc. Natl. Acad. Sci. USA
, vol.102
, pp. 6807-6812
-
-
Wong, K.F.1
Selzer, T.2
Benkovic, S.J.3
Hammes-Schiffer, S.4
|