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note
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A KIE expression of the form in eq 1.2 neglects any mass dependence in the prefactor, the contribution of which is usually negligible, except in the case of tunneling, as well as assumes that the proton primarily resides in it ground (stretching and bending) vibrational state.
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0242434243
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0025743628
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0242517775
-
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note
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RXN = 0), in contrast to the present picture. In variational TS theory for gas phase H atom transfer, the TS significantly deviates from the MEP TS and is isotope-dependent. This feature has been calculated for PT in an enzyme, where the KIE has been diminished because the TS position significantly differs between H and D even in a symmetric case.
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(a) Alhambra, C.; Corchado, J. C.; Sánchez, M. L.; Gao, J.; Truhlar, D. G. J. Am. Chem. Soc. 2000, 122, 8197.
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0242517767
-
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note
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25 Thus, for PT within an H-bond complex, a diminished AH stretching frequency should be accounted for.
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71
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0001954833
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Ratajack, H., Orville-Thomas, W. J., Eds.; John Wiley & Sons: New York
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0242686474
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note
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For low T and a surrounding environment with minimal fluctuation capacity (cf. Limbach, H.-H.; Scherer, G.; Meschede, L.; Aguilar-Parrilla, F.; Wehrle, B.; Braun, J.; Hoelger, C.; Bendict, H.; Buntkowsky, G.; Fehlhammer, W. P.; Elguero, J.; Smith, J. A. S.; Chaudret, B. In Ultrafast Reaction Dynamics and Solvent Effects; Guaduel, Y., Rossky, P. J., Eds.; AIP Press: New York, 1994, 225), the standard picture would possibly be a more appropriate description.
-
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79
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0242686473
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note
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See the discussion in section 2 of ref 26a, where references to the early cotributions of Coulson, Mulliken, Bratos, and Warshel will be found.
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81
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0242517768
-
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note
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For an extensive reference list, see ref 26.
-
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82
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0242434260
-
-
note
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The literature concerning this solvent coordinate for both PT and ET is quite extensive. For examples, see references in ref 26.
-
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-
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83
-
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85056018125
-
-
note
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+ to water.
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85
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0001287040
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(b) Thrular, D. G.; Garrett, B. C.; Hynes, J. T. J. Phys. Chem. 1983, 87, 2664.
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0011297116
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Tapia, O., Bertran, J., Eds.; Kluwer: Amsterdam
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0032475836
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(b) Cleland, W. W.; Frey, P. A.; Gerlt, J. A. J. Biol. Chem. 1998, 273, 25529. We stress that in the present work, the "low barrier H-bond" situation occurs at an activated TS configuration in the solvent coordinate.
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(c) Smirnov, S. N.; Benedict, H.; Golubev, N. S.; Denisov, G. S.; Kreevoy, M. M.; Schowen, R. L.; Limbach, H.-H. Can. J. Chem. 1999, 77, 943.
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Cooper, A., Houben, J. L., Chien, L. C., Eds.; Plenum: New York
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(a) Hynes, J. T. In The Enzyme Catalysis Process, NATO ASI Series; Cooper, A., Houben, J. L., Chien, L. C., Eds.; Plenum: New York, 1989; pp 283-292.
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Hynes, J.T.1
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100
-
-
0242434263
-
-
note
-
This TST approximation ignores possible reductions of the rate constant associated with recrossing of the barrier in the solvent coordinate. These have been examined via simulation and theory for a model adiabatic PT reaction in ref 21c and found to be rather minor corrections. They might become more significant, however, for very asymmetric reations where the activation free energy barrier is quite low and broad, and a diffusional description of the solvent coordinate motion might be required. Even in such cases, however, any H/D isotope effect should be mild, entering only via the isotope effect on the equilibrium barrier frequency.
-
-
-
-
101
-
-
0242434262
-
-
note
-
Even for extreme asymmetric reactions where the free energy barrier is close to disappearing, this will occur first for the ground H-bond vibrational state, such that this state remains a good representation for the reaction surface.
-
-
-
-
102
-
-
0242517769
-
-
note
-
P).
-
-
-
-
104
-
-
18844424175
-
-
note
-
(b) Evans, M. G.; Polanyi, M. Trans. Faraday Soc. 1938, 34, 11. The Evans-Polanyi relations were developed mainly for gas-phase reactions but are also useful in the solution context.
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Trans. Faraday Soc.
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-
Evans, M.G.1
Polanyi, M.2
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105
-
-
0242434261
-
-
note
-
o = 0.5 have been observed in these cases and those of hydride transfer and excited-state PT, which have been addressed via empirical modifications of the FER form in eq 2.3.
-
-
-
-
108
-
-
0030887229
-
-
(c) Lee, I.S. H.; Jeoung, E. H.; Kreevoy, M. M J. Am. Chem. Soc. 1997, 119, 2722.
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Lee, I.S.H.1
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Kreevoy, M.M.3
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109
-
-
0242602482
-
-
note
-
For example, in model calculations we have included the T dependence of the dielectric constant ε of water (T = 0-100 °C; see: Riddick, J. A.; Bunger, W. B. Organic Solvents: Physical Properties and Methods of Purification, 3rd ed.; Wiley-Interscience: New York, 1970; pp 67-68) and find (i) a ∼20% reduction of the rate Arrhenius slopes and (ii) only a slight effect (<5%) on the KIE Arrhenius slope, due to an almost complete cancellation of parallel effects on H and D transfer. However, caution is required for lower polarity systems. For example, model calculations for solvents with ε in the range of 20-45 (selected to model experimental systems, i.e.: Shenderovich, I. G.; Burtsev, A. P.; Denisov, G. S.; Golubev, N. S.; Limbach, H. H. Magn. Reson. Chem. 2001, 39, S91) show that reaction asymmetries (and activation free energies) can be drastically altered, such that even the description of the PT as activated no longer holds. All of the above will be discussed in detail elsewhere.
-
-
-
-
110
-
-
0242517772
-
-
note
-
The A-B equilibrium separation will increase with increasing T due to anharmonicity, which will obviously affect a variety of properties, including reorganization energy, which implies that the intrinsic reaction barrier and KIE will change with T. However, this will not be significant in a relatively small T range.
-
-
-
-
112
-
-
0242602481
-
-
note
-
RXN behavior can be observed for the tunneling regime of this new perspective.
-
-
-
-
113
-
-
0242517773
-
-
note
-
Further, any finite reaction asymmetry would likely wipe out such a small reaction barrier.
-
-
-
-
114
-
-
0011684510
-
-
Personal communication from E. Pines. For Preliminary KIEs of photoacids, see: (a) Krishman, R.; Lee, J.; Robinson, G. W. J. Phys. Chem. J. Phys. Chem. 1990, 94, 9635.
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Krishman, R.1
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Robinson, G.W.3
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33646910175
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(b) Pines, E.; Pines, D.; Barak, T.; Magnes, B.-Z.; Tolbert, L. M.; Haubrich, J. E. Ber. Bunsen-Ges. Phys. Chem. 1998, 102, 511.
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Pines, E.1
Pines, D.2
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Magnes, B.-Z.4
Tolbert, L.M.5
Haubrich, J.E.6
-
116
-
-
0242434265
-
-
note
-
2O, and though this change in solvent introduces other possible solvent isotope effects (i.e. viscosity), the rate-limiting step in each case has been shown to be a PT step (or a series of PT steps), and thus the measured KIE corresponds to PT.
-
-
-
-
117
-
-
0242517771
-
-
note
-
This statement could possibly be used with the standard picture to explain the small symmetric reaction KIE magnitude, presented above, but the plausibility of such a bending vibration has yet to be addressed for the these systems. Furthermore, model calculations by the present authors indicate that the increase in bending frequency would not significantly alter the magnitude of the KIE.
-
-
-
-
118
-
-
0242517770
-
-
note
-
Similar nonadiabatic behavior in which bending motion was explicitly included may be found in ref 23; for the corresponding free energy curves of proton stretch and H-bond vibrational excited states, see ref 35.
-
-
-
-
119
-
-
0242686472
-
-
note
-
-1, where the parameters have been chosen tobe similar to those of ref 23e. The resulting curves are similar to those of Figure 9b, in that the ground-state reaction is nonadiabatic and bend-stretch mixing must be accounted for in excited state reactions. The former feature is largely caused by the large Q value, with some additional effect arising from the slightly bent geometry.
-
-
-
-
123
-
-
0242434264
-
-
note
-
o is thus the rate of change of the relative TS structure with respect to reaction asymmetry.
-
-
-
-
124
-
-
0242434266
-
-
note
-
RXN as well (e.g., ref 2c).
-
-
-
-
125
-
-
0242434267
-
-
note
-
Here we take the perspective introduced by Johnston for gas-phase H atom transfer, where the TS position is determined by the MEP maximum, and the TS ZPE is evaluated there. Obviously, a variational TS theory approach, where the TS position is determined by the maximum of the MEP plus the transverse ZPE, would dictate different isotopic TS positions, analogous to the procedure of the present perspective (see section 2b.2). However, even in that case, the TS position difference between isotopes will be small except when the TS position significantly deviates from the classical MEP maximum, which is indicative of a predominantly tunneling reaction.
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127
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36749110010
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(b) Hiller, C.; Manz, J.; Miller, W. H.; Römelt, J. J. Chem. Phys. 1983, 74, 3850.
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(1983)
J. Chem. Phys.
, vol.74
, pp. 3850
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Hiller, C.1
Manz, J.2
Miller, W.H.3
Römelt, J.4
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129
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0242314685
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(d) Skodje, R. T.; Truhlar, D. G.; Garrett, B. C. J. Chem. Phys. 1982, 77, 5955.
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(1982)
J. Chem. Phys.
, vol.77
, pp. 5955
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Skodje, R.T.1
Truhlar, D.G.2
Garrett, B.C.3
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133
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0242434268
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note
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RXN-independent.
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134
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0242602480
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note
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RXN range, using the full Marcus eq 4.8 (with the intrinsic barriers for H and D determined from the previous calculations) gives the exact KIE maximum, but the KIE only drops to 6.7, i.e., by only ∼2%, a very significant disparity.
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