-
1
-
-
0037022683
-
Network of coupled promoting motions in enzyme catalysis
-
Agarwal, P. K., Billeter, S. R., Rajagopalan, P. T. R., Benkovic, S. J., and Hammes-Schiffer, S. (2002) Network of coupled promoting motions in enzyme catalysis, Proc. Natl. Acad. Sci. U.S.A. 99, 2794-2799.
-
(2002)
Proc. Natl. Acad. Sci. U.S.A.
, vol.99
, pp. 2794-2799
-
-
Agarwal, P.K.1
Billeter, S.R.2
Rajagopalan, P.T.R.3
Benkovic, S.J.4
Hammes-Schiffer, S.5
-
2
-
-
0041821836
-
A perspective on enzyme catalysis
-
and references cited therein
-
Benkovic, S. J., and Hammes-Schiffer, S. (2003) A perspective on enzyme catalysis, Science 301, 1196-1202 (and references cited therein).
-
(2003)
Science
, vol.301
, pp. 1196-1202
-
-
Benkovic, S.J.1
Hammes-Schiffer, S.2
-
3
-
-
18744380681
-
Chemical theory and computation special feature: Impact of distal mutations on the network of coupled motions correlated to hydride transfer in dihydrofolate reductase
-
Wong, K. F., Selzer, T., Benkovic, S. J., and Hammes-Schiffer, S. (2005) Chemical theory and computation special feature: Impact of distal mutations on the network of coupled motions correlated to hydride transfer in dihydrofolate reductase, Proc. Natl. Acad. Sci. U.S.A. 102, 6807-6812.
-
(2005)
Proc. Natl. Acad. Sci. U.S.A.
, vol.102
, pp. 6807-6812
-
-
Wong, K.F.1
Selzer, T.2
Benkovic, S.J.3
Hammes-Schiffer, S.4
-
4
-
-
0038810233
-
Correlated motion and the effect of distal mutations in dihydrofolate reductase
-
Rod, T. H., Radkiewicz, J. L., and Brooks, C. L. (2003) Correlated motion and the effect of distal mutations in dihydrofolate reductase, Proc. Natl. Acad. Sci. U.S.A. 100, 6980-6985.
-
(2003)
Proc. Natl. Acad. Sci. U.S.A.
, vol.100
, pp. 6980-6985
-
-
Rod, T.H.1
Radkiewicz, J.L.2
Brooks, C.L.3
-
5
-
-
0037414270
-
Effect of mutation on enzyme motion in dihydrofolate reductase
-
Watney, J. B., Agarwal, P. K., and Hammes-Schiffer, S. (2003) Effect of mutation on enzyme motion in dihydrofolate reductase, J. Am. Chem. Soc. 125, 3745-3750.
-
(2003)
J. Am. Chem. Soc.
, vol.125
, pp. 3745-3750
-
-
Watney, J.B.1
Agarwal, P.K.2
Hammes-Schiffer, S.3
-
6
-
-
1842531419
-
Pivotal role of Gly 121 in dihydrofolate reductase from Escherichia coli. The altered structure of a mutant enzyme may form the basis of its diminished catalytic performance
-
Swanwick, R. S., Shrimpton, P. J., and Allemann, R. K. (2004) Pivotal role of Gly 121 in dihydrofolate reductase from Escherichia coli. The altered structure of a mutant enzyme may form the basis of its diminished catalytic performance, Biochemistry 43, 4119-4127.
-
(2004)
Biochemistry
, vol.43
, pp. 4119-4127
-
-
Swanwick, R.S.1
Shrimpton, P.J.2
Allemann, R.K.3
-
7
-
-
0344391945
-
Reaction-path energetics and kinetics of the hydride transfer reaction catalyzed by dihydrofolate reductase
-
Garcia-Viloca, M., Truhlar, D. G., and Gao, J. (2003) Reaction-path energetics and kinetics of the hydride transfer reaction catalyzed by dihydrofolate reductase, Biochemistry 42, 13558-13575.
-
(2003)
Biochemistry
, vol.42
, pp. 13558-13575
-
-
Garcia-Viloca, M.1
Truhlar, D.G.2
Gao, J.3
-
8
-
-
19944416878
-
Small temperature dependence of the kinetic isotope effect for the hydride transfer reaction catalyzed by Escherichia coli dihydrofolate reductase
-
Pu, J., Ma, S., Gao, J., and Truhlar, D. G. (2005) Small temperature dependence of the kinetic isotope effect for the hydride transfer reaction catalyzed by Escherichia coli dihydrofolate reductase, J. Phys. Chem. B 109, 8551-8556.
-
(2005)
J. Phys. Chem. B
, vol.109
, pp. 8551-8556
-
-
Pu, J.1
Ma, S.2
Gao, J.3
Truhlar, D.G.4
-
9
-
-
0023668190
-
Construction and evaluation of the kinetic scheme associated with dihydrofolate reductase from Escherichia coli
-
Fierke, C. A., Johnson, K. A., and Benkovic, S. J. (1987) Construction and evaluation of the kinetic scheme associated with dihydrofolate reductase from Escherichia coli, Biochemistry 26, 4085-4092.
-
(1987)
Biochemistry
, vol.26
, pp. 4085-4092
-
-
Fierke, C.A.1
Johnson, K.A.2
Benkovic, S.J.3
-
10
-
-
0031808658
-
Stretching exercises: Flexibility in dihydrofolate reductase catalysis
-
Miller, G. P., and Benkovic, S. J. (1998) Stretching exercises: Flexibility in dihydrofolate reductase catalysis, Chem. Biol. 5, R105-R113.
-
(1998)
Chem. Biol.
, vol.5
-
-
Miller, G.P.1
Benkovic, S.J.2
-
11
-
-
0031443372
-
Evidence for a functional role of the dynamics of glycine-121 of Escherichia coli dihydrofolate reductase obtained from kinetic analysis of a site-directed mutant
-
Cameron, C. E., and Benkovic, S. J. (1997) Evidence for a functional role of the dynamics of glycine-121 of Escherichia coli dihydrofolate reductase obtained from kinetic analysis of a site-directed mutant, Biochemistry 36, 15792-15800.
-
(1997)
Biochemistry
, vol.36
, pp. 15792-15800
-
-
Cameron, C.E.1
Benkovic, S.J.2
-
12
-
-
0035969953
-
Interloop contacts modulate ligand cycling during catalysis by Escherichia coli dihydrofolate reductase
-
Miller, G. P., Wahnon, D. C., and Benkovic, S. J. (2001) Interloop contacts modulate ligand cycling during catalysis by Escherichia coli dihydrofolate reductase, Biochemistry 40, 867-875.
-
(2001)
Biochemistry
, vol.40
, pp. 867-875
-
-
Miller, G.P.1
Wahnon, D.C.2
Benkovic, S.J.3
-
13
-
-
0032485865
-
Strength of an interloop hydrogen bond determines the kinetic pathway in catalysis by Escherichia coli dihydrofolate reductase
-
Miller, G. P., and Benkovic, S. J. (1998) Strength of an interloop hydrogen bond determines the kinetic pathway in catalysis by Escherichia coli dihydrofolate reductase, Biochemistry 37, 6336-6342.
-
(1998)
Biochemistry
, vol.37
, pp. 6336-6342
-
-
Miller, G.P.1
Benkovic, S.J.2
-
14
-
-
0026355025
-
The function of amino acid residues contacting the nicotinamide ring of NADPH in dihydrofolate reductase from Escherichia coli
-
Adams, J. A., Fierke, C. A., and Benkovic, S. J. (1991) The function of amino acid residues contacting the nicotinamide ring of NADPH in dihydrofolate reductase from Escherichia coli, Biochemistry 30, 11046-11054.
-
(1991)
Biochemistry
, vol.30
, pp. 11046-11054
-
-
Adams, J.A.1
Fierke, C.A.2
Benkovic, S.J.3
-
15
-
-
0024569994
-
Probing the functional role of threonine-113 of Escherichia coli dihydrofolate reductase for its effect on turnover efficiency, catalysis, and binding
-
Fierke, C. A., and Benkovic, S. J. (1989) Probing the functional role of threonine-113 of Escherichia coli dihydrofolate reductase for its effect on turnover efficiency, catalysis, and binding, Biochemistry 28, 478-486.
-
(1989)
Biochemistry
, vol.28
, pp. 478-486
-
-
Fierke, C.A.1
Benkovic, S.J.2
-
16
-
-
0023847706
-
Insights into enzyme function from studies on mutants of dihydrofolate reductase
-
Benkovic, S. J., Fierke, C. A., and Naylor, A. M. (1988) Insights into enzyme function from studies on mutants of dihydrofolate reductase, Science 239, 1105-1110.
-
(1988)
Science
, vol.239
, pp. 1105-1110
-
-
Benkovic, S.J.1
Fierke, C.A.2
Naylor, A.M.3
-
17
-
-
0022996850
-
Importance of a Hydrophobic residue in binding and catalysis by dihydrofolate reductase
-
Mayer, R. J., Chen, J. T., Taira, K., Fierke, C. A., and Benkovic, S. J. (1986) Importance of a Hydrophobic residue in binding and catalysis by dihydrofolate reductase, Proc. Natl. Acad. Sci. U.S.A. 83, 7718-7720.
-
(1986)
Proc. Natl. Acad. Sci. U.S.A.
, vol.83
, pp. 7718-7720
-
-
Mayer, R.J.1
Chen, J.T.2
Taira, K.3
Fierke, C.A.4
Benkovic, S.J.5
-
18
-
-
0028828696
-
Molecular basis for nonadditive mutational effects in Escherichia coli dihydrofolate reductase
-
Wagner, C. R., Huang, Z., Singleton, S. F., and Benkovic, S. J. (1995) Molecular basis for nonadditive mutational effects in Escherichia coli dihydrofolate reductase, Biochemistry 34, 15671-15680.
-
(1995)
Biochemistry
, vol.34
, pp. 15671-15680
-
-
Wagner, C.R.1
Huang, Z.2
Singleton, S.F.3
Benkovic, S.J.4
-
19
-
-
0028037407
-
Nonadditivity of mutational effects at the folate binding site of Escherichia coli dihydrofolate reductase
-
Huang, Z., Wagner, C. R., and Benkovic, S. J. (1994) Nonadditivity of mutational effects at the folate binding site of Escherichia coli dihydrofolate reductase, Biochemistry 33, 11576-11585.
-
(1994)
Biochemistry
, vol.33
, pp. 11576-11585
-
-
Huang, Z.1
Wagner, C.R.2
Benkovic, S.J.3
-
20
-
-
0026757079
-
Functional role of a mobile loop of Escherichia coli dihydrofolate reductase in transition-state stabilization
-
Li, L., Wright, P. E., Benkovic, S. J., and Falzone, C. J. (1992) Functional role of a mobile loop of Escherichia coli dihydrofolate reductase in transition-state stabilization, Biochemistry 31, 7826-7833.
-
(1992)
Biochemistry
, vol.31
, pp. 7826-7833
-
-
Li, L.1
Wright, P.E.2
Benkovic, S.J.3
Falzone, C.J.4
-
21
-
-
0031015737
-
Loop and subdomain movements in the mechanism of Escherichia coli dihydrofolate reductase: Crystallographic evidence
-
Sawaya, M. R., and Kraut, J. (1997) Loop and subdomain movements in the mechanism of Escherichia coli dihydrofolate reductase: Crystallographic evidence, Biochemistry 36, 586-603.
-
(1997)
Biochemistry
, vol.36
, pp. 586-603
-
-
Sawaya, M.R.1
Kraut, J.2
-
22
-
-
0029102089
-
Dynamics of the dihydrofolate reductase-folate complex: Catalytic sites and regions known to undergo conformational change exhibit diverse dynamical features
-
Epstein, D. M., Benkovic, S. J., and Wright, P. E. (1995) Dynamics of the dihydrofolate reductase-folate complex: Catalytic sites and regions known to undergo conformational change exhibit diverse dynamical features, Biochemistry 34, 11037-11048.
-
(1995)
Biochemistry
, vol.34
, pp. 11037-11048
-
-
Epstein, D.M.1
Benkovic, S.J.2
Wright, P.E.3
-
23
-
-
0035928796
-
Backbone dynamics in dihydrofolate reductase complexes: Role of loop flexibility in the catalytic mechanism
-
Osborne, M. J., Schnell, J., Benkovic, S. J., Dyson, H. J., and Wright, P. E. (2001) Backbone dynamics in dihydrofolate reductase complexes: Role of loop flexibility in the catalytic mechanism, Biochemistry 40, 9846-9859.
-
(2001)
Biochemistry
, vol.40
, pp. 9846-9859
-
-
Osborne, M.J.1
Schnell, J.2
Benkovic, S.J.3
Dyson, H.J.4
Wright, P.E.5
-
24
-
-
17044401342
-
Defining the role of active-site loop fluctuations in dihydrofolate reductase catalysis
-
McElheny, D., Schnell, J. R., Lansing, J. C., Dyson, H. J., and Wright, P. E. (2005) Defining the role of active-site loop fluctuations in dihydrofolate reductase catalysis, Proc. Natl. Acad. Sci. U.S.A. 102, 5032-5037.
-
(2005)
Proc. Natl. Acad. Sci. U.S.A.
, vol.102
, pp. 5032-5037
-
-
McElheny, D.1
Schnell, J.R.2
Lansing, J.C.3
Dyson, H.J.4
Wright, P.E.5
-
25
-
-
0029971560
-
A large compressibility change of protein induced by a single amino acid substitution
-
Gekko, K., Tamura, Y., Ohmae, E., Hayashi, H., Kagamiyama, H., and Ueno, H. (1996) A large compressibility change of protein induced by a single amino acid substitution, Protein Sci. 5, 542-545.
-
(1996)
Protein Sci.
, vol.5
, pp. 542-545
-
-
Gekko, K.1
Tamura, Y.2
Ohmae, E.3
Hayashi, H.4
Kagamiyama, H.5
Ueno, H.6
-
26
-
-
0027998347
-
Point mutations at glycine-121 of Escherichia coli dihydrofolate reductase: Important roles of a flexible loop in the stability and function
-
Gekko, K., Kunori, Y., Takeuchi, H., Ichihara, S., and Kodama, M. (1994) Point mutations at glycine-121 of Escherichia coli dihydrofolate reductase: Important roles of a flexible loop in the stability and function, J. Biochem. 116, 34-41.
-
(1994)
J. Biochem.
, vol.116
, pp. 34-41
-
-
Gekko, K.1
Kunori, Y.2
Takeuchi, H.3
Ichihara, S.4
Kodama, M.5
-
27
-
-
32244438861
-
Analysis of loop function of dihydrofolate reductase
-
Gekko, K., and Ohmae, E. (2004) Analysis of loop function of dihydrofolate reductase, Seibutsu Butsuri 44, 70-74.
-
(2004)
Seibutsu Butsuri
, vol.44
, pp. 70-74
-
-
Gekko, K.1
Ohmae, E.2
-
28
-
-
0037188007
-
Nuclear quantum effects and enzyme dynamics in dihydrofolate reductase catalysis
-
Agarwal, P. K., Billeter, S. R., and Hammes-Schiffer, S. (2002) Nuclear quantum effects and enzyme dynamics in dihydrofolate reductase catalysis, J. Phys. Chem. B 106, 3283-3293.
-
(2002)
J. Phys. Chem. B
, vol.106
, pp. 3283-3293
-
-
Agarwal, P.K.1
Billeter, S.R.2
Hammes-Schiffer, S.3
-
29
-
-
6344294816
-
The coupling of structural fluctuations to hydride transfer in dihydrofolate reductase
-
Thorpe, I. F., and Brooks, C. L., III (2004) The coupling of structural fluctuations to hydride transfer in dihydrofolate reductase, Proteins 57, 444-457.
-
(2004)
Proteins
, vol.57
, pp. 444-457
-
-
Thorpe, I.F.1
Brooks III, C.L.2
-
30
-
-
0037159205
-
Coupling interactions of distal residues enhance dihydrofolate reductase catalysis: Mutational effects on hydride transfer rates
-
Rajagopalan, P. T. R., Stefan, L., and Benkovic, S. J. (2002) Coupling interactions of distal residues enhance dihydrofolate reductase catalysis: Mutational effects on hydride transfer rates, Biochemistry 41, 12618-12628.
-
(2002)
Biochemistry
, vol.41
, pp. 12618-12628
-
-
Rajagopalan, P.T.R.1
Stefan, L.2
Benkovic, S.J.3
-
31
-
-
1842830209
-
Tunneling and coupled motion in the E. coli dihydrofolate reductase catalysis
-
Sikorski, R. S., Wang, L., Markham, K. A., Rajagopalan, P. T. R., Benkovic, S. J., and Kohen, A. (2004) Tunneling and coupled motion in the E. coli dihydrofolate reductase catalysis, J. Am. Chem. Soc. 126, 4778-4779.
-
(2004)
J. Am. Chem. Soc.
, vol.126
, pp. 4778-4779
-
-
Sikorski, R.S.1
Wang, L.2
Markham, K.A.3
Rajagopalan, P.T.R.4
Benkovic, S.J.5
Kohen, A.6
-
32
-
-
36949079198
-
Crystalline dihydropteroylglutamic acid
-
Blakley, R. L. (1960) Crystalline dihydropteroylglutamic acid, Nature 188, 231-232.
-
(1960)
Nature
, vol.188
, pp. 231-232
-
-
Blakley, R.L.1
-
33
-
-
0024513576
-
Use of deuterium-labeled glucose in evaluating the pathway of hepatic glycogen synthesis
-
Goodman, M. N., Masuoka, L. K., DeRopp, J. S., and Jones, A. D. (1989) Use of deuterium-labeled glucose in evaluating the pathway of hepatic glycogen synthesis, Biochem. Biophys. Res. Commun. 159, 522-527.
-
(1989)
Biochem. Biophys. Res. Commun.
, vol.159
, pp. 522-527
-
-
Goodman, M.N.1
Masuoka, L.K.2
DeRopp, J.S.3
Jones, A.D.4
-
34
-
-
0028071545
-
A method of preparation and purification of (4R)-deuterated-reduced nicotinamide adenine dinucleotide phosphate
-
Jeong, S. S., and Gready, J. E. (1994) A method of preparation and purification of (4R)-deuterated-reduced nicotinamide adenine dinucleotide phosphate, Anal. Biochem. 221, 273-277.
-
(1994)
Anal. Biochem.
, vol.221
, pp. 273-277
-
-
Jeong, S.S.1
Gready, J.E.2
-
35
-
-
0142195777
-
Microscale synthesis of 2-tritiated 2-propanol and 4-R tritiated reduced nicotinamide adenine dinucleotide phosphate
-
Agrawal, N., and Kohen, A. (2003) Microscale synthesis of 2-tritiated 2-propanol and 4-R tritiated reduced nicotinamide adenine dinucleotide phosphate, Anal. Biochem. 322, 179-184.
-
(2003)
Anal. Biochem.
, vol.322
, pp. 179-184
-
-
Agrawal, N.1
Kohen, A.2
-
36
-
-
0344925013
-
Synthesis of R and S tritiated reduced b-nicotinamide adenine dinucleotide 2′-phosphate
-
McCracken, J. A., Wang, L., and Kohen, A. (2003) Synthesis of R and S tritiated reduced b-nicotinamide adenine dinucleotide 2′-phosphate, Anal. Biochem. 324, 131-136.
-
(2003)
Anal. Biochem.
, vol.324
, pp. 131-136
-
-
McCracken, J.A.1
Wang, L.2
Kohen, A.3
-
38
-
-
0141535075
-
Purification, analysis, and preservation of reduced nicotinamide adenine dinucleotide 2′-phosphate
-
Markham, K. A., Sikorski, R. S., and Kohen, A. (2003) Purification, analysis, and preservation of reduced nicotinamide adenine dinucleotide 2′-phosphate, Anal. Biochem. 322, 26-32.
-
(2003)
Anal. Biochem.
, vol.322
, pp. 26-32
-
-
Markham, K.A.1
Sikorski, R.S.2
Kohen, A.3
-
40
-
-
85056434067
-
Enzyme mechanisms from isotope effects
-
(Kohen, A., and Limbach, H. H., Eds.), Taylor & Francis, CRC Press, Boca Raton, FL
-
Cleland, W. W. (2005) Enzyme mechanisms from isotope effects, in Isotope effects in chemistry and biology (Kohen, A., and Limbach, H. H., Eds.) pp 915-930, Taylor & Francis, CRC Press, Boca Raton, FL.
-
(2005)
Isotope Effects in Chemistry and Biology
, pp. 915-930
-
-
Cleland, W.W.1
-
41
-
-
0141828475
-
Kinetic isotope effects as probes for hydrogen tunneling, coupled motion and dynamics contributions to enzyme catalysis
-
Kohen, A. (2003) Kinetic isotope effects as probes for hydrogen tunneling, coupled motion and dynamics contributions to enzyme catalysis, Prog. React. Kinet. Mech. 28, 119-156.
-
(2003)
Prog. React. Kinet. Mech.
, vol.28
, pp. 119-156
-
-
Kohen, A.1
-
42
-
-
0016832598
-
Steady-state analysis of kinetic isotope effects in enzymatic reactions
-
Northrop, D. B. (1975) Steady-state analysis of kinetic isotope effects in enzymatic reactions, Biochemistry 14, 2644-2651.
-
(1975)
Biochemistry
, vol.14
, pp. 2644-2651
-
-
Northrop, D.B.1
-
43
-
-
0002590285
-
Determining the absolute magnitude of hydrogen isotope effects
-
(Cleland, W. W., O'Leary, M. H., and Northrop, D. B., Eds.), University Park Press, Baltimore
-
Northrop, D. B. (1977) Determining the absolute magnitude of hydrogen isotope effects, in Isotope effects on enzyme-catalyzed reactions (Cleland, W. W., O'Leary, M. H., and Northrop, D. B., Eds.) pp 122-152, University Park Press, Baltimore.
-
(1977)
Isotope Effects on Enzyme-Catalyzed Reactions
, pp. 122-152
-
-
Northrop, D.B.1
-
44
-
-
0000238898
-
Intrinsic isotope effects in enzyme catalyzed reactions
-
(Cook, P. P., Ed.), CRC Press, Boca Raton, FL
-
Northrop, D. B. (1991) Intrinsic isotope effects in enzyme catalyzed reactions, in Enzyme mechanism from isotope effects (Cook, P. P., Ed.) pp 181-202, CRC Press, Boca Raton, FL.
-
(1991)
Enzyme Mechanism from Isotope Effects
, pp. 181-202
-
-
Northrop, D.B.1
-
45
-
-
33947478924
-
Kinetic isotope effects in the acetolyses of deuterated cyclopentyl tosylates
-
Streiwiester, A., Jagow, R. H., Fahey, R. C., and Suzuki, F. (1958) Kinetic isotope effects in the acetolyses of deuterated cyclopentyl tosylates, J. Am. Chem. Soc. 80, 2326-2332.
-
(1958)
J. Am. Chem. Soc.
, vol.80
, pp. 2326-2332
-
-
Streiwiester, A.1
Jagow, R.H.2
Fahey, R.C.3
Suzuki, F.4
-
46
-
-
0037125529
-
Hydrogen tunneling in peptidylglycine-hydroxylating monooxygenase
-
Franciso, W. A., Knapp, M. J., Blackburn, N. J., and Klinman, J. P. (2002) Hydrogen tunneling in peptidylglycine-hydroxylating monooxygenase, J. Am. Chem. Soc. 124, 8194-8195.
-
(2002)
J. Am. Chem. Soc.
, vol.124
, pp. 8194-8195
-
-
Franciso, W.A.1
Knapp, M.J.2
Blackburn, N.J.3
Klinman, J.P.4
-
47
-
-
0028601412
-
Hydrogen tunneling in the flavoenzyme monoamine oxidase B
-
Jonsson, T., Edmondson, D. E., and Klinman, J. P. (1994) Hydrogen tunneling in the flavoenzyme monoamine oxidase B, Biochemistry 33, 14871-14878.
-
(1994)
Biochemistry
, vol.33
, pp. 14871-14878
-
-
Jonsson, T.1
Edmondson, D.E.2
Klinman, J.P.3
-
48
-
-
0033519723
-
Enzyme dynamics and hydrogen tunneling in a thermophilic alcohol dehydrogenase
-
Kohen, A., Cannio, R., Bartolucci, S., and Klinman, J. P. (1999) Enzyme dynamics and hydrogen tunneling in a thermophilic alcohol dehydrogenase, Nature 399, 496-499.
-
(1999)
Nature
, vol.399
, pp. 496-499
-
-
Kohen, A.1
Cannio, R.2
Bartolucci, S.3
Klinman, J.P.4
-
49
-
-
0030722317
-
A link between protein structure and enzyme catalyzed hydrogen tunneling
-
Bahnson, B. J., Colby, T. D., Chin, J. K., Goldstein, B. M., and Klinman, J. P. (1997) A link between protein structure and enzyme catalyzed hydrogen tunneling, Proc. Natl. Acad. Sci. U.S.A. 94, 12797-12802.
-
(1997)
Proc. Natl. Acad. Sci. U.S.A.
, vol.94
, pp. 12797-12802
-
-
Bahnson, B.J.1
Colby, T.D.2
Chin, J.K.3
Goldstein, B.M.4
Klinman, J.P.5
-
50
-
-
0034673157
-
Probes of a role for remote binding interactions on hydrogen tunneling in the horse liver alcohol dehydrogenase reaction
-
Chin, J. K., and Klinman, J. P. (2000) Probes of a role for remote binding interactions on hydrogen tunneling in the horse liver alcohol dehydrogenase reaction, Biochemistry 39, 1278-1284.
-
(2000)
Biochemistry
, vol.39
, pp. 1278-1284
-
-
Chin, J.K.1
Klinman, J.P.2
-
51
-
-
0242489464
-
Kinetic isotope effects for adiabatic proton-transfer reactions in a polar environment
-
Kiefer, P. M., and Hynes, J. T. (2003) Kinetic isotope effects for adiabatic proton-transfer reactions in a polar environment, J. Phys. Chem. A 107, 9022-9039.
-
(2003)
J. Phys. Chem. A
, vol.107
, pp. 9022-9039
-
-
Kiefer, P.M.1
Hynes, J.T.2
-
52
-
-
84870028316
-
Interpretation of primary kinetic isotope effects for adiabatic and nonadiabatic proton-transfer reactions in a polar environment
-
(Kohen, A., and Limbach, H. H., Eds.), Taylor & Francis, CRC Press, Boca Raton, FL
-
Kiefer, P. M., and Hynes, J. T. (2006) Interpretation of primary kinetic isotope effects for adiabatic and nonadiabatic proton-transfer reactions in a polar environment, in Isotope effects in chemistry and biology (Kohen, A., and Limbach, H. H., Eds.) pp 549-578, Taylor & Francis, CRC Press, Boca Raton, FL.
-
(2006)
Isotope Effects in Chemistry and Biology
, pp. 549-578
-
-
Kiefer, P.M.1
Hynes, J.T.2
-
53
-
-
3142681729
-
Double hydrogen tunneling revisited: The breakdown of experimental tunneling criteria
-
Tautermann, C. S., Loferer, M. J., Voegele, A. F., and Liedla, K. R. (2004) Double hydrogen tunneling revisited: The breakdown of experimental tunneling criteria, J. Chem. Phys. 120, 11650-11657.
-
(2004)
J. Chem. Phys.
, vol.120
, pp. 11650-11657
-
-
Tautermann, C.S.1
Loferer, M.J.2
Voegele, A.F.3
Liedla, K.R.4
-
54
-
-
24144488347
-
Tunneling dynamics of double proton transfer in formic acid and benzoic acid dimers
-
Smedarchina, Z., Fernández-Ramos, A., and Siebrand, W. (2005) Tunneling dynamics of double proton transfer in formic acid and benzoic acid dimers, J. Chem. Phys. 122, 134309-134321.
-
(2005)
J. Chem. Phys.
, vol.122
, pp. 134309-134321
-
-
Smedarchina, Z.1
Fernández-Ramos, A.2
Siebrand, W.3
-
55
-
-
21644447133
-
Generalized Swain-Schaad relations including tunneling and temperature dependence
-
Smedarchina, Z., and Siebrand, W. (2005) Generalized Swain-Schaad relations including tunneling and temperature dependence, Chem. Phys. Lett. 410, 370-376.
-
(2005)
Chem. Phys. Lett.
, vol.410
, pp. 370-376
-
-
Smedarchina, Z.1
Siebrand, W.2
-
56
-
-
0032485627
-
Deletion of a highly motional residue affects formation of the Michaelis complex for Escherichia coli dihydrofolate reductase
-
Miller, G. P., and Benkovic, S. J. (1998) Deletion of a highly motional residue affects formation of the Michaelis complex for Escherichia coli dihydrofolate reductase, Biochemistry 37, 6327-6335.
-
(1998)
Biochemistry
, vol.37
, pp. 6327-6335
-
-
Miller, G.P.1
Benkovic, S.J.2
-
57
-
-
32244446361
-
Probes for hydrogen tunneling and coupled motion in enzymatic systems
-
(Schowen, R. L., Klinman, J. P., and Hynes, J. T., Eds.) Wiley-VCH, Weinheim, Germany (in press)
-
Kohen, A. (2006) Probes for hydrogen tunneling and coupled motion in enzymatic systems, in Biological aspects of hydrogen transfer (Schowen, R. L., Klinman, J. P., and Hynes, J. T., Eds.) Wiley-VCH, Weinheim, Germany (in press).
-
(2006)
Biological Aspects of Hydrogen Transfer
-
-
Kohen, A.1
-
58
-
-
0001191624
-
Multiple isotope effects in enzyme-catalyzed reactions
-
(Cook, P. F., Ed.), CRC Press, Boca Raton, FL
-
Cleland, W. W. (1991) Multiple isotope effects in enzyme-catalyzed reactions, in Enzyme Mechanism from Isotope Effects (Cook, P. F., Ed.) pp 247-268, CRC Press, Boca Raton, FL.
-
(1991)
Enzyme Mechanism from Isotope Effects
, pp. 247-268
-
-
Cleland, W.W.1
-
59
-
-
11144328151
-
Conformational changes in the active site loops of dihydrofolate reductase during the catalytic cycle
-
Venkitakrishnan, R. P., Zaborowski, E., McElheny, D., Benkovic, S. J., Dyson, H. J., and Wright, P. E. (2004) Conformational changes in the active site loops of dihydrofolate reductase during the catalytic cycle, Biochemistry 43, 16046-16055.
-
(2004)
Biochemistry
, vol.43
, pp. 16046-16055
-
-
Venkitakrishnan, R.P.1
Zaborowski, E.2
McElheny, D.3
Benkovic, S.J.4
Dyson, H.J.5
Wright, P.E.6
-
60
-
-
0142091405
-
The near attack conformation approach to the study of the chorismate to prephenate reaction
-
Hur, S., and Bruice, T. C. (2003) The near attack conformation approach to the study of the chorismate to prephenate reaction, Proc. Natl. Acad. Sci. U.S.A. 100, 12015-12020.
-
(2003)
Proc. Natl. Acad. Sci. U.S.A.
, vol.100
, pp. 12015-12020
-
-
Hur, S.1
Bruice, T.C.2
-
61
-
-
0142091428
-
How an enzyme surmounts the activation energy barrier
-
Schowen, R. L. (2003) How an enzyme surmounts the activation energy barrier, Proc. Natl. Acad. Sci. U.S.A. 100, 11931-11932.
-
(2003)
Proc. Natl. Acad. Sci. U.S.A.
, vol.100
, pp. 11931-11932
-
-
Schowen, R.L.1
-
62
-
-
23244446189
-
A definitive mechanism for chorismate mutase
-
Zhang, X., Zhang, X., and Bruice, T. C. (2005) A definitive mechanism for chorismate mutase, Biochemistry 44, 10443-10448.
-
(2005)
Biochemistry
, vol.44
, pp. 10443-10448
-
-
Zhang, X.1
Zhang, X.2
Bruice, T.C.3
-
63
-
-
0041761262
-
Hydride transfer during catalysis by dihydrofolate reductase from Thermotoga maritima
-
Maglia, G., Javed, M. H., and Allemann, R. K. (2003) Hydride transfer during catalysis by dihydrofolate reductase from Thermotoga maritima, Biochem. J. 374, 529-535.
-
(2003)
Biochem. J.
, vol.374
, pp. 529-535
-
-
Maglia, G.1
Javed, M.H.2
Allemann, R.K.3
-
65
-
-
0006457869
-
Phenomenological manifestations of quantum-mechanical tunneling. III. Effect on relative tritium-deuterium kinetic isotope effects
-
Stern, M. J., and Weston, R. E., Jr. (1974) Phenomenological manifestations of quantum-mechanical tunneling. III. Effect on relative tritium-deuterium kinetic isotope effects, J. Chem. Phys. 60, 2815-2821.
-
(1974)
J. Chem. Phys.
, vol.60
, pp. 2815-2821
-
-
Stern, M.J.1
Weston Jr., R.E.2
-
66
-
-
0000377896
-
Arrhenius preexponential factors for primary hydrogen kinetic isotope effects
-
Schneider, M. E., and Stern, M. J. (1972) Arrhenius preexponential factors for primary hydrogen kinetic isotope effects, J. Am. Chem. Soc. 94, 1517-1522.
-
(1972)
J. Am. Chem. Soc.
, vol.94
, pp. 1517-1522
-
-
Schneider, M.E.1
Stern, M.J.2
-
67
-
-
85056422813
-
Kinetic isotope effects as probes for hydrogen tunneling in enzyme catalysis, Isotope
-
(Kohen, A., and Limbach, H. H., Eds.), Taylor & Francis, CRC Press, Boca Raton, FL
-
Kohen, A. (2006) Kinetic isotope effects as probes for hydrogen tunneling in enzyme catalysis, in Isotope effects in chemistry and biology (Kohen, A., and Limbach, H. H., Eds.) pp 743-764, Taylor & Francis, CRC Press, Boca Raton, FL.
-
(2006)
Effects in Chemistry and Biology
, pp. 743-764
-
-
Kohen, A.1
-
68
-
-
0033168713
-
Hydrogen tunneling in biology
-
Kohen, A., and Klinman, J. P. (1999) Hydrogen tunneling in biology, Chem. Biol. 6, R191-R198.
-
(1999)
Chem. Biol.
, vol.6
-
-
Kohen, A.1
Klinman, J.P.2
-
69
-
-
0000205312
-
Enzyme catalysis: Beyond classical paradigms
-
Kohen, A., and Klinman, J. P. (1998) Enzyme catalysis: Beyond classical paradigms, Acc. Chem. Res. 31, 397-404.
-
(1998)
Acc. Chem. Res.
, vol.31
, pp. 397-404
-
-
Kohen, A.1
Klinman, J.P.2
-
70
-
-
23144440798
-
Electron, proton and related transfers
-
Marcus, R. A. (1982) Electron, proton and related transfers, Faraday Discuss. Chem. Soc. 74, 7-15.
-
(1982)
Faraday Discuss. Chem. Soc.
, vol.74
, pp. 7-15
-
-
Marcus, R.A.1
-
71
-
-
0022004980
-
Electron transfer in chemistry and biology
-
Marcus, R. A., and Sutin, N. (1985) Electron transfer in chemistry and biology, Biochim. Biophys. Acta 811, 265-322.
-
(1985)
Biochim. Biophys. Acta
, vol.811
, pp. 265-322
-
-
Marcus, R.A.1
Sutin, N.2
-
72
-
-
0001863950
-
Transition State Theory
-
(Bernasconi, C. F., Ed.), John Wiley and Sons, New York
-
Kreevoy, M. M., and Truhlar, D. G. (1986) Transition State Theory, in Investigation of rates and mechanisms of reactions (Bernasconi, C. F., Ed.) pp 13-95, John Wiley and Sons, New York.
-
(1986)
Investigation of Rates and Mechanisms of Reactions
, pp. 13-95
-
-
Kreevoy, M.M.1
Truhlar, D.G.2
-
74
-
-
0036301901
-
Environmentally coupled hydrogen tunneling: Linking catalysis to dynamics
-
Knapp, M. J., and Klinman, J. P. (2002) Environmentally coupled hydrogen tunneling: Linking catalysis to dynamics, Eur. J. Biochem. 269, 3113-3121.
-
(2002)
Eur. J. Biochem.
, vol.269
, pp. 3113-3121
-
-
Knapp, M.J.1
Klinman, J.P.2
-
75
-
-
0037123216
-
Temperature-dependent isotope efffects in soybean liposygenase-1: Correlating hydrogen tunneling with protein dynamics
-
Knapp, M. J., Rickert, K., and Klinman, J. P. (2002) Temperature- dependent isotope efffects in soybean liposygenase-1: Correlating hydrogen tunneling with protein dynamics, J. Am. Chem. Soc. 124, 3865-3874.
-
(2002)
J. Am. Chem. Soc.
, vol.124
, pp. 3865-3874
-
-
Knapp, M.J.1
Rickert, K.2
Klinman, J.P.3
-
76
-
-
0346725553
-
Dynamical theory of proton tunneling transfer rates in solution: General formulation
-
Borgis, D. C., and Hynes, J. T. (1993) Dynamical theory of proton tunneling transfer rates in solution: General formulation, Chem. Phys. 170, 315-346.
-
(1993)
Chem. Phys.
, vol.170
, pp. 315-346
-
-
Borgis, D.C.1
Hynes, J.T.2
-
77
-
-
33751123245
-
Curve crossing formulation for proton-transfer reactions in solution
-
Borgis, D. C., and Hynes, J. T. (1996) Curve crossing formulation for proton-transfer reactions in solution, J. Phys. Chem. 100, 1118-11128.
-
(1996)
J. Phys. Chem.
, vol.100
, pp. 1118-11128
-
-
Borgis, D.C.1
Hynes, J.T.2
-
78
-
-
45249125423
-
A dynamical theory of nonadiabatic proton and hydrogen atom transfer reaction rates in solution
-
Borgis, D. C., Lee, S. Y., and Hynes, J. T. (1989) A dynamical theory of nonadiabatic proton and hydrogen atom transfer reaction rates in solution, Chem. Phys. Lett. 162, 19-26.
-
(1989)
Chem. Phys. Lett.
, vol.162
, pp. 19-26
-
-
Borgis, D.C.1
Lee, S.Y.2
Hynes, J.T.3
-
79
-
-
0036305396
-
A new conceptual framework for enzyme catalysis. Hydrogen tunning coupled to enzyme dynamics in flavoprotein and quinoprotein enzymes
-
Sutcliffe, M. J., and Scrutton, N. S. (2002) A new conceptual framework for enzyme catalysis. Hydrogen tunning coupled to enzyme dynamics in flavoprotein and quinoprotein enzymes, Eur. J. Biochem. 269, 3096-3102.
-
(2002)
Eur. J. Biochem.
, vol.269
, pp. 3096-3102
-
-
Sutcliffe, M.J.1
Scrutton, N.S.2
-
80
-
-
0036305753
-
Barrier passage and protein dynamics in enzymatically catalyzed reactions
-
Antoniou, D., Caratzoulas, S., Kalyanaraman, C., Mincer, J. S., and Schwartz, S. D. (2002) Barrier passage and protein dynamics in enzymatically catalyzed reactions, Eur. J. Biochem. 269, 3103-3112.
-
(2002)
Eur. J. Biochem.
, vol.269
, pp. 3103-3112
-
-
Antoniou, D.1
Caratzoulas, S.2
Kalyanaraman, C.3
Mincer, J.S.4
Schwartz, S.D.5
-
81
-
-
0035846401
-
The role of collective solvent coordinates and nonequilibrium solvation in charge-transfer reactions
-
Schenter, G. K., Garrett, B. C., and Truhlar, D. G. (2001) The role of collective solvent coordinates and nonequilibrium solvation in charge-transfer reactions, J. Phys. Chem. B 105, 9672-9685.
-
(2001)
J. Phys. Chem. B
, vol.105
, pp. 9672-9685
-
-
Schenter, G.K.1
Garrett, B.C.2
Truhlar, D.G.3
-
82
-
-
0033305793
-
Proton and hydrogen atom tunneling in hydrolytic and redox enzyme catalysis
-
Kuznetsov, A. M., and Ulstrup, J. (1999) Proton and hydrogen atom tunneling in hydrolytic and redox enzyme catalysis, Can. J. Chem. 77, 1085-1096.
-
(1999)
Can. J. Chem.
, vol.77
, pp. 1085-1096
-
-
Kuznetsov, A.M.1
Ulstrup, J.2
-
83
-
-
0346726109
-
How enzymes work: Analysis by modern rate theory and computer simulations
-
Garcia-Viloca, M., Gao, J., Karplus, M., and Truhlar, D. G. (2003) How enzymes work: Analysis by modern rate theory and computer simulations, Science 303, 186-195.
-
(2003)
Science
, vol.303
, pp. 186-195
-
-
Garcia-Viloca, M.1
Gao, J.2
Karplus, M.3
Truhlar, D.G.4
-
84
-
-
84962477148
-
Structure/function correlations of enzymes using MM, QM/MM and related approaches: Methods, concepts, pitfalls and current progress
-
Shurki, A., and Warshel, A. (2003) Structure/function correlations of enzymes using MM, QM/MM and related approaches: Methods, concepts, pitfalls and current progress, Adv. Protein Chem. 66, 249-313.
-
(2003)
Adv. Protein Chem.
, vol.66
, pp. 249-313
-
-
Shurki, A.1
Warshel, A.2
-
85
-
-
2442548491
-
Proton-coupled electron transfer in soybean lipoxygenase
-
Hatcher, E., Soudackov, A. V., and Hammes-Schiffer, S. (2004) Proton-coupled electron transfer in soybean lipoxygenase, J. Am. Chem. Soc. 126, 5763-5775.
-
(2004)
J. Am. Chem. Soc.
, vol.126
, pp. 5763-5775
-
-
Hatcher, E.1
Soudackov, A.V.2
Hammes-Schiffer, S.3
-
86
-
-
0035940264
-
Energetics and dynamics of enzymatic reactions
-
Villa, J., and Warshel, A. (2001) Energetics and dynamics of enzymatic reactions, J. Phys. Chem. B 105, 7887-7907.
-
(2001)
J. Phys. Chem. B
, vol.105
, pp. 7887-7907
-
-
Villa, J.1
Warshel, A.2
-
87
-
-
36849116826
-
The rule of the geometric mean
-
Bigeleisen, J. (1955) The rule of the geometric mean, J. Chem. Phys. 23, 2264-2267.
-
(1955)
J. Chem. Phys.
, vol.23
, pp. 2264-2267
-
-
Bigeleisen, J.1
-
88
-
-
0000809846
-
Reaction-coordinate tunneling in hydride transfer reactions
-
Huskey, W. P., and Schowen, R. L. (1983) Reaction-coordinate tunneling in hydride transfer reactions, J. Am. Chem. Soc. 105, 5704-5706.
-
(1983)
J. Am. Chem. Soc.
, vol.105
, pp. 5704-5706
-
-
Huskey, W.P.1
Schowen, R.L.2
-
89
-
-
84986958844
-
Origin of apparent Swain-Schaad deviations in criteria for tunneling
-
Huskey, W. P. (1991) Origin of apparent Swain-Schaad deviations in criteria for tunneling, J. Phys. Org. Chem. 4, 361-366.
-
(1991)
J. Phys. Org. Chem.
, vol.4
, pp. 361-366
-
-
Huskey, W.P.1
-
90
-
-
0000723940
-
Tunneling in elimination reactions: Structural effects on the secondary β-tritium isotope effect
-
Lin, S., and Saunders, W. H. (1994) Tunneling in elimination reactions: Structural effects on the secondary β-tritium isotope effect, J. Am. Chem. Soc. 116, 6107-6110.
-
(1994)
J. Am. Chem. Soc.
, vol.116
, pp. 6107-6110
-
-
Lin, S.1
Saunders, W.H.2
-
91
-
-
27144461162
-
Nonperfect synchronization of reaction center rehybridization in the transition state of the hydride transfer catalyzed by dihydrofolate reductase
-
Pu, J., Ma, S., Garcia-Viloca, M., Gao, J., Truhlar, D. J., and Kohen, A. (2005) Nonperfect synchronization of reaction center rehybridization in the transition state of the hydride transfer catalyzed by dihydrofolate reductase, J. Am. Chem. Soc. 127, 14879-14886.
-
(2005)
J. Am. Chem. Soc.
, vol.127
, pp. 14879-14886
-
-
Pu, J.1
Ma, S.2
Garcia-Viloca, M.3
Gao, J.4
Truhlar, D.J.5
Kohen, A.6
-
92
-
-
0024573393
-
Hydrogen tunneling in enzyme reactions
-
Cha, Y., Murray, C. J., and Klinman, J. P. (1989) Hydrogen tunneling in enzyme reactions, Science 243, 1325-1330.
-
(1989)
Science
, vol.243
, pp. 1325-1330
-
-
Cha, Y.1
Murray, C.J.2
Klinman, J.P.3
|