메뉴 건너뛰기




Volumn 5, Issue 4, 2002, Pages 630-647

NMR-based approaches for lead discovery

Author keywords

Chemical shift perturbations; Lead identification; Ligand screening; NMR screening; NMR screening libraries; NMR SOLVE; SAR by NMR; SHAPES; STD NMR; WaterLOGSY

Indexed keywords

LEAD;

EID: 0036653390     PISSN: 13676733     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Review
Times cited : (53)

References (100)
  • 1
    • 0034918529 scopus 로고    scopus 로고
    • NMR in the acceleration of drug discovery
    • Sem DS, Pellecchia M: NMR in the acceleration of drug discovery. Curr Opin Drug Discovery Dev (2001) 4:479-492. An overview of the role of NMR in the drug discovery and development process that argues that NMR is primed to revolutionize the high-throughput structural characterization of protein-ligand interactions.
    • (2001) Curr Opin Drug Discovery Dev , vol.4 , pp. 479-492
    • Sem, D.S.1    Pellecchia, M.2
  • 2
    • 0035524803 scopus 로고    scopus 로고
    • Nuclear magnetic resonance as a tool in drug discovery, metabolism and disposition
    • Pochapsky SS, Pochapsky TC: Nuclear magnetic resonance as a tool in drug discovery, metabolism and disposition. Curr Top Med Chem (2001) 1:427-441.
    • (2001) Curr Top Med Chem , vol.1 , pp. 427-441
    • Pochapsky, S.S.1    Pochapsky, T.C.2
  • 3
    • 0036490372 scopus 로고    scopus 로고
    • NMR in drug discovery
    • Pellecchia M, Sem DS, Wüthrich K: NMR in drug discovery. Nat Rev Drug Disc (2002) 1:211-219. Reviews the principles that enable NMR to characterize molecular interactions and discusses three NMR-based drug discovery strategies.
    • (2002) Nat Rev Drug Disc , vol.1 , pp. 211-219
    • Pellecchia, M.1    Sem, D.S.2    Wüthrich, K.3
  • 4
    • 0037088994 scopus 로고    scopus 로고
    • Structure-based screening and design in drug discovery
    • van Dongen M, Weigelt J, Uppenberg J, Schultz J, Wikström M: Structure-based screening and design in drug discovery. Drug Disc Today (2002) 7:471-478. Discusses the principles of a structure-based screening and design approach for lead discovery and shows its application to the discovery of a selective lead inhibitor of FABP-4 using site-selective NMR screening [38].
    • (2002) Drug Disc Today , vol.7 , pp. 471-478
    • Van Dongen, M.1    Weigelt, J.2    Uppenberg, J.3    Schultz, J.4    Wikström, M.5
  • 5
    • 0034923647 scopus 로고    scopus 로고
    • Nuclear magnetic resonance-based approaches for lead generation in drug discovery
    • Peng JW, Lepre CA, Fejzo J, Abdul-Manan N, Moore JM: Nuclear magnetic resonance-based approaches for lead generation in drug discovery. Methods Enzymol (2001) 338:202-230. Provides details on theoretical, experimental and practical aspects of NMR screening approaches, with particular focus on ligand-detected methods.
    • (2001) Methods Enzymol , vol.338 , pp. 202-230
    • Peng, J.W.1    Lepre, C.A.2    Fejzo, J.3    Abdul-Manan, N.4    Moore, J.M.5
  • 7
    • 0034212454 scopus 로고    scopus 로고
    • Applications of NMR in drug discovery
    • Roberts GCK: Applications of NMR in drug discovery. Drug Disc Today (2000) 5:230-240.
    • (2000) Drug Disc Today , vol.5 , pp. 230-240
    • Roberts, G.C.K.1
  • 8
    • 0033341062 scopus 로고    scopus 로고
    • NMR-based screening in drug discovery
    • Hajduk PJ, Meadows RP, Fesik SW: NMR-based screening in drug discovery. Q Rev Biophys (1999) 32:211-240. Discusses fragment-based NMR strategies for discovering high-affinity ligands for proteins, and reviews the early examples of SAR by NMR and variations thereof.
    • (1999) Q Rev Biophys , vol.32 , pp. 211-240
    • Hajduk, P.J.1    Meadows, R.P.2    Fesik, S.W.3
  • 9
    • 0036463681 scopus 로고    scopus 로고
    • Metabonomics: A platform for studying drug toxicity and gene function
    • Nicholson JK, Connelly J, Lindon JC, Holmes E: Metabonomics: A platform for studying drug toxicity and gene function. Nat Rev Drug Disc (2002) 1:153-161. Illustrates the role of NMR in metabonomics.
    • (2002) Nat Rev Drug Disc , vol.1 , pp. 153-161
    • Nicholson, J.K.1    Connelly, J.2    Lindon, J.C.3    Holmes, E.4
  • 10
    • 0032898594 scopus 로고    scopus 로고
    • In vivo magnetic resonance methods in pharmaceutical research: Current status and perspectives
    • Rudin M, Beckmann N, Porszasz R, Reese T, Bochelen D, Sauter A: In vivo magnetic resonance methods in pharmaceutical research: Current status and perspectives. NMR Biomed (1999) 12:69-97. Reviews in vivo NMR methods in clinical and preclinical studies.
    • (1999) NMR Biomed , vol.12 , pp. 69-97
    • Rudin, M.1    Beckmann, N.2    Porszasz, R.3    Reese, T.4    Bochelen, D.5    Sauter, A.6
  • 11
    • 0038253775 scopus 로고    scopus 로고
    • Weak binders aid discovery
    • Karet G: Weak binders aid discovery. Drug Disc Dev (2002) 5:32-38.
    • (2002) Drug Disc Dev , vol.5 , pp. 32-38
    • Karet, G.1
  • 12
    • 0030708525 scopus 로고    scopus 로고
    • Discovering high-affinity ligands for proteins
    • Hajduk PJ, Meadows RP, Fesik SW: Discovering high-affinity ligands for proteins. Science (1997) 278:497-499.
    • (1997) Science , vol.278 , pp. 497-499
    • Hajduk, P.J.1    Meadows, R.P.2    Fesik, S.W.3
  • 14
    • 0036558207 scopus 로고    scopus 로고
    • Structure-based screening of low-affinity compounds
    • Carr R, Jhoti H: Structure-based screening of low-affinity compounds. Drug Disc Today (2002) 7:522-527.
    • (2002) Drug Disc Today , vol.7 , pp. 522-527
    • Carr, R.1    Jhoti, H.2
  • 15
    • 0037039335 scopus 로고    scopus 로고
    • Mapping protein-protein interactions in solution by NMR spectroscopy
    • Zuiderweg ERP: Mapping protein-protein interactions in solution by NMR spectroscopy. Biochemistry (2002) 41:1-7.
    • (2002) Biochemistry , vol.41 , pp. 1-7
    • Zuiderweg, E.R.P.1
  • 17
    • 0034891022 scopus 로고    scopus 로고
    • Mapping the ligand binding site at protein side-chains in protein-ligand complexes through NOE difference spectroscopy
    • Eichmüller C, Tollinger M, Kräutler B, Konrat R: Mapping the ligand binding site at protein side-chains in protein-ligand complexes through NOE difference spectroscopy. J Biomol NMR (2001) 20:195-202.
    • (2001) J Biomol NMR , vol.20 , pp. 195-202
    • Eichmüller, C.1    Tollinger, M.2    Kräutler, B.3    Konrat, R.4
  • 18
    • 0033636878 scopus 로고    scopus 로고
    • Alignment of weakly interacting molecules to protein surfaces using simulations of chemical shift perturbations
    • McCoy MA, Wyss DF: Alignment of weakly interacting molecules to protein surfaces using simulations of chemical shift perturbations. J Biomol NMR (2000) 18:189-198. A method is described that enables the rapid determination of the binding site location and orientation of protein-bound aromatic ring-containing small molecules by minimizing the difference between experimental and simulated chemical shift perturbations. Such structural information is essential for the optimization of NMR screening hits into potent leads by focused chemistry approaches.
    • (2000) J Biomol NMR , vol.18 , pp. 189-198
    • McCoy, M.A.1    Wyss, D.F.2
  • 19
    • 0037009985 scopus 로고    scopus 로고
    • Spatial localization of ligand binding sites from electron current density surfaces calculated from NMR chemical shift perturbations
    • manuscript submitted
    • McCoy MA, Wyss DF: Spatial localization of ligand binding sites from electron current density surfaces calculated from NMR chemical shift perturbations. J Am Chem Soc (2002) manuscript submitted. Describes a rapid approach in which NMR chemical shift perturbations of the protein are used to construct an electron current density surface in coordinate space, which localizes the most probable position of the electron current density source from the small molecule ligand. This permits the spatial location of the ligand, bearing some resemblance to difference maps of electron density used in X-ray crystallography.
    • (2002) J Am Chem Soc
    • McCoy, M.A.1    Wyss, D.F.2
  • 20
    • 0034673316 scopus 로고    scopus 로고
    • The use of differential chemical shifts for determining the binding site location and orientation of protein-bound ligands
    • Medek A, Hajduk PJ, Mack J, Fesik SW: The use of differential chemical shifts for determining the binding site location and orientation of protein-bound ligands. J Am Chem Soc (2000) 122:1241-1242. Illustrates the utility of differential chemical shift perturbations of a series of closely related ligands to rapidly determine the precise location of the ligand binding site and the orientation of the ligand in the binding pocket, which provides critical structural information for lead development and optimization.
    • (2000) J Am Chem Soc , vol.122 , pp. 1241-1242
    • Medek, A.1    Hajduk, P.J.2    Mack, J.3    Fesik, S.W.4
  • 21
    • 0036175914 scopus 로고    scopus 로고
    • NMR-based structural characterization of large protein-ligand interactions
    • Pellecchia M, Meininger D, Dong Q, Chang E, Jack R, Sem DS: NMR-based structural characterization of large protein-ligand interactions. J Biomol NMR (2002) 22:165-173. Describes an NMR methodology that, with a suitable suite of NMR experiments and selective isotope-labeling schemes, rapidly obtains structural information of how a molecule binds to a protein, even in the absence of assignments or a complete 3D structure for the protein. The information is useful in the design of bi-ligand combinatorial libraries [78,106].
    • (2002) J Biomol NMR , vol.22 , pp. 165-173
    • Pellecchia, M.1    Meininger, D.2    Dong, Q.3    Chang, E.4    Jack, R.5    Sem, D.S.6
  • 22
    • 0034687240 scopus 로고    scopus 로고
    • Identification of novel inhibitors of urokinase via NMR-based screening
    • Hajduk PJ, Boyd S, Nettesheim D, Nienaber V, Severin J, Smith R, Davidson D, Rockway T, Fesik SW: Identification of novel inhibitors of urokinase via NMR-based screening. J Med Chem (2000) 43:3862-3866. Describes a cost-effective approach for the large-scale production of urokinase from mammalian cells, extending the applicability of target-detected NMR screening to proteins derived from mammalian systems. NMR screening, together with X-ray crystallography, identified 2-aminobenzimidazoles as a novel class of urokinase inhibitors, which serve as a starting point for the structure-based design of more potent leads.
    • (2000) J Med Chem , vol.43 , pp. 3862-3866
    • Hajduk, P.J.1    Boyd, S.2    Nettesheim, D.3    Nienaber, V.4    Severin, J.5    Smith, R.6    Davidson, D.7    Rockway, T.8    Fesik, S.W.9
  • 24
    • 0034055620 scopus 로고    scopus 로고
    • Automation of NMR measurements and data evaluation for systematically screening interactions of small molecules with target proteins
    • Ross A, Schlotterbeck G, Klaus W, Senn H: Automation of NMR measurements and data evaluation for systematically screening interactions of small molecules with target proteins. J Biomol NMR (2000) 16:139-146.
    • (2000) J Biomol NMR , vol.16 , pp. 139-146
    • Ross, A.1    Schlotterbeck, G.2    Klaus, W.3    Senn, H.4
  • 26
    • 0036214924 scopus 로고    scopus 로고
    • NMRKIN: Simulating line shapes from two-dimensional spectra of proteins upon ligand binding
    • Günther UL, Schaffhausen B: NMRKIN: Simulating line shapes from two-dimensional spectra of proteins upon ligand binding. J Biomol NMR (2002) 22:201-209.
    • (2002) J Biomol NMR , vol.22 , pp. 201-209
    • Günther, U.L.1    Schaffhausen, B.2
  • 27
    • 0030589110 scopus 로고    scopus 로고
    • Use of deuterium labeling in NMR: Overcoming a sizeable problem
    • Sattler M, Fesik SW: Use of deuterium labeling in NMR: Overcoming a sizeable problem. Structure (1996) 4:1245-1249.
    • (1996) Structure , vol.4 , pp. 1245-1249
    • Sattler, M.1    Fesik, S.W.2
  • 28
    • 0030735988 scopus 로고    scopus 로고
    • Solution NMR spectroscopy beyond 25 kDa
    • Kay LE, Gardner KH: Solution NMR spectroscopy beyond 25 kDa. Curr Opin Struct Biol (1997) 7:722-731.
    • (1997) Curr Opin Struct Biol , vol.7 , pp. 722-731
    • Kay, L.E.1    Gardner, K.H.2
  • 29
    • 0030612833 scopus 로고    scopus 로고
    • 2 relaxation by mutual cancellation of dipole-dipole coupling and chemical shift anisotropy indicates an avenue to NMR structures of very large biological macromolecules in solution
    • 2 relaxation by mutual cancellation of dipole-dipole coupling and chemical shift anisotropy indicates an avenue to NMR structures of very large biological macromolecules in solution. Proc Natl Acad Sci USA (1997) 94:12366-12371. An introduction to the TROSY method. TROSY enables the study of very high molecular weight proteins by NMR, because it produces a significant narrowing of NMR resonance line-widths and, thus, expands the scope of NMR-based lead/drug discovery approaches that rely on the detection of NMR signals from the target.
    • (1997) Proc Natl Acad Sci USA , vol.94 , pp. 12366-12371
    • Pervushin, K.1    Riek, R.2    Wider, G.3    Wüthrich, K.4
  • 30
    • 0034306122 scopus 로고    scopus 로고
    • TROSY and CRINEPT: NMR with large molecular and supramolecular structures in solution
    • Riek R, Pervushin K, Wüthrich K: TROSY and CRINEPT: NMR with large molecular and supramolecular structures in solution. Trends Biochem Sci (2000) 25:462-468.
    • (2000) Trends Biochem Sci , vol.25 , pp. 462-468
    • Riek, R.1    Pervushin, K.2    Wüthrich, K.3
  • 31
    • 0031856212 scopus 로고    scopus 로고
    • The second decade - Into the third millenium
    • Wüthrich K: The second decade - into the third millenium. Nat Struct Biol (1998) 5(Suppl):492-495.
    • (1998) Nat Struct Biol , vol.5 , Issue.SUPPL. , pp. 492-495
    • Wüthrich, K.1
  • 32
    • 0033794450 scopus 로고    scopus 로고
    • New developments in isotope labeling strategies for protein solution NMR spectroscopy
    • Goto NK, Kay LE: New developments in isotope labeling strategies for protein solution NMR spectroscopy. Curr Opin Struct Biol (2000) 10:585-592. Reviews novel isotope labeling strategies for proteins that have facilitated the study of structures of large proteins and protein dynamics. Such developments will also be essential for the application of target-detected NMR screening to larger proteins.
    • (2000) Curr Opin Struct Biol , vol.10 , pp. 585-592
    • Goto, N.K.1    Kay, L.E.2
  • 33
    • 0025193295 scopus 로고    scopus 로고
    • 13C for assignment and interpretation of nuclear magnetic resonance spectra of proteins
    • 13C for assignment and interpretation of nuclear magnetic resonance spectra of proteins. Q Rev Biophys (1996) 23:1-38.
    • (1996) Q Rev Biophys , vol.23 , pp. 1-38
    • McIntosh, L.P.1    Dahlquist, F.W.2
  • 34
    • 0030239071 scopus 로고    scopus 로고
    • 15N-amino acids
    • 15N-amino acids. J Biomol NMR (1996) 8:184-192.
    • (1996) J Biomol NMR , vol.8 , pp. 184-192
    • Waugh, D.S.1
  • 36
    • 0033038793 scopus 로고    scopus 로고
    • Improved segmental isotope labeling of proteins and application to a larger protein
    • Otomo T, Teruya K, Uegaki K, Yamazaki T, Kyogoku Y: Improved segmental isotope labeling of proteins and application to a larger protein. J Biomol NMR (1999) 14:105-114.
    • (1999) J Biomol NMR , vol.14 , pp. 105-114
    • Otomo, T.1    Teruya, K.2    Uegaki, K.3    Yamazaki, T.4    Kyogoku, Y.5
  • 37
    • 0033582287 scopus 로고    scopus 로고
    • Chemical ligation of folded recombinant proteins: Segmental isotopic labeling of domains for NMR studies
    • Xu R, Ayers B, Cowbum D, Muir TW: Chemical ligation of folded recombinant proteins: Segmental isotopic labeling of domains for NMR studies. Proc Natl Acad Sci USA (1999) 96:388-393.
    • (1999) Proc Natl Acad Sci USA , vol.96 , pp. 388-393
    • Xu, R.1    Ayers, B.2    Cowbum, D.3    Muir, T.W.4
  • 39
    • 0034809894 scopus 로고    scopus 로고
    • SEA-TROSY (solvent exposed amides with TROSY): A method to resolve the problem of spectral overlap in very large proteins
    • Pellecchia M, Meininger D, Shen AL, Jack R, Kasper CB, Sem DS: SEA-TROSY (solvent exposed amides with TROSY): A method to resolve the problem of spectral overlap in very large proteins. J Am Chem Soc (2001) 123:4633-4634.
    • (2001) J Am Chem Soc , vol.123 , pp. 4633-4634
    • Pellecchia, M.1    Meininger, D.2    Shen, A.L.3    Jack, R.4    Kasper, C.B.5    Sem, D.S.6
  • 40
    • 0001174635 scopus 로고    scopus 로고
    • Diffusion-edited NMR-affinity NMR for direct observation of molecular interactions
    • Lin M, Shapiro MJ, Wareing JR: Diffusion-edited NMR-affinity NMR for direct observation of molecular interactions. J Am Chem Soc (1997) 119:5249-5250.
    • (1997) J Am Chem Soc , vol.119 , pp. 5249-5250
    • Lin, M.1    Shapiro, M.J.2    Wareing, J.R.3
  • 41
    • 0031576702 scopus 로고    scopus 로고
    • One-dimensional relaxation- and diffusion-edited NMR methods for screening compounds that bind to macromolecules
    • Hajduk PJ, Olejniczak ET, Fesik SW: One-dimensional relaxation- and diffusion-edited NMR methods for screening compounds that bind to macromolecules. J Am Chem Soc (1997) 119:12257-12261.
    • (1997) J Am Chem Soc , vol.119 , pp. 12257-12261
    • Hajduk, P.J.1    Olejniczak, E.T.2    Fesik, S.W.3
  • 43
    • 0028728698 scopus 로고
    • Recent developments in transferred NOE methods
    • Ni F: Recent developments in transferred NOE methods. Prog NMR Spectros (1994) 26:517-606.
    • (1994) Prog NMR Spectros , vol.26 , pp. 517-606
    • Ni, F.1
  • 44
    • 0033213957 scopus 로고    scopus 로고
    • The SHAPES strategy: An NMR-based approach for lead generation in drug discovery
    • Fejzo J, Lepre CA, Peng JW, Bemis GW, Ajay, Murcko MA, Moore JM: The SHAPES strategy: An NMR-based approach for lead generation in drug discovery. Chem Biol (1999) 6:755-769. A lead discovery strategy based on the use of a library of low molecular weight fragments collected from the statistical analysis of established drugs. Protein targets are screened against weakly binding, drug-like molecular fragments by ligand-detected NMR methods, and hits are used to construct drug candidates computationally or in the laboratory.
    • (1999) Chem Biol , vol.6 , pp. 755-769
    • Fejzo, J.1    Lepre, C.A.2    Peng, J.W.3    Bemis, G.W.4    Ajay5    Murcko, M.A.6    Moore, J.M.7
  • 45
    • 0034212746 scopus 로고    scopus 로고
    • Mapping the active site of angiotensin-converting enzyme by transferred NOE spectroscopy
    • Mayer M, Meyer B: Mapping the active site of angiotensin-converting enzyme by transferred NOE spectroscopy. J Med Chem (2000) 43:2093-2099.
    • (2000) J Med Chem , vol.43 , pp. 2093-2099
    • Mayer, M.1    Meyer, B.2
  • 46
    • 0030917461 scopus 로고    scopus 로고
    • Screening mixtures for biological activity by NMR
    • Meyer B, Weimar T, Peters T: Screening mixtures for biological activity by NMR. Eur J Biochem (1997) 246:705-709.
    • (1997) Eur J Biochem , vol.246 , pp. 705-709
    • Meyer, B.1    Weimar, T.2    Peters, T.3
  • 47
    • 0033555207 scopus 로고    scopus 로고
    • Bioaffinity NMR spectroscopy: Identification of an E-selectin antagonist in a substance mixture by transfer NOE
    • Henrichsen D, Emst B, Magnani JL, Wang, W-T, Meyer B, Peters T: Bioaffinity NMR spectroscopy: Identification of an E-selectin antagonist in a substance mixture by transfer NOE. Angew Chem Int Ed (1999) 38:98-102.
    • (1999) Angew Chem Int Ed , vol.38 , pp. 98-102
    • Henrichsen, D.1    Emst, B.2    Magnani, J.L.3    Wang, W.-T.4    Meyer, B.5    Peters, T.6
  • 48
    • 0034725387 scopus 로고    scopus 로고
    • Application of NMR based binding assays to identify key hydroxy groups for intermolecular recognition
    • Vogtherr M, Peters T: Application of NMR based binding assays to identify key hydroxy groups for intermolecular recognition. J Am Chem Soc (2000) 122:6093-6099.
    • (2000) J Am Chem Soc , vol.122 , pp. 6093-6099
    • Vogtherr, M.1    Peters, T.2
  • 49
    • 0034674248 scopus 로고    scopus 로고
    • Application of 3D-TOCSY-tr-NOESY for the assignment of bioactive ligands from mixtures
    • Herfurth L, Weimar T, Peters T: Application of 3D-TOCSY-tr-NOESY for the assignment of bioactive ligands from mixtures. Angew Chem Int Ed (2000) 39:2097-2099.
    • (2000) Angew Chem Int Ed , vol.39 , pp. 2097-2099
    • Herfurth, L.1    Weimar, T.2    Peters, T.3
  • 50
    • 0032494393 scopus 로고    scopus 로고
    • NOE pumping: A novel NMR technique for identification of compounds with binding affinity to macromolecules
    • Chen A, Shapiro MJ: NOE pumping: A novel NMR technique for identification of compounds with binding affinity to macromolecules. J Am Chem Soc (1998) 120:10258-10259.
    • (1998) J Am Chem Soc , vol.120 , pp. 10258-10259
    • Chen, A.1    Shapiro, M.J.2
  • 51
    • 0033963395 scopus 로고    scopus 로고
    • NOE pumping. 2. A high-throughput method to determine compounds with binding affinity to macromolecules by NMR
    • Chen A, Shapiro MJ: NOE pumping. 2. A high-throughput method to determine compounds with binding affinity to macromolecules by NMR. J Am Chem Soc (2000) 122:414-415.
    • (2000) J Am Chem Soc , vol.122 , pp. 414-415
    • Chen, A.1    Shapiro, M.J.2
  • 52
    • 0033553844 scopus 로고    scopus 로고
    • Characterization of ligand binding by saturation transfer difference NMR spectroscopy
    • Mayer M, Meyer B: Characterization of ligand binding by saturation transfer difference NMR spectroscopy. Angew Chem Int Ed (1999) 38:1784-1788. Introduces STD NMR as a very sensitive ligand-detected NMR screening method.
    • (1999) Angew Chem Int Ed , vol.38 , pp. 1784-1788
    • Mayer, M.1    Meyer, B.2
  • 53
    • 0034823890 scopus 로고    scopus 로고
    • Group epitope mapping by saturation transfer difference NMR to identify segments of a ligand in direct contact with a protein receptor
    • Mayer M, Meyer B: Group epitope mapping by saturation transfer difference NMR to identify segments of a ligand in direct contact with a protein receptor. J Am Chem Soc (2001) 123:6108-6117. Describes a protocol for 'group epitope mapping' by STD NMR, which can be used to identify groups of a weakly binding ligand that are in direct contact with a target.
    • (2001) J Am Chem Soc , vol.123 , pp. 6108-6117
    • Mayer, M.1    Meyer, B.2
  • 54
    • 0033789206 scopus 로고    scopus 로고
    • Identification of compounds with binding affinity to proteins via magnetization transfer from bulk water
    • Dalvit C, Pevarello P, Tatò M, Veronesi M, Vulpetti A, Sundström M: Identification of compounds with binding affinity to proteins via magnetization transfer from bulk water. J Biomol NMR (2000) 18:65-68.
    • (2000) J Biomol NMR , vol.18 , pp. 65-68
    • Dalvit, C.1    Pevarello, P.2    Tatò, M.3    Veronesi, M.4    Vulpetti, A.5    Sundström, M.6
  • 55
    • 0035692794 scopus 로고    scopus 로고
    • WaterLOGSY as a method for primary NMR screening: Practical aspects and range of applicability
    • Dalvit C, Fogliatto G, Stewart A, Veronesi M, Stockman B: WaterLOGSY as a method for primary NMR screening: Practical aspects and range of applicability. J Biomol NMR (2001) 21:349-359. Discusses the practical aspects and range of applicability of this very sensitive and recently introduced ligand-detected NMR screening method, which relies on the direct transfer of polarization from protein-bound water to the protein-bound ligand.
    • (2001) J Biomol NMR , vol.21 , pp. 349-359
    • Dalvit, C.1    Fogliatto, G.2    Stewart, A.3    Veronesi, M.4    Stockman, B.5
  • 56
    • 0033538283 scopus 로고    scopus 로고
    • Detecting binding affinity to immobilized receptor proteins in compound libraries by HR-MAS STD NMR
    • Klein J, Meinecke R, Mayer M, Meyer B: Detecting binding affinity to immobilized receptor proteins in compound libraries by HR-MAS STD NMR. J Am Chem Soc (1999) 121:5336-5337.
    • (1999) J Am Chem Soc , vol.121 , pp. 5336-5337
    • Klein, J.1    Meinecke, R.2    Mayer, M.3    Meyer, B.4
  • 57
    • 0035855877 scopus 로고    scopus 로고
    • 3
    • 3. J Med Chem (2001) 44:3059-3065. Describes the application of STD NMR to characterize the binding specificity of RGD peptide ligands to the heterodimeric integrin αIIbβ3 when embedded into the lipid bilayer of a liposome.
    • (2001) J Med Chem , vol.44 , pp. 3059-3065
    • Meinecke, R.1    Meyer, B.2
  • 58
    • 0036290185 scopus 로고    scopus 로고
    • Complete relaxation and conformational exchange matrix (CORCEMA) analysis of intermolecular saturation transfer effects in reversibly forming ligand-receptor complexes
    • Jayalakshmi V, Krishna NR: Complete relaxation and conformational exchange matrix (CORCEMA) analysis of intermolecular saturation transfer effects in reversibly forming ligand-receptor complexes. J Magnetic Resonance (2002) 155:106-118.
    • (2002) J Magnetic Resonance , vol.155 , pp. 106-118
    • Jayalakshmi, V.1    Krishna, N.R.2
  • 59
    • 0034051065 scopus 로고    scopus 로고
    • A novel NMR method for determining the interfaces of large protein-protein complexes
    • Takahashi H, Nakanishi T, Kami K, Arata Y, Shimada I: A novel NMR method for determining the interfaces of large protein-protein complexes. Nat Struct Biol (2000) 7:220-223.
    • (2000) Nat Struct Biol , vol.7 , pp. 220-223
    • Takahashi, H.1    Nakanishi, T.2    Kami, K.3    Arata, Y.4    Shimada, I.5
  • 60
    • 0034703760 scopus 로고    scopus 로고
    • Mapping the interfaces of protein-nucleic acid complexes using cross-saturation
    • Ramos A, Kelly G, Hollingworth D, Pastore A, Frenkiel T: Mapping the interfaces of protein-nucleic acid complexes using cross-saturation. J Am Chem Soc (2000) 122:11311-11314.
    • (2000) J Am Chem Soc , vol.122 , pp. 11311-11314
    • Ramos, A.1    Kelly, G.2    Hollingworth, D.3    Pastore, A.4    Frenkiel, T.5
  • 61
  • 62
    • 0035744198 scopus 로고    scopus 로고
    • 19F relaxation measurements for the study of fluorinated ligand-receptor interactions
    • 19F relaxation measurements for the study of fluorinated ligand-receptor interactions. J Magnetic Resonance (2001) 153:32-47.
    • (2001) J Magnetic Resonance , vol.153 , pp. 32-47
    • Peng, J.W.1
  • 65
    • 0029836953 scopus 로고    scopus 로고
    • Discovering high-affinity ligands for proteins: SAR by NMR
    • Shuker SB, Hajduk PJ, Meadows RP, Fesik SW: Discovering high-affinity ligands for proteins: SAR by NMR. Science (1996) 274:1531-1534. Introduction of an NMR-based drug discovery strategy that develops high-affinity ligands by linking together fragments, identified and optimized independently by NMR, based on structural information of the ternary complex.
    • (1996) Science , vol.274 , pp. 1531-1534
    • Shuker, S.B.1    Hajduk, P.J.2    Meadows, R.P.3    Fesik, S.W.4
  • 69
    • 0033575666 scopus 로고    scopus 로고
    • NMR-based discovery of phosphotyrosine mimetics that bind to the Lck SH2 domain
    • Hajduk PJ, Zhou M-M, Fesik SW: NMR-based discovery of phosphotyrosine mimetics that bind to the Lck SH2 domain. Bioorg Med Chem Lett (1999) 9:2403-2406.
    • (1999) Bioorg Med Chem Lett , vol.9 , pp. 2403-2406
    • Hajduk, P.J.1    Zhou, M.-M.2    Fesik, S.W.3
  • 71
    • 0035848575 scopus 로고    scopus 로고
    • Novel p-arylthio cinnamides as antagonists of leukocyte function-associated antigen-1/intracellular adhesion molecule-1 interaction. 2. Mechanism of inhibition and structure-based improvement of pharmaceutical properties
    • Liu G, Huth JR, Olejniczak ET, Mendoza R, DeVries P, Leitza S, Reilly EB, Okasinski GF, Fesik SW, von Geldem TW: Novel p-arylthio cinnamides as antagonists of leukocyte function-associated antigen-1/intracellular adhesion molecule-1 interaction. 2. Mechanism of inhibition and structure-based improvement of pharmaceutical properties. J Med Chem (2001) 44:1202-1210. Demonstrates the power of the NMR-based fragment optimization approach for rapidly modifying high-affinity ligands to improve their pharmaceutical properties.
    • (2001) J Med Chem , vol.44 , pp. 1202-1210
    • Liu, G.1    Huth, J.R.2    Olejniczak, E.T.3    Mendoza, R.4    DeVries, P.5    Leitza, S.6    Reilly, E.B.7    Okasinski, G.F.8    Fesik, S.W.9    Von Geldem, T.W.10
  • 72
    • 0035370765 scopus 로고    scopus 로고
    • Automation of measurements and data evaluation in biomolecular NMR screening
    • Ross A, Senn H: Automation of measurements and data evaluation in biomolecular NMR screening. Drug Disc Today (2001) 6:583-593. Reviews automation of industrial-scale NMR-based screening, presenting a fully integrated hardware set-up for 'just-in-time' sample preparation and automated analysis of target-detected NMR screening data.
    • (2001) Drug Disc Today , vol.6 , pp. 583-593
    • Ross, A.1    Senn, H.2
  • 74
    • 0036523375 scopus 로고    scopus 로고
    • Spin labels as a tool to identify and characterize protein-ligand interactions by NMR spectroscopy
    • Jahnke W: Spin labels as a tool to identify and characterize protein-ligand interactions by NMR spectroscopy. ChemBioChem (2002) 3:167-173.
    • (2002) ChemBioChem , vol.3 , pp. 167-173
    • Jahnke, W.1
  • 75
    • 0029894013 scopus 로고    scopus 로고
    • The properties of known drugs. 1. Molecular frameworks
    • Bemis GW, Murcko MA: The properties of known drugs. 1. Molecular frameworks. J Med Chem (1996) 39:2887-2893.
    • (1996) J Med Chem , vol.39 , pp. 2887-2893
    • Bemis, G.W.1    Murcko, M.A.2
  • 76
    • 0033576605 scopus 로고    scopus 로고
    • Properties of known drugs. 2. Side chains
    • Bemis GW, Murcko MA: Properties of known drugs. 2. Side chains. J Med Chem (1999) 42:5095-5099.
    • (1999) J Med Chem , vol.42 , pp. 5095-5099
    • Bemis, G.W.1    Murcko, M.A.2
  • 78
    • 4243852307 scopus 로고    scopus 로고
    • Triad therapeutics: Integration of NMR structural determinations and smart chemistry to speed drug discovery
    • Jack RM, Smith JS, Villar HO, Sem DS, Coutts SM: Triad therapeutics: Integration of NMR structural determinations and smart chemistry to speed drug discovery. Drug Disc Today (2002) 7:S35-S38.
    • (2002) Drug Disc Today , vol.7
    • Jack, R.M.1    Smith, J.S.2    Villar, H.O.3    Sem, D.S.4    Coutts, S.M.5
  • 80
    • 0037138678 scopus 로고    scopus 로고
    • A novel approach for characterizing protein ligand complexes: Molecular basis for specificity of small-molecule Bcl-2 inhibitors
    • Lugovskoy AA, Degterev AI, Fahmy AF, Zhou P, Gross JD, Yuan J, Wagner G: A novel approach for characterizing protein ligand complexes: Molecular basis for specificity of small-molecule Bcl-2 inhibitors. J Am Chem Soc (2002) 124:1234-1240.
    • (2002) J Am Chem Soc , vol.124 , pp. 1234-1240
    • Lugovskoy, A.A.1    Degterev, A.I.2    Fahmy, A.F.3    Zhou, P.4    Gross, J.D.5    Yuan, J.6    Wagner, G.7
  • 81
    • 0037070536 scopus 로고    scopus 로고
    • Structures of protein - Protein complexes are docked using only NMR restraints from residual dipolar coupling and chemical shift perturbations
    • McCoy MA, Wyss DF: Structures of protein - protein complexes are docked using only NMR restraints from residual dipolar coupling and chemical shift perturbations. J Am Chem Soc (2002) 124:2104-2105.
    • (2002) J Am Chem Soc , vol.124 , pp. 2104-2105
    • McCoy, M.A.1    Wyss, D.F.2
  • 82
    • 0037138706 scopus 로고    scopus 로고
    • TreeDock: A tool for protein docking based on minimizing van der Waals energies
    • Fahmy A, Wagner G: TreeDock: A tool for protein docking based on minimizing van der Waals energies. J Am Chem Soc (2002) 124:1241-1250.
    • (2002) J Am Chem Soc , vol.124 , pp. 1241-1250
    • Fahmy, A.1    Wagner, G.2
  • 83
    • 0035253553 scopus 로고    scopus 로고
    • MS/NMR: A structure-based approach for discovering protein ligands and for drug design by coupling size exclusion chromatography, mass spectrometry, and nuclear magnetic resonance spectroscopy
    • Moy FJ, Haraki K, Mobilio D, Walker G, Powers R, Tabei K, Tong H, Siegel MM: MS/NMR: A structure-based approach for discovering protein ligands and for drug design by coupling size exclusion chromatography, mass spectrometry, and nuclear magnetic resonance spectroscopy. Anal Chem (2001) 73:571-581. Comprehensive description of a relatively universal high-throughput screening approach combining the inherent strengths of size exclusion gel chromatography, MS and NMR.
    • (2001) Anal Chem , vol.73 , pp. 571-581
    • Moy, F.J.1    Haraki, K.2    Mobilio, D.3    Walker, G.4    Powers, R.5    Tabei, K.6    Tong, H.7    Siegel, M.M.8
  • 84
    • 0034923365 scopus 로고    scopus 로고
    • Screening of compound libraries for protein binding using flow-injection nuclear magnetic resonance spectroscopy
    • Stockman BJ, Farley KA, Angwin DT: Screening of compound libraries for protein binding using flow-injection nuclear magnetic resonance spectroscopy. Methods Enzymol (2001) 338:230-246.
    • (2001) Methods Enzymol , vol.338 , pp. 230-246
    • Stockman, B.J.1    Farley, K.A.2    Angwin, D.T.3
  • 85
    • 0035252844 scopus 로고    scopus 로고
    • Library design for NMR-based screening
    • Lepre CA: Library design for NMR-based screening. Drug Disc Today (2001) 6:133-140. Reviews the current state-of-the-art methodologies for designing primary and follow-up libraries for NMR-based screening.
    • (2001) Drug Disc Today , vol.6 , pp. 133-140
    • Lepre, C.A.1
  • 86
    • 0035289779 scopus 로고    scopus 로고
    • Experimental and computational approaches to estimate solubility and permeability in drug discovery and development settings
    • Lipinski CA, Lombardo F, Dominy BW, Feeney PJ: Experimental and computational approaches to estimate solubility and permeability in drug discovery and development settings. Adv Drug Deliv Rev (2001) 46:3-26. Characterization of some current drugs in terms of properties, such as number of hydrogen bond donors and acceptors, hydrophobicity (ClogP) and molecular weight, to derive rules for defining compounds as 'drug-like'.
    • (2001) Adv Drug Deliv Rev , vol.46 , pp. 3-26
    • Lipinski, C.A.1    Lombardo, F.2    Dominy, B.W.3    Feeney, P.J.4
  • 87
    • 0037204546 scopus 로고    scopus 로고
    • Prediction of 'drug-likeness'
    • Walters WP, Murcko MA: Prediction of 'drug-likeness'. Adv Drug Deliv Rev (2002) 54:255-271. Reviews various computational techniques for identifying drug-like molecules, and provides some insights into challenges facing the field.
    • (2002) Adv Drug Deliv Rev , vol.54 , pp. 255-271
    • Walters, W.P.1    Murcko, M.A.2
  • 88
    • 0034646370 scopus 로고    scopus 로고
    • Combinatorial target-guided ligand assembly: Identification of potent subtype-selective c-Src inhibitors
    • Maly DJ, Choong IC, Ellman JA: Combinatorial target-guided ligand assembly: Identification of potent subtype-selective c-Src inhibitors. Proc Natl Acad Sci USA (2000) 97:2419-2424.
    • (2000) Proc Natl Acad Sci USA , vol.97 , pp. 2419-2424
    • Maly, D.J.1    Choong, I.C.2    Ellman, J.A.3
  • 89
    • 0035438391 scopus 로고    scopus 로고
    • Is there a difference between leads and drugs? A historical perspective
    • Oprea TI, Davis AM, Teague SJ, Leeson PD: Is there a difference between leads and drugs? A historical perspective. J Chem Inf Comput Sci (2001) 41:1308-1315. Describes interesting differences between the properties of leads and drugs, providing information for the design of libraries aimed at lead discovery.
    • (2001) J Chem Inf Comput Sci , vol.41 , pp. 1308-1315
    • Oprea, T.I.1    Davis, A.M.2    Teague, S.J.3    Leeson, P.D.4
  • 90
    • 0034618541 scopus 로고    scopus 로고
    • Privileged molecules for protein binding identified from NMR-based screening
    • Hajduk PJ, Bures M, Praestgaard J, Fesik SW: Privileged molecules for protein binding identified from NMR-based screening. J Med Chem (2000) 43:3443-3447.
    • (2000) J Med Chem , vol.43 , pp. 3443-3447
    • Hajduk, P.J.1    Bures, M.2    Praestgaard, J.3    Fesik, S.W.4
  • 91
    • 0033566211 scopus 로고    scopus 로고
    • Evaluation of PMF scoring in docking weak ligands to the FK506 binding protein
    • Muegge I, Martin YC, Hajduk PJ, Fesik SW: Evaluation of PMF scoring in docking weak ligands to the FK506 binding protein. J Med Chem (1999) 42:2498-2503.
    • (1999) J Med Chem , vol.42 , pp. 2498-2503
    • Muegge, I.1    Martin, Y.C.2    Hajduk, P.J.3    Fesik, S.W.4
  • 93
    • 0035793211 scopus 로고    scopus 로고
    • Solution structure and dynamics of the single-chain hepatitis C virus NS3 protease NS4A cofactor complex
    • McCoy MA, Senior MM, Gesell JJ, Ramanathan L, Wyss DF: Solution structure and dynamics of the single-chain hepatitis C virus NS3 protease NS4A cofactor complex. J Mol Biol (2001) 305:1099-1110.
    • (2001) J Mol Biol , vol.305 , pp. 1099-1110
    • McCoy, M.A.1    Senior, M.M.2    Gesell, J.J.3    Ramanathan, L.4    Wyss, D.F.5
  • 95
    • 0037578241 scopus 로고    scopus 로고
    • NMR probe head with cryogenically cooled preamplifiers. US-05814992 (1998)
    • SPECTROSPIN AG (Busse-Grawitz ME, Roeck W): NMR probe head with cryogenically cooled preamplifiers. US-05814992 (1998).
    • Busse-Grawitz, M.E.1    Roeck, W.2
  • 96
    • 0037916202 scopus 로고    scopus 로고
    • Transverse relaxation-optimized spectroscopy. US-06133736 (2000)
    • BRUKER AG (Pervushin K, Wider G, Riek R, Wüthrich K): Transverse relaxation-optimized spectroscopy. US-06133736 (2000).
    • Pervushin, K.1    Wider, G.2    Riek, R.3    Wüthrich, K.4
  • 97
    • 0038253767 scopus 로고    scopus 로고
    • Use of nuclear magnetic resonance to identify ligands to target biomolecules. US-05804390 (1998)
    • ABBOTT LABORATORIES (Fesik SW, Hajduk PJ): Use of nuclear magnetic resonance to identify ligands to target biomolecules. US-05804390 (1998).
    • Fesik, S.W.1    Hajduk, P.J.2
  • 98
    • 0037916204 scopus 로고    scopus 로고
    • Use of nuclear magnetic resonance to design ligands to target biomolecules. US-05989827 (1999)
    • ABBOTT LABORATORIES (Fesik SW, Hajduk PJ, Olejniczak ET): Use of nuclear magnetic resonance to design ligands to target biomolecules. US-05989827 (1999).
    • Fesik, S.W.1    Hajduk, P.J.2    Olejniczak, E.T.3
  • 99
    • 0038592351 scopus 로고    scopus 로고
    • NMR-SOLVE method for rapid identification of bi-ligand drug candidates. WO-00075364 (2000)
    • TRIAD THERAPEUTICS INC (Sem DS, Pellecchia M, Tempczyk-Russell A): NMR-SOLVE method for rapid identification of bi-ligand drug candidates. WO-00075364 (2000).
    • Sem, D.S.1    Pellecchia, M.2    Tempczyk-Russell, A.3
  • 100
    • 0037916203 scopus 로고    scopus 로고
    • Multi-partite ligands and methods of identifying and using same. WO-09960404 (1999)
    • TRIAD BIOTECHNOLOGY INC (Sem D): Multi-partite ligands and methods of identifying and using same. WO-09960404 (1999).
    • Sem, D.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.