-
1
-
-
0030801002
-
Gapped Blast and PSI-Blast, a new generation of protein database search programs
-
Altschul S.F., Madden T.L., Schaffer A.A., Zhang J., Zhang Z., Miller W., Lipman D.J. Gapped Blast and PSI-Blast, a new generation of protein database search programs. Nucl. Acids Res. 25:1997;3389-3402
-
(1997)
Nucl. Acids Res.
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schaffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
2
-
-
0030895921
-
A comparison of selected mRNA and protein abundances in human liver
-
Anderson L., Seilhamer J. A comparison of selected mRNA and protein abundances in human liver. Electrophoresis. 18:1997;533-537
-
(1997)
Electrophoresis
, vol.18
, pp. 533-537
-
-
Anderson, L.1
Seilhamer, J.2
-
3
-
-
0030707764
-
Bioinformatics: From genome data to biological knowledge
-
Andrade M.A., Sander C. Bioinformatics from genome data to biological knowledge. Curr. Opin. Biotechnol. 8:1997;675-683
-
(1997)
Curr. Opin. Biotechnol.
, vol.8
, pp. 675-683
-
-
Andrade, M.A.1
Sander, C.2
-
4
-
-
0030633417
-
Automatic annotation for biological sequences by extraction of keywords from MEDLINE abstracts
-
Andrade M., Valencia A. Automatic annotation for biological sequences by extraction of keywords from MEDLINE abstracts. Intelligent Systems Mol. Biol. 5:1997;25-32
-
(1997)
Intelligent Systems Mol. Biol
, vol.5
, pp. 25-32
-
-
Andrade, M.1
Valencia, A.2
-
5
-
-
0030760547
-
Sequence analysis of the Methanococcus jannaschii genome and the prediction of protein function
-
Andrade M., Casari G., de Daruvar A., Sander C., Schneider R., Tamames J., Valencia A., Ouzounis C. Sequence analysis of the Methanococcus jannaschii genome and the prediction of protein function. Comput. Appl. Biosci. 13:1997;481-483
-
(1997)
Comput. Appl. Biosci.
, vol.13
, pp. 481-483
-
-
Andrade, M.1
Casari, G.2
De Daruvar, A.3
Sander, C.4
Schneider, R.5
Tamames, J.6
Valencia, A.7
Ouzounis, C.8
-
6
-
-
53249113519
-
The essential role of mass spectroscopy in characterization of protein structure: Mapping post-translational modifications
-
Annan R.S., Carr S.A. The essential role of mass spectroscopy in characterization of protein structure mapping post-translational modifications. J. Protein Chem. 16:1997;391-402
-
(1997)
J. Protein Chem.
, vol.16
, pp. 391-402
-
-
Annan, R.S.1
Carr, S.A.2
-
7
-
-
0030837927
-
Are there dominant membrane protein families with a given number of helices?
-
Arkin I.T., Brunger A.T., Engelman D.M. Are there dominant membrane protein families with a given number of helices? Proteins: Funct. Genet. 28:1997;465-466
-
(1997)
Proteins: Funct. Genet.
, vol.28
, pp. 465-466
-
-
Arkin, I.T.1
Brunger, A.T.2
Engelman, D.M.3
-
8
-
-
0031813405
-
The PRINTS protein fingerprint database in its fifth year
-
Attwood T.K., Beck M.E., Flower D.R., Scordis P., Selley J.N. The PRINTS protein fingerprint database in its fifth year. Nucl. Acids Res. 26:1998;304-308
-
(1998)
Nucl. Acids Res.
, vol.26
, pp. 304-308
-
-
Attwood, T.K.1
Beck, M.E.2
Flower, D.R.3
Scordis, P.4
Selley, J.N.5
-
9
-
-
0025663103
-
Prediction of rho-independent Escherichia coli transcription terminators. a statistical analysis of their RNA stem-loop, structures
-
d'Aubenton-Carafa Y., Brody E., Thermes C. Prediction of rho-independent Escherichia coli transcription terminators. A statistical analysis of their RNA stem-loop, structures. J. Mol. Biol. 216:1990;835-858
-
(1990)
J. Mol. Biol.
, vol.216
, pp. 835-858
-
-
D'Aubenton-Carafa, Y.1
Brody, E.2
Thermes, C.3
-
10
-
-
0032544103
-
Self-identification of protein-coding regions in microbial genomes
-
Audic S., Claverie J.-M. Self-identification of protein-coding regions in microbial genomes. Proc. Natl Acad. Sci. USA. 95:1998;10026-10031
-
(1998)
Proc. Natl Acad. Sci. USA
, vol.95
, pp. 10026-10031
-
-
Audic, S.1
Claverie, J.-M.2
-
11
-
-
0031864543
-
The SWISS-PROT protein sequence databank and its supplement TrEMBL
-
Bairoch A., Apweiler R. The SWISS-PROT protein sequence databank and its supplement TrEMBL. Nucl. Acids Res. 26:1998;38-42
-
(1998)
Nucl. Acids Res.
, vol.26
, pp. 38-42
-
-
Bairoch, A.1
Apweiler, R.2
-
12
-
-
0030771126
-
The PROSITE database, its status and progress
-
Bairoch A., Bucher P., Hofmann K. The PROSITE database, its status and progress. Nucl. Acids Res. 25:1997;217-221
-
(1997)
Nucl. Acids Res.
, vol.25
, pp. 217-221
-
-
Bairoch, A.1
Bucher, P.2
Hofmann, K.3
-
13
-
-
0030821171
-
Dealing with database explosion: A cautionary note
-
Bhatia U., Robison K., Gilbert W. Dealing with database explosion a cautionary note. Science. 276:1997;1724-1725
-
(1997)
Science
, vol.276
, pp. 1724-1725
-
-
Bhatia, U.1
Robison, K.2
Gilbert, W.3
-
14
-
-
0031855365
-
Enzymatic reaction rate limits with constraints on equilibrium constants and experimental parameters
-
Bish D.R., Mavrovouniotis M.L. Enzymatic reaction rate limits with constraints on equilibrium constants and experimental parameters. Biosystems. 47:1998;37-60
-
(1998)
Biosystems
, vol.47
, pp. 37-60
-
-
Bish, D.R.1
Mavrovouniotis, M.L.2
-
15
-
-
15444350252
-
The complete genome sequence of Escherichia coli K-12
-
Blattner F.R., Plunkett G., Bloch C.A., Perna N.T., Burland V., Riley M., Collado-Vides J., Glasner J.D., Rode C.K., Mayhew G.F., Gregor J., Davis N.W., Kirkpatrick H.A., Goeden M.A., Rose D.J., et al. The complete genome sequence of Escherichia coli K-12. Science. 277:1997;1453-1462
-
(1997)
Science
, vol.277
, pp. 1453-1462
-
-
Blattner, F.R.1
Plunkett, G.2
Bloch, C.A.3
Perna, N.T.4
Burland, V.5
Riley, M.6
Collado-Vides, J.7
Glasner, J.D.8
Rode, C.K.9
Mayhew, G.F.10
Gregor, J.11
Davis, N.W.12
Kirkpatrick, H.A.13
Goeden, M.A.14
Rose, D.J.15
-
17
-
-
0030804853
-
Flux analysis of underdetermined metabolic networks: The quest for the missing constraints
-
Bonarius H.P.J., Schmid G., Tramper J. Flux analysis of underdetermined metabolic networks the quest for the missing constraints. Trends Biotechnol. 15:1997;308-314
-
(1997)
Trends Biotechnol.
, vol.15
, pp. 308-314
-
-
Bonarius, H.P.J.1
Schmid, G.2
Tramper, J.3
-
18
-
-
0030271920
-
Go hunting in sequence databases but watch out for the traps
-
Bork P., Bairoch A. Go hunting in sequence databases but watch out for the traps. Trends Genet. 12:1996;425-427
-
(1996)
Trends Genet.
, vol.12
, pp. 425-427
-
-
Bork, P.1
Bairoch, A.2
-
19
-
-
0029997801
-
Applying motif and profile searches
-
Bork P., Gibson T.J. Applying motif and profile searches. Methods Enzymol. 266:1996;162-184
-
(1996)
Methods Enzymol.
, vol.266
, pp. 162-184
-
-
Bork, P.1
Gibson, T.J.2
-
20
-
-
0031897589
-
Predicting function from protein sequence: Where are the bottlenecks?
-
Bork P., Koonin E.V. Predicting function from protein sequence Where are the bottlenecks? Nature Genet. 13:1998;313-318
-
(1998)
Nature Genet.
, vol.13
, pp. 313-318
-
-
Bork, P.1
Koonin, E.V.2
-
22
-
-
0027940025
-
New genes in old sequence: A strategy for finding genes in the bacterial genome
-
Borodovsky M., Koonin E.V., Rudd K.E. New genes in old sequence a strategy for finding genes in the bacterial genome. Trends Biochem. Sci. 19:1994;309-313
-
(1994)
Trends Biochem. Sci.
, vol.19
, pp. 309-313
-
-
Borodovsky, M.1
Koonin, E.V.2
Rudd, K.E.3
-
23
-
-
0028236874
-
Genome scanning methods
-
Brown P.O. Genome scanning methods. Curr. Opin. Genet. Dev. 4:1994;366-373
-
(1994)
Curr. Opin. Genet. Dev.
, vol.4
, pp. 366-373
-
-
Brown, P.O.1
-
24
-
-
16044367245
-
Complete genome sequence of the methanogenic archaeon, Methanococcus jannaschii
-
Bult C.J., White O., Olsen G.J., Zhou L., Fleischmann R.D., Sutton G.G., Blake J.A., FitzGerald L.M., Clayton R.A., Gocayne J.D., Kerlavage A.R., Dougherty B.A., Tomb J.F., Adams M.D., Reich C.I., et al. Complete genome sequence of the methanogenic archaeon, Methanococcus jannaschii. Science. 273:1996;1058-1073
-
(1996)
Science
, vol.273
, pp. 1058-1073
-
-
Bult, C.J.1
White, O.2
Olsen, G.J.3
Zhou, L.4
Fleischmann, R.D.5
Sutton, G.G.6
Blake, J.A.7
Fitzgerald, L.M.8
Clayton, R.A.9
Gocayne, J.D.10
Kerlavage, A.R.11
Dougherty, B.A.12
Tomb, J.F.13
Adams, M.D.14
Reich, C.I.15
-
25
-
-
0022613406
-
Terminators of transcription with RNA polymerase from Escherichia coli: What they look like and how to find them
-
Brendel V., Hamm G.H., Trifonov E.N. Terminators of transcription with RNA polymerase from Escherichia coli what they look like and how to find them. J. Biomol. Struct. Dynan. 3:1986;705-723
-
(1986)
J. Biomol. Struct. Dynan.
, vol.3
, pp. 705-723
-
-
Brendel, V.1
Hamm, G.H.2
Trifonov, E.N.3
-
26
-
-
0031453678
-
Understanding gene and allele function with two-hybrid methods
-
Brent R., Finley R.L. Jr. Understanding gene and allele function with two-hybrid methods. Annu. Rev. Genet. 31:1997;663-704
-
(1997)
Annu. Rev. Genet.
, vol.31
, pp. 663-704
-
-
Brent, R.1
Finley Jr., R.L.2
-
27
-
-
0030585734
-
Evaluation of gene structure prediction programs
-
Burset M., Guigo R. Evaluation of gene structure prediction programs. Genomics. 34:1996;353-367
-
(1996)
Genomics
, vol.34
, pp. 353-367
-
-
Burset, M.1
Guigo, R.2
-
28
-
-
0026032684
-
A computer method for finding common base paired helices in aligned sequences: Application to the analysis of random sequences
-
Chan L., Zuker M., Jacobson A.B. A computer method for finding common base paired helices in aligned sequences application to the analysis of random sequences. Nucl. Acids Res. 19:1990;353-358
-
(1990)
Nucl. Acids Res.
, vol.19
, pp. 353-358
-
-
Chan, L.1
Zuker, M.2
Jacobson, A.B.3
-
30
-
-
0032559372
-
CTG repeats associated with human genetic disease are inherently flexible
-
Chastian P.D., Sinden R.R. CTG repeats associated with human genetic disease are inherently flexible. J. Mol. Biol. 275:1998;405-411
-
(1998)
J. Mol. Biol.
, vol.275
, pp. 405-411
-
-
Chastian, P.D.1
Sinden, R.R.2
-
31
-
-
10244219858
-
Accessing genetic information with high-density DNA arrays
-
Chee M., Yang R., Hubbell E., Berno A., Huang X.C., Stern D., Winkler J., Lockhart D.J., Morris M.S., Fodor S.P. Accessing genetic information with high-density DNA arrays. Science. 274:1996;610-614
-
(1996)
Science
, vol.274
, pp. 610-614
-
-
Chee, M.1
Yang, R.2
Hubbell, E.3
Berno, A.4
Huang, X.C.5
Stern, D.6
Winkler, J.7
Lockhart, D.J.8
Morris, M.S.9
Fodor, S.P.10
-
32
-
-
0029876415
-
Genetic selection of peptide aptamers that recognize and inhibit cyclin-dependent kinase 2
-
Colas P., Cohen B., Jessen T., Grishina I., McCoy J., Brent R. Genetic selection of peptide aptamers that recognize and inhibit cyclin-dependent kinase 2. Nature. 380:1997;548-550
-
(1997)
Nature
, vol.380
, pp. 548-550
-
-
Colas, P.1
Cohen, B.2
Jessen, T.3
Grishina, I.4
McCoy, J.5
Brent, R.6
-
34
-
-
7344233689
-
Systematic genomic screening and analysis of mRNA in untranslated regions and mRNA precursors: Combining experiment and computational approaches
-
Dandekar T., Beyer K., Bork P., Kenealy M.-R., Pantopoulos K., Hentze M.W., Sonntag-Buck V., Flouriot G., Gannon F., Keller W., Schreiber S. Systematic genomic screening and analysis of mRNA in untranslated regions and mRNA precursors combining experiment and computational approaches. Bioinformatics. 14:1998;271-278
-
(1998)
Bioinformatics
, vol.14
, pp. 271-278
-
-
Dandekar, T.1
Beyer, K.2
Bork, P.3
Kenealy, M.-R.4
Pantopoulos, K.5
Hentze, M.W.6
Sonntag-Buck, V.7
Flouriot, G.8
Gannon, F.9
Keller, W.10
Schreiber, S.11
-
35
-
-
0032169271
-
Conservation of gene order: A fingerprint of physically interacting proteins
-
Dandekar T., Snel B., Huynen M.A., Bork P. Conservation of gene order a fingerprint of physically interacting proteins. Trends Biochnol. Sci. 23:1998;324-328
-
(1998)
Trends Biochnol. Sci.
, vol.23
, pp. 324-328
-
-
Dandekar, T.1
Snel, B.2
Huynen, M.A.3
Bork, P.4
-
36
-
-
0026723290
-
The enzymology of archaebacterial pathways of central metabolism
-
Danson M.J., Hough D.W. The enzymology of archaebacterial pathways of central metabolism. Biochem. Soc. Symp. 58:1992;7-21
-
(1992)
Biochem. Soc. Symp.
, vol.58
, pp. 7-21
-
-
Danson, M.J.1
Hough, D.W.2
-
37
-
-
0025853156
-
Neural network optimization for E. coli promoter prediction
-
Demeler B., Zhou G. Neural network optimization for E. coli promoter prediction. Nucl. Acids Res. 19:1991;1593-1599
-
(1991)
Nucl. Acids Res.
, vol.19
, pp. 1593-1599
-
-
Demeler, B.1
Zhou, G.2
-
38
-
-
0030669030
-
Exploring the metabolic and genetic control of gene expression on a genomic scale
-
DeRisi J.L., Vishwanath R.I., Brown P.O. Exploring the metabolic and genetic control of gene expression on a genomic scale. Science. 278:1997;680-686
-
(1997)
Science
, vol.278
, pp. 680-686
-
-
Derisi, J.L.1
Vishwanath, R.I.2
Brown, P.O.3
-
39
-
-
0032085105
-
Protein annotation: Detective work for function prediction
-
Doerks T., Bairoch A., Bork P. Protein annotation detective work for function prediction. Trends Genet. 14:1998;248-250
-
(1998)
Trends Genet.
, vol.14
, pp. 248-250
-
-
Doerks, T.1
Bairoch, A.2
Bork, P.3
-
40
-
-
0030884713
-
Emerging tandem-mass-sepctroscopy techniques for the rapid identification of proteins
-
Dongre A.R., Eng J.K., Yates J.R. Emerging tandem-mass-sepctroscopy techniques for the rapid identification of proteins. Trends Biotechnol. 15:1997;418-425
-
(1997)
Trends Biotechnol.
, vol.15
, pp. 418-425
-
-
Dongre, A.R.1
Eng, J.K.2
Yates, J.R.3
-
41
-
-
0031887946
-
Wanted: Subcellular localization of proteins based on sequence
-
Eisenhaber F., Bork P. Wanted subcellular localization of proteins based on sequence. Trends Cell Biol. 8:1998;169-170
-
(1998)
Trends Cell Biol.
, vol.8
, pp. 169-170
-
-
Eisenhaber, F.1
Bork, P.2
-
42
-
-
0028815464
-
Protein structure prediction: Recognition of primary, secondary, and tertiary structural features from amino acid sequence
-
Eisenhaber F., Persson B., Argos P. Protein structure prediction recognition of primary, secondary, and tertiary structural features from amino acid sequence. CRC Crit. Rev. Biochem. Mol. Biol. 30:1995;1-94
-
(1995)
CRC Crit. Rev. Biochem. Mol. Biol.
, vol.30
, pp. 1-94
-
-
Eisenhaber, F.1
Persson, B.2
Argos, P.3
-
43
-
-
0030272433
-
Influence of core protein sequence on glycosamino-glycan assembly
-
Esko J.D., Zhang I. Influence of core protein sequence on glycosamino-glycan assembly. Curr. Opin. Struc. Biol. 6:1996;663-670
-
(1996)
Curr. Opin. Struc. Biol.
, vol.6
, pp. 663-670
-
-
Esko, J.D.1
Zhang, I.2
-
44
-
-
0029967362
-
SRS: Information retrieval system for molecular biology data banks
-
Etzold T., Ulyanov A., Argos P. SRS information retrieval system for molecular biology data banks. Methods Enzymol. 266:1996;114-128
-
(1996)
Methods Enzymol.
, vol.266
, pp. 114-128
-
-
Etzold, T.1
Ulyanov, A.2
Argos, P.3
-
45
-
-
0031955518
-
Base-calling of automated sequncer traces using phred. I. Accuracy assesment
-
Ewing B., Hiller L., Wendl M.C., Green P. Base-calling of automated sequncer traces using phred. I. Accuracy assesment. Genome Res. 8:1998;175-185
-
(1998)
Genome Res.
, vol.8
, pp. 175-185
-
-
Ewing, B.1
Hiller, L.2
Wendl, M.C.3
Green, P.4
-
46
-
-
0029785161
-
Genetically probing the regions of ribose-binding protein involved in permease interaction
-
Eym Y., Park Y., Park C. Genetically probing the regions of ribose-binding protein involved in permease interaction. Mol. Microbiol. 21:1996;695-702
-
(1996)
Mol. Microbiol.
, vol.21
, pp. 695-702
-
-
Eym, Y.1
Park, Y.2
Park, C.3
-
47
-
-
0024257475
-
Fermentative adaptations to the lack of oxygen
-
Fields J.H.A. Fermentative adaptations to the lack of oxygen. Can. J. Zool. 66:1987;1036-1040
-
(1987)
Can. J. Zool.
, vol.66
, pp. 1036-1040
-
-
Fields, J.H.A.1
-
48
-
-
0030724017
-
Assigning folds to the proteins encoded by the genome of Mycoplasma genitalium
-
Fischer D., Eisenberg D. Assigning folds to the proteins encoded by the genome of Mycoplasma genitalium. Proc. Natl Acad. Sci. USA. 94:1997;11929-11934
-
(1997)
Proc. Natl Acad. Sci. USA
, vol.94
, pp. 11929-11934
-
-
Fischer, D.1
Eisenberg, D.2
-
49
-
-
0014800108
-
Distinguishing homologous from analogous proteins
-
Fitch W. Distinguishing homologous from analogous proteins. Syst. Zool. 19:1970;99-113
-
(1970)
Syst. Zool.
, vol.19
, pp. 99-113
-
-
Fitch, W.1
-
50
-
-
0029653518
-
Whole-genome random sequencing and assembly of Haemophilus influenzae Rd
-
Fleischmann R.D., Adams M.D., White O., Clayton R.A., Kirkness E.F., Kerlavage A.R., Bult C.J., Tomb J.F., Dougherty B.A., Merrick J.M., McKenney K., Sutton G., FitzHugh W., Fields C., Gocayne J.D., et al. Whole-genome random sequencing and assembly of Haemophilus influenzae Rd. Nature. 269:1995;496-512
-
(1995)
Nature
, vol.269
, pp. 496-512
-
-
Fleischmann, R.D.1
Adams, M.D.2
White, O.3
Clayton, R.A.4
Kirkness, E.F.5
Kerlavage, A.R.6
Bult, C.J.7
Tomb, J.F.8
Dougherty, B.A.9
Merrick, J.M.10
McKenney, K.11
Sutton, G.12
Fitzhugh, W.13
Fields, C.14
Gocayne, J.D.15
-
51
-
-
0028829125
-
The minimal gene complement of Mycoplasma genitalium
-
Fraser C.M., Gocayne J.D., White O., Adams M.D., Clayton R.A., Fleischmann R.D., Bult C.J., Kerlavage A.R., Sutton G., Kelley J.M., Fritchman J.L., Weidman J.F., Small K.V., Sandusky M., Fuhrmann J., et al. The minimal gene complement of Mycoplasma genitalium. Science. 270:1995;397-403
-
(1995)
Science
, vol.270
, pp. 397-403
-
-
Fraser, C.M.1
Gocayne, J.D.2
White, O.3
Adams, M.D.4
Clayton, R.A.5
Fleischmann, R.D.6
Bult, C.J.7
Kerlavage, A.R.8
Sutton, G.9
Kelley, J.M.10
Fritchman, J.L.11
Weidman, J.F.12
Small, K.V.13
Sandusky, M.14
Fuhrmann, J.15
-
52
-
-
0031470826
-
Genomic sequence of a Lyme disease spirochaete, Borrelia burgdorferi
-
Fraser C.M., Casjens S., Huang W.M., Sutton G.G., Clayton R., Lathigra R., White O., Ketchum K.A., Dodson R., Hickey E.K., Gwinn M., Dougherty B., Tomb J.F., Fleischmann R.D., Richardson D., et al. Genomic sequence of a Lyme disease spirochaete, Borrelia burgdorferi. Nature. 390:1998;580-586
-
(1998)
Nature
, vol.390
, pp. 580-586
-
-
Fraser, C.M.1
Casjens, S.2
Huang, W.M.3
Sutton, G.G.4
Clayton, R.5
Lathigra, R.6
White, O.7
Ketchum, K.A.8
Dodson, R.9
Hickey, E.K.10
Gwinn, M.11
Dougherty, B.12
Tomb, J.F.13
Fleischmann, R.D.14
Richardson, D.15
-
54
-
-
0030764671
-
Protein structural classes in five complete genomes
-
Frishman D., Mewes H.-W. Protein structural classes in five complete genomes. Nature Struct. Biol. 4:1997;626-628
-
(1997)
Nature Struct. Biol.
, vol.4
, pp. 626-628
-
-
Frishman, D.1
Mewes, H.-W.2
-
55
-
-
0029828166
-
Fully automated genome analysis that reflects user needs and preferences. a detailed introduction to the MAGPIE system architecture
-
Gaasterland T., Sensen C.W. Fully automated genome analysis that reflects user needs and preferences. A detailed introduction to the MAGPIE system architecture. Biochimie. 78:1996;302-310
-
(1996)
Biochimie
, vol.78
, pp. 302-310
-
-
Gaasterland, T.1
Sensen, C.W.2
-
56
-
-
0030707763
-
Will genetics really revolutionize the drug discovery process?
-
Gelbert L.M., Gregg R.E. Will genetics really revolutionize the drug discovery process? Curr. Opin. Biotechnol. 8:1997;669-674
-
(1997)
Curr. Opin. Biotechnol.
, vol.8
, pp. 669-674
-
-
Gelbert, L.M.1
Gregg, R.E.2
-
58
-
-
10244239321
-
Life with 6000 genes
-
Goffeau A., Barrell B.G., Bussey H., Davis R.W., Dujon B., Feldmann H., Galibert F., Hoheisel J.D., Jacq C., Johnston M., Louis E.J., Mewes H.W., Murakami Y., Philippsen P., Tettelin H., Oliver S.G. Life with 6000 genes. Science. 274:1996;546-567
-
(1996)
Science
, vol.274
, pp. 546-567
-
-
Goffeau, A.1
Barrell, B.G.2
Bussey, H.3
Davis, R.W.4
Dujon, B.5
Feldmann, H.6
Galibert, F.7
Hoheisel, J.D.8
Jacq, C.9
Johnston, M.10
Louis, E.J.11
Mewes, H.W.12
Murakami, Y.13
Philippsen, P.14
Tettelin, H.15
Oliver, S.G.16
-
59
-
-
0031298797
-
Computational gene identification: An open problem
-
Guigo R. Computational gene identification an open problem. Comput. Chem. 21:1997;215-222
-
(1997)
Comput. Chem.
, vol.21
, pp. 215-222
-
-
Guigo, R.1
-
60
-
-
0027676954
-
Inferring correlation between database queries: Analysis of protein sequence patterns
-
Guigo R., Smith T.F. Inferring correlation between database queries analysis of protein sequence patterns. IEEE Trans. Patt. Analysis Mach. Intell. 15:1993;1030-1041
-
(1993)
IEEE Trans. Patt. Analysis Mach. Intell.
, vol.15
, pp. 1030-1041
-
-
Guigo, R.1
Smith, T.F.2
-
61
-
-
0025738677
-
Automatic evaluation of protein sequence functional patterns
-
Guigo R., Johansson A., Smith T.F. Automatic evaluation of protein sequence functional patterns. Comp. Appl. Biosci. 7:1991;309-315
-
(1991)
Comp. Appl. Biosci.
, vol.7
, pp. 309-315
-
-
Guigo, R.1
Johansson, A.2
Smith, T.F.3
-
62
-
-
0027221959
-
Prediction of common folding structures of homologous RNAs
-
Han K., Kim H.-J. Prediction of common folding structures of homologous RNAs. Nucl. Acids Res. 21:1993;1251-1257
-
(1993)
Nucl. Acids Res.
, vol.21
, pp. 1251-1257
-
-
Han, K.1
Kim, H.-J.2
-
63
-
-
0031839544
-
Superior performance in protein homology detection with the Blocks Database servers
-
Henikoff S., Pietrokovski S., Henikoff J.G. Superior performance in protein homology detection with the Blocks Database servers. Nucl. Acids Res. 26:1998;309-312
-
(1998)
Nucl. Acids Res.
, vol.26
, pp. 309-312
-
-
Henikoff, S.1
Pietrokovski, S.2
Henikoff, J.G.3
-
64
-
-
0025372992
-
Identification of consensus patterns in unaligned DNA sequences known to be functionally related
-
Hertz G.Z., Hartzell G.W., Stormo G.D. Identification of consensus patterns in unaligned DNA sequences known to be functionally related. Comp. Appl. Biosci. 6:1990;81-92
-
(1990)
Comp. Appl. Biosci.
, vol.6
, pp. 81-92
-
-
Hertz, G.Z.1
Hartzell, G.W.2
Stormo, G.D.3
-
65
-
-
0030725715
-
Modern modifications
-
Hieter P., Boguski M. Modern modifications. Science. 278:1997;601-602
-
(1997)
Science
, vol.278
, pp. 601-602
-
-
Hieter, P.1
Boguski, M.2
-
66
-
-
10544255079
-
Complete sequence analysis of the genome of the bacterium Mycoplasma pneumoniae
-
Himmelreich R., Hilbert H., Plagens H., Pirkl E., Li B.-C., Herrmann R. Complete sequence analysis of the genome of the bacterium Mycoplasma pneumoniae. Nucl. Acids Res. 24:1996;4420-4449
-
(1996)
Nucl. Acids Res.
, vol.24
, pp. 4420-4449
-
-
Himmelreich, R.1
Hilbert, H.2
Plagens, H.3
Pirkl, E.4
Li, B.-C.5
Herrmann, R.6
-
67
-
-
0030811859
-
Comparative analysis of the genomes of the bacteria Mycoplasma pneumoniae and Mycoplasma genitalium
-
Himmelreich R., Plagens H., Hilbert H., Reiner B., Herrmann R. Comparative analysis of the genomes of the bacteria Mycoplasma pneumoniae and Mycoplasma genitalium. Nucl. Acids Res. 25:1997;701-712
-
(1997)
Nucl. Acids Res.
, vol.25
, pp. 701-712
-
-
Himmelreich, R.1
Plagens, H.2
Hilbert, H.3
Reiner, B.4
Herrmann, R.5
-
68
-
-
0029746160
-
DNA repeats identify novel virulence genes in Haemophilus influenzae
-
Hood D.W., Deadman M.E., Jennings M.P., Bisercic M., Fleischmann R.D., Venter J.C., Moxon E. DNA repeats identify novel virulence genes in Haemophilus influenzae. Proc. Natl Acad. Sci. USA. 93:1996;11121-11125
-
(1996)
Proc. Natl Acad. Sci. USA
, vol.93
, pp. 11121-11125
-
-
Hood, D.W.1
Deadman, M.E.2
Jennings, M.P.3
Bisercic, M.4
Fleischmann, R.D.5
Venter, J.C.6
Moxon, E.7
-
69
-
-
0030835931
-
Proteome analysis: Genomics via the output rather than the input code
-
Humphery-Smith I., Blackstock W. Proteome analysis genomics via the output rather than the input code. J. Protein Chem. 16:1997;537-544
-
(1997)
J. Protein Chem.
, vol.16
, pp. 537-544
-
-
Humphery-Smith, I.1
Blackstock, W.2
-
73
-
-
0032502899
-
Genomics: Differential genome analysis applied to the species specific features of Helicobacter pylori
-
Huynen M.A., Dandekar T., Bork P. Genomics differential genome analysis applied to the species specific features of Helicobacter pylori. FEBS Letters. 426:1998;1-5
-
(1998)
FEBS Letters
, vol.426
, pp. 1-5
-
-
Huynen, M.A.1
Dandekar, T.2
Bork, P.3
-
74
-
-
0032540845
-
Homology-based fold predictions for Mycoplasma genitalium proteins
-
Huynen M.A., Doerks T., Eisenhaber F., Orengo C., Sunyaev A., Yuan Y., Bork P. Homology-based fold predictions for Mycoplasma genitalium proteins. J. Mol. Biol. 280:1998;323-326
-
(1998)
J. Mol. Biol.
, vol.280
, pp. 323-326
-
-
Huynen, M.A.1
Doerks, T.2
Eisenhaber, F.3
Orengo, C.4
Sunyaev, A.5
Yuan, Y.6
Bork, P.7
-
75
-
-
0031299694
-
Development of a cell signaling networks database
-
Igarashi T., Kaminuma T. Development of a cell signaling networks database. Pac. Symp. Biocomp. 1997;187-197
-
(1997)
Pac. Symp. Biocomp.
, pp. 187-197
-
-
Igarashi, T.1
Kaminuma, T.2
-
76
-
-
0030754905
-
GIF-DB, a WWW database on gene interactions involved in Drosophila melanogaster development
-
Jacq B., Horn F., Janody F., Gompel N., Serralbo O., Mohr E., Leroy C., Bellon B., Fasano L., Laurenti P., Röder L. GIF-DB, a WWW database on gene interactions involved in Drosophila melanogaster development. Nucl. Acids Res. 25:1997;67-71
-
(1997)
Nucl. Acids Res.
, vol.25
, pp. 67-71
-
-
Jacq, B.1
Horn, F.2
Janody, F.3
Gompel, N.4
Serralbo, O.5
Mohr, E.6
Leroy, C.7
Bellon, B.8
Fasano, L.9
Laurenti, P.10
Röder, L.11
-
78
-
-
0030094146
-
CENSOR: A program for identification and elimination of repetitive elements from DNA sequences
-
Jurka J., Klonowski P., Dagman V., Pelton P. CENSOR a program for identification and elimination of repetitive elements from DNA sequences. Comput. Chem. 20:1996;119-121
-
(1996)
Comput. Chem.
, vol.20
, pp. 119-121
-
-
Jurka, J.1
Klonowski, P.2
Dagman, V.3
Pelton, P.4
-
79
-
-
0028788811
-
From genome to proteome: Looking at a cell's proteins
-
Kahn P. From genome to proteome looking at a cell's proteins. Science. 270:1995;369-370
-
(1995)
Science
, vol.270
, pp. 369-370
-
-
Kahn, P.1
-
80
-
-
0030606607
-
Sequence analysis of the genome of the unicellular cyanobacterium Synechocystis sp. strain PCC6803. II. Sequence determination of the entire genome and assignment of potential protein-coding regions
-
Kaneko T., Sato S., Kotani H., Tanaka A., Asamizu E., Nakamura Y., Miyajima N., Hirosawa M., Sugiura M., Sasamoto S., Kimura T., Hosouchi T., Matsuno A., Muraki A., Nakazaki N., et al. Sequence analysis of the genome of the unicellular cyanobacterium Synechocystis sp. strain PCC6803. II. Sequence determination of the entire genome and assignment of potential protein-coding regions. DNA Res. 3:1996;109-136
-
(1996)
DNA Res.
, vol.3
, pp. 109-136
-
-
Kaneko, T.1
Sato, S.2
Kotani, H.3
Tanaka, A.4
Asamizu, E.5
Nakamura, Y.6
Miyajima, N.7
Hirosawa, M.8
Sugiura, M.9
Sasamoto, S.10
Kimura, T.11
Hosouchi, T.12
Matsuno, A.13
Muraki, A.14
Nakazaki, N.15
-
81
-
-
0031804621
-
EcoCyc: Encyclopedia of Escherichia coli genes and metabolism
-
Karp P.D., Riley M., Paley S.M., Pellegrini-Toole A., Krummenacker M. EcoCyc Encyclopedia of Escherichia coli genes and metabolism. Nucl. Acids Res. 26:1998;50-53
-
(1998)
Nucl. Acids Res.
, vol.26
, pp. 50-53
-
-
Karp, P.D.1
Riley, M.2
Paley, S.M.3
Pellegrini-Toole, A.4
Krummenacker, M.5
-
82
-
-
0031458333
-
The complete genome sequence of the hyperthermophilic, sulphate-reducing archaeon Archaeoglobus fulgidus
-
Klenk H.P., Clayton R.A., Tomb J-F., White O., Nelson K.E., Ketchum K.E., Dodson R.J., Gwinn M., Hickey E.K., Peterson J.D., Richardson D.L., Kerlavage A.R., Graham D.E., Kyrpides N.C., Fleischmann R.D., et al. The complete genome sequence of the hyperthermophilic, sulphate-reducing archaeon Archaeoglobus fulgidus. Nature. 390:1997;364-370
-
(1997)
Nature
, vol.390
, pp. 364-370
-
-
Klenk, H.P.1
Clayton, R.A.2
Tomb, J.-F.3
White, O.4
Nelson, K.E.5
Ketchum, K.E.6
Dodson, R.J.7
Gwinn, M.8
Hickey, E.K.9
Peterson, J.D.10
Richardson, D.L.11
Kerlavage, A.R.12
Graham, D.E.13
Kyrpides, N.C.14
Fleischmann, R.D.15
-
83
-
-
0031459310
-
Prokaryotic genomes: The emerging paradigm of genome-based microbiology
-
Koonin E.V., Galperin M.Y. Prokaryotic genomes the emerging paradigm of genome-based microbiology. Curr. Opin. Genet. Dev. 7:1997;757-763
-
(1997)
Curr. Opin. Genet. Dev.
, vol.7
, pp. 757-763
-
-
Koonin, E.V.1
Galperin, M.Y.2
-
85
-
-
0030868589
-
Comparison of archaeal and bacterial genomes: Computer analysis of proteins sequences predicts novel functions and suggests a chimeric origin for the archaea
-
Koonin E.V., Mushegian A.R., Galperin M.Y., Walker D.R. Comparison of archaeal and bacterial genomes computer analysis of proteins sequences predicts novel functions and suggests a chimeric origin for the archaea. Mol. Microbiol. 25:1997;619-637
-
(1997)
Mol. Microbiol.
, vol.25
, pp. 619-637
-
-
Koonin, E.V.1
Mushegian, A.R.2
Galperin, M.Y.3
Walker, D.R.4
-
86
-
-
0001900596
-
Identifcation of common post-translational modifications
-
T. Creighton. Oxford University Press
-
Krishna R., Wold F. Identifcation of common post-translational modifications. Creighton T. Protein structure-A Practical Approach. 2nd edit. :1997;91-116 Oxford University Press
-
(1997)
Protein Structure-A Practical Approach 2nd Edit.
, pp. 91-116
-
-
Krishna, R.1
Wold, F.2
-
87
-
-
0030731108
-
The complete genome sequence of the Gram-positive bacterium Bacillus subtilis
-
Kunst F., Ogasawara N., Moszer I., Albertini A.M., Alloni G., Azevedo V., Bertero M.G., Bessieres P., Bolotin A., Borchert S., Borriss R., Boursier L., Brans A., Braun M., Brignell S.C., et al. The complete genome sequence of the Gram-positive bacterium Bacillus subtilis. Nature. 390:1997;249-256
-
(1997)
Nature
, vol.390
, pp. 249-256
-
-
Kunst, F.1
Ogasawara, N.2
Moszer, I.3
Albertini, A.M.4
Alloni, G.5
Azevedo, V.6
Bertero, M.G.7
Bessieres, P.8
Bolotin, A.9
Borchert, S.10
Borriss, R.11
Boursier, L.12
Brans, A.13
Braun, M.14
Brignell, S.C.15
-
88
-
-
0032102792
-
Identifying proteins and post-translational modifications by mass spectrometry
-
Küster B., Mann M. Identifying proteins and post-translational modifications by mass spectrometry. Curr. Opin. Struct. Biol. 8:1998;393-400
-
(1998)
Curr. Opin. Struct. Biol.
, vol.8
, pp. 393-400
-
-
Küster, B.1
Mann, M.2
-
89
-
-
0030571222
-
Pathway analysis, engineering, and physiological considerations for redirecting central metabolism
-
Liao J.C., Hou S.-Y., Chao Y.-P. Pathway analysis, engineering, and physiological considerations for redirecting central metabolism. Biotechnol. Bioeng. 52:1996;129-140
-
(1996)
Biotechnol. Bioeng.
, vol.52
, pp. 129-140
-
-
Liao, J.C.1
Hou, S.-Y.2
Chao, Y.-P.3
-
90
-
-
0030751012
-
Identification of the major proteome composition of Haemophilus influenzae type-strain NCTC 8143
-
Link A.J., Hays L.G., Carmack E.B., Yates J.R. Identification of the major proteome composition of Haemophilus influenzae type-strain NCTC 8143. Electrophoresis. 18:1997;1314-1334
-
(1997)
Electrophoresis
, vol.18
, pp. 1314-1334
-
-
Link, A.J.1
Hays, L.G.2
Carmack, E.B.3
Yates, J.R.4
-
91
-
-
0032519353
-
GeneMark. hmm: New solutions for gene finding
-
Lukashin A.V., Borodovsky M. GeneMark. hmm new solutions for gene finding. Nucl. Acid Res. 26:1998;1107-1115
-
(1998)
Nucl. Acid Res.
, vol.26
, pp. 1107-1115
-
-
Lukashin, A.V.1
Borodovsky, M.2
-
92
-
-
0030960276
-
Predicting coiled coil regions in proteins
-
Lupas A. Predicting coiled coil regions in proteins. Curr. Opin. Struct. Biol. 7:1997;388-393
-
(1997)
Curr. Opin. Struct. Biol.
, vol.7
, pp. 388-393
-
-
Lupas, A.1
-
95
-
-
0026332291
-
Evidence for horizontal transfer in Escherichia coli speciation
-
Medigue C., Rouxel T., Vigier P., Henaut A., Danchin A. Evidence for horizontal transfer in Escherichia coli speciation. J. Mol. Biol. 222:1991;851-856
-
(1991)
J. Mol. Biol.
, vol.222
, pp. 851-856
-
-
Medigue, C.1
Rouxel, T.2
Vigier, P.3
Henaut, A.4
Danchin, A.5
-
98
-
-
0032584101
-
Strand compositional asymmetry in bacterial and large viral genomes
-
Mrazek J., Karlin S. Strand compositional asymmetry in bacterial and large viral genomes. Proc. Natl Acad. Sci. USA. 95:1998;3720-3725
-
(1998)
Proc. Natl Acad. Sci. USA
, vol.95
, pp. 3720-3725
-
-
Mrazek, J.1
Karlin, S.2
-
99
-
-
0030210340
-
Gene order is not conserved in bacterial evolution
-
Mushegian A.R., Koonin E.V. Gene order is not conserved in bacterial evolution. Trends Genet. 12:1996;289-290
-
(1996)
Trends Genet.
, vol.12
, pp. 289-290
-
-
Mushegian, A.R.1
Koonin, E.V.2
-
100
-
-
0029789824
-
A minimal gene set for cellular life derived by comparison of complete bacterial genomes
-
Mushegian A.R., Koonin E.V. A minimal gene set for cellular life derived by comparison of complete bacterial genomes. Proc. Natl Acad. Sci. USA. 93:1996;10268-10273
-
(1996)
Proc. Natl Acad. Sci. USA
, vol.93
, pp. 10268-10273
-
-
Mushegian, A.R.1
Koonin, E.V.2
-
101
-
-
0030614959
-
Identification of prokaryotic and eukaryotic signal peptides and prediction of their cleavage sites
-
Nielsen H., Engelbrecht J., Brunak S., von Heijne G. Identification of prokaryotic and eukaryotic signal peptides and prediction of their cleavage sites. Protein Eng. 10:1997;1-6
-
(1997)
Protein Eng.
, vol.10
, pp. 1-6
-
-
Nielsen, H.1
Engelbrecht, J.2
Brunak, S.3
Von Heijne, G.4
-
102
-
-
0030917475
-
Network organization of cell metabolism: Monosaccharide interconversion
-
Nuño J.C., Sánchez-Valdenebro I., Pérez-Iratxeta C., Meléndez-Hevia E., Montero F. Network organization of cell metabolism monosaccharide interconversion. Biochem. J. 324:1997;103-111
-
(1997)
Biochem. J.
, vol.324
, pp. 103-111
-
-
Nuño, J.C.1
Sánchez-Valdenebro, I.2
Pérez-Iratxeta, C.3
Meléndez-Hevia, E.4
Montero, F.5
-
104
-
-
0030971398
-
A study of learning splice sites of DNA sequence by neural networks
-
Ogura H., Agata H., Xie M., Odaka T., Furutani H. A study of learning splice sites of DNA sequence by neural networks. Comput. Biol. Med. 27:1997;67-75
-
(1997)
Comput. Biol. Med.
, vol.27
, pp. 67-75
-
-
Ogura, H.1
Agata, H.2
Xie, M.3
Odaka, T.4
Furutani, H.5
-
105
-
-
0030750492
-
From gene to screen with yeast
-
Oliver S.G. From gene to screen with yeast. Curr. Opin. Genet. Dev. 7:1997;405-409
-
(1997)
Curr. Opin. Genet. Dev.
, vol.7
, pp. 405-409
-
-
Oliver, S.G.1
-
106
-
-
9044244532
-
The metabolic pathway collection from EMP: The enzymes and metabolic pathways database
-
Overbeek R., Panyushkina E., Pronevitch L., Selkov E. Jr, Yunus I. The metabolic pathway collection from EMP the enzymes and metabolic pathways database. Nucl. Acids Res. 24:1996;26-28
-
(1996)
Nucl. Acids Res.
, vol.24
, pp. 26-28
-
-
Overbeek, R.1
Panyushkina, E.2
Pronevitch, L.3
Selkov Jr., E.4
Yunus, I.5
-
107
-
-
0342378158
-
Representation of function: The next step
-
Overbeek R., Larsen N., Smith W., Maltsev N., Selkov E. Representation of function the next step. Gene. 191:1997;GC1-GC9
-
(1997)
Gene
, vol.191
-
-
Overbeek, R.1
Larsen, N.2
Smith, W.3
Maltsev, N.4
Selkov, E.5
-
108
-
-
0030641668
-
What lies beyond bioinformatics?
-
Palsson B.O. What lies beyond bioinformatics? Nature Biotechnol. 15:1997;3-4
-
(1997)
Nature Biotechnol.
, vol.15
, pp. 3-4
-
-
Palsson, B.O.1
-
109
-
-
0032512799
-
Empirical statistical estimates for sequence similarity searches
-
Pearson W.R. Empirical statistical estimates for sequence similarity searches. J. Mol. Biol. 276:1998;71-84
-
(1998)
J. Mol. Biol.
, vol.276
, pp. 71-84
-
-
Pearson, W.R.1
-
110
-
-
0029198382
-
Investigations of Escherichia coli promoter sequences with artificial neural networks: New signals discovered upstream of the transcriptional startpoint
-
Pedersen A.G., Engelbrecht J. Investigations of Escherichia coli promoter sequences with artificial neural networks new signals discovered upstream of the transcriptional startpoint. Intelligent Systems Mol. Biol. 3:1995;292-299
-
(1995)
Intelligent Systems Mol. Biol
, vol.3
, pp. 292-299
-
-
Pedersen, A.G.1
Engelbrecht, J.2
-
111
-
-
0028151542
-
A super-family of medium-chain dehydrogenases/reductases (MDR)
-
Persson B., Zigler J.S. Jr, Jörnvall H. A super-family of medium-chain dehydrogenases/reductases (MDR). Eur. J. Biochem. 226:1994;15-22
-
(1994)
Eur. J. Biochem.
, vol.226
, pp. 15-22
-
-
Persson, B.1
Zigler Jr., J.S.2
Jörnvall, H.3
-
112
-
-
0026326815
-
The recruitment of crystallins: New functions precede gene duplication
-
Piatigorsky J., Wistow G. The recruitment of crystallins new functions precede gene duplication. Science. 252:1991;1078-1079
-
(1991)
Science
, vol.252
, pp. 1078-1079
-
-
Piatigorsky, J.1
Wistow, G.2
-
113
-
-
0031441913
-
The comparative metabolism of the mollicutes (Mycoplasmas) the utility for taxonomic classification and the relationship of putative gene annotation and phylogeny to enzymatic function in the smallest free-living cells
-
Pollack J.D., Williams M.V., McElhaney R.N. The comparative metabolism of the mollicutes (Mycoplasmas) the utility for taxonomic classification and the relationship of putative gene annotation and phylogeny to enzymatic function in the smallest free-living cells. Crit. Rev. Microbiol. 23:1997;269-354
-
(1997)
Crit. Rev. Microbiol.
, vol.23
, pp. 269-354
-
-
Pollack, J.D.1
Williams, M.V.2
McElhaney, R.N.3
-
114
-
-
0032029974
-
Large CAG/CTG repeat templates produced by PCR, usefulness for the DIRECT method of cloning genes with CAG/CTG repeat expansions
-
Pujana M.A., Volpini V., Estivill X. Large CAG/CTG repeat templates produced by PCR, usefulness for the DIRECT method of cloning genes with CAG/CTG repeat expansions. Nucl. Acids Res. 26:1998;1352-1353
-
(1998)
Nucl. Acids Res.
, vol.26
, pp. 1352-1353
-
-
Pujana, M.A.1
Volpini, V.2
Estivill, X.3
-
116
-
-
0031955430
-
Estimation of errors in "raw" DNA sequences: A validation study
-
Richterich P. Estimation of errors in "raw" DNA sequences a validation study. Genome Res. 8:1998;251-259
-
(1998)
Genome Res.
, vol.8
, pp. 251-259
-
-
Richterich, P.1
-
117
-
-
0032102745
-
Systems for categorizing functions of gene products
-
Riley M. Systems for categorizing functions of gene products. Curr. Opin. Struct. Biol. 8:1998;388-392
-
(1998)
Curr. Opin. Struct. Biol.
, vol.8
, pp. 388-392
-
-
Riley, M.1
-
119
-
-
0030824122
-
Sisyphus and the prediction of protein structure
-
Rost B., Donoghue S. Sisyphus and the prediction of protein structure. Comp. Appl. Biosci. 13:1997;345-356
-
(1997)
Comp. Appl. Biosci.
, vol.13
, pp. 345-356
-
-
Rost, B.1
Donoghue, S.2
-
120
-
-
0030603223
-
Identification of the gene-richest bands in human chromosomes
-
Saccone S., Caccio S., Kusuda J., Andreozzi L., Bernardi G. Identification of the gene-richest bands in human chromosomes. Gene. 174:1996;85-94
-
(1996)
Gene
, vol.174
, pp. 85-94
-
-
Saccone, S.1
Caccio, S.2
Kusuda, J.3
Andreozzi, L.4
Bernardi, G.5
-
121
-
-
0028011140
-
Post-transcriptional regulation of the str operon in Escherichia coli; Structural and mutational analysis of the target site for translational repressor S7
-
Saito K., Nomura M. Post-transcriptional regulation of the str operon in Escherichia coli; structural and mutational analysis of the target site for translational repressor S7. J. Mol. Biol. 255:1994;125-139
-
(1994)
J. Mol. Biol.
, vol.255
, pp. 125-139
-
-
Saito, K.1
Nomura, M.2
-
122
-
-
0031307019
-
Evaluation of comparative protein structure modeling by MODELLER-3
-
Sanchez R., Sali A. Evaluation of comparative protein structure modeling by MODELLER-3. Proteins: Struct. Funct. Genet. Suppl. 1:1997;50-58
-
(1997)
Proteins: Struct. Funct. Genet.
, vol.1
, pp. 50-58
-
-
Sanchez, R.1
Sali, A.2
-
123
-
-
0026030641
-
Database of homology-derived protein structures and the structural meaning of sequence alignment
-
Sander C., Schneider R. Database of homology-derived protein structures and the structural meaning of sequence alignment. Proteins: Struct. Funct. Genet. 9:1991;56-68
-
(1991)
Proteins: Struct. Funct. Genet.
, vol.9
, pp. 56-68
-
-
Sander, C.1
Schneider, R.2
-
124
-
-
0032568655
-
SMART, a simple modular architecture research tool: Identification of signalling domains
-
Schultz J., Milpetz F., Bork P., Ponting C.P. SMART, a simple modular architecture research tool Identification of signalling domains. Proc. Natl Acad. Sci. USA. 95:1998;5857-5864
-
(1998)
Proc. Natl Acad. Sci. USA
, vol.95
, pp. 5857-5864
-
-
Schultz, J.1
Milpetz, F.2
Bork, P.3
Ponting, C.P.4
-
125
-
-
0030574066
-
Control analysis in terms of generalized variables characterizing metabolic systems
-
Schuster S. Control analysis in terms of generalized variables characterizing metabolic systems. J. Theoret. Biol. 182:1996;259-268
-
(1996)
J. Theoret. Biol.
, vol.182
, pp. 259-268
-
-
Schuster, S.1
-
126
-
-
0000029295
-
On elementary flux modes in biochemical reaction systems at steady state
-
Schuster S., Hilgetag C. On elementary flux modes in biochemical reaction systems at steady state. J. Biol. Syst. 2:1994;165-182
-
(1994)
J. Biol. Syst.
, vol.2
, pp. 165-182
-
-
Schuster, S.1
Hilgetag, C.2
-
127
-
-
0009682315
-
What information about the conserved-moiety structure of chemical reaction systems can be derived from their stoichiometry?
-
Schuster S., Hilgetag C. What information about the conserved-moiety structure of chemical reaction systems can be derived from their stoichiometry? J. Phys. Chem. 99:1995;8017-8023
-
(1995)
J. Phys. Chem.
, vol.99
, pp. 8017-8023
-
-
Schuster, S.1
Hilgetag, C.2
-
128
-
-
9044244532
-
The metabolic pathway collection from EMP: The enzymes and metabolic pathways database
-
Selkov E., Basmanova S., Gaasterland T., Goryanin I., Gretchkin Y., Maltsev N., Nenashev V., Overbeek R., Panyushkina E., Pronevitch L., Selkov E. Jr, Yunus I. The metabolic pathway collection from EMP the enzymes and metabolic pathways database. Nucl. Acids Res. 24:1996;26-28
-
(1996)
Nucl. Acids Res.
, vol.24
, pp. 26-28
-
-
Selkov, E.1
Basmanova, S.2
Gaasterland, T.3
Goryanin, I.4
Gretchkin, Y.5
Maltsev, N.6
Nenashev, V.7
Overbeek, R.8
Panyushkina, E.9
Pronevitch, L.10
Selkov Jr., E.11
Yunus, I.12
-
129
-
-
0343488601
-
A reconstruction of the metabolism of Methanococcus janaschii from sequence data
-
Selkov E., Maltsev N., Olsen G.J., Overbeek R., Whitman W.B. A reconstruction of the metabolism of Methanococcus janaschii from sequence data. Gene. 197:1997;GC11-GC26
-
(1997)
Gene
, vol.197
-
-
Selkov, E.1
Maltsev, N.2
Olsen, G.J.3
Overbeek, R.4
Whitman, W.B.5
-
130
-
-
0023995387
-
MPS: An artificially intelligent software system for the analysis and synthesis of metabolic pathways
-
Seressiotis A., Bailey J.E. MPS An artificially intelligent software system for the analysis and synthesis of metabolic pathways. Biotechnol. Bioeng. 31:1988;587-602
-
(1988)
Biotechnol. Bioeng.
, vol.31
, pp. 587-602
-
-
Seressiotis, A.1
Bailey, J.E.2
-
131
-
-
0031936948
-
Molecular evolution of the aldo-keto reductase gene superfamily
-
Serry L.T., Nestor P.V., FitzGerald G.A. Molecular evolution of the aldo-keto reductase gene superfamily. J. Mol. Evol. 46:1998;139-146
-
(1998)
J. Mol. Evol.
, vol.46
, pp. 139-146
-
-
Serry, L.T.1
Nestor, P.V.2
Fitzgerald, G.A.3
-
132
-
-
15644383855
-
Complete genome sequence of Methanobacterium thermoautotrophicum Δh: Functional analysis and comparative genomics
-
Smith D.R., Doucette-Stamm L.A., Deloughery C., Lee H., Dubois J., Aldredge T., Bashirzadeh R., Blakely D., Cook R., Gilbert K., Harrison D., Hoang L., Keagle P., Lumm P., Pothier B., et al. Complete genome sequence of Methanobacterium thermoautotrophicum ΔH functional analysis and comparative genomics. J. Bacteriol. 179:1997;7135-7155
-
(1997)
J. Bacteriol.
, vol.179
, pp. 7135-7155
-
-
Smith, D.R.1
Doucette-Stamm, L.A.2
Deloughery, C.3
Lee, H.4
Dubois, J.5
Aldredge, T.6
Bashirzadeh, R.7
Blakely, D.8
Cook, R.9
Gilbert, K.10
Harrison, D.11
Hoang, L.12
Keagle, P.13
Lumm, P.14
Pothier, B.15
-
133
-
-
0032127026
-
Functional genomics - Bioinformatics is ready for the challenge
-
Smith T.F. Functional genomics - bioinformatics is ready for the challenge. Trends Genet. 14:1998;291-293
-
(1998)
Trends Genet.
, vol.14
, pp. 291-293
-
-
Smith, T.F.1
-
134
-
-
0031279916
-
The challenges of genome sequence annotation or "the devil is in the details"
-
Smith T.F., Zhang X. The challenges of genome sequence annotation or "The devil is in the details" Nature Biotechnol. 15:1997;1222-1223
-
(1997)
Nature Biotechnol.
, vol.15
, pp. 1222-1223
-
-
Smith, T.F.1
Zhang, X.2
-
135
-
-
0031813130
-
Pfam: Multiple sequence alignments and HMM-profiles of protein domains
-
Sonnhammer E.L., Eddy S.R., Birney E., Bateman A., Durbin R. Pfam multiple sequence alignments and HMM-profiles of protein domains. Nucl. Acids Res. 26:1998;320-322
-
(1998)
Nucl. Acids Res.
, vol.26
, pp. 320-322
-
-
Sonnhammer, E.L.1
Eddy, S.R.2
Birney, E.3
Bateman, A.4
Durbin, R.5
-
136
-
-
0024385974
-
Methods for discovering novel motifs in nucleic acid sequences
-
Staden R. Methods for discovering novel motifs in nucleic acid sequences. Comp. Appl. Biosci. 5:1989;293-298
-
(1989)
Comp. Appl. Biosci.
, vol.5
, pp. 293-298
-
-
Staden, R.1
-
137
-
-
0030953242
-
Microbial pathogenesis: Genomics and beyond
-
Strauss E.J., Falkow S. Microbial pathogenesis genomics and beyond. Science. 276:1997;707-712
-
(1997)
Science
, vol.276
, pp. 707-712
-
-
Strauss, E.J.1
Falkow, S.2
-
138
-
-
0030111235
-
Metabolism and evolution of Haemophilus influenzae deduced from a whole-genome comparison with Escherichia coli
-
Tatusov R.L., Mushegian A.R., Bork P., Brown N.P., Hayes W.S., Borodovsky M., Rudd K.E., Koonin E.V. Metabolism and evolution of Haemophilus influenzae deduced from a whole-genome comparison with Escherichia coli. Curr. Biol. 6:1996;279-291
-
(1996)
Curr. Biol.
, vol.6
, pp. 279-291
-
-
Tatusov, R.L.1
Mushegian, A.R.2
Bork, P.3
Brown, N.P.4
Hayes, W.S.5
Borodovsky, M.6
Rudd, K.E.7
Koonin, E.V.8
-
139
-
-
0030660581
-
A genomic perspective on protein families
-
Tatusov R.L., Koonin E.V., Lipman D.J. A genomic perspective on protein families. Science. 278:1997;631-637
-
(1997)
Science
, vol.278
, pp. 631-637
-
-
Tatusov, R.L.1
Koonin, E.V.2
Lipman, D.J.3
-
140
-
-
0030574067
-
Design of metabolic control for large flux changes
-
Thomas S., Fell D.A. Design of metabolic control for large flux changes. J. Theoret. Biol. 182:1996;285-298
-
(1996)
J. Theoret. Biol.
, vol.182
, pp. 285-298
-
-
Thomas, S.1
Fell, D.A.2
-
141
-
-
0031010292
-
Prediction of probable genes by Fourier analysis of genomic sequences
-
Tiwari S., Ramachandran S., Bhattacharya A., Bhattacharya S., Ramaswamy R. Prediction of probable genes by Fourier analysis of genomic sequences. Comp. Appl. Biosci. 13:1997;263-270
-
(1997)
Comp. Appl. Biosci.
, vol.13
, pp. 263-270
-
-
Tiwari, S.1
Ramachandran, S.2
Bhattacharya, A.3
Bhattacharya, S.4
Ramaswamy, R.5
-
142
-
-
0030835739
-
The complete genome sequence of the gastric pathogen Helicobacter pylori
-
Tomb J.F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., et al. The complete genome sequence of the gastric pathogen Helicobacter pylori. Nature. 388:1997;539-547
-
(1997)
Nature
, vol.388
, pp. 539-547
-
-
Tomb, J.F.1
White, O.2
Kerlavage, A.R.3
Clayton, R.A.4
Sutton, G.G.5
Fleischmann, R.D.6
Ketchum, K.A.7
Klenk, H.P.8
Gill, S.9
Dougherty, B.A.10
Nelson, K.11
Quackenbush, J.12
Zhou, L.13
Kirkness, E.F.14
Peterson, S.15
-
143
-
-
0030474941
-
Interfering contexts of regulatory sequence elements
-
Trifonov E.N. Interfering contexts of regulatory sequence elements. Comp. Appl. Biosci. 12:1996;423-429
-
(1996)
Comp. Appl. Biosci.
, vol.12
, pp. 423-429
-
-
Trifonov, E.N.1
-
144
-
-
0030964526
-
Silencing factors participate in DNA repair and recombination in Saccharomyces cerevisiae
-
Tsukamoto Y., Kato J., Ikeda H. Silencing factors participate in DNA repair and recombination in Saccharomyces cerevisiae. Nature. 388:1997;900-903
-
(1997)
Nature
, vol.388
, pp. 900-903
-
-
Tsukamoto, Y.1
Kato, J.2
Ikeda, H.3
-
146
-
-
0031566015
-
In search of differentially expressed genes and proteins
-
Vietor I., Huber L.A. In search of differentially expressed genes and proteins. Biochim Biophys Acta. 1359:1997;187-199
-
(1997)
Biochim Biophys Acta
, vol.1359
, pp. 187-199
-
-
Vietor, I.1
Huber, L.A.2
-
147
-
-
0026716643
-
Membrane protein structure prediction, hydrophobicity analysis and the positive inside rule
-
von Heijne G. Membrane protein structure prediction, hydrophobicity analysis and the positive inside rule. J. Mol. Biol. 225:1992;487-494
-
(1992)
J. Mol. Biol.
, vol.225
, pp. 487-494
-
-
Von Heijne, G.1
-
148
-
-
0031937512
-
Genomic organization and promotor identification of the human protein kinase CK2 catalytic subunit alpha
-
Wirkner U., Voss H., Ansorge W., Pyerin W. Genomic organization and promotor identification of the human protein kinase CK2 catalytic subunit alpha. Genomics. 48:1998;71-78
-
(1998)
Genomics
, vol.48
, pp. 71-78
-
-
Wirkner, U.1
Voss, H.2
Ansorge, W.3
Pyerin, W.4
-
149
-
-
0029867505
-
Identification of functional elements in unaligned nucleic acid sequences by a novel tuple search algorithm
-
Wolfertstetter F., Frech K., Herrmann G., Werner T. Identification of functional elements in unaligned nucleic acid sequences by a novel tuple search algorithm. Comp. Appl. Biosci. 12:1996;71-80
-
(1996)
Comp. Appl. Biosci.
, vol.12
, pp. 71-80
-
-
Wolfertstetter, F.1
Frech, K.2
Herrmann, G.3
Werner, T.4
-
150
-
-
0029901640
-
Analysis of compositionally biased regions in sequence databases
-
Wootton J.C., Federhen S. Analysis of compositionally biased regions in sequence databases. Methods Enzymol. 266:1996;554-571
-
(1996)
Methods Enzymol.
, vol.266
, pp. 554-571
-
-
Wootton, J.C.1
Federhen, S.2
-
151
-
-
0030730857
-
Cells that register logical relationships among proteins
-
Xu C.W., Mendelsohn A.R., Brent R. Cells that register logical relationships among proteins. Proc. Natl Acad. Sci. USA. 94:1997;12473-12478
-
(1997)
Proc. Natl Acad. Sci. USA
, vol.94
, pp. 12473-12478
-
-
Xu, C.W.1
Mendelsohn, A.R.2
Brent, R.3
-
152
-
-
0031962612
-
Mass spectrometry and the age of the proteome
-
Yates J.R. III. Mass spectrometry and the age of the proteome. J. Mass Spectrom. 33:1998;1-19
-
(1998)
J. Mass Spectrom.
, vol.33
, pp. 1-19
-
-
Yates III, J.R.1
-
154
-
-
0030962307
-
Gene expression profiles in normal and cancer cells
-
Zhang L., Zhou W., Velculescu V.E., Kern S.E., Hruban R.H., Hamilton S.R., Vogelstein B., Kinzler K.W. Gene expression profiles in normal and cancer cells. Science. 276:1997;1268-1272
-
(1997)
Science
, vol.276
, pp. 1268-1272
-
-
Zhang, L.1
Zhou, W.2
Velculescu, V.E.3
Kern, S.E.4
Hruban, R.H.5
Hamilton, S.R.6
Vogelstein, B.7
Kinzler, K.W.8
-
155
-
-
0030724420
-
From expressed sequence tags to 'epigenomics' an understanding of disease processes
-
Zweiger G., Scott R.W. From expressed sequence tags to 'epigenomics' an understanding of disease processes. Curr. Opin. Biotechnol. 8:1997;684-687
-
(1997)
Curr. Opin. Biotechnol.
, vol.8
, pp. 684-687
-
-
Zweiger, G.1
Scott, R.W.2
|