메뉴 건너뛰기




Volumn 13, Issue 3, 1997, Pages 263-270

Prediction of probable genes by fourier analysis of genomic sequences

Author keywords

[No Author keywords available]

Indexed keywords

ACCURACY; ARTICLE; COMPUTER PROGRAM; DNA SEQUENCE; FOURIER ANALYSIS; GENE SEQUENCE; GENOME; OPEN READING FRAME; PERIODICITY; PREDICTION; PRIORITY JOURNAL; SPECTROSCOPY;

EID: 0031010292     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/13.3.263     Document Type: Article
Times cited : (414)

References (32)
  • 2
    • 0024284149 scopus 로고
    • The GenBank genetic sequence data bank
    • Bilofsky.H.S. and Burks.C. (1988) The GenBank genetic sequence data bank. Nucleic Acids Res., 16, 1861-1864.
    • (1988) Nucleic Acids Res , vol.16 , pp. 1861-1864
    • Bilofsky, H.S.1    Burks, C.2
  • 4
    • 0027940025 scopus 로고
    • New genes in old sequence: A strategy for finding genes in the bacterial genome
    • Borodovsky, M., Koonm.E.V. and Rudd.K.E. (1994) New genes in old sequence: a strategy for finding genes in the bacterial genome. Trends Biochem Sci., 19, 309-313.
    • (1994) Trends Biochem Sci , vol.19 , pp. 309-313
    • Borodovsky, M.1    Koonm, E.V.2    Rudd, K.E.3
  • 5
    • 33748690289 scopus 로고
    • Long-range correlation properties of coding and noncoding DNA sequences: GenBank analysis
    • Buldyrev, S.V. et al. (1995) Long-range correlation properties of coding and noncoding DNA sequences: GenBank analysis. Phvs. Rev. E, 51, 5084-5094.
    • (1995) Phvs. Rev. E , vol.51 , pp. 5084-5094
    • Buldyrev, S.V.1
  • 6
    • 0030585734 scopus 로고    scopus 로고
    • Evaluation of Gene Structure prediction programs
    • Burset, M. and Guigo, R. (1996) Evaluation of Gene Structure prediction programs. Genomics, 34, 353-367. (Sequences for analysis were obtained from the database maintained at the URL http://www.imim.es/GeneIdentifi-cation/Evaluation/Index.html.)
    • (1996) Genomics , vol.34 , pp. 353-367
    • Burset, M.1    Guigo, R.2
  • 7
    • 0001913645 scopus 로고
    • Size dependence of three-penodicity and long range correlations in DNA sequences
    • Chechetkin.V.R. and Turygin.A.Y. (1995) Size dependence of three-penodicity and long range correlations in DNA sequences. Phys. Lett. A, 199, 75-80.
    • (1995) Phys. Lett. A , vol.199 , pp. 75-80
    • Chechetkin, V.R.1    Turygin, A.Y.2
  • 8
    • 0027944162 scopus 로고
    • Gene structure prediction by linguistic methods
    • Dong, S. and Searls, D.B. (1994) Gene structure prediction by linguistic methods. Genomics. 23, 540-551.
    • (1994) Genomics , vol.23 , pp. 540-551
    • Dong, S.1    Searls, D.B.2
  • 9
    • 0026736363 scopus 로고
    • Determination of eukaryotic protein coding regions using neural networks and information theory
    • Farber, R.B., Lapedes, A.S. and Sirotkin, K.M. (1992) Determination of eukaryotic protein coding regions using neural networks and information theory. J. Mol Biol.. 226, 471-479.
    • (1992) J. Mol Biol. , vol.226 , pp. 471-479
    • Farber, R.B.1    Lapedes, A.S.2    Sirotkin, K.M.3
  • 10
    • 0020480512 scopus 로고
    • Recognition of protein coding regions in DNA sequences
    • Fickett.J.W. (1982) Recognition of protein coding regions in DNA sequences. Nucleic Acids Res., 10, 5303-5318.
    • (1982) Nucleic Acids Res , vol.10 , pp. 5303-5318
    • Fickett, J.W.1
  • 11
    • 0000377189 scopus 로고    scopus 로고
    • The Gene Identification Problem: An overview for developers
    • Fickett.J.W. (1996) The Gene Identification Problem: An overview for developers. Comput. Chem., 20, 103-118.
    • (1996) Comput. Chem. , vol.20 , pp. 103-118
    • Fickett, J.W.1
  • 12
    • 0027059264 scopus 로고
    • Assessment of protein coding measures
    • Fickett.J.W. and Tung.C.L. (1992) Assessment of protein coding measures. Nucleic Acids Res., 20, 6441-6450.
    • (1992) Nucleic Acids Res , vol.20 , pp. 6441-6450
    • Fickett, J.W.1    Tung, C.L.2
  • 13
    • 0029653518 scopus 로고
    • Whole-genome random sequencing and assembly of Haemophilus influenzae Rd"
    • Fleischmann, R.D. et al. (1995) Whole-genome random sequencing and assembly of Haemophilus influenzae Rd". Science, 269, 496-512.
    • (1995) Science , vol.269 , pp. 496-512
    • Fleischmann, R.D.1
  • 14
    • 0028073797 scopus 로고
    • Complete nucleotide sequence of Saccharomyces cerevisiae chromosome VIII
    • Johnston.M. et al. (1994) Complete nucleotide sequence of Saccharomyces cerevisiae chromosome VIII. Science. 265, 2077-2082.
    • (1994) Science , vol.265 , pp. 2077-2082
    • Johnston, M.1
  • 15
    • 0042858983 scopus 로고
    • Application of neural networks and other machine learning algorithms to DNA sequence analysis
    • Bell.G. and Marr.T., Addison-Wesley, Redwood City, CA
    • Lapedes.A.S., Bames.C, Burks.C. Farber.R.M. and Sirotkin.K.M. (1990) Application of neural networks and other machine learning algorithms to DNA sequence analysis. In Bell.G. and Marr.T. (eds). Computers and DNA. Addison-Wesley, Redwood City, CA.
    • (1990) Computers and DNA
    • Lapedes, A.S.1    Bames, C.2    Burks, C.3    Farber, R.M.4    Sirotkin, K.M.5
  • 16
    • 0000893861 scopus 로고
    • Generating non-trivial long-range correlations and I//spectra by duplication and mutation
    • Li.W. (1992) Generating non-trivial long-range correlations and I//spectra by duplication and mutation. Int. J. Bif. Chaos, 2, 137.
    • (1992) Int. J. Bif. Chaos , vol.2 , pp. 137
    • Li, W.1
  • 17
    • 43949156767 scopus 로고
    • Understanding long-range correlations in DNA sequences
    • Li.W., Marr.T.G. and Kaneko.K. (1994) Understanding long-range correlations in DNA sequences. Physica D, 75, 392-416.
    • (1994) Physica D , vol.75 , pp. 392-416
    • Li, W.1    Marr, T.G.2    Kaneko, K.3
  • 19
    • 0026572003 scopus 로고
    • The complete DNA sequence of yeast chromosome III
    • Oliver.S.G. et al. (1992) The complete DNA sequence of yeast chromosome III. Nature, 357. 38-46.
    • (1992) Nature , vol.357 , pp. 38-46
    • Oliver, S.G.1
  • 20
    • 0028242762 scopus 로고
    • Correlation approach to identify coding regions in DNA sequences
    • Ossadnik.S.M. et al. (1994) Correlation approach to identify coding regions in DNA sequences. Biophys. J., 67, 64-70.
    • (1994) Biophys. J. , vol.67 , pp. 64-70
    • Ossadnik, S.M.1
  • 21
    • 0026585152 scopus 로고
    • Long-range correlations in nucleotide sequences
    • Peng, C.-K. et al. (1993) Long-range correlations in nucleotide sequences. Nature, 356, 168-170.
    • (1993) Nature , vol.356 , pp. 168-170
    • Peng, C.-K.1
  • 22
    • 0027605271 scopus 로고
    • Finite-size effects on long-range correlations: Implications for analysing DNA sequences
    • Peng, C.-K. et al. (1993) Finite-size effects on long-range correlations: implications for analysing DNA sequences. Phys. Rev. E, 47, 3730-3733.
    • (1993) Phys. Rev. E , vol.47 , pp. 3730-3733
    • Peng, C.-K.1
  • 23
    • 0027949299 scopus 로고
    • Nucleotide sequence organization and analysis of the nuclear ribosome DNA circle of the protozoan parasite Entamoeba histolytica
    • Sehgal.D., Mittal.V., Ramachandran.S.. Dhar.S.K.. Bhattacharya.A. and Bhattacharya.S. (1994) Nucleotide sequence organization and analysis of the nuclear ribosome DNA circle of the protozoan parasite Entamoeba histolytica. Mol. Biochem. Parasitol., 67, 205-214.
    • (1994) Mol. Biochem. Parasitol. , vol.67 , pp. 205-214
    • Sehgal, D.1    Mittal, V.2    Ramachandran, S.3    Dhar, S.K.4    Bhattacharya, A.5    Bhattacharya, S.6
  • 24
    • 0019482685 scopus 로고
    • The coding function of nucleotide sequences can be discerned by statistical analysis
    • Shulman.M.J., Steiberg.C.M. and Westmoreland.B. (1981) The coding function of nucleotide sequences can be discerned by statistical analysis. J. Theor. Biol., 88. 409-420.
    • (1981) J. Theor. Biol. , vol.88 , pp. 409-420
    • Shulman, M.J.1    Steiberg, C.M.2    Westmoreland, B.3
  • 25
    • 0023043752 scopus 로고
    • A measure of DNA periodicity
    • Silverman.B.D. and Linsker.R. (1986) A measure of DNA periodicity. J Theor. Biol., 118, 295-300.
    • (1986) J Theor. Biol. , vol.118 , pp. 295-300
    • Silverman, B.D.1    Linsker, R.2
  • 26
    • 0028965444 scopus 로고
    • Identification of protein coding regions in genomic DNA
    • Synder.E.E. and Storma.G.D. (1995) Identification of protein coding regions in genomic DNA. J. Mol. Biol., 258, 1-18.
    • (1995) J. Mol. Biol. , vol.258 , pp. 1-18
    • Synder, E.E.1    Storma, G.D.2
  • 27
    • 0025833642 scopus 로고
    • Periodicity in DNA coding sequences: Implications in gene evolution
    • Tsonis.A.A., Elsner.J.B. and Tsonis.P.A. (1991) Periodicity in DNA coding sequences: implications in gene evolution. J. Theor. Biol., 151, 323.
    • (1991) J. Theor. Biol. , vol.151 , pp. 323
    • Tsonis, A.A.1    Elsner, J.B.2    Tsonis, P.A.3
  • 28
    • 0026351408 scopus 로고
    • Locating protein-coding regions in human DNA sequences by a multiple sensor-neural network approach
    • Uberbacher.E.C. and Mural, R.J. (1991) Locating protein-coding regions in human DNA sequences by a multiple sensor-neural network approach. Proc. Natl. Acad. Sci. USA, 88, 11261-11265.
    • (1991) Proc. Natl. Acad. Sci. USA , vol.88 , pp. 11261-11265
    • Uberbacher, E.C.1    Mural, R.J.2
  • 29
    • 0000204878 scopus 로고
    • Evolution of long-range fractal correlations and \lf noise in DNA base sequences
    • Voss.R.F. (1992) Evolution of long-range fractal correlations and \lf noise in DNA base sequences. Phys. Rev. Lett., 68, 3805-3808.
    • (1992) Phys. Rev. Lett. , vol.68 , pp. 3805-3808
    • Voss, R.F.1
  • 30
    • 0028295681 scopus 로고
    • 2.2Mb of contiguous nucleotide sequence from chromosome III of C.elegans
    • Wilson.R. et al. (1994) 2.2Mb of contiguous nucleotide sequence from chromosome III of C.elegans. Nature, 368, 32-38.
    • (1994) Nature , vol.368 , pp. 32-38
    • Wilson, R.1
  • 32
    • 0019887286 scopus 로고
    • Periodicity in DNA-primary structure is defined by secondary structure of the coded protein
    • Zhurkin.V.B. (1981) Periodicity in DNA-primary structure is defined by secondary structure of the coded protein. Nucleic Acids Res., 9. 1963- 1971.
    • (1981) Nucleic Acids Res. , vol.9 , pp. 1963-1971
    • Zhurkin, V.B.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.