Self-identification of protein-coding regions in microbial genomes

Proceedings of the National Academy of Sciences of the United States of America

Volumn 95, Issue 17, 1998, Pages 10026-10031

  Audic, Stéphane ^a   Claverie, Jean Michel ^a  

^a CNRS   (France)

Author keywords

[No Author keywords available]

Indexed keywords

ANIMAL CELL; ARTICLE; AUTOMATION; DNA SEQUENCE; HAEMOPHILUS INFLUENZAE TYPE A; NONHUMAN; PHYLOGENY; PREDICTION; PRIORITY JOURNAL; PROTEIN DETERMINATION; SEQUENCE ANALYSIS; STATISTICAL ANALYSIS; VALIDATION PROCESS;

ALGORITHMS; BACTERIA; BACTERIAL PROTEINS; BASE COMPOSITION; DNA, BACTERIAL; GENETIC TECHNIQUES; GENOME, BACTERIAL; MARKOV CHAINS; MODELS, GENETIC; REPRODUCIBILITY OF RESULTS;

ANIMALIA; BACTERIA (MICROORGANISMS); HAEMOPHILUS; HAEMOPHILUS INFLUENZAE SEROTYPE A; NEGIBACTERIA; PROKARYOTA;

EID: 0032544103     PISSN: 00278424     EISSN: None     Source Type: Journal    
DOI: 10.1073/pnas.95.17.10026     Document Type: Article

References (30)

1. Fleischmann, R. D., Adams, M. D., White, O., Clayton, R. A., Kirkness, E. F., Kerlavage, A. R., Bult, C. J., Tomb, J. F., Dougherty, B. A., Merrick, J. M., et al. (1995) Science 269, 496-512.
2. Fraser, C. M., Gocayne, J. D, White, O., Adams, M. D., Clayton, R. A., Fleischmann, R. D., Bult, C. J., Kerlavage, A. R., Sutton, G., Kelley, J. M., et al. (1995) Science 270, 397-403.
3. Bult, C. J., White, O., Olsen, G. J., Zhou, L., Fleischmann, R. D., Sutton, G. G., Blake, J. A., FitzGerald, L. M., Clayton, R. A., Gocayne, J. D., et al. (1996) Science 273, 1058-1073.
4. Kaneko, T., Sato, S., Kotani, H., Tanaka, A., Asamizu, E., Nakamura, Y., Miyajima, N., Hirosawa, M., Sugiura, M., Sasamoto, S., et al. (1996) DNA Res. 3, 109-136.
5. Himmelreich, R., Hilbert, H., Plagens, H., Pirkl, E., Li, B. C. & Herrmann, R. (1996) Nucleic Acids Res. 24, 4420-4449.
6. Fraser, C. M., Casjens, S., Huang, W. M., Sutton, G., Clayton, R., Lathigra, R., White, O., Ketchum, K. A., Dodson, R., Hickey, E. K., et al. (1997) Nature (London) 390, 580-586.
7. Tomb, J. F., White, O., Kerlavage, A. R., Clayton, R. A., Sutton, G. G., Fleischmann, R. D., Ketchum, K. A., Klenk, H. P., Gill, S., Dougherty, B. A., et al. (1997) Nature (London) 388, 539-547.
8. Blattner, F. R., Plunkett, G., III, Bloch, C. A., Perna, N. T., Burland, V., Riley, M., Collado-Vides, J., Glasner, J. D., Rode, C. K., Mayhew, G. F., et al. (1997) Science 277, 1453-1474.
9. Smith, D. R., Doucette-Stamm, L. A., Deloughery, C., Lee, H., Dubois, J., Aldredge, T., Bashirzadeh, R., Blakely, D., Cook, R., Gilbert, K., et al. (1997) J. Bacteriol. 179, 7135-7155.
10. Kunst, F., Ogasawara, N., Moszer, I., Albertini, A. M., Alloni, G., Azevedo, V., Bertero, M. G., Bessieres, P., Bolotin, A., Borchert, S., et al. (1997) Nature (London) 390, 249-256.
11. Klenk, H. P., Clayton, R. A., Tomb. J. F., White, O., Nelson, K. E., Ketchum, K. A., Dodson, R. J., Gwinn, M., Hickey, E. K., Peterson, J. D., et al. (1997) Nature (London) 390, 364-370.
12. Goffeau, A., Barrell, B. G., Bussey, H., Davis, R. W., Dujon, B., Feldmann, H., Galibert, F., Hoheisel, J. D., Jacq, C., Johnston, M., et al. (1996) Science 274, 546-567.
13. Tatusov, R. L., Koonin, E. V. & Lipman, D. J. (1997) Science 278, 631-637.
14. Fickett, J. W. & Tung, C. S. (1992) Nucleic Acids Res. 20, 6441-6450.
15. Borodovsky, M. & McIninch, J. D. (1993) Comput. Chem. 17, 123-133.
16. Borodovsky, M., McIninch, J. D., Koonin, E. V., Rudd, K. E., Medigue, C. & Danchin, A. (1995) Nucleic Acids Res. 23, 3554-3562.
17. Claverie, J.-M. (1997) Hum. Mol. Genet. 6, 1735-1744.
18. Claverie, J.-M., Poirot, O. & Lopez, F. (1997) Comput. Chem. 21, 203-214.
19. Claverie, J.-M. (1994) Genomics 23, 575-581.
20. Almagor, H. (1983) J. Theor. Biol. 104, 633-645.
21. Borodovsky, M., Sprizhitsky, I., Golovanov, E. I. & Aleksandrov, A. A. (1986) Mol. Biol. (Moscow) 20, 1024-1033.
22. Scherer, S., McPeek, M. S. & Speed, T. P. (1994) Proc. Natl. Acad. Sci. USA 91, 7134-7138.
23. Audic, S. & Claverie, J.-M. (1997) Comput. Chem. 21, 223-227.
24. Benson, D. A., Boguski, M. S., Lipman, D. J., Ostell, J. & Ouellette, B. F. (1998) Nucleic Acids Res. 26, 1-7.
25. Claverie, J.-M. & Bougueleret, L. (1986) Nucleic Acids Res. 14, 179-196.
26. Kleffe, J., Hermann, K. & Borodovsky, M. (1996) Comput. Chem. 20, 123-133.
27. Medigue, C., Rouxel, T., Vigier, P., Henault, A. & Danchin A. (1991) J. Mol. Biol. 222, 851-856.
28. Salzberg, S. L., Delcher, A. L., Kasif, S. & White, O. (1998) Nucleic Acids Res. 26, 544-548.
29. Tiwari, S., Ramachandran, S., Bhattacharya, A., Bhattacharya, S. & Ramaswamy, R. (1997) Comput. Appl. Biosci. 13, 263-270.
30. Lawrence, C. E., Altschul, S. F., Boguski, M. S., Liu, J. S., Neuwald, A. F. & Wootton, J. C. (1993) Science 262, 208-214.