The complete genome sequence of the hyperthermophilic, sulphate-reducing archaeon Archaeoglobus fulgidus

Nature

Volumn 390, Issue 6658, 1997, Pages 364-370

  Klenk, Hans Peter ^a   Clayton, Rebecca A ^a   Tomb, Jean Francois ^a   White, Owen ^a   Nelson, Karen E ^a   Ketchum, Karen A ^a   Dodson, Robert J ^a   Gwinn, Michelle ^a   Hickey, Erin K ^a   Peterson, Jeremy D ^a   Richardson, Delwood L ^a   Kerlavage, Anthony R ^a   Graham, David E ^b   Krypides, Nikos C ^b   Fleischmann, Robert D ^a   Quackenbush, John ^a   Lee, Norman H ^a   Sutton, Granger G ^a   Gill, Steven ^a   Kirkness, Ewen F ^a   Dougherty, Brian A ^a   McKenney, Keith ^a   Adams, Mark D ^a   Loftus, Brendan ^a   Peterson, Scott ^a   Reich, Claudia I ^b   McNeil, Leslie K ^b   Badger, Jonathan H ^b   Glodek, Anna ^a   Zhou, Lixin ^a   Overbeek, Ross ^c   Gocayne, Jeannine D ^a   Wiedman, Janice F ^a   McDonald, Lisa ^a   Utterback, Teresa ^a   Cotton, Matthew D ^a   Spriggs, Tracy ^a   Artiach, Patricia ^a   Kaine, Brian P ^b   Sykes, Sean M ^a   Sadow, Paul W ^a   D'Andrea, Kurt P ^a   Bowman, Cheryl ^a   Fujii, Claire ^a   Garland, Stacey A ^a   Mason, Tanya M ^a   Olsen, Gary J ^b   Fraser, Claire M ^a   Smith, Hamilton O ^a   Woese, Carl R ^b   Craig Venter, J ^a   more..

^a J CRAIG VENTER INSTITUTE   (United States)

^b UNIVERSITY OF ILLINOIS AT URBANA CHAMPAIGN   (United States)

^c ARGONNE NATIONAL LABORATORY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ARCHAEBACTERIUM; ARTICLE; BACTERIAL GENETICS; BIODIVERSITY; GENE SEQUENCE; GENOME; NONHUMAN; PRIORITY JOURNAL; SULFATE REDUCING BACTERIUM; THERMOPHILIC BACTERIUM;

ARCHAEOGLOBUS FULGIDUS; BASE SEQUENCE; CELL DIVISION; DNA, BACTERIAL; ENERGY METABOLISM; GENE EXPRESSION REGULATION, BACTERIAL; GENES, ARCHAEAL; GENOME; MOLECULAR SEQUENCE DATA; PROTEIN BIOSYNTHESIS; TRANSCRIPTION, GENETIC;

ARCHAEA; ARCHAEOGLOBUS FULGIDUS; BACTERIA (MICROORGANISMS); METHANOCALDOCOCCUS JANNASCHII; METHANOCOCCUS; PROKARYOTA;

EID: 0031458333     PISSN: 00280836     EISSN: None     Source Type: Journal    
DOI: 10.1038/37052     Document Type: Article

References (43)

1. Stetter, K. O., Lauerer, G., Thomm, M. & Neuner, A. Isolation of extremely thermophilic sulfate reducers: Evidence for a novel branch of archaebacteria. Science 236, 822-824 (1987).
2. Stetter, K. O., in The Prokaryotes (eds Balows, A., Trüper, H. G., Dworkin, M., Harder, W. & Schleifer, K. H.) 707-711 (Springer, Berlin, 1992).
3. Stetter, K. O. Microbial life in hyperthermal environments: Microorganisms from exotic environments continue to provide surprises about life's extremities. ASM News 61, 285-290 (1995).
4. Stetter, K. O. Archaeoglobus fulgidus gen. nov., sp. nov.: a new taxon of extremely thermophilic archaebacteria. Syst. Appl. Microbiol. 10, 172-173 (1988).
5. Stetter, K. O. et al. Hyperthermophilic archaea are thriving in deep North Sea and Alaskan oil reservoirs. Nature 365, 743-745 (1993).
6. 2 fixation in Archaeoglobus lithotrophicus and the lack of carbon monoxide dehydrogenase in the heterotrophic A. profundus. Arch. Microbiol. 163, 112-118 (1995).
7. Woese, C. R. & Fox, G. E. Phylogenetic structure of the prokaryotic domain: The primary kingdoms. Proc. Natl Acad. Sci. USA 74, 5088-5090 (1977).
8. Woese, C. R., Kandler, O. & Wheelis, M. L. Towards a natural system of organisms: proposal for the domains Archaea, Bacteria, and Eucarya. Proc. Natl Acad. Sci. USA 87, 4576-4579 (1990).
9. Bult, C. J. et al. Complete genome sequence of the methanogenic archaeon Methanococcus jannaschii. Science 273, 1058-1073 (1996).
10. Altschul, S. F., Gish, W., Miller, W., Myers, E. W. & Lipman, D. J. Basic local alignment search tool. J. Mol. Biol. 215, 403-410 (1990).
11. Riley, M. Functions of gene products of Escherichia coli. Microbiol. Rev. 57, 862-952 (1993).
12. Cooling, F, B. III, Maloney, C. L., Nagel, E., Tabinowski, J. & Odom, J. M. Inhibition of sulfate respiration by 1,8-dehydroxyanthraquinone and other anthraquinone derivatives. Appl. Environ. Microbiol. 62, 2999-3004 (1996).
13. Thauer, R. K. & Kunow, J. in Sulfate Reducing Bacteria (ed. Barton, L. L.) 33-48 (Plenum, New York, 1995).
14. Speich, D. et al. Adenylylsulfate reductase from the sulfate-reducing archaeon Archaeoglobus fulgidus: cloning and characterization of the genes and comparison of the enzyme with other iron-sulfur flavoproteins. Microbiology 140, 1273-1284 (1994).
15. Clark, D. P. & Cronan, J. E. Jr in Escherichia coli and Salmonella typhimurium: Cellular and Molecular biology (ed Neidhardt, F. C.) 343-357 (ASM Press, Washington DC, 1996).
16. 2 by Archaeoglobus fulgidus via the carbon monoxide dehydrogenase pathway: demonstration of the acetyl-CoA carbon-carbon cleavage reaction in cell extracts. Arch. Microbiol. 153, 215-218 (1990).
17. 2 in anaerobic-bacteria via a novel pathway not involving reactions of the citric-acid cycle. Arch. Microbiol. 145, 162-172 (1986).
18. Dai, Y.-R. et al. Acetyl-CoA decarbonylase/synthase complex from Archaeoglobus fulgidus: purification, characterization, and properties. Arch. Microbiol. (submitted).
19. Gorris, L. G. M., Voet, A. C. W. A. & van der Drift, C. Structural characteristics of methanogenic cofactors in the non-methanogenic archaebacterium Archaeoglobus fulgidus. BioFactors 3, 29-35 (1991).
20. Zhang, Q., Iwasaki, T., Wakagi, T. & Oshima, T. 2-oxoacid:ferredoxin oxidoreductase from the thermoacidophilic archaeon, Sulfolobus sp. strain 7. J. Biochem. 120, 587-599 (1996).
21. Tersteegen, A., Linder, D., Thauer, R. K. & Hedderich, R. Structures and functions of four anabolic 2-oxoacid oxidoreductases in Methanobacterium thermoautotrophicum. Eur. J. Biochem. 244, 862-868 (1997).
22. Kletzin, A. & Adams, M. W. W. Molecular and phylogenetic characterization of pyruvate and 2-ketoisovalerate ferredoxin oxidoreductases from Pyrococcus furiosus and pyruvate ferredoxin oxidoreductase from Thermotoga maritima. J. Bacteriol. 178, 248-257 (1996).
23. LaPaglia, C. & Hartzell, P. L. Stress-induced production of biofilm in the hyperthermophile Archaeoglobus fulgidus. Appl. Environ. Microbiol. 63, 3158-3163 (1997).
24. 2: quinone oxidoreductase from Archaeoglobus fulgidus - characterization of a membrane-bound mutlisubunit complex containing FAD and iron-sulfur clusters. Eur. J. Biochem. 223, 503-511 (1994).
25. Yeliseev, A.A., Krueger, K. E. & Kaplan, S. A mammalian mitochondrial drug receptor functions as a bacterial "oxygen" sensor. Proc. Natl Acad. Sci. USA 94, 5101-5106 (1997).
26. Edgell, D. R., Klenk, H.-P. & Doolittle, W. F. Gene duplications in evolution of archaeal family B DNA polymerases. J. Bacteriol. 179, 2632-2640 (1997).
27. Bergerat, A. et al. An atypical topoisomerase II from archaea with implications for meiotic recombination. Nature 386, 414-417 (1997).
28. Marsh, T. L., Reich, C. I., Whitelock, R. B. & Olsen, G. J. Transcription factor IID in the Archaea: sequences in the Thermococcus celer genome would encode a product closely related to the TATA-binding protein of eukaryotes. Proc. Natl Acad. Sci. USA 91, 4180-4184 (1994).
29. Kosa, P. F., Ghosh, G., DeDecker, B. S. & Sigler, P. B. The 2.1-A crystal structure of an archaeal preinitiation complex: TATA-box-binding protein/transcription factor (II)B core/TATA-box. Proc. Natl Acad. USA 94, 6042-6047 (1997).
30. Gln amidotransferase: a novel heterotrimeric enzyme required for correct decoding of glutamine codons during translation. Proc. Natl Acad. Sci. USA 94, 11819-11826 (1997).
31. Ibba, M., Bobo, J. L., Rosa, P. A. & Soll, D. Archaeal-type lysyl-tRNA synthetase in the Lyme disease spirochete Borrelia burgdorferi. Proc. Natl Acad. Sci. USA (submitted).
32. Waldmann, T., Lupas, A., Kellermann, J., Peters, J. & Baumeister, W. Primary structure of the thermosome from Thermoplasma acidophilum. Hoppe-Seyler's Biol. Chem. 376, 119-126 (1995).
33. Kagawa, H. K. et al. The 60 kDa heat shock proteins in the hyperthermophilic archaeon Sulfolobus shibatae. J. Mol. Biol. 253, 712-725 (1995).
34. Noll, K. M. & Barber, T. S. Vitamin contents of archaebacteria. J. Bacteriol. 170, 4315-4321 (1988).
35. Thornebene, T. G. & Langworthy, T. A. Diphytanyl and dibiphytanyl glycerol ether lipids of methanogenic archaebacteria. Science 203, 51-53 (1979).
36. Nishihara, M. & Koga, Y. sn-glycerol-1-phosphate dehydrogenase in Methanobacterium thermoautotrophicum: key enzyme in biosynthesis of the enantiomeric glycerophosphate backbone of ether phospholipids of archaebacteria. J. Biochem. 117, 933-935 (1995).
37. Huber, R. et al. Isolation of a hyperthermophilk archaeum predicted by in situ RNA analysis. Nature 388, 57-58 (1995).
38. Fleischmann, R. D. et al. Whole-genome random sequencing and assembly of Haemophilus influence Rd. Science 269, 496-511 (1995).
39. Fraser, C. M. et al. The minimal gene complement of Mycoplasma genitalium. Science 270, 397-403 (1995).
40. Tomb, J.-F. et al. The complete genome sequence of the gastric pathogen Helicobacter pylori. Nature 388, 539-547 (1997).
41. Sutton, G. G., White, O., Adams, M. D. & Kerlavage, A. R. TIGR Assembler: A new tool for assembling large shotgun sequencing projects. Genome Sequence Technol. 1, 9-19 (1995).
42. Sonnhammer, E. L., Eddy, S. R. & Durbin, R. Pfam: A comprehensive database of protein families based on seed alignments. Proteins 28, 405-420 (1997).
43. Claros, M. G. & von Heijne, G. TopPred II: an improved software for membrane protein structure predictions. Comput. Appl. Biosci. 10, 685-686 (1994).