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Volumn 37, Issue 2, 2019, Pages 181-197

Synthetic Biology Tools to Engineer Microbial Communities for Biotechnology

Author keywords

biomaterials; bioproduction; microbial consortia; synthetic biology; synthetic consortia; synthetic microbial communities

Indexed keywords

BIOMATERIALS; BIOTECHNOLOGY; WASTE TREATMENT;

EID: 85057071836     PISSN: 01677799     EISSN: 18793096     Source Type: Journal    
DOI: 10.1016/j.tibtech.2018.11.002     Document Type: Review
Times cited : (336)

References (115)
  • 1
    • 49049105130 scopus 로고    scopus 로고
    • Engineering microbial consortia: a new frontier in synthetic biology
    • Brenner, K., et al. Engineering microbial consortia: a new frontier in synthetic biology. Trends Biotechnol. 26 (2008), 483–489.
    • (2008) Trends Biotechnol. , vol.26 , pp. 483-489
    • Brenner, K.1
  • 2
    • 84929298149 scopus 로고    scopus 로고
    • Microbiota and host nutrition across plant and animal kingdoms
    • Hacquard, S., et al. Microbiota and host nutrition across plant and animal kingdoms. Cell Host Microbe 17 (2015), 603–616.
    • (2015) Cell Host Microbe , vol.17 , pp. 603-616
    • Hacquard, S.1
  • 3
    • 84931269119 scopus 로고    scopus 로고
    • Deciphering microbial community robustness through synthetic ecology and molecular systems synecology
    • Stenuit, B., Agathos, S.N., Deciphering microbial community robustness through synthetic ecology and molecular systems synecology. Curr. Opin. Biotechnol. 33 (2015), 305–317.
    • (2015) Curr. Opin. Biotechnol. , vol.33 , pp. 305-317
    • Stenuit, B.1    Agathos, S.N.2
  • 4
    • 85042945355 scopus 로고    scopus 로고
    • Metabolic division of labor in microbial systems
    • Tsoi, R., et al. Metabolic division of labor in microbial systems. Proc. Natl. Acad. Sci. U. S. A. 115 (2018), 2526–2531.
    • (2018) Proc. Natl. Acad. Sci. U. S. A. , vol.115 , pp. 2526-2531
    • Tsoi, R.1
  • 5
    • 33646032683 scopus 로고    scopus 로고
    • Bacterially speaking
    • Bassler, B.L., Losick, R., Bacterially speaking. Cell 125 (2006), 237–246.
    • (2006) Cell , vol.125 , pp. 237-246
    • Bassler, B.L.1    Losick, R.2
  • 6
    • 84960460639 scopus 로고    scopus 로고
    • Engineering cellular metabolism
    • Nielsen, J., Keasling, J.D., Engineering cellular metabolism. Cell 164 (2016), 1185–1197.
    • (2016) Cell , vol.164 , pp. 1185-1197
    • Nielsen, J.1    Keasling, J.D.2
  • 7
    • 84961223765 scopus 로고    scopus 로고
    • Metabolic burden: cornerstones in synthetic biology and metabolic engineering applications
    • Wu, G., et al. Metabolic burden: cornerstones in synthetic biology and metabolic engineering applications. Trends Biotechnol. 34 (2016), 652–664.
    • (2016) Trends Biotechnol. , vol.34 , pp. 652-664
    • Wu, G.1
  • 8
    • 33846936445 scopus 로고    scopus 로고
    • Synthetic cooperation in engineered yeast populations
    • Shou, W., et al. Synthetic cooperation in engineered yeast populations. Proc. Natl. Acad. Sci. U. S. A. 104 (2007), 1877–1882.
    • (2007) Proc. Natl. Acad. Sci. U. S. A. , vol.104 , pp. 1877-1882
    • Shou, W.1
  • 9
    • 79951803084 scopus 로고    scopus 로고
    • Self-organization, layered structure, and aggregation enhance persistence of a synthetic biofilm consortium
    • Brenner, K., Arnold, F.H., Self-organization, layered structure, and aggregation enhance persistence of a synthetic biofilm consortium. PLoS One 6 (2011), 1–7.
    • (2011) PLoS One , vol.6 , pp. 1-7
    • Brenner, K.1    Arnold, F.H.2
  • 10
    • 84893510429 scopus 로고    scopus 로고
    • Microbial consortia engineering for cellular factories: in vitro to in silico systems
    • Bernstein, H.C., Carlson, R.P., Microbial consortia engineering for cellular factories: in vitro to in silico systems. Comput. Struct. Biotechnol. J., 3, 2012, e201210017.
    • (2012) Comput. Struct. Biotechnol. J. , vol.3
    • Bernstein, H.C.1    Carlson, R.P.2
  • 11
    • 84859907317 scopus 로고    scopus 로고
    • A road map for the development of community systems (CoSy) biology
    • Zengler, K., Palsson, B.O., A road map for the development of community systems (CoSy) biology. Nat. Rev. Microbiol. 10 (2012), 366–372.
    • (2012) Nat. Rev. Microbiol. , vol.10 , pp. 366-372
    • Zengler, K.1    Palsson, B.O.2
  • 12
    • 84962855606 scopus 로고    scopus 로고
    • Principles for designing synthetic microbial communities
    • Johns, N.I., et al. Principles for designing synthetic microbial communities. Curr. Opin. Microbiol. 31 (2016), 146–153.
    • (2016) Curr. Opin. Microbiol. , vol.31 , pp. 146-153
    • Johns, N.I.1
  • 13
    • 77951107086 scopus 로고    scopus 로고
    • Synthetic biology: applications come of age
    • Khalil, A.S., Collins, J.J., Synthetic biology: applications come of age. Nat. Rev. Genet. 11 (2010), 367–379.
    • (2010) Nat. Rev. Genet. , vol.11 , pp. 367-379
    • Khalil, A.S.1    Collins, J.J.2
  • 14
    • 84974717567 scopus 로고    scopus 로고
    • CRISPR/Cas9 in genome editing and beyond
    • Wang, H., et al. CRISPR/Cas9 in genome editing and beyond. Annu. Rev. Biochem. 85 (2016), 227–264.
    • (2016) Annu. Rev. Biochem. , vol.85 , pp. 227-264
    • Wang, H.1
  • 15
    • 79951501719 scopus 로고    scopus 로고
    • DNA assembly for synthetic biology: from parts to pathways and beyond
    • Ellis, T., et al. DNA assembly for synthetic biology: from parts to pathways and beyond. Integr. Biol. 3 (2011), 109–118.
    • (2011) Integr. Biol. , vol.3 , pp. 109-118
    • Ellis, T.1
  • 16
    • 84899694320 scopus 로고    scopus 로고
    • Principles of genetic circuit design
    • Brophy, J.A.N., Voigt, C.A., Principles of genetic circuit design. Nat. Methods 11 (2014), 508–520.
    • (2014) Nat. Methods , vol.11 , pp. 508-520
    • Brophy, J.A.N.1    Voigt, C.A.2
  • 17
    • 79952102340 scopus 로고    scopus 로고
    • When microbial conversations get physical
    • Reguera, G., When microbial conversations get physical. Trends Microbiol. 19 (2011), 105–113.
    • (2011) Trends Microbiol. , vol.19 , pp. 105-113
    • Reguera, G.1
  • 18
    • 84946221763 scopus 로고    scopus 로고
    • Ion channels enable electrical communication in bacterial communities
    • Prindle, A., et al. Ion channels enable electrical communication in bacterial communities. Nature 527 (2015), 59–63.
    • (2015) Nature , vol.527 , pp. 59-63
    • Prindle, A.1
  • 19
    • 84944755142 scopus 로고    scopus 로고
    • Intercellular wiring enables electron transfer between methanotrophic archaea and bacteria
    • Wegener, G., et al. Intercellular wiring enables electron transfer between methanotrophic archaea and bacteria. Nature 526 (2015), 587–590.
    • (2015) Nature , vol.526 , pp. 587-590
    • Wegener, G.1
  • 20
    • 85047545905 scopus 로고    scopus 로고
    • Bacterial quorum sensing and microbial community interactions
    • Abisado, R.G., et al. Bacterial quorum sensing and microbial community interactions. mBio 9 (2018), 1–13.
    • (2018) mBio , vol.9 , pp. 1-13
    • Abisado, R.G.1
  • 21
    • 73349114916 scopus 로고    scopus 로고
    • Bacterial quorum-sensing network architectures
    • Ng, W.-L., Bassler, B.L., Bacterial quorum-sensing network architectures. Annu. Rev. Genet. 43 (2009), 197–222.
    • (2009) Annu. Rev. Genet. , vol.43 , pp. 197-222
    • Ng, W.-L.1    Bassler, B.L.2
  • 22
    • 84987917092 scopus 로고    scopus 로고
    • Quorum sensing communication modules for microbial consortia
    • Scott, S.R., Hasty, J., Quorum sensing communication modules for microbial consortia. ACS Synth. Biol. 5 (2016), 969–977.
    • (2016) ACS Synth. Biol. , vol.5 , pp. 969-977
    • Scott, S.R.1    Hasty, J.2
  • 23
    • 85049888453 scopus 로고    scopus 로고
    • Tools for engineering coordinated system behaviour in synthetic microbial consortia
    • Kylilis, N., et al. Tools for engineering coordinated system behaviour in synthetic microbial consortia. Nat. Commun., 9, 2018, 2677.
    • (2018) Nat. Commun. , vol.9
    • Kylilis, N.1
  • 24
    • 84884535420 scopus 로고    scopus 로고
    • Peptide-based communication system enables Escherichia coli to Bacillus megaterium interspecies signaling
    • Marchand, N., Collins, C.H., Peptide-based communication system enables Escherichia coli to Bacillus megaterium interspecies signaling. Biotechnol. Bioeng. 110 (2013), 3003–3012.
    • (2013) Biotechnol. Bioeng. , vol.110 , pp. 3003-3012
    • Marchand, N.1    Collins, C.H.2
  • 25
    • 28644440579 scopus 로고    scopus 로고
    • Artificial cell-cell communication in yeast Saccharomyces cerevisiae using signaling elements from Arabidopsis thaliana
    • Chen, M.T., Weiss, R., Artificial cell-cell communication in yeast Saccharomyces cerevisiae using signaling elements from Arabidopsis thaliana. Nat. Biotechnol. 23 (2005), 1551–1555.
    • (2005) Nat. Biotechnol. , vol.23 , pp. 1551-1555
    • Chen, M.T.1    Weiss, R.2
  • 26
    • 34547521789 scopus 로고    scopus 로고
    • Synthetic ecosystems based on airborne inter- and intrakingdom communication
    • Weber, W., et al. Synthetic ecosystems based on airborne inter- and intrakingdom communication. Proc. Natl. Acad. Sci. U. S. A. 104 (2007), 10435–10440.
    • (2007) Proc. Natl. Acad. Sci. U. S. A. , vol.104 , pp. 10435-10440
    • Weber, W.1
  • 27
    • 34648828365 scopus 로고    scopus 로고
    • Directed evolution of AraC for improved compatibility of arabinose- and lactose-inducible promoters
    • Lee, S.K., et al. Directed evolution of AraC for improved compatibility of arabinose- and lactose-inducible promoters. Appl. Environ. Microbiol. 73 (2007), 5711–5715.
    • (2007) Appl. Environ. Microbiol. , vol.73 , pp. 5711-5715
    • Lee, S.K.1
  • 28
    • 85043300053 scopus 로고    scopus 로고
    • A sigma factor toolbox for orthogonal gene expression in Escherichia coli
    • Bervoets, I., et al. A sigma factor toolbox for orthogonal gene expression in Escherichia coli. Nucleic Acids Res. 46 (2018), 2133–2144.
    • (2018) Nucleic Acids Res. , vol.46 , pp. 2133-2144
    • Bervoets, I.1
  • 29
    • 85048964823 scopus 로고    scopus 로고
    • Designing microbial consortia with defined social interactions
    • Kong, W., et al. Designing microbial consortia with defined social interactions. Nat. Chem. Biol. 14 (2018), 821–829.
    • (2018) Nat. Chem. Biol. , vol.14 , pp. 821-829
    • Kong, W.1
  • 30
    • 47649125318 scopus 로고    scopus 로고
    • Tuning gene expression to changing environments: from rapid responses to evolutionary adaptation
    • López-Maury, L., et al. Tuning gene expression to changing environments: from rapid responses to evolutionary adaptation. Nat. Rev. Genet. 9 (2008), 583–593.
    • (2008) Nat. Rev. Genet. , vol.9 , pp. 583-593
    • López-Maury, L.1
  • 31
    • 84929440325 scopus 로고    scopus 로고
    • Metabolic dependencies drive species co-occurrence in diverse microbial communities
    • Zelezniak, A., et al. Metabolic dependencies drive species co-occurrence in diverse microbial communities. Proc. Natl. Acad. Sci. U. S. A. 112 (2015), 6449–6454.
    • (2015) Proc. Natl. Acad. Sci. U. S. A. , vol.112 , pp. 6449-6454
    • Zelezniak, A.1
  • 32
    • 85044596056 scopus 로고    scopus 로고
    • The social network of microorganisms - how auxotrophies shape complex communities
    • Zengler, K., Zaramela, L.S., The social network of microorganisms - how auxotrophies shape complex communities. Nat. Rev. Microbiol. 16 (2018), 383–390.
    • (2018) Nat. Rev. Microbiol. , vol.16 , pp. 383-390
    • Zengler, K.1    Zaramela, L.S.2
  • 33
    • 85047625349 scopus 로고    scopus 로고
    • Ecology and evolution of metabolic cross-feeding interactions in bacteria
    • D'Souza, G., et al. Ecology and evolution of metabolic cross-feeding interactions in bacteria. Nat. Prod. Rep. 35 (2018), 455–488.
    • (2018) Nat. Prod. Rep. , vol.35 , pp. 455-488
    • D'Souza, G.1
  • 34
    • 84876026396 scopus 로고    scopus 로고
    • Microbial syntrophy: interaction for the common good
    • Morris, B.E.L., et al. Microbial syntrophy: interaction for the common good. FEMS Microbiol. Rev. 37 (2013), 384–406.
    • (2013) FEMS Microbiol. Rev. , vol.37 , pp. 384-406
    • Morris, B.E.L.1
  • 35
    • 84901049717 scopus 로고    scopus 로고
    • Syntrophic exchange in synthetic microbial communities
    • Mee, M.T., et al. Syntrophic exchange in synthetic microbial communities. Proc. Natl. Acad. Sci. U. S. A. 111 (2014), E2149–E2156.
    • (2014) Proc. Natl. Acad. Sci. U. S. A. , vol.111 , pp. E2149-E2156
    • Mee, M.T.1
  • 36
    • 77956415336 scopus 로고    scopus 로고
    • Emergent cooperation in microbial metabolism
    • Wintermute, E.H., Silver, P.A., Emergent cooperation in microbial metabolism. Mol. Syst. Biol. 6 (2010), 1–7.
    • (2010) Mol. Syst. Biol. , vol.6 , pp. 1-7
    • Wintermute, E.H.1    Silver, P.A.2
  • 37
    • 84949818974 scopus 로고    scopus 로고
    • Self-establishing communities enable cooperative metabolite exchange in a eukaryote
    • Campbell, K., et al. Self-establishing communities enable cooperative metabolite exchange in a eukaryote. eLife 4 (2015), 1–23.
    • (2015) eLife , vol.4 , pp. 1-23
    • Campbell, K.1
  • 38
    • 85056495148 scopus 로고    scopus 로고
    • Engineering yeast endosymbionts as a step toward the evolution of mitochondria
    • Mehta, A.P., et al. Engineering yeast endosymbionts as a step toward the evolution of mitochondria. Proc. Natl. Acad. Sci. U. S. A. 115 (2018), 11796–11801.
    • (2018) Proc. Natl. Acad. Sci. U. S. A. , vol.115 , pp. 11796-11801
    • Mehta, A.P.1
  • 39
    • 84941768761 scopus 로고    scopus 로고
    • An economic framework of microbial trade
    • Tasoff, J., et al. An economic framework of microbial trade. PLoS One 10 (2015), 1–20.
    • (2015) PLoS One , vol.10 , pp. 1-20
    • Tasoff, J.1
  • 40
    • 84912038851 scopus 로고    scopus 로고
    • How metabolites modulate metabolic flux
    • Wegner, A., et al. How metabolites modulate metabolic flux. Curr. Opin. Biotechnol. 34 (2015), 16–22.
    • (2015) Curr. Opin. Biotechnol. , vol.34 , pp. 16-22
    • Wegner, A.1
  • 41
    • 84940536381 scopus 로고    scopus 로고
    • Emergent genetic oscillations in a synthetic microbial consortium
    • Chen, Y., et al. Emergent genetic oscillations in a synthetic microbial consortium. Science 349 (2015), 986–989.
    • (2015) Science , vol.349 , pp. 986-989
    • Chen, Y.1
  • 42
    • 85020709607 scopus 로고    scopus 로고
    • A stabilized microbial ecosystem of self-limiting bacteria using synthetic quorum-regulated lysis
    • Scott, S.R., et al. A stabilized microbial ecosystem of self-limiting bacteria using synthetic quorum-regulated lysis. Nat. Microbiol. 2 (2017), 1–9.
    • (2017) Nat. Microbiol. , vol.2 , pp. 1-9
    • Scott, S.R.1
  • 43
    • 84983020502 scopus 로고    scopus 로고
    • Control theory meets synthetic biology
    • Del Vecchio, D., et al. Control theory meets synthetic biology. J. R. Soc. Interface, 13, 2016, 20160380.
    • (2016) J. R. Soc. Interface , vol.13
    • Del Vecchio, D.1
  • 44
    • 85018468764 scopus 로고    scopus 로고
    • In-silico analysis and implementation of a multicellular feedback control strategy in a synthetic bacterial consortium
    • Fiore, G., et al. In-silico analysis and implementation of a multicellular feedback control strategy in a synthetic bacterial consortium. ACS Synth. Biol. 6 (2017), 507–517.
    • (2017) ACS Synth. Biol. , vol.6 , pp. 507-517
    • Fiore, G.1
  • 45
    • 85057091724 scopus 로고    scopus 로고
    • Control of bacterial population density with population feedback and molecular sequestration
    • Published online November 25, 2017
    • McCardell, R.D., et al. Control of bacterial population density with population feedback and molecular sequestration. bioRxiv, 2017, 10.1101/225045 Published online November 25, 2017.
    • (2017) bioRxiv
    • McCardell, R.D.1
  • 46
    • 84867746452 scopus 로고    scopus 로고
    • Metabolic specialization and the assembly of microbial communities
    • Johnson, D.R., et al. Metabolic specialization and the assembly of microbial communities. ISME J. 6 (2012), 1985–1991.
    • (2012) ISME J. , vol.6 , pp. 1985-1991
    • Johnson, D.R.1
  • 47
    • 84926646130 scopus 로고    scopus 로고
    • Distributing a metabolic pathway among a microbial consortium enhances production of natural products
    • Zhou, K., et al. Distributing a metabolic pathway among a microbial consortium enhances production of natural products. Nat. Biotechnol. 33 (2015), 377–383.
    • (2015) Nat. Biotechnol. , vol.33 , pp. 377-383
    • Zhou, K.1
  • 48
    • 85008156860 scopus 로고    scopus 로고
    • Metabolic engineering of Escherichia coli for microbial synthesis of monolignols
    • Chen, Z., et al. Metabolic engineering of Escherichia coli for microbial synthesis of monolignols. Metab. Eng. 39 (2017), 102–109.
    • (2017) Metab. Eng. , vol.39 , pp. 102-109
    • Chen, Z.1
  • 49
    • 85042945355 scopus 로고    scopus 로고
    • Designing metabolic division of labor in microbial communities
    • Published online October 14, 2018
    • Thommes, M., et al. Designing metabolic division of labor in microbial communities. bioRxiv, 2018, 10.1073/pnas.1716888115 Published online October 14, 2018.
    • (2018) bioRxiv
    • Thommes, M.1
  • 50
    • 44949247292 scopus 로고    scopus 로고
    • Microbial production of plant benzylisoquinoline alkaloids
    • Minami, H., et al. Microbial production of plant benzylisoquinoline alkaloids. Proc. Natl. Acad. Sci. U. S. A. 105 (2008), 7393–7398.
    • (2008) Proc. Natl. Acad. Sci. U. S. A. , vol.105 , pp. 7393-7398
    • Minami, H.1
  • 51
    • 49949088247 scopus 로고    scopus 로고
    • Production of benzylisoquinoline alkaloids in Saccharomyces cerevisiae
    • Hawkins, K.M., Smolke, C.D., Production of benzylisoquinoline alkaloids in Saccharomyces cerevisiae. Nat. Chem. Biol. 4 (2008), 564–573.
    • (2008) Nat. Chem. Biol. , vol.4 , pp. 564-573
    • Hawkins, K.M.1    Smolke, C.D.2
  • 52
    • 84864416657 scopus 로고    scopus 로고
    • Multi-species biofilms: living with friendly neighbors
    • Elias, S., Banin, E., Multi-species biofilms: living with friendly neighbors. FEMS Microbiol. Rev. 36 (2012), 990–1004.
    • (2012) FEMS Microbiol. Rev. , vol.36 , pp. 990-1004
    • Elias, S.1    Banin, E.2
  • 53
    • 1842612577 scopus 로고    scopus 로고
    • Bacterial biofilms: from the natural environment to infectious diseases
    • Hall-Stoodley, L., et al. Bacterial biofilms: from the natural environment to infectious diseases. Nat. Rev. Microbiol. 2 (2004), 95–108.
    • (2004) Nat. Rev. Microbiol. , vol.2 , pp. 95-108
    • Hall-Stoodley, L.1
  • 54
    • 85053838005 scopus 로고    scopus 로고
    • A synthetic bacterial cell-cell adhesion toolbox for programming multicellular morphologies and patterns
    • Glass, D.S., Riedel-Kruse, I.H., A synthetic bacterial cell-cell adhesion toolbox for programming multicellular morphologies and patterns. Cell 174 (2018), 649–658.
    • (2018) Cell , vol.174 , pp. 649-658
    • Glass, D.S.1    Riedel-Kruse, I.H.2
  • 55
    • 85044870211 scopus 로고    scopus 로고
    • Biofilm lithography enables high-resolution cell patterning via optogenetic adhesin expression
    • Jin, X., Riedel-Kruse, I.H., Biofilm lithography enables high-resolution cell patterning via optogenetic adhesin expression. Proc. Natl. Acad. Sci. U. S. A. 115 (2018), 3698–3703.
    • (2018) Proc. Natl. Acad. Sci. U. S. A. , vol.115 , pp. 3698-3703
    • Jin, X.1    Riedel-Kruse, I.H.2
  • 56
    • 84861387333 scopus 로고    scopus 로고
    • Sticky situations: key components that control bacterial surface attachment
    • Petrova, O.E., Sauer, K., Sticky situations: key components that control bacterial surface attachment. J. Bacteriol. 194 (2012), 2413–2425.
    • (2012) J. Bacteriol. , vol.194 , pp. 2413-2425
    • Petrova, O.E.1    Sauer, K.2
  • 57
    • 0037154837 scopus 로고    scopus 로고
    • Extracellular DNA required for bacterial biofilm formation
    • Whitchurch, C.B., et al. Extracellular DNA required for bacterial biofilm formation. Science, 295, 2002, 1487.
    • (2002) Science , vol.295 , pp. 1487
    • Whitchurch, C.B.1
  • 58
    • 77958457228 scopus 로고    scopus 로고
    • A structurally tunable DNA-based extracellular matrix
    • Aldaye, F.A., et al. A structurally tunable DNA-based extracellular matrix. J. Am. Chem. Soc. 132 (2010), 14727–14729.
    • (2010) J. Am. Chem. Soc. , vol.132 , pp. 14727-14729
    • Aldaye, F.A.1
  • 59
    • 84903735259 scopus 로고    scopus 로고
    • Study of bacterial adhesion on different glycopolymer surfaces by quartz crystal microbalance with dissipation
    • Wang, Y., et al. Study of bacterial adhesion on different glycopolymer surfaces by quartz crystal microbalance with dissipation. Langmuir 30 (2014), 7377–7387.
    • (2014) Langmuir , vol.30 , pp. 7377-7387
    • Wang, Y.1
  • 60
    • 84904342003 scopus 로고    scopus 로고
    • Design of microbial consortia for industrial biotechnology
    • Höffner, K., Barton, P.I., Design of microbial consortia for industrial biotechnology. Comput. Aided Chem. Eng. 34 (2014), 65–74.
    • (2014) Comput. Aided Chem. Eng. , vol.34 , pp. 65-74
    • Höffner, K.1    Barton, P.I.2
  • 61
    • 84904965551 scopus 로고    scopus 로고
    • Diverse and divergent protein post-translational modifications in two growth stages of a natural microbial community
    • Li, Z., et al. Diverse and divergent protein post-translational modifications in two growth stages of a natural microbial community. Nat. Commun. 5 (2014), 1–11.
    • (2014) Nat. Commun. , vol.5 , pp. 1-11
    • Li, Z.1
  • 62
    • 84855246842 scopus 로고    scopus 로고
    • Synthetic Escherichia coli consortia engineered for syntrophy demonstrate enhanced biomass productivity
    • Bernstein, H.C., et al. Synthetic Escherichia coli consortia engineered for syntrophy demonstrate enhanced biomass productivity. J. Biotechnol. 157 (2012), 159–166.
    • (2012) J. Biotechnol. , vol.157 , pp. 159-166
    • Bernstein, H.C.1
  • 63
    • 84936803078 scopus 로고    scopus 로고
    • Engineering Escherichia coli coculture systems for the production of biochemical products
    • Zhang, H., et al. Engineering Escherichia coli coculture systems for the production of biochemical products. Proc. Natl. Acad. Sci. U. S. A. 112 (2015), 8266–8271.
    • (2015) Proc. Natl. Acad. Sci. U. S. A. , vol.112 , pp. 8266-8271
    • Zhang, H.1
  • 64
    • 33751120932 scopus 로고    scopus 로고
    • Production of isoprenoid pharmaceuticals by engineered microbes
    • Chang, M.C.Y., Keasling, J.D., Production of isoprenoid pharmaceuticals by engineered microbes. Nat. Chem. Biol. 2 (2006), 674–681.
    • (2006) Nat. Chem. Biol. , vol.2 , pp. 674-681
    • Chang, M.C.Y.1    Keasling, J.D.2
  • 65
    • 84989852376 scopus 로고    scopus 로고
    • Rewriting yeast central carbon metabolism for industrial isoprenoid production
    • Meadows, A.L., et al. Rewriting yeast central carbon metabolism for industrial isoprenoid production. Nature 537 (2016), 694–697.
    • (2016) Nature , vol.537 , pp. 694-697
    • Meadows, A.L.1
  • 66
    • 84880380223 scopus 로고    scopus 로고
    • CYP76AH1 catalyzes turnover of miltiradiene in tanshinones biosynthesis and enables heterologous production of ferruginol in yeasts
    • Guo, J., et al. CYP76AH1 catalyzes turnover of miltiradiene in tanshinones biosynthesis and enables heterologous production of ferruginol in yeasts. Proc. Natl. Acad. Sci. U. S. A. 110 (2013), 12108–12113.
    • (2013) Proc. Natl. Acad. Sci. U. S. A. , vol.110 , pp. 12108-12113
    • Guo, J.1
  • 67
    • 85021929291 scopus 로고    scopus 로고
    • Complete biosynthesis of anthocyanins using E. coli polycultures
    • Jones, J.A., et al. Complete biosynthesis of anthocyanins using E. coli polycultures. mBio 8 (2017), 1–9.
    • (2017) mBio , vol.8 , pp. 1-9
    • Jones, J.A.1
  • 68
    • 85037731688 scopus 로고    scopus 로고
    • Synthetic microbial consortia enable rapid assembly of pure translation machinery
    • Villarreal, F., et al. Synthetic microbial consortia enable rapid assembly of pure translation machinery. Nat. Chem. Biol. 14 (2018), 29–35.
    • (2018) Nat. Chem. Biol. , vol.14 , pp. 29-35
    • Villarreal, F.1
  • 69
    • 84971283675 scopus 로고    scopus 로고
    • Metabolic engineering for expanding the substrate range of Yarrowia lipolytica
    • Ledesma-Amaro, R., Nicaud, J.M., Metabolic engineering for expanding the substrate range of Yarrowia lipolytica. Trends Biotechnol. 34 (2016), 798–809.
    • (2016) Trends Biotechnol. , vol.34 , pp. 798-809
    • Ledesma-Amaro, R.1    Nicaud, J.M.2
  • 70
    • 84901769672 scopus 로고    scopus 로고
    • Metabolomic strategies for the identification of new enzyme functions and metabolic pathways
    • Prosser, G.A., et al. Metabolomic strategies for the identification of new enzyme functions and metabolic pathways. EMBO Rep. 15 (2014), 657–669.
    • (2014) EMBO Rep. , vol.15 , pp. 657-669
    • Prosser, G.A.1
  • 71
    • 84861969435 scopus 로고    scopus 로고
    • Simultaneous utilization of glucose, xylose and arabinose in the presence of acetate by a consortium of Escherichia coli strains
    • Xia, T., et al. Simultaneous utilization of glucose, xylose and arabinose in the presence of acetate by a consortium of Escherichia coli strains. Microb. Cell Fact., 11, 2012, 1.
    • (2012) Microb. Cell Fact. , vol.11 , pp. 1
    • Xia, T.1
  • 72
    • 84898053053 scopus 로고    scopus 로고
    • Engineering of yeast hexose transporters to transport D-xylose without inhibition by D-glucose
    • Farwick, A., et al. Engineering of yeast hexose transporters to transport D-xylose without inhibition by D-glucose. Proc. Natl. Acad. Sci. U. S. A. 111 (2014), 5159–5164.
    • (2014) Proc. Natl. Acad. Sci. U. S. A. , vol.111 , pp. 5159-5164
    • Farwick, A.1
  • 73
    • 85055076960 scopus 로고    scopus 로고
    • Fermentation of glucose-xylose-arabinose mixtures by a synthetic consortium of single-sugar-fermenting Saccharomyces cerevisiae strains
    • Verhoeven, M.D., et al. Fermentation of glucose-xylose-arabinose mixtures by a synthetic consortium of single-sugar-fermenting Saccharomyces cerevisiae strains. FEMS Yeast Res., 18(1 December), 2018, 10.1093/femsyr/foy075.
    • (2018) FEMS Yeast Res. , vol.18 , Issue.1 December
    • Verhoeven, M.D.1
  • 74
    • 85011056324 scopus 로고    scopus 로고
    • Synthetic photosynthetic consortia define interactions leading to robustness and photoproduction
    • Hays, S.G., et al. Synthetic photosynthetic consortia define interactions leading to robustness and photoproduction. J. Biol. Eng. 11 (2017), 1–14.
    • (2017) J. Biol. Eng. , vol.11 , pp. 1-14
    • Hays, S.G.1
  • 76
    • 84899477796 scopus 로고    scopus 로고
    • Synthesis and patterning of tunable multiscale materials with engineered cells
    • Chen, A.Y., et al. Synthesis and patterning of tunable multiscale materials with engineered cells. Nat. Mater. 13 (2014), 515–523.
    • (2014) Nat. Mater. , vol.13 , pp. 515-523
    • Chen, A.Y.1
  • 77
    • 85020894803 scopus 로고    scopus 로고
    • Extracellular self-assembly of functional and tunable protein conjugates from Bacillus subtilis
    • Gilbert, C., et al. Extracellular self-assembly of functional and tunable protein conjugates from Bacillus subtilis. ACS Synth. Biol. 6 (2017), 957–967.
    • (2017) ACS Synth. Biol. , vol.6 , pp. 957-967
    • Gilbert, C.1
  • 78
    • 84865156886 scopus 로고    scopus 로고
    • Self-surface assembly of cellulosomes with two miniscaffoldins on Saccharomyces cerevisiae for cellulosic ethanol production
    • Fan, L.-H., et al. Self-surface assembly of cellulosomes with two miniscaffoldins on Saccharomyces cerevisiae for cellulosic ethanol production. Proc. Natl. Acad. Sci. U. S. A. 109 (2012), 13260–13265.
    • (2012) Proc. Natl. Acad. Sci. U. S. A. , vol.109 , pp. 13260-13265
    • Fan, L.-H.1
  • 79
    • 84929512453 scopus 로고    scopus 로고
    • Sequencing and beyond: integrating molecular “omics” for microbial community profiling
    • Franzosa, E.A., et al. Sequencing and beyond: integrating molecular “omics” for microbial community profiling. Nat. Rev. Microbiol. 13 (2015), 360–372.
    • (2015) Nat. Rev. Microbiol. , vol.13 , pp. 360-372
    • Franzosa, E.A.1
  • 80
    • 85045428868 scopus 로고    scopus 로고
    • Structure and co-occurrence patterns in microbial communities under acute environmental stress reveal ecological factors fostering resilience
    • Mandakovic, D., et al. Structure and co-occurrence patterns in microbial communities under acute environmental stress reveal ecological factors fostering resilience. Sci. Rep. 8 (2018), 1–12.
    • (2018) Sci. Rep. , vol.8 , pp. 1-12
    • Mandakovic, D.1
  • 81
    • 85044589051 scopus 로고    scopus 로고
    • CRISPR-based genomic tools for the manipulation of genetically intractable microorganisms
    • Shapiro, R.S., et al. CRISPR-based genomic tools for the manipulation of genetically intractable microorganisms. Nat. Rev. Microbiol. 16 (2018), 333–339.
    • (2018) Nat. Rev. Microbiol. , vol.16 , pp. 333-339
    • Shapiro, R.S.1
  • 82
    • 84958247886 scopus 로고    scopus 로고
    • Synthetic biology to access and expand nature's chemical diversity
    • Smanski, M.J., et al. Synthetic biology to access and expand nature's chemical diversity. Nat. Rev. Microbiol. 14 (2016), 135–149.
    • (2016) Nat. Rev. Microbiol. , vol.14 , pp. 135-149
    • Smanski, M.J.1
  • 83
    • 84983319518 scopus 로고    scopus 로고
    • A synthetic multicellular memory device
    • Urrios, A., et al. A synthetic multicellular memory device. ACS Synth. Biol. 5 (2016), 862–873.
    • (2016) ACS Synth. Biol. , vol.5 , pp. 862-873
    • Urrios, A.1
  • 84
    • 84959572927 scopus 로고    scopus 로고
    • Implementation of complex biological logic circuits using spatially distributed multicellular consortia
    • Macia, J., et al. Implementation of complex biological logic circuits using spatially distributed multicellular consortia. PLoS Comput. Biol. 12 (2016), 1–24.
    • (2016) PLoS Comput. Biol. , vol.12 , pp. 1-24
    • Macia, J.1
  • 85
    • 85043507024 scopus 로고    scopus 로고
    • Engineering bacteria for diagnostic and therapeutic applications
    • Riglar, D.T., Silver, P.A., Engineering bacteria for diagnostic and therapeutic applications. Nat. Rev. Microbiol. 16 (2018), 214–225.
    • (2018) Nat. Rev. Microbiol. , vol.16 , pp. 214-225
    • Riglar, D.T.1    Silver, P.A.2
  • 86
    • 85053084082 scopus 로고    scopus 로고
    • Development of a synthetic live bacterial therapeutic for the human metabolic disease phenylketonuria
    • Isabella, V.M., et al. Development of a synthetic live bacterial therapeutic for the human metabolic disease phenylketonuria. Nat. Biotechnol. 36 (2018), 857–864.
    • (2018) Nat. Biotechnol. , vol.36 , pp. 857-864
    • Isabella, V.M.1
  • 87
    • 85017396256 scopus 로고    scopus 로고
    • Engineered probiotic Escherichia coli can eliminate and prevent Pseudomonas aeruginosa gut infection in animal models
    • Hwang, I.Y., et al. Engineered probiotic Escherichia coli can eliminate and prevent Pseudomonas aeruginosa gut infection in animal models. Nat. Commun. 8 (2017), 1–11.
    • (2017) Nat. Commun. , vol.8 , pp. 1-11
    • Hwang, I.Y.1
  • 88
    • 85057072098 scopus 로고    scopus 로고
    • Inducible cooperation in a synthetic gut bacterial consortium introduces population balance and stability
    • Published online September 25, 2018
    • Ziesack, M., et al. Inducible cooperation in a synthetic gut bacterial consortium introduces population balance and stability. bioRxiv, 2018, 10.1101/426171 Published online September 25, 2018.
    • (2018) bioRxiv
    • Ziesack, M.1
  • 89
    • 84863920287 scopus 로고    scopus 로고
    • Microbial interactions: from networks to models
    • Faust, K., Raes, J., Microbial interactions: from networks to models. Nat. Rev. Microbiol. 10 (2012), 538–550.
    • (2012) Nat. Rev. Microbiol. , vol.10 , pp. 538-550
    • Faust, K.1    Raes, J.2
  • 90
    • 84875883112 scopus 로고    scopus 로고
    • Fundamentals of microbial community resistance and resilience
    • Shade, A., et al. Fundamentals of microbial community resistance and resilience. Front. Microbiol. 3 (2012), 1–19.
    • (2012) Front. Microbiol. , vol.3 , pp. 1-19
    • Shade, A.1
  • 91
    • 85051972293 scopus 로고    scopus 로고
    • Metabolic interactions between dynamic bacterial subpopulations
    • Rosenthal, A.Z., et al. Metabolic interactions between dynamic bacterial subpopulations. eLife 7 (2018), 1–18.
    • (2018) eLife , vol.7 , pp. 1-18
    • Rosenthal, A.Z.1
  • 92
    • 0035955371 scopus 로고    scopus 로고
    • Biodiversity and ecosystem functioning: current knowledge and future challenges
    • Loreau, M., et al. Biodiversity and ecosystem functioning: current knowledge and future challenges. Science 294 (2001), 804–808.
    • (2001) Science , vol.294 , pp. 804-808
    • Loreau, M.1
  • 93
    • 42149089190 scopus 로고    scopus 로고
    • A synthetic Escherichia coli predator-prey ecosystem
    • Balagaddé F.K., et al. A synthetic Escherichia coli predator-prey ecosystem. Mol. Syst. Biol. 4 (2008), 1–8.
    • (2008) Mol. Syst. Biol. , vol.4 , pp. 1-8
    • Balagaddé, F.K.1
  • 94
    • 77956280046 scopus 로고    scopus 로고
    • An environment-sensitive synthetic microbial ecosystem
    • Hu, B., et al. An environment-sensitive synthetic microbial ecosystem. PLoS One 5 (2010), 1–9.
    • (2010) PLoS One , vol.5 , pp. 1-9
    • Hu, B.1
  • 95
    • 84960382191 scopus 로고    scopus 로고
    • Engineering microbial consortia for controllable outputs
    • Lindemann, S.R., et al. Engineering microbial consortia for controllable outputs. ISME J. 10 (2016), 2077–2084.
    • (2016) ISME J. , vol.10 , pp. 2077-2084
    • Lindemann, S.R.1
  • 96
    • 84865759667 scopus 로고    scopus 로고
    • Engineering ecosystems and synthetic ecologies
    • Mee, M.T., Wang, H.H., Engineering ecosystems and synthetic ecologies. Mol. Biosyst. 8 (2012), 2470–2483.
    • (2012) Mol. Biosyst. , vol.8 , pp. 2470-2483
    • Mee, M.T.1    Wang, H.H.2
  • 97
    • 84892708007 scopus 로고    scopus 로고
    • Ecological modeling from time-series inference: insight into dynamics and stability of intestinal microbiota
    • Stein, R.R., et al. Ecological modeling from time-series inference: insight into dynamics and stability of intestinal microbiota. PLoS Comput. Biol. 9 (2013), 31–36.
    • (2013) PLoS Comput. Biol. , vol.9 , pp. 31-36
    • Stein, R.R.1
  • 98
    • 84907692666 scopus 로고    scopus 로고
    • Dynamic flux balance analysis for synthetic microbial communities
    • Henson, M.A., Hanly, T.J., Dynamic flux balance analysis for synthetic microbial communities. IET Syst. Biol. 8 (2014), 214–229.
    • (2014) IET Syst. Biol. , vol.8 , pp. 214-229
    • Henson, M.A.1    Hanly, T.J.2
  • 99
    • 77749320898 scopus 로고    scopus 로고
    • What is flux balance analysis?
    • Orth, J.D., et al. What is flux balance analysis?. Nat. Biotechnol. 28 (2010), 245–248.
    • (2010) Nat. Biotechnol. , vol.28 , pp. 245-248
    • Orth, J.D.1
  • 100
    • 85057094050 scopus 로고    scopus 로고
    • In silico approaches to study mass and energy flows in microbial consortia: a syntrophic case study
    • Taffs, R., et al. In silico approaches to study mass and energy flows in microbial consortia: a syntrophic case study. BMC Syst. Biol. 3 (2009), 1–16.
    • (2009) BMC Syst. Biol. , vol.3 , pp. 1-16
    • Taffs, R.1
  • 101
    • 85031907995 scopus 로고    scopus 로고
    • BSim 2.0: an advanced agent-based cell simulator
    • Matyjaszkiewicz, A., et al. BSim 2.0: an advanced agent-based cell simulator. ACS Synth. Biol. 6 (2017), 1969–1972.
    • (2017) ACS Synth. Biol. , vol.6 , pp. 1969-1972
    • Matyjaszkiewicz, A.1
  • 102
    • 85027548145 scopus 로고    scopus 로고
    • A new improved and extended version of the multicell bacterial simulator gro
    • Gutiérrez, M., et al. A new improved and extended version of the multicell bacterial simulator gro. ACS Synth. Biol. 6 (2017), 1496–1508.
    • (2017) ACS Synth. Biol. , vol.6 , pp. 1496-1508
    • Gutiérrez, M.1
  • 103
    • 84883326386 scopus 로고    scopus 로고
    • Design and characterization of synthetic fungal-bacterial consortia for direct production of isobutanol from cellulosic biomass
    • Minty, J.J., et al. Design and characterization of synthetic fungal-bacterial consortia for direct production of isobutanol from cellulosic biomass. Proc. Natl. Acad. Sci. U. S. A. 110 (2013), 14592–14597.
    • (2013) Proc. Natl. Acad. Sci. U. S. A. , vol.110 , pp. 14592-14597
    • Minty, J.J.1
  • 104
    • 0037363293 scopus 로고    scopus 로고
    • A constructed microbial consortium for biodegradation of the organophosphorus insecticide parathion
    • Gilbert, E.S., et al. A constructed microbial consortium for biodegradation of the organophosphorus insecticide parathion. Appl. Microbiol. Biotechnol. 61 (2003), 77–81.
    • (2003) Appl. Microbiol. Biotechnol. , vol.61 , pp. 77-81
    • Gilbert, E.S.1
  • 105
    • 84055200869 scopus 로고    scopus 로고
    • Synthesis of three advanced biofuels from ionic liquid-pretreated switchgrass using engineered Escherichia coli
    • Bokinsky, G., et al. Synthesis of three advanced biofuels from ionic liquid-pretreated switchgrass using engineered Escherichia coli. Proc. Natl. Acad. Sci. U. S. A. 108 (2011), 19949–19954.
    • (2011) Proc. Natl. Acad. Sci. U. S. A. , vol.108 , pp. 19949-19954
    • Bokinsky, G.1
  • 106
    • 78649713858 scopus 로고    scopus 로고
    • Surface display of a functional minicellulosome by intracellular complementation using a synthetic yeast consortium and its application to cellulose hydrolysis and ethanol production
    • Tsai, S.L., et al. Surface display of a functional minicellulosome by intracellular complementation using a synthetic yeast consortium and its application to cellulose hydrolysis and ethanol production. Appl. Environ. Microbiol. 76 (2010), 7514–7520.
    • (2010) Appl. Environ. Microbiol. , vol.76 , pp. 7514-7520
    • Tsai, S.L.1
  • 107
    • 70149113922 scopus 로고    scopus 로고
    • Synthesis of methyl halides from biomass using engineered microbes
    • Bayer, T.S., et al. Synthesis of methyl halides from biomass using engineered microbes. J. Am. Chem. Soc. 131 (2009), 6508–6515.
    • (2009) J. Am. Chem. Soc. , vol.131 , pp. 6508-6515
    • Bayer, T.S.1
  • 108
    • 84959086912 scopus 로고    scopus 로고
    • Reorganization of a synthetic microbial consortium for one-step vitamin C fermentation
    • Wang, E.X., et al. Reorganization of a synthetic microbial consortium for one-step vitamin C fermentation. Microb. Cell Fact. 15 (2016), 1–11.
    • (2016) Microb. Cell Fact. , vol.15 , pp. 1-11
    • Wang, E.X.1
  • 109
    • 84863011639 scopus 로고    scopus 로고
    • Synthetic quorum-sensing circuit to control consortial biofilm formation and dispersal in a microfluidic device
    • Hong, S.H., et al. Synthetic quorum-sensing circuit to control consortial biofilm formation and dispersal in a microfluidic device. Nat. Commun., 3, 2012, 613.
    • (2012) Nat. Commun. , vol.3 , pp. 613
    • Hong, S.H.1
  • 110
    • 78651406505 scopus 로고    scopus 로고
    • Distributed biological computation with multicellular engineered networks
    • Regot, S., et al. Distributed biological computation with multicellular engineered networks. Nature 469 (2011), 207–211.
    • (2011) Nature , vol.469 , pp. 207-211
    • Regot, S.1
  • 111
    • 78651397316 scopus 로고    scopus 로고
    • Robust multicellular computing using genetically encoded NOR gates and chemical “wires”
    • Tamsir, A., et al. Robust multicellular computing using genetically encoded NOR gates and chemical “wires”. Nature 469 (2011), 212–215.
    • (2011) Nature , vol.469 , pp. 212-215
    • Tamsir, A.1
  • 112
    • 85042552153 scopus 로고    scopus 로고
    • Programmed hierarchical patterning of bacterial populations
    • Boehm, C.R., et al. Programmed hierarchical patterning of bacterial populations. Nat. Commun., 9, 2018, 776.
    • (2018) Nat. Commun. , vol.9 , pp. 776
    • Boehm, C.R.1
  • 113
    • 17844374314 scopus 로고    scopus 로고
    • A synthetic multicellular system for programmed pattern formation
    • Basu, S., et al. A synthetic multicellular system for programmed pattern formation. Nature 434 (2005), 1130–1134.
    • (2005) Nature , vol.434 , pp. 1130-1134
    • Basu, S.1
  • 114
    • 85020680103 scopus 로고    scopus 로고
    • Naringenin-responsive riboswitch-based fluorescent biosensor module for Escherichia coli co-cultures
    • Xiu, Y., et al. Naringenin-responsive riboswitch-based fluorescent biosensor module for Escherichia coli co-cultures. Biotechnol. Bioeng. 114 (2017), 2235–2244.
    • (2017) Biotechnol. Bioeng. , vol.114 , pp. 2235-2244
    • Xiu, Y.1
  • 115
    • 84937923660 scopus 로고    scopus 로고
    • Optimization of a whole-cell biocatalyst by employing genetically encoded product sensors inside nanolitre reactors
    • Meyer, A., et al. Optimization of a whole-cell biocatalyst by employing genetically encoded product sensors inside nanolitre reactors. Nat. Chem. 7 (2015), 673–678.
    • (2015) Nat. Chem. , vol.7 , pp. 673-678
    • Meyer, A.1


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