-
1
-
-
49049105130
-
Engineering microbial consortia: a new frontier in synthetic biology
-
Brenner, K., et al. Engineering microbial consortia: a new frontier in synthetic biology. Trends Biotechnol. 26 (2008), 483–489.
-
(2008)
Trends Biotechnol.
, vol.26
, pp. 483-489
-
-
Brenner, K.1
-
2
-
-
84929298149
-
Microbiota and host nutrition across plant and animal kingdoms
-
Hacquard, S., et al. Microbiota and host nutrition across plant and animal kingdoms. Cell Host Microbe 17 (2015), 603–616.
-
(2015)
Cell Host Microbe
, vol.17
, pp. 603-616
-
-
Hacquard, S.1
-
3
-
-
84931269119
-
Deciphering microbial community robustness through synthetic ecology and molecular systems synecology
-
Stenuit, B., Agathos, S.N., Deciphering microbial community robustness through synthetic ecology and molecular systems synecology. Curr. Opin. Biotechnol. 33 (2015), 305–317.
-
(2015)
Curr. Opin. Biotechnol.
, vol.33
, pp. 305-317
-
-
Stenuit, B.1
Agathos, S.N.2
-
4
-
-
85042945355
-
Metabolic division of labor in microbial systems
-
Tsoi, R., et al. Metabolic division of labor in microbial systems. Proc. Natl. Acad. Sci. U. S. A. 115 (2018), 2526–2531.
-
(2018)
Proc. Natl. Acad. Sci. U. S. A.
, vol.115
, pp. 2526-2531
-
-
Tsoi, R.1
-
5
-
-
33646032683
-
Bacterially speaking
-
Bassler, B.L., Losick, R., Bacterially speaking. Cell 125 (2006), 237–246.
-
(2006)
Cell
, vol.125
, pp. 237-246
-
-
Bassler, B.L.1
Losick, R.2
-
6
-
-
84960460639
-
Engineering cellular metabolism
-
Nielsen, J., Keasling, J.D., Engineering cellular metabolism. Cell 164 (2016), 1185–1197.
-
(2016)
Cell
, vol.164
, pp. 1185-1197
-
-
Nielsen, J.1
Keasling, J.D.2
-
7
-
-
84961223765
-
Metabolic burden: cornerstones in synthetic biology and metabolic engineering applications
-
Wu, G., et al. Metabolic burden: cornerstones in synthetic biology and metabolic engineering applications. Trends Biotechnol. 34 (2016), 652–664.
-
(2016)
Trends Biotechnol.
, vol.34
, pp. 652-664
-
-
Wu, G.1
-
8
-
-
33846936445
-
Synthetic cooperation in engineered yeast populations
-
Shou, W., et al. Synthetic cooperation in engineered yeast populations. Proc. Natl. Acad. Sci. U. S. A. 104 (2007), 1877–1882.
-
(2007)
Proc. Natl. Acad. Sci. U. S. A.
, vol.104
, pp. 1877-1882
-
-
Shou, W.1
-
9
-
-
79951803084
-
Self-organization, layered structure, and aggregation enhance persistence of a synthetic biofilm consortium
-
Brenner, K., Arnold, F.H., Self-organization, layered structure, and aggregation enhance persistence of a synthetic biofilm consortium. PLoS One 6 (2011), 1–7.
-
(2011)
PLoS One
, vol.6
, pp. 1-7
-
-
Brenner, K.1
Arnold, F.H.2
-
10
-
-
84893510429
-
Microbial consortia engineering for cellular factories: in vitro to in silico systems
-
Bernstein, H.C., Carlson, R.P., Microbial consortia engineering for cellular factories: in vitro to in silico systems. Comput. Struct. Biotechnol. J., 3, 2012, e201210017.
-
(2012)
Comput. Struct. Biotechnol. J.
, vol.3
-
-
Bernstein, H.C.1
Carlson, R.P.2
-
11
-
-
84859907317
-
A road map for the development of community systems (CoSy) biology
-
Zengler, K., Palsson, B.O., A road map for the development of community systems (CoSy) biology. Nat. Rev. Microbiol. 10 (2012), 366–372.
-
(2012)
Nat. Rev. Microbiol.
, vol.10
, pp. 366-372
-
-
Zengler, K.1
Palsson, B.O.2
-
12
-
-
84962855606
-
Principles for designing synthetic microbial communities
-
Johns, N.I., et al. Principles for designing synthetic microbial communities. Curr. Opin. Microbiol. 31 (2016), 146–153.
-
(2016)
Curr. Opin. Microbiol.
, vol.31
, pp. 146-153
-
-
Johns, N.I.1
-
13
-
-
77951107086
-
Synthetic biology: applications come of age
-
Khalil, A.S., Collins, J.J., Synthetic biology: applications come of age. Nat. Rev. Genet. 11 (2010), 367–379.
-
(2010)
Nat. Rev. Genet.
, vol.11
, pp. 367-379
-
-
Khalil, A.S.1
Collins, J.J.2
-
14
-
-
84974717567
-
CRISPR/Cas9 in genome editing and beyond
-
Wang, H., et al. CRISPR/Cas9 in genome editing and beyond. Annu. Rev. Biochem. 85 (2016), 227–264.
-
(2016)
Annu. Rev. Biochem.
, vol.85
, pp. 227-264
-
-
Wang, H.1
-
15
-
-
79951501719
-
DNA assembly for synthetic biology: from parts to pathways and beyond
-
Ellis, T., et al. DNA assembly for synthetic biology: from parts to pathways and beyond. Integr. Biol. 3 (2011), 109–118.
-
(2011)
Integr. Biol.
, vol.3
, pp. 109-118
-
-
Ellis, T.1
-
16
-
-
84899694320
-
Principles of genetic circuit design
-
Brophy, J.A.N., Voigt, C.A., Principles of genetic circuit design. Nat. Methods 11 (2014), 508–520.
-
(2014)
Nat. Methods
, vol.11
, pp. 508-520
-
-
Brophy, J.A.N.1
Voigt, C.A.2
-
17
-
-
79952102340
-
When microbial conversations get physical
-
Reguera, G., When microbial conversations get physical. Trends Microbiol. 19 (2011), 105–113.
-
(2011)
Trends Microbiol.
, vol.19
, pp. 105-113
-
-
Reguera, G.1
-
18
-
-
84946221763
-
Ion channels enable electrical communication in bacterial communities
-
Prindle, A., et al. Ion channels enable electrical communication in bacterial communities. Nature 527 (2015), 59–63.
-
(2015)
Nature
, vol.527
, pp. 59-63
-
-
Prindle, A.1
-
19
-
-
84944755142
-
Intercellular wiring enables electron transfer between methanotrophic archaea and bacteria
-
Wegener, G., et al. Intercellular wiring enables electron transfer between methanotrophic archaea and bacteria. Nature 526 (2015), 587–590.
-
(2015)
Nature
, vol.526
, pp. 587-590
-
-
Wegener, G.1
-
20
-
-
85047545905
-
Bacterial quorum sensing and microbial community interactions
-
Abisado, R.G., et al. Bacterial quorum sensing and microbial community interactions. mBio 9 (2018), 1–13.
-
(2018)
mBio
, vol.9
, pp. 1-13
-
-
Abisado, R.G.1
-
21
-
-
73349114916
-
Bacterial quorum-sensing network architectures
-
Ng, W.-L., Bassler, B.L., Bacterial quorum-sensing network architectures. Annu. Rev. Genet. 43 (2009), 197–222.
-
(2009)
Annu. Rev. Genet.
, vol.43
, pp. 197-222
-
-
Ng, W.-L.1
Bassler, B.L.2
-
22
-
-
84987917092
-
Quorum sensing communication modules for microbial consortia
-
Scott, S.R., Hasty, J., Quorum sensing communication modules for microbial consortia. ACS Synth. Biol. 5 (2016), 969–977.
-
(2016)
ACS Synth. Biol.
, vol.5
, pp. 969-977
-
-
Scott, S.R.1
Hasty, J.2
-
23
-
-
85049888453
-
Tools for engineering coordinated system behaviour in synthetic microbial consortia
-
Kylilis, N., et al. Tools for engineering coordinated system behaviour in synthetic microbial consortia. Nat. Commun., 9, 2018, 2677.
-
(2018)
Nat. Commun.
, vol.9
-
-
Kylilis, N.1
-
24
-
-
84884535420
-
Peptide-based communication system enables Escherichia coli to Bacillus megaterium interspecies signaling
-
Marchand, N., Collins, C.H., Peptide-based communication system enables Escherichia coli to Bacillus megaterium interspecies signaling. Biotechnol. Bioeng. 110 (2013), 3003–3012.
-
(2013)
Biotechnol. Bioeng.
, vol.110
, pp. 3003-3012
-
-
Marchand, N.1
Collins, C.H.2
-
25
-
-
28644440579
-
Artificial cell-cell communication in yeast Saccharomyces cerevisiae using signaling elements from Arabidopsis thaliana
-
Chen, M.T., Weiss, R., Artificial cell-cell communication in yeast Saccharomyces cerevisiae using signaling elements from Arabidopsis thaliana. Nat. Biotechnol. 23 (2005), 1551–1555.
-
(2005)
Nat. Biotechnol.
, vol.23
, pp. 1551-1555
-
-
Chen, M.T.1
Weiss, R.2
-
26
-
-
34547521789
-
Synthetic ecosystems based on airborne inter- and intrakingdom communication
-
Weber, W., et al. Synthetic ecosystems based on airborne inter- and intrakingdom communication. Proc. Natl. Acad. Sci. U. S. A. 104 (2007), 10435–10440.
-
(2007)
Proc. Natl. Acad. Sci. U. S. A.
, vol.104
, pp. 10435-10440
-
-
Weber, W.1
-
27
-
-
34648828365
-
Directed evolution of AraC for improved compatibility of arabinose- and lactose-inducible promoters
-
Lee, S.K., et al. Directed evolution of AraC for improved compatibility of arabinose- and lactose-inducible promoters. Appl. Environ. Microbiol. 73 (2007), 5711–5715.
-
(2007)
Appl. Environ. Microbiol.
, vol.73
, pp. 5711-5715
-
-
Lee, S.K.1
-
28
-
-
85043300053
-
A sigma factor toolbox for orthogonal gene expression in Escherichia coli
-
Bervoets, I., et al. A sigma factor toolbox for orthogonal gene expression in Escherichia coli. Nucleic Acids Res. 46 (2018), 2133–2144.
-
(2018)
Nucleic Acids Res.
, vol.46
, pp. 2133-2144
-
-
Bervoets, I.1
-
29
-
-
85048964823
-
Designing microbial consortia with defined social interactions
-
Kong, W., et al. Designing microbial consortia with defined social interactions. Nat. Chem. Biol. 14 (2018), 821–829.
-
(2018)
Nat. Chem. Biol.
, vol.14
, pp. 821-829
-
-
Kong, W.1
-
30
-
-
47649125318
-
Tuning gene expression to changing environments: from rapid responses to evolutionary adaptation
-
López-Maury, L., et al. Tuning gene expression to changing environments: from rapid responses to evolutionary adaptation. Nat. Rev. Genet. 9 (2008), 583–593.
-
(2008)
Nat. Rev. Genet.
, vol.9
, pp. 583-593
-
-
López-Maury, L.1
-
31
-
-
84929440325
-
Metabolic dependencies drive species co-occurrence in diverse microbial communities
-
Zelezniak, A., et al. Metabolic dependencies drive species co-occurrence in diverse microbial communities. Proc. Natl. Acad. Sci. U. S. A. 112 (2015), 6449–6454.
-
(2015)
Proc. Natl. Acad. Sci. U. S. A.
, vol.112
, pp. 6449-6454
-
-
Zelezniak, A.1
-
32
-
-
85044596056
-
The social network of microorganisms - how auxotrophies shape complex communities
-
Zengler, K., Zaramela, L.S., The social network of microorganisms - how auxotrophies shape complex communities. Nat. Rev. Microbiol. 16 (2018), 383–390.
-
(2018)
Nat. Rev. Microbiol.
, vol.16
, pp. 383-390
-
-
Zengler, K.1
Zaramela, L.S.2
-
33
-
-
85047625349
-
Ecology and evolution of metabolic cross-feeding interactions in bacteria
-
D'Souza, G., et al. Ecology and evolution of metabolic cross-feeding interactions in bacteria. Nat. Prod. Rep. 35 (2018), 455–488.
-
(2018)
Nat. Prod. Rep.
, vol.35
, pp. 455-488
-
-
D'Souza, G.1
-
34
-
-
84876026396
-
Microbial syntrophy: interaction for the common good
-
Morris, B.E.L., et al. Microbial syntrophy: interaction for the common good. FEMS Microbiol. Rev. 37 (2013), 384–406.
-
(2013)
FEMS Microbiol. Rev.
, vol.37
, pp. 384-406
-
-
Morris, B.E.L.1
-
35
-
-
84901049717
-
Syntrophic exchange in synthetic microbial communities
-
Mee, M.T., et al. Syntrophic exchange in synthetic microbial communities. Proc. Natl. Acad. Sci. U. S. A. 111 (2014), E2149–E2156.
-
(2014)
Proc. Natl. Acad. Sci. U. S. A.
, vol.111
, pp. E2149-E2156
-
-
Mee, M.T.1
-
36
-
-
77956415336
-
Emergent cooperation in microbial metabolism
-
Wintermute, E.H., Silver, P.A., Emergent cooperation in microbial metabolism. Mol. Syst. Biol. 6 (2010), 1–7.
-
(2010)
Mol. Syst. Biol.
, vol.6
, pp. 1-7
-
-
Wintermute, E.H.1
Silver, P.A.2
-
37
-
-
84949818974
-
Self-establishing communities enable cooperative metabolite exchange in a eukaryote
-
Campbell, K., et al. Self-establishing communities enable cooperative metabolite exchange in a eukaryote. eLife 4 (2015), 1–23.
-
(2015)
eLife
, vol.4
, pp. 1-23
-
-
Campbell, K.1
-
38
-
-
85056495148
-
Engineering yeast endosymbionts as a step toward the evolution of mitochondria
-
Mehta, A.P., et al. Engineering yeast endosymbionts as a step toward the evolution of mitochondria. Proc. Natl. Acad. Sci. U. S. A. 115 (2018), 11796–11801.
-
(2018)
Proc. Natl. Acad. Sci. U. S. A.
, vol.115
, pp. 11796-11801
-
-
Mehta, A.P.1
-
39
-
-
84941768761
-
An economic framework of microbial trade
-
Tasoff, J., et al. An economic framework of microbial trade. PLoS One 10 (2015), 1–20.
-
(2015)
PLoS One
, vol.10
, pp. 1-20
-
-
Tasoff, J.1
-
40
-
-
84912038851
-
How metabolites modulate metabolic flux
-
Wegner, A., et al. How metabolites modulate metabolic flux. Curr. Opin. Biotechnol. 34 (2015), 16–22.
-
(2015)
Curr. Opin. Biotechnol.
, vol.34
, pp. 16-22
-
-
Wegner, A.1
-
41
-
-
84940536381
-
Emergent genetic oscillations in a synthetic microbial consortium
-
Chen, Y., et al. Emergent genetic oscillations in a synthetic microbial consortium. Science 349 (2015), 986–989.
-
(2015)
Science
, vol.349
, pp. 986-989
-
-
Chen, Y.1
-
42
-
-
85020709607
-
A stabilized microbial ecosystem of self-limiting bacteria using synthetic quorum-regulated lysis
-
Scott, S.R., et al. A stabilized microbial ecosystem of self-limiting bacteria using synthetic quorum-regulated lysis. Nat. Microbiol. 2 (2017), 1–9.
-
(2017)
Nat. Microbiol.
, vol.2
, pp. 1-9
-
-
Scott, S.R.1
-
43
-
-
84983020502
-
Control theory meets synthetic biology
-
Del Vecchio, D., et al. Control theory meets synthetic biology. J. R. Soc. Interface, 13, 2016, 20160380.
-
(2016)
J. R. Soc. Interface
, vol.13
-
-
Del Vecchio, D.1
-
44
-
-
85018468764
-
In-silico analysis and implementation of a multicellular feedback control strategy in a synthetic bacterial consortium
-
Fiore, G., et al. In-silico analysis and implementation of a multicellular feedback control strategy in a synthetic bacterial consortium. ACS Synth. Biol. 6 (2017), 507–517.
-
(2017)
ACS Synth. Biol.
, vol.6
, pp. 507-517
-
-
Fiore, G.1
-
45
-
-
85057091724
-
Control of bacterial population density with population feedback and molecular sequestration
-
Published online November 25, 2017
-
McCardell, R.D., et al. Control of bacterial population density with population feedback and molecular sequestration. bioRxiv, 2017, 10.1101/225045 Published online November 25, 2017.
-
(2017)
bioRxiv
-
-
McCardell, R.D.1
-
46
-
-
84867746452
-
Metabolic specialization and the assembly of microbial communities
-
Johnson, D.R., et al. Metabolic specialization and the assembly of microbial communities. ISME J. 6 (2012), 1985–1991.
-
(2012)
ISME J.
, vol.6
, pp. 1985-1991
-
-
Johnson, D.R.1
-
47
-
-
84926646130
-
Distributing a metabolic pathway among a microbial consortium enhances production of natural products
-
Zhou, K., et al. Distributing a metabolic pathway among a microbial consortium enhances production of natural products. Nat. Biotechnol. 33 (2015), 377–383.
-
(2015)
Nat. Biotechnol.
, vol.33
, pp. 377-383
-
-
Zhou, K.1
-
48
-
-
85008156860
-
Metabolic engineering of Escherichia coli for microbial synthesis of monolignols
-
Chen, Z., et al. Metabolic engineering of Escherichia coli for microbial synthesis of monolignols. Metab. Eng. 39 (2017), 102–109.
-
(2017)
Metab. Eng.
, vol.39
, pp. 102-109
-
-
Chen, Z.1
-
49
-
-
85042945355
-
Designing metabolic division of labor in microbial communities
-
Published online October 14, 2018
-
Thommes, M., et al. Designing metabolic division of labor in microbial communities. bioRxiv, 2018, 10.1073/pnas.1716888115 Published online October 14, 2018.
-
(2018)
bioRxiv
-
-
Thommes, M.1
-
50
-
-
44949247292
-
Microbial production of plant benzylisoquinoline alkaloids
-
Minami, H., et al. Microbial production of plant benzylisoquinoline alkaloids. Proc. Natl. Acad. Sci. U. S. A. 105 (2008), 7393–7398.
-
(2008)
Proc. Natl. Acad. Sci. U. S. A.
, vol.105
, pp. 7393-7398
-
-
Minami, H.1
-
51
-
-
49949088247
-
Production of benzylisoquinoline alkaloids in Saccharomyces cerevisiae
-
Hawkins, K.M., Smolke, C.D., Production of benzylisoquinoline alkaloids in Saccharomyces cerevisiae. Nat. Chem. Biol. 4 (2008), 564–573.
-
(2008)
Nat. Chem. Biol.
, vol.4
, pp. 564-573
-
-
Hawkins, K.M.1
Smolke, C.D.2
-
52
-
-
84864416657
-
Multi-species biofilms: living with friendly neighbors
-
Elias, S., Banin, E., Multi-species biofilms: living with friendly neighbors. FEMS Microbiol. Rev. 36 (2012), 990–1004.
-
(2012)
FEMS Microbiol. Rev.
, vol.36
, pp. 990-1004
-
-
Elias, S.1
Banin, E.2
-
53
-
-
1842612577
-
Bacterial biofilms: from the natural environment to infectious diseases
-
Hall-Stoodley, L., et al. Bacterial biofilms: from the natural environment to infectious diseases. Nat. Rev. Microbiol. 2 (2004), 95–108.
-
(2004)
Nat. Rev. Microbiol.
, vol.2
, pp. 95-108
-
-
Hall-Stoodley, L.1
-
54
-
-
85053838005
-
A synthetic bacterial cell-cell adhesion toolbox for programming multicellular morphologies and patterns
-
Glass, D.S., Riedel-Kruse, I.H., A synthetic bacterial cell-cell adhesion toolbox for programming multicellular morphologies and patterns. Cell 174 (2018), 649–658.
-
(2018)
Cell
, vol.174
, pp. 649-658
-
-
Glass, D.S.1
Riedel-Kruse, I.H.2
-
55
-
-
85044870211
-
Biofilm lithography enables high-resolution cell patterning via optogenetic adhesin expression
-
Jin, X., Riedel-Kruse, I.H., Biofilm lithography enables high-resolution cell patterning via optogenetic adhesin expression. Proc. Natl. Acad. Sci. U. S. A. 115 (2018), 3698–3703.
-
(2018)
Proc. Natl. Acad. Sci. U. S. A.
, vol.115
, pp. 3698-3703
-
-
Jin, X.1
Riedel-Kruse, I.H.2
-
56
-
-
84861387333
-
Sticky situations: key components that control bacterial surface attachment
-
Petrova, O.E., Sauer, K., Sticky situations: key components that control bacterial surface attachment. J. Bacteriol. 194 (2012), 2413–2425.
-
(2012)
J. Bacteriol.
, vol.194
, pp. 2413-2425
-
-
Petrova, O.E.1
Sauer, K.2
-
57
-
-
0037154837
-
Extracellular DNA required for bacterial biofilm formation
-
Whitchurch, C.B., et al. Extracellular DNA required for bacterial biofilm formation. Science, 295, 2002, 1487.
-
(2002)
Science
, vol.295
, pp. 1487
-
-
Whitchurch, C.B.1
-
58
-
-
77958457228
-
A structurally tunable DNA-based extracellular matrix
-
Aldaye, F.A., et al. A structurally tunable DNA-based extracellular matrix. J. Am. Chem. Soc. 132 (2010), 14727–14729.
-
(2010)
J. Am. Chem. Soc.
, vol.132
, pp. 14727-14729
-
-
Aldaye, F.A.1
-
59
-
-
84903735259
-
Study of bacterial adhesion on different glycopolymer surfaces by quartz crystal microbalance with dissipation
-
Wang, Y., et al. Study of bacterial adhesion on different glycopolymer surfaces by quartz crystal microbalance with dissipation. Langmuir 30 (2014), 7377–7387.
-
(2014)
Langmuir
, vol.30
, pp. 7377-7387
-
-
Wang, Y.1
-
60
-
-
84904342003
-
Design of microbial consortia for industrial biotechnology
-
Höffner, K., Barton, P.I., Design of microbial consortia for industrial biotechnology. Comput. Aided Chem. Eng. 34 (2014), 65–74.
-
(2014)
Comput. Aided Chem. Eng.
, vol.34
, pp. 65-74
-
-
Höffner, K.1
Barton, P.I.2
-
61
-
-
84904965551
-
Diverse and divergent protein post-translational modifications in two growth stages of a natural microbial community
-
Li, Z., et al. Diverse and divergent protein post-translational modifications in two growth stages of a natural microbial community. Nat. Commun. 5 (2014), 1–11.
-
(2014)
Nat. Commun.
, vol.5
, pp. 1-11
-
-
Li, Z.1
-
62
-
-
84855246842
-
Synthetic Escherichia coli consortia engineered for syntrophy demonstrate enhanced biomass productivity
-
Bernstein, H.C., et al. Synthetic Escherichia coli consortia engineered for syntrophy demonstrate enhanced biomass productivity. J. Biotechnol. 157 (2012), 159–166.
-
(2012)
J. Biotechnol.
, vol.157
, pp. 159-166
-
-
Bernstein, H.C.1
-
63
-
-
84936803078
-
Engineering Escherichia coli coculture systems for the production of biochemical products
-
Zhang, H., et al. Engineering Escherichia coli coculture systems for the production of biochemical products. Proc. Natl. Acad. Sci. U. S. A. 112 (2015), 8266–8271.
-
(2015)
Proc. Natl. Acad. Sci. U. S. A.
, vol.112
, pp. 8266-8271
-
-
Zhang, H.1
-
64
-
-
33751120932
-
Production of isoprenoid pharmaceuticals by engineered microbes
-
Chang, M.C.Y., Keasling, J.D., Production of isoprenoid pharmaceuticals by engineered microbes. Nat. Chem. Biol. 2 (2006), 674–681.
-
(2006)
Nat. Chem. Biol.
, vol.2
, pp. 674-681
-
-
Chang, M.C.Y.1
Keasling, J.D.2
-
65
-
-
84989852376
-
Rewriting yeast central carbon metabolism for industrial isoprenoid production
-
Meadows, A.L., et al. Rewriting yeast central carbon metabolism for industrial isoprenoid production. Nature 537 (2016), 694–697.
-
(2016)
Nature
, vol.537
, pp. 694-697
-
-
Meadows, A.L.1
-
66
-
-
84880380223
-
CYP76AH1 catalyzes turnover of miltiradiene in tanshinones biosynthesis and enables heterologous production of ferruginol in yeasts
-
Guo, J., et al. CYP76AH1 catalyzes turnover of miltiradiene in tanshinones biosynthesis and enables heterologous production of ferruginol in yeasts. Proc. Natl. Acad. Sci. U. S. A. 110 (2013), 12108–12113.
-
(2013)
Proc. Natl. Acad. Sci. U. S. A.
, vol.110
, pp. 12108-12113
-
-
Guo, J.1
-
67
-
-
85021929291
-
Complete biosynthesis of anthocyanins using E. coli polycultures
-
Jones, J.A., et al. Complete biosynthesis of anthocyanins using E. coli polycultures. mBio 8 (2017), 1–9.
-
(2017)
mBio
, vol.8
, pp. 1-9
-
-
Jones, J.A.1
-
68
-
-
85037731688
-
Synthetic microbial consortia enable rapid assembly of pure translation machinery
-
Villarreal, F., et al. Synthetic microbial consortia enable rapid assembly of pure translation machinery. Nat. Chem. Biol. 14 (2018), 29–35.
-
(2018)
Nat. Chem. Biol.
, vol.14
, pp. 29-35
-
-
Villarreal, F.1
-
69
-
-
84971283675
-
Metabolic engineering for expanding the substrate range of Yarrowia lipolytica
-
Ledesma-Amaro, R., Nicaud, J.M., Metabolic engineering for expanding the substrate range of Yarrowia lipolytica. Trends Biotechnol. 34 (2016), 798–809.
-
(2016)
Trends Biotechnol.
, vol.34
, pp. 798-809
-
-
Ledesma-Amaro, R.1
Nicaud, J.M.2
-
70
-
-
84901769672
-
Metabolomic strategies for the identification of new enzyme functions and metabolic pathways
-
Prosser, G.A., et al. Metabolomic strategies for the identification of new enzyme functions and metabolic pathways. EMBO Rep. 15 (2014), 657–669.
-
(2014)
EMBO Rep.
, vol.15
, pp. 657-669
-
-
Prosser, G.A.1
-
71
-
-
84861969435
-
Simultaneous utilization of glucose, xylose and arabinose in the presence of acetate by a consortium of Escherichia coli strains
-
Xia, T., et al. Simultaneous utilization of glucose, xylose and arabinose in the presence of acetate by a consortium of Escherichia coli strains. Microb. Cell Fact., 11, 2012, 1.
-
(2012)
Microb. Cell Fact.
, vol.11
, pp. 1
-
-
Xia, T.1
-
72
-
-
84898053053
-
Engineering of yeast hexose transporters to transport D-xylose without inhibition by D-glucose
-
Farwick, A., et al. Engineering of yeast hexose transporters to transport D-xylose without inhibition by D-glucose. Proc. Natl. Acad. Sci. U. S. A. 111 (2014), 5159–5164.
-
(2014)
Proc. Natl. Acad. Sci. U. S. A.
, vol.111
, pp. 5159-5164
-
-
Farwick, A.1
-
73
-
-
85055076960
-
Fermentation of glucose-xylose-arabinose mixtures by a synthetic consortium of single-sugar-fermenting Saccharomyces cerevisiae strains
-
Verhoeven, M.D., et al. Fermentation of glucose-xylose-arabinose mixtures by a synthetic consortium of single-sugar-fermenting Saccharomyces cerevisiae strains. FEMS Yeast Res., 18(1 December), 2018, 10.1093/femsyr/foy075.
-
(2018)
FEMS Yeast Res.
, vol.18
, Issue.1 December
-
-
Verhoeven, M.D.1
-
74
-
-
85011056324
-
Synthetic photosynthetic consortia define interactions leading to robustness and photoproduction
-
Hays, S.G., et al. Synthetic photosynthetic consortia define interactions leading to robustness and photoproduction. J. Biol. Eng. 11 (2017), 1–14.
-
(2017)
J. Biol. Eng.
, vol.11
, pp. 1-14
-
-
Hays, S.G.1
-
76
-
-
84899477796
-
Synthesis and patterning of tunable multiscale materials with engineered cells
-
Chen, A.Y., et al. Synthesis and patterning of tunable multiscale materials with engineered cells. Nat. Mater. 13 (2014), 515–523.
-
(2014)
Nat. Mater.
, vol.13
, pp. 515-523
-
-
Chen, A.Y.1
-
77
-
-
85020894803
-
Extracellular self-assembly of functional and tunable protein conjugates from Bacillus subtilis
-
Gilbert, C., et al. Extracellular self-assembly of functional and tunable protein conjugates from Bacillus subtilis. ACS Synth. Biol. 6 (2017), 957–967.
-
(2017)
ACS Synth. Biol.
, vol.6
, pp. 957-967
-
-
Gilbert, C.1
-
78
-
-
84865156886
-
Self-surface assembly of cellulosomes with two miniscaffoldins on Saccharomyces cerevisiae for cellulosic ethanol production
-
Fan, L.-H., et al. Self-surface assembly of cellulosomes with two miniscaffoldins on Saccharomyces cerevisiae for cellulosic ethanol production. Proc. Natl. Acad. Sci. U. S. A. 109 (2012), 13260–13265.
-
(2012)
Proc. Natl. Acad. Sci. U. S. A.
, vol.109
, pp. 13260-13265
-
-
Fan, L.-H.1
-
79
-
-
84929512453
-
Sequencing and beyond: integrating molecular “omics” for microbial community profiling
-
Franzosa, E.A., et al. Sequencing and beyond: integrating molecular “omics” for microbial community profiling. Nat. Rev. Microbiol. 13 (2015), 360–372.
-
(2015)
Nat. Rev. Microbiol.
, vol.13
, pp. 360-372
-
-
Franzosa, E.A.1
-
80
-
-
85045428868
-
Structure and co-occurrence patterns in microbial communities under acute environmental stress reveal ecological factors fostering resilience
-
Mandakovic, D., et al. Structure and co-occurrence patterns in microbial communities under acute environmental stress reveal ecological factors fostering resilience. Sci. Rep. 8 (2018), 1–12.
-
(2018)
Sci. Rep.
, vol.8
, pp. 1-12
-
-
Mandakovic, D.1
-
81
-
-
85044589051
-
CRISPR-based genomic tools for the manipulation of genetically intractable microorganisms
-
Shapiro, R.S., et al. CRISPR-based genomic tools for the manipulation of genetically intractable microorganisms. Nat. Rev. Microbiol. 16 (2018), 333–339.
-
(2018)
Nat. Rev. Microbiol.
, vol.16
, pp. 333-339
-
-
Shapiro, R.S.1
-
82
-
-
84958247886
-
Synthetic biology to access and expand nature's chemical diversity
-
Smanski, M.J., et al. Synthetic biology to access and expand nature's chemical diversity. Nat. Rev. Microbiol. 14 (2016), 135–149.
-
(2016)
Nat. Rev. Microbiol.
, vol.14
, pp. 135-149
-
-
Smanski, M.J.1
-
83
-
-
84983319518
-
A synthetic multicellular memory device
-
Urrios, A., et al. A synthetic multicellular memory device. ACS Synth. Biol. 5 (2016), 862–873.
-
(2016)
ACS Synth. Biol.
, vol.5
, pp. 862-873
-
-
Urrios, A.1
-
84
-
-
84959572927
-
Implementation of complex biological logic circuits using spatially distributed multicellular consortia
-
Macia, J., et al. Implementation of complex biological logic circuits using spatially distributed multicellular consortia. PLoS Comput. Biol. 12 (2016), 1–24.
-
(2016)
PLoS Comput. Biol.
, vol.12
, pp. 1-24
-
-
Macia, J.1
-
85
-
-
85043507024
-
Engineering bacteria for diagnostic and therapeutic applications
-
Riglar, D.T., Silver, P.A., Engineering bacteria for diagnostic and therapeutic applications. Nat. Rev. Microbiol. 16 (2018), 214–225.
-
(2018)
Nat. Rev. Microbiol.
, vol.16
, pp. 214-225
-
-
Riglar, D.T.1
Silver, P.A.2
-
86
-
-
85053084082
-
Development of a synthetic live bacterial therapeutic for the human metabolic disease phenylketonuria
-
Isabella, V.M., et al. Development of a synthetic live bacterial therapeutic for the human metabolic disease phenylketonuria. Nat. Biotechnol. 36 (2018), 857–864.
-
(2018)
Nat. Biotechnol.
, vol.36
, pp. 857-864
-
-
Isabella, V.M.1
-
87
-
-
85017396256
-
Engineered probiotic Escherichia coli can eliminate and prevent Pseudomonas aeruginosa gut infection in animal models
-
Hwang, I.Y., et al. Engineered probiotic Escherichia coli can eliminate and prevent Pseudomonas aeruginosa gut infection in animal models. Nat. Commun. 8 (2017), 1–11.
-
(2017)
Nat. Commun.
, vol.8
, pp. 1-11
-
-
Hwang, I.Y.1
-
88
-
-
85057072098
-
Inducible cooperation in a synthetic gut bacterial consortium introduces population balance and stability
-
Published online September 25, 2018
-
Ziesack, M., et al. Inducible cooperation in a synthetic gut bacterial consortium introduces population balance and stability. bioRxiv, 2018, 10.1101/426171 Published online September 25, 2018.
-
(2018)
bioRxiv
-
-
Ziesack, M.1
-
89
-
-
84863920287
-
Microbial interactions: from networks to models
-
Faust, K., Raes, J., Microbial interactions: from networks to models. Nat. Rev. Microbiol. 10 (2012), 538–550.
-
(2012)
Nat. Rev. Microbiol.
, vol.10
, pp. 538-550
-
-
Faust, K.1
Raes, J.2
-
90
-
-
84875883112
-
Fundamentals of microbial community resistance and resilience
-
Shade, A., et al. Fundamentals of microbial community resistance and resilience. Front. Microbiol. 3 (2012), 1–19.
-
(2012)
Front. Microbiol.
, vol.3
, pp. 1-19
-
-
Shade, A.1
-
91
-
-
85051972293
-
Metabolic interactions between dynamic bacterial subpopulations
-
Rosenthal, A.Z., et al. Metabolic interactions between dynamic bacterial subpopulations. eLife 7 (2018), 1–18.
-
(2018)
eLife
, vol.7
, pp. 1-18
-
-
Rosenthal, A.Z.1
-
92
-
-
0035955371
-
Biodiversity and ecosystem functioning: current knowledge and future challenges
-
Loreau, M., et al. Biodiversity and ecosystem functioning: current knowledge and future challenges. Science 294 (2001), 804–808.
-
(2001)
Science
, vol.294
, pp. 804-808
-
-
Loreau, M.1
-
93
-
-
42149089190
-
A synthetic Escherichia coli predator-prey ecosystem
-
Balagaddé F.K., et al. A synthetic Escherichia coli predator-prey ecosystem. Mol. Syst. Biol. 4 (2008), 1–8.
-
(2008)
Mol. Syst. Biol.
, vol.4
, pp. 1-8
-
-
Balagaddé, F.K.1
-
94
-
-
77956280046
-
An environment-sensitive synthetic microbial ecosystem
-
Hu, B., et al. An environment-sensitive synthetic microbial ecosystem. PLoS One 5 (2010), 1–9.
-
(2010)
PLoS One
, vol.5
, pp. 1-9
-
-
Hu, B.1
-
95
-
-
84960382191
-
Engineering microbial consortia for controllable outputs
-
Lindemann, S.R., et al. Engineering microbial consortia for controllable outputs. ISME J. 10 (2016), 2077–2084.
-
(2016)
ISME J.
, vol.10
, pp. 2077-2084
-
-
Lindemann, S.R.1
-
96
-
-
84865759667
-
Engineering ecosystems and synthetic ecologies
-
Mee, M.T., Wang, H.H., Engineering ecosystems and synthetic ecologies. Mol. Biosyst. 8 (2012), 2470–2483.
-
(2012)
Mol. Biosyst.
, vol.8
, pp. 2470-2483
-
-
Mee, M.T.1
Wang, H.H.2
-
97
-
-
84892708007
-
Ecological modeling from time-series inference: insight into dynamics and stability of intestinal microbiota
-
Stein, R.R., et al. Ecological modeling from time-series inference: insight into dynamics and stability of intestinal microbiota. PLoS Comput. Biol. 9 (2013), 31–36.
-
(2013)
PLoS Comput. Biol.
, vol.9
, pp. 31-36
-
-
Stein, R.R.1
-
98
-
-
84907692666
-
Dynamic flux balance analysis for synthetic microbial communities
-
Henson, M.A., Hanly, T.J., Dynamic flux balance analysis for synthetic microbial communities. IET Syst. Biol. 8 (2014), 214–229.
-
(2014)
IET Syst. Biol.
, vol.8
, pp. 214-229
-
-
Henson, M.A.1
Hanly, T.J.2
-
99
-
-
77749320898
-
What is flux balance analysis?
-
Orth, J.D., et al. What is flux balance analysis?. Nat. Biotechnol. 28 (2010), 245–248.
-
(2010)
Nat. Biotechnol.
, vol.28
, pp. 245-248
-
-
Orth, J.D.1
-
100
-
-
85057094050
-
In silico approaches to study mass and energy flows in microbial consortia: a syntrophic case study
-
Taffs, R., et al. In silico approaches to study mass and energy flows in microbial consortia: a syntrophic case study. BMC Syst. Biol. 3 (2009), 1–16.
-
(2009)
BMC Syst. Biol.
, vol.3
, pp. 1-16
-
-
Taffs, R.1
-
101
-
-
85031907995
-
BSim 2.0: an advanced agent-based cell simulator
-
Matyjaszkiewicz, A., et al. BSim 2.0: an advanced agent-based cell simulator. ACS Synth. Biol. 6 (2017), 1969–1972.
-
(2017)
ACS Synth. Biol.
, vol.6
, pp. 1969-1972
-
-
Matyjaszkiewicz, A.1
-
102
-
-
85027548145
-
A new improved and extended version of the multicell bacterial simulator gro
-
Gutiérrez, M., et al. A new improved and extended version of the multicell bacterial simulator gro. ACS Synth. Biol. 6 (2017), 1496–1508.
-
(2017)
ACS Synth. Biol.
, vol.6
, pp. 1496-1508
-
-
Gutiérrez, M.1
-
103
-
-
84883326386
-
Design and characterization of synthetic fungal-bacterial consortia for direct production of isobutanol from cellulosic biomass
-
Minty, J.J., et al. Design and characterization of synthetic fungal-bacterial consortia for direct production of isobutanol from cellulosic biomass. Proc. Natl. Acad. Sci. U. S. A. 110 (2013), 14592–14597.
-
(2013)
Proc. Natl. Acad. Sci. U. S. A.
, vol.110
, pp. 14592-14597
-
-
Minty, J.J.1
-
104
-
-
0037363293
-
A constructed microbial consortium for biodegradation of the organophosphorus insecticide parathion
-
Gilbert, E.S., et al. A constructed microbial consortium for biodegradation of the organophosphorus insecticide parathion. Appl. Microbiol. Biotechnol. 61 (2003), 77–81.
-
(2003)
Appl. Microbiol. Biotechnol.
, vol.61
, pp. 77-81
-
-
Gilbert, E.S.1
-
105
-
-
84055200869
-
Synthesis of three advanced biofuels from ionic liquid-pretreated switchgrass using engineered Escherichia coli
-
Bokinsky, G., et al. Synthesis of three advanced biofuels from ionic liquid-pretreated switchgrass using engineered Escherichia coli. Proc. Natl. Acad. Sci. U. S. A. 108 (2011), 19949–19954.
-
(2011)
Proc. Natl. Acad. Sci. U. S. A.
, vol.108
, pp. 19949-19954
-
-
Bokinsky, G.1
-
106
-
-
78649713858
-
Surface display of a functional minicellulosome by intracellular complementation using a synthetic yeast consortium and its application to cellulose hydrolysis and ethanol production
-
Tsai, S.L., et al. Surface display of a functional minicellulosome by intracellular complementation using a synthetic yeast consortium and its application to cellulose hydrolysis and ethanol production. Appl. Environ. Microbiol. 76 (2010), 7514–7520.
-
(2010)
Appl. Environ. Microbiol.
, vol.76
, pp. 7514-7520
-
-
Tsai, S.L.1
-
107
-
-
70149113922
-
Synthesis of methyl halides from biomass using engineered microbes
-
Bayer, T.S., et al. Synthesis of methyl halides from biomass using engineered microbes. J. Am. Chem. Soc. 131 (2009), 6508–6515.
-
(2009)
J. Am. Chem. Soc.
, vol.131
, pp. 6508-6515
-
-
Bayer, T.S.1
-
108
-
-
84959086912
-
Reorganization of a synthetic microbial consortium for one-step vitamin C fermentation
-
Wang, E.X., et al. Reorganization of a synthetic microbial consortium for one-step vitamin C fermentation. Microb. Cell Fact. 15 (2016), 1–11.
-
(2016)
Microb. Cell Fact.
, vol.15
, pp. 1-11
-
-
Wang, E.X.1
-
109
-
-
84863011639
-
Synthetic quorum-sensing circuit to control consortial biofilm formation and dispersal in a microfluidic device
-
Hong, S.H., et al. Synthetic quorum-sensing circuit to control consortial biofilm formation and dispersal in a microfluidic device. Nat. Commun., 3, 2012, 613.
-
(2012)
Nat. Commun.
, vol.3
, pp. 613
-
-
Hong, S.H.1
-
110
-
-
78651406505
-
Distributed biological computation with multicellular engineered networks
-
Regot, S., et al. Distributed biological computation with multicellular engineered networks. Nature 469 (2011), 207–211.
-
(2011)
Nature
, vol.469
, pp. 207-211
-
-
Regot, S.1
-
111
-
-
78651397316
-
Robust multicellular computing using genetically encoded NOR gates and chemical “wires”
-
Tamsir, A., et al. Robust multicellular computing using genetically encoded NOR gates and chemical “wires”. Nature 469 (2011), 212–215.
-
(2011)
Nature
, vol.469
, pp. 212-215
-
-
Tamsir, A.1
-
112
-
-
85042552153
-
Programmed hierarchical patterning of bacterial populations
-
Boehm, C.R., et al. Programmed hierarchical patterning of bacterial populations. Nat. Commun., 9, 2018, 776.
-
(2018)
Nat. Commun.
, vol.9
, pp. 776
-
-
Boehm, C.R.1
-
113
-
-
17844374314
-
A synthetic multicellular system for programmed pattern formation
-
Basu, S., et al. A synthetic multicellular system for programmed pattern formation. Nature 434 (2005), 1130–1134.
-
(2005)
Nature
, vol.434
, pp. 1130-1134
-
-
Basu, S.1
-
114
-
-
85020680103
-
Naringenin-responsive riboswitch-based fluorescent biosensor module for Escherichia coli co-cultures
-
Xiu, Y., et al. Naringenin-responsive riboswitch-based fluorescent biosensor module for Escherichia coli co-cultures. Biotechnol. Bioeng. 114 (2017), 2235–2244.
-
(2017)
Biotechnol. Bioeng.
, vol.114
, pp. 2235-2244
-
-
Xiu, Y.1
-
115
-
-
84937923660
-
Optimization of a whole-cell biocatalyst by employing genetically encoded product sensors inside nanolitre reactors
-
Meyer, A., et al. Optimization of a whole-cell biocatalyst by employing genetically encoded product sensors inside nanolitre reactors. Nat. Chem. 7 (2015), 673–678.
-
(2015)
Nat. Chem.
, vol.7
, pp. 673-678
-
-
Meyer, A.1
|