-
1
-
-
84861342483
-
Distributed computation: The new wave of synthetic biology devices
-
Macía, J., Posas, F., and Solé, R. V. (2012) Distributed computation: the new wave of synthetic biology devices Trends Biotechnol. 30, 342-349 10.1016/j.tibtech.2012.03.006
-
(2012)
Trends Biotechnol.
, vol.30
, pp. 342-349
-
-
Macía, J.1
Posas, F.2
Solé, R.V.3
-
2
-
-
33645429016
-
Exact stochastic simulation of coupled chemical reactions
-
Gillespie, D. T. (1977) Exact stochastic simulation of coupled chemical reactions J. Phys. Chem. 81, 2340-2361 10.1021/j100540a008
-
(1977)
J. Phys. Chem.
, vol.81
, pp. 2340-2361
-
-
Gillespie, D.T.1
-
3
-
-
52649087274
-
Modelling and analysis of gene regulatory networks
-
Karlebach, G. and Shamir, R. (2008) Modelling and analysis of gene regulatory networks Nat. Rev. Mol. Cell Biol. 9, 770-780 10.1038/nrm2503
-
(2008)
Nat. Rev. Mol. Cell Biol.
, vol.9
, pp. 770-780
-
-
Karlebach, G.1
Shamir, R.2
-
4
-
-
84973474463
-
Advancing microbial sciences by individual-based modelling
-
Hellweger, F. L., Clegg, R. J., Clark, J. R., Plugge, C. M., and Kreft, J.-U. (2016) Advancing microbial sciences by individual-based modelling Nat. Rev. Microbiol. 14, 461-471 10.1038/nrmicro.2016.62
-
(2016)
Nat. Rev. Microbiol.
, vol.14
, pp. 461-471
-
-
Hellweger, F.L.1
Clegg, R.J.2
Clark, J.R.3
Plugge, C.M.4
Kreft, J.-U.5
-
5
-
-
85013413953
-
Agent-based modelling in synthetic biology
-
Gorochowski, T. E. (2016) Agent-based modelling in synthetic biology Essays Biochem. 60, 325-336 10.1042/EBC20160037
-
(2016)
Essays Biochem.
, vol.60
, pp. 325-336
-
-
Gorochowski, T.E.1
-
6
-
-
85054271306
-
-
Song, H., Cannon, W. R., Beliaev, A. S., and Konopka, A. (2014) Processes 2, 711-752 10.3390/pr2040711
-
(2014)
Processes
, vol.2
, pp. 711-752
-
-
Song, H.1
Cannon, W.R.2
Beliaev, A.S.3
Konopka, A.4
-
7
-
-
84868261037
-
Computational Modeling of Synthetic Microbial Biofilms
-
Rudge, T. J., Steiner, P. J., Phillips, A., and Haseloff, J. (2012) Computational Modeling of Synthetic Microbial Biofilms ACS Synth. Biol. 1, 345-352 10.1021/sb300031n
-
(2012)
ACS Synth. Biol.
, vol.1
, pp. 345-352
-
-
Rudge, T.J.1
Steiner, P.J.2
Phillips, A.3
Haseloff, J.4
-
8
-
-
80052631835
-
IDynoMiCS: Next-generation individual-based modelling of biofilms
-
Lardon, L. A., Merkey, B. V., Martins, S., Dötsch, A., Picioreanu, C., Kreft, J.-U., and Smets, B. F. (2011) iDynoMiCS: next-generation individual-based modelling of biofilms Environ. Microbiol. 13, 2416-2434 10.1111/j.1462-2920.2011.02414.x
-
(2011)
Environ. Microbiol.
, vol.13
, pp. 2416-2434
-
-
Lardon, L.A.1
Merkey, B.V.2
Martins, S.3
Dötsch, A.4
Picioreanu, C.5
Kreft, J.-U.6
Smets, B.F.7
-
9
-
-
84911403647
-
Biocellion: Accelerating Computer Simulation of Multicellular Biological System Models
-
Kang, S., Kahan, S., McDermott, J., Flann, N., and Shmulevich, I. (2014) Biocellion: Accelerating Computer Simulation of Multicellular Biological System Models Bioinformatics 30, 3101-3108 10.1093/bioinformatics/btu498
-
(2014)
Bioinformatics
, vol.30
, pp. 3101-3108
-
-
Kang, S.1
Kahan, S.2
McDermott, J.3
Flann, N.4
Shmulevich, I.5
-
10
-
-
85027569358
-
-
Georgiev Lab. CeCe. Accessed March 21
-
Georgiev Lab. CeCe. https://github.com/GeorgievLab/CeCe/, Accessed March 21, 2017.
-
(2017)
-
-
-
11
-
-
84868233914
-
Specification and Simulation of Synthetic Multicelled Behaviors
-
Jang, S. S., Oishi, K. T., Egbert, R. G., and Klavins, E. (2012) Specification and Simulation of Synthetic Multicelled Behaviors ACS Synth. Biol. 1, 365-374 10.1021/sb300034m
-
(2012)
ACS Synth. Biol.
, vol.1
, pp. 365-374
-
-
Jang, S.S.1
Oishi, K.T.2
Egbert, R.G.3
Klavins, E.4
-
12
-
-
84865281046
-
BSim: An Agent-Based Tool for Modeling Bacterial Populations in Systems and Synthetic Biology
-
Gorochowski, T. E., Matyjaszkiewicz, A., Todd, T., Oak, N., Kowalska, K., Reid, S., Tsaneva-Atanasova, K. T., Savery, N. J., Grierson, C. S., and Di Bernardo, M. (2012) BSim: An Agent-Based Tool for Modeling Bacterial Populations in Systems and Synthetic Biology PLoS One 7, e42790 10.1371/journal.pone.0042790
-
(2012)
PLoS One
, vol.7
, pp. e42790
-
-
Gorochowski, T.E.1
Matyjaszkiewicz, A.2
Todd, T.3
Oak, N.4
Kowalska, K.5
Reid, S.6
Tsaneva-Atanasova, K.T.7
Savery, N.J.8
Grierson, C.S.9
Di Bernardo, M.10
-
14
-
-
34547868946
-
Modelling the spatial dynamics of plasmid transfer and persistence
-
Krone, S. M., Lu, R., Fox, R., Suzuki, H., and Top, E. M. (2007) Modelling the spatial dynamics of plasmid transfer and persistence Microbiology 153, 2803-16 10.1099/mic.0.2006/004531-0
-
(2007)
Microbiology
, vol.153
, pp. 2803-2816
-
-
Krone, S.M.1
Lu, R.2
Fox, R.3
Suzuki, H.4
Top, E.M.5
-
15
-
-
84901273253
-
Metabolic resource allocation in individual microbes determines ecosystem interactions and spatial dynamics
-
Harcombe, W. R., Riehl, W. J., Dukovski, I., Granger, B. R., Betts, A., Lang, A. H., Bonilla, G., Kar, A., Leiby, N., and Mehta, P. et al. 2014, Metabolic resource allocation in individual microbes determines ecosystem interactions and spatial dynamics Cell Rep. 7, 1104-1115 10.1016/j.celrep.2014.03.070
-
(2014)
Cell Rep.
, vol.7
, pp. 1104-1115
-
-
Harcombe, W.R.1
Riehl, W.J.2
Dukovski, I.3
Granger, B.R.4
Betts, A.5
Lang, A.H.6
Bonilla, G.7
Kar, A.8
Leiby, N.9
Mehta, P.10
-
16
-
-
84879255427
-
Multicellular computing using conjugation for wiring
-
Goni-Moreno, A., Amos, M., and de la Cruz, F. (2013) Multicellular computing using conjugation for wiring PLoS One 8, e65986 10.1371/journal.pone.0065986
-
(2013)
PLoS One
, vol.8
, pp. e65986
-
-
Goni-Moreno, A.1
Amos, M.2
De La Cruz, F.3
-
17
-
-
84889000190
-
Repast: An extensible framework for agent simulation
-
Collier, N. (2003) Repast: An extensible framework for agent simulation Univ. Chicago's Soc. Sci. Res. 36, 2003
-
(2003)
Univ. Chicago's Soc. Sci. Res.
, vol.36
, pp. 2003
-
-
Collier, N.1
-
18
-
-
84877672268
-
FLAME: Simulating large populations of agents on parallel hardware architectures
-
Kiran, M., Richmond, P., Holcombe, M., Chin, L. S., Worth, D., and Greenough, C. (2010) FLAME: simulating large populations of agents on parallel hardware architectures Proceedings of the 9th International Conference on Autonomous Agents and Multiagent Systems 1633-1636
-
(2010)
Proceedings of the 9th International Conference on Autonomous Agents and Multiagent Systems
, pp. 1633-1636
-
-
Kiran, M.1
Richmond, P.2
Holcombe, M.3
Chin, L.S.4
Worth, D.5
Greenough, C.6
-
20
-
-
26844529359
-
Mason: A multiagent simulation environment
-
Luke, S., Cioffi-Revilla, C., Panait, L., Sullivan, K., and Balan, G. (2005) Mason: A multiagent simulation environment Simulation 81, 517-527 10.1177/0037549705058073
-
(2005)
Simulation
, vol.81
, pp. 517-527
-
-
Luke, S.1
Cioffi-Revilla, C.2
Panait, L.3
Sullivan, K.4
Balan, G.5
-
21
-
-
85027559583
-
-
GRO Github. Accessed March 21
-
Klavins, E. GRO Github. https://github.com/klavinslab/gro, Accessed March 21, 2017.
-
(2017)
-
-
Klavins, E.1
-
22
-
-
84978633766
-
Synthetic collective intelligence
-
Solé, R., Amor, D. R., Duran-Nebreda, S., Conde-Pueyo, N., Carbonell-Ballestero, M., and Montanez, R. (2016) Synthetic collective intelligence BioSystems 148, 47-61 10.1016/j.biosystems.2016.01.002
-
(2016)
BioSystems
, vol.148
, pp. 47-61
-
-
Solé, R.1
Amor, D.R.2
Duran-Nebreda, S.3
Conde-Pueyo, N.4
Carbonell-Ballestero, M.5
Montanez, R.6
-
23
-
-
84983372604
-
Developmental design of synthetic bacterial architectures by morphogenetic engineering
-
Pascalie, J., Potier, M., Kowaliw, T., Giavitto, J.-L., Michel, O., Spicher, A., and Doursat, R. (2016) Developmental design of synthetic bacterial architectures by morphogenetic engineering ACS Synth. Biol. 5, 842-861 10.1021/acssynbio.5b00246
-
(2016)
ACS Synth. Biol.
, vol.5
, pp. 842-861
-
-
Pascalie, J.1
Potier, M.2
Kowaliw, T.3
Giavitto, J.-L.4
Michel, O.5
Spicher, A.6
Doursat, R.7
-
24
-
-
85027542324
-
-
GRO simulation after five days. Accessed March 21
-
Klavins, E. GRO simulation after five days. https://www.youtube.com/watch?v=P0ykJZhcOwI, Accessed March 21, 2017.
-
(2017)
-
-
Klavins, E.1
-
25
-
-
85027585908
-
-
Howling Moon Software. (2011) Chipmunk. Accessed March 21
-
Lembcke, S., and Howling Moon Software. (2011) Chipmunk. Chipmunk 2D Phys. https://chipmunk-physics.net/, Accessed March 21, 2017.
-
(2017)
Chipmunk 2D Phys.
-
-
Lembcke, S.1
-
26
-
-
3042649845
-
A language for modeling and programming cooperative control systems
-
Klavins, E. (2004) A language for modeling and programming cooperative control systems IEEE International Conference on Robotics and Automation 3403-3410 10.1109/ROBOT.2004.1308780
-
(2004)
IEEE International Conference on Robotics and Automation
, pp. 3403-3410
-
-
Klavins, E.1
-
30
-
-
0002439750
-
An efficient program for many-body simulation
-
Appel, A. W. (1985) An efficient program for many-body simulation SIAM J. Sci. Stat. Comput. 6, 85-103 10.1137/0906008
-
(1985)
SIAM J. Sci. Stat. Comput.
, vol.6
, pp. 85-103
-
-
Appel, A.W.1
-
31
-
-
85021630072
-
D-VASim: An interactive virtual laboratory environment for the simulation and analysis of genetic circuits
-
Baig, H. and Madsen, J. (2017) D-VASim: an interactive virtual laboratory environment for the simulation and analysis of genetic circuits Bioinformatics 33, 297-299 10.1093/bioinformatics/btw592
-
(2017)
Bioinformatics
, vol.33
, pp. 297-299
-
-
Baig, H.1
Madsen, J.2
-
32
-
-
83655164994
-
Ultra-small block-codes for binary discrete memoryless channels
-
Chen, P.-N., Lin, H.-Y., and Moser, S. M. (2011) Ultra-small block-codes for binary discrete memoryless channels IEEE Information Theory Workshop 175-179 10.1109/ITW.2011.6089371
-
(2011)
IEEE Information Theory Workshop
, pp. 175-179
-
-
Chen, P.-N.1
Lin, H.-Y.2
Moser, S.M.3
-
33
-
-
27244433119
-
An introduction to probabilistic automata
-
Stoelinga, M. (2002) An introduction to probabilistic automata Bull. EATCS 78, 176-198
-
(2002)
Bull. EATCS
, vol.78
, pp. 176-198
-
-
Stoelinga, M.1
-
34
-
-
0037036274
-
Automatic verification of real-time systems with discrete probability distributions
-
Kwiatkowska, M., Norman, G., Segala, R., and Sproston, J. (2002) Automatic verification of real-time systems with discrete probability distributions Theor. Comput. Sci. 282, 101-150 10.1016/S0304-3975(01)00046-9
-
(2002)
Theor. Comput. Sci.
, vol.282
, pp. 101-150
-
-
Kwiatkowska, M.1
Norman, G.2
Segala, R.3
Sproston, J.4
-
36
-
-
55749109214
-
Biomechanical ordering of dense cell populations
-
Volfson, D., Cookson, S., Hasty, J., and Tsimring, L. S. (2008) Biomechanical ordering of dense cell populations Proc. Natl. Acad. Sci. U. S. A. 105, 15346-15351 10.1073/pnas.0706805105
-
(2008)
Proc. Natl. Acad. Sci. U. S. A.
, vol.105
, pp. 15346-15351
-
-
Volfson, D.1
Cookson, S.2
Hasty, J.3
Tsimring, L.S.4
-
38
-
-
0001639179
-
The growth of bacterial cultures
-
Monod, J. (1949) The growth of bacterial cultures Annu. Rev. Microbiol. 3, 371-394 10.1146/annurev.mi.03.100149.002103
-
(1949)
Annu. Rev. Microbiol.
, vol.3
, pp. 371-394
-
-
Monod, J.1
-
39
-
-
0014083610
-
A kinetic study of the mode of growth of surface colonies of bacteria and fungi
-
Pirt, S. (1967) A kinetic study of the mode of growth of surface colonies of bacteria and fungi J. Gen. Microbiol. 47, 181-197 10.1099/00221287-47-2-181
-
(1967)
J. Gen. Microbiol.
, vol.47
, pp. 181-197
-
-
Pirt, S.1
-
40
-
-
84920932748
-
Three-dimensional characterization of bacterial microcolonies on solid agar-based culture media
-
Drazek, L., Tournoud, M., Derepas, F., Guicherd, M., Mahé, P., Pinston, F., Veyrieras, J.-B., and Chatellier, S. (2015) Three-dimensional characterization of bacterial microcolonies on solid agar-based culture media J. Microbiol. Methods 109, 149-156 10.1016/j.mimet.2014.12.011
-
(2015)
J. Microbiol. Methods
, vol.109
, pp. 149-156
-
-
Drazek, L.1
Tournoud, M.2
Derepas, F.3
Guicherd, M.4
Mahé, P.5
Pinston, F.6
Veyrieras, J.-B.7
Chatellier, S.8
-
41
-
-
0019419796
-
The influence of nutrition and temperature on the growth of colonies of Escherichia coli K12
-
Lewis, M. W. and Wimpenny, J. W. (1981) The influence of nutrition and temperature on the growth of colonies of Escherichia coli K12 Can. J. Microbiol. 27, 679-684 10.1139/m81-105
-
(1981)
Can. J. Microbiol.
, vol.27
, pp. 679-684
-
-
Lewis, M.W.1
Wimpenny, J.W.2
-
42
-
-
84885804295
-
Mechanically driven growth of quasi-two-dimensional microbial colonies
-
Farrell, F. D. C., Hallatschek, O., Marenduzzo, D., and Waclaw, B. (2013) Mechanically driven growth of quasi-two-dimensional microbial colonies Phys. Rev. Lett. 111, 168101 10.1103/PhysRevLett.111.168101
-
(2013)
Phys. Rev. Lett.
, vol.111
, pp. 168101
-
-
Farrell, F.D.C.1
Hallatschek, O.2
Marenduzzo, D.3
Waclaw, B.4
-
43
-
-
67650787141
-
Pattern Formation of Bacterial Colonies by Escherichia coli
-
Tokita, R., Katoh, T., Maeda, Y., Wakita, J., Sano, M., Matsuyama, T., and Matsushita, M. (2009) Pattern Formation of Bacterial Colonies by Escherichia coli J. Phys. Soc. Jpn. 78, 74005 10.1143/JPSJ.78.074005
-
(2009)
J. Phys. Soc. Jpn.
, vol.78
, pp. 74005
-
-
Tokita, R.1
Katoh, T.2
Maeda, Y.3
Wakita, J.4
Sano, M.5
Matsuyama, T.6
Matsushita, M.7
-
44
-
-
0035675837
-
Regulation of gene expression by cell-to-cell communication: Acyl-homoserine lactone quorum sensing
-
Fuqua, C., Parsek, M. R., and Greenberg, E. P. (2001) Regulation of gene expression by cell-to-cell communication: acyl-homoserine lactone quorum sensing Annu. Rev. Genet. 35, 439-468 10.1146/annurev.genet.35.102401.090913
-
(2001)
Annu. Rev. Genet.
, vol.35
, pp. 439-468
-
-
Fuqua, C.1
Parsek, M.R.2
Greenberg, E.P.3
-
45
-
-
0034770056
-
Quorum sensing in bacteria
-
Miller, M. B. and Bassler, B. L. (2001) Quorum sensing in bacteria Annu. Rev. Microbiol. 55, 165-199 10.1146/annurev.micro.55.1.165
-
(2001)
Annu. Rev. Microbiol.
, vol.55
, pp. 165-199
-
-
Miller, M.B.1
Bassler, B.L.2
-
46
-
-
27944442272
-
Quorum sensing: Cell-to-cell communication in bacteria
-
Waters, C. M. and Bassler, B. L. (2005) Quorum sensing: cell-to-cell communication in bacteria Annu. Rev. Cell Dev. Biol. 21, 319-346 10.1146/annurev.cellbio.21.012704.131001
-
(2005)
Annu. Rev. Cell Dev. Biol.
, vol.21
, pp. 319-346
-
-
Waters, C.M.1
Bassler, B.L.2
-
47
-
-
67549145283
-
A synthetic genetic edge detection program
-
Tabor, J. J., Salis, H. M., Simpson, Z. B., Chevalier, A. a, Levskaya, A., Marcotte, E. M., Voigt, C. a, and Ellington, A. D. (2009) A synthetic genetic edge detection program Cell 137, 1272-1281 10.1016/j.cell.2009.04.048
-
(2009)
Cell
, vol.137
, pp. 1272-1281
-
-
Tabor, J.J.1
Salis, H.M.2
Simpson, Z.B.3
Chevalier, A.A.4
Levskaya, A.5
Marcotte, E.M.6
Voigt, C.A.7
Ellington, A.D.8
-
48
-
-
17844374314
-
A synthetic multicellular system for programmed pattern formation
-
Basu, S., Gerchman, Y., Collins, C. H., Arnold, F. H., and Weiss, R. (2005) A synthetic multicellular system for programmed pattern formation Nature 434, 1130-1134 10.1038/nature03461
-
(2005)
Nature
, vol.434
, pp. 1130-1134
-
-
Basu, S.1
Gerchman, Y.2
Collins, C.H.3
Arnold, F.H.4
Weiss, R.5
-
49
-
-
1942467023
-
Programmed population control by cell-cell communication and regulated killing
-
You, L., Cox, R. S., Weiss, R., and Arnold, F. H. (2004) Programmed population control by cell-cell communication and regulated killing Nature 428, 868-871 10.1038/nature02491
-
(2004)
Nature
, vol.428
, pp. 868-871
-
-
You, L.1
Cox, R.S.2
Weiss, R.3
Arnold, F.H.4
-
50
-
-
42149089190
-
A synthetic Escherichia coli predator-prey ecosystem
-
Balagaddé, F. K., Song, H., Ozaki, J., Collins, C. H., Barnet, M., Arnold, F. H., Quake, S. R., and You, L. (2008) A synthetic Escherichia coli predator-prey ecosystem Mol. Syst. Biol. 4, 187 10.1038/msb.2008.24
-
(2008)
Mol. Syst. Biol.
, vol.4
, pp. 187
-
-
Balagaddé, F.K.1
Song, H.2
Ozaki, J.3
Collins, C.H.4
Barnet, M.5
Arnold, F.H.6
Quake, S.R.7
You, L.8
-
51
-
-
78651397316
-
Robust multicellular computing using genetically encoded NOR gates and chemical "wires
-
Tamsir, A., Tabor, J. J., and Voigt, C. A. (2011) Robust multicellular computing using genetically encoded NOR gates and chemical "wires Nature 469, 212-5 10.1038/nature09565
-
(2011)
Nature
, vol.469
, pp. 212-215
-
-
Tamsir, A.1
Tabor, J.J.2
Voigt, C.A.3
-
52
-
-
0001235787
-
Numerical methods for convection-dominated diffusion problems based on combining the method of characteristics with finite element or finite difference procedures
-
Douglas, J. J. and Russell, T. F. (1982) Numerical methods for convection-dominated diffusion problems based on combining the method of characteristics with finite element or finite difference procedures SIAM J. Numer. Anal. 19, 871-885 10.1137/0719063
-
(1982)
SIAM J. Numer. Anal.
, vol.19
, pp. 871-885
-
-
Douglas, J.J.1
Russell, T.F.2
-
53
-
-
84865815764
-
Engineered cell-cell communication via DNA messaging
-
Ortiz, M. E. and Endy, D. (2012) Engineered cell-cell communication via DNA messaging J. Biol. Eng. 6, 16 10.1186/1754-1611-6-16
-
(2012)
J. Biol. Eng.
, vol.6
, pp. 16
-
-
Ortiz, M.E.1
Endy, D.2
-
54
-
-
77957976940
-
Mobility of plasmids
-
Smillie, C., Garcillán-Barcia, M. P., Francia, M. V., Rocha, E. P. C., and de la Cruz, F. (2010) Mobility of plasmids Microbiol. Mol. Biol. Rev. 74, 434-452 10.1128/MMBR.00020-10
-
(2010)
Microbiol. Mol. Biol. Rev.
, vol.74
, pp. 434-452
-
-
Smillie, C.1
Garcillán-Barcia, M.P.2
Francia, M.V.3
Rocha, E.P.C.4
De La Cruz, F.5
-
55
-
-
44649093274
-
Why is entry exclusion an essential feature of conjugative plasmids?
-
Garcillán-Barcia, M. P. and de la Cruz, F. (2008) Why is entry exclusion an essential feature of conjugative plasmids? Plasmid 60, 1-18 10.1016/j.plasmid.2008.03.002
-
(2008)
Plasmid
, vol.60
, pp. 1-18
-
-
Garcillán-Barcia, M.P.1
De La Cruz, F.2
-
56
-
-
0942301205
-
Kinetics of plasmid segregation in Escherichia coli
-
Gordon, S., Rech, J., Lane, D., and Wright, A. (2004) Kinetics of plasmid segregation in Escherichia coli Mol. Microbiol. 51, 461-469 10.1046/j.1365-2958.2003.03837.x
-
(2004)
Mol. Microbiol.
, vol.51
, pp. 461-469
-
-
Gordon, S.1
Rech, J.2
Lane, D.3
Wright, A.4
-
57
-
-
82055165427
-
On the meaning and estimation of plasmid transfer rates for surface-associated and well-mixed bacterial populations
-
Zhong, X., Droesch, J., Fox, R., Top, E. M., and Krone, S. M. (2012) On the meaning and estimation of plasmid transfer rates for surface-associated and well-mixed bacterial populations J. Theor. Biol. 294, 144-152 10.1016/j.jtbi.2011.10.034
-
(2012)
J. Theor. Biol.
, vol.294
, pp. 144-152
-
-
Zhong, X.1
Droesch, J.2
Fox, R.3
Top, E.M.4
Krone, S.M.5
-
58
-
-
84896115316
-
Susceptible-infectious-recovered models revisited: From the individual level to the population level
-
Magal, P. and Ruan, S. (2014) Susceptible-infectious-recovered models revisited: From the individual level to the population level Math. Biosci. 250, 26-40 10.1016/j.mbs.2014.02.001
-
(2014)
Math. Biosci.
, vol.250
, pp. 26-40
-
-
Magal, P.1
Ruan, S.2
-
59
-
-
84879045964
-
Strong inter-population cooperation leads to partner intermixing in microbial communities
-
Momeni, B., Brileya, K. A., Fields, M. W., and Shou, W. (2013) Strong inter-population cooperation leads to partner intermixing in microbial communities eLife 2, e00230 10.7554/eLife.00230
-
(2013)
ELife
, vol.2
, pp. e00230
-
-
Momeni, B.1
Brileya, K.A.2
Fields, M.W.3
Shou, W.4
-
60
-
-
84941626864
-
Bacterial social interactions drive the emergence of differential spatial colony structures
-
Blanchard, A. E. and Lu, T. (2015) Bacterial social interactions drive the emergence of differential spatial colony structures BMC Syst. Biol. 9, 59 10.1186/s12918-015-0188-5
-
(2015)
BMC Syst. Biol.
, vol.9
, pp. 59
-
-
Blanchard, A.E.1
Lu, T.2
-
61
-
-
34548305141
-
Mobility promotes and jeopardizes biodiversity in rock-paper-scissors games
-
Reichenbach, T., Mobilia, M., and Frey, E. (2007) Mobility promotes and jeopardizes biodiversity in rock-paper-scissors games Nature 448, 1046-1049 10.1038/nature06095
-
(2007)
Nature
, vol.448
, pp. 1046-1049
-
-
Reichenbach, T.1
Mobilia, M.2
Frey, E.3
-
62
-
-
84961904331
-
Challenges in microbial ecology: Building predictive understand- ing of community function and dynamics
-
Widder, S., Allen, R. J., Pfeiffer, T., Curtis, T. P., Wiuf, C., Sloan, W. T., Cordero, O. X., Brown, S. P., Momeni, B., and Shou, W. et al. 2016, Challenges in microbial ecology: building predictive understand- ing of community function and dynamics ISME J. 10, 2557-2568 10.1038/ismej.2016.45
-
(2016)
ISME J.
, vol.10
, pp. 2557-2568
-
-
Widder, S.1
Allen, R.J.2
Pfeiffer, T.3
Curtis, T.P.4
Wiuf, C.5
Sloan, W.T.6
Cordero, O.X.7
Brown, S.P.8
Momeni, B.9
Shou, W.10
-
63
-
-
84963568291
-
Genetic circuit design automation
-
Nielsen, A. A., Der, B. S., Shin, J., Vaidyanathan, P., Paralanov, V., Strychalski, E. A., Ross, D., Densmore, D., and Voigt, C. A. (2016) Genetic circuit design automation Science 352, aac7341 10.1126/science.aac7341
-
(2016)
Science
, vol.352
, pp. aac7341
-
-
Nielsen, A.A.1
Der, B.S.2
Shin, J.3
Vaidyanathan, P.4
Paralanov, V.5
Strychalski, E.A.6
Ross, D.7
Densmore, D.8
Voigt, C.A.9
-
64
-
-
0034688173
-
A synthetic oscillatory network of transcriptional regulators
-
Elowitz, M. B. and Leibler, S. (2000) A synthetic oscillatory network of transcriptional regulators Nature 403, 335-338 10.1038/35002125
-
(2000)
Nature
, vol.403
, pp. 335-338
-
-
Elowitz, M.B.1
Leibler, S.2
-
65
-
-
23444461901
-
Advances in synthetic biology: On the path from prototypes to applications
-
McDaniel, R. and Weiss, R. (2005) Advances in synthetic biology: on the path from prototypes to applications Curr. Opin. Biotechnol. 16, 476-483 10.1016/j.copbio.2005.07.002
-
(2005)
Curr. Opin. Biotechnol.
, vol.16
, pp. 476-483
-
-
McDaniel, R.1
Weiss, R.2
-
66
-
-
84956857435
-
Engineering Synthetic Gene Circuits in Living Cells with CRISPR Technology
-
Jusiak, B., Cleto, S., Perez-Pinera, P., and Lu, T. K. (2016) Engineering Synthetic Gene Circuits in Living Cells with CRISPR Technology Trends Biotechnol. 34, 535-547 10.1016/j.tibtech.2015.12.014
-
(2016)
Trends Biotechnol.
, vol.34
, pp. 535-547
-
-
Jusiak, B.1
Cleto, S.2
Perez-Pinera, P.3
Lu, T.K.4
-
67
-
-
84909963314
-
Resource Toehold Switches: De-Novo-Designed Regulators of Gene Expression
-
Green, A. a, Silver, P. a, Collins, J. J., and Yin, P. (2014) Resource Toehold Switches: De-Novo-Designed Regulators of Gene Expression Cell 159, 925-939 10.1016/j.cell.2014.10.002
-
(2014)
Cell
, vol.159
, pp. 925-939
-
-
Green, A.A.1
Silver, P.A.2
Collins, J.J.3
Yin, P.4
-
68
-
-
0032644351
-
Fully implicit finite differences methods for two-dimensional diffusion with a non-local boundary condition
-
Dehghan, M. (1999) Fully implicit finite differences methods for two-dimensional diffusion with a non-local boundary condition J. Compuational Appl. Math. 106, 255-269 10.1016/S0377-0427(99)00065-5
-
(1999)
J. Compuational Appl. Math.
, vol.106
, pp. 255-269
-
-
Dehghan, M.1
-
69
-
-
84975297281
-
Sharing structure and function in biological design with SBOL 2.0
-
Roehner, N., Beal, J., Clancy, K., Bartley, B., Misirli, G., Grünberg, R., Oberortner, E., Pocock, M., Bissell, M., and Madsen, C. et al. 2016, Sharing structure and function in biological design with SBOL 2.0 ACS Synth. Biol. 5, 498-506 10.1021/acssynbio.5b00215
-
(2016)
ACS Synth. Biol.
, vol.5
, pp. 498-506
-
-
Roehner, N.1
Beal, J.2
Clancy, K.3
Bartley, B.4
Misirli, G.5
Grünberg, R.6
Oberortner, E.7
Pocock, M.8
Bissell, M.9
Madsen, C.10
-
70
-
-
84949293235
-
At-risk" places: Inequities in the distribution of environmental stressors and prescription rates of mental health medications in Glasgow, Scotland
-
Maantay, J. and Maroko, A. (2015) At-risk" places: inequities in the distribution of environmental stressors and prescription rates of mental health medications in Glasgow, Scotland Environ. Res. Lett. 10, 115003 10.1088/1748-9326/10/11/115003
-
(2015)
Environ. Res. Lett.
, vol.10
, pp. 115003
-
-
Maantay, J.1
Maroko, A.2
-
71
-
-
84926621227
-
Trees grow on money: Urban tree canopy cover and environmental justice
-
Schwarz, K., Fragkias, M., Boone, C. G., Zhou, W., McHale, M., Grove, J. M., O'Neil-Dunne, J., McFadden, J. P., Buckley, G. L., and Childers, D. et al. 2015, Trees grow on money: urban tree canopy cover and environmental justice PLoS One 10, e0122051 10.1371/journal.pone.0122051
-
(2015)
PLoS One
, vol.10
, pp. e0122051
-
-
Schwarz, K.1
Fragkias, M.2
Boone, C.G.3
Zhou, W.4
McHale, M.5
Grove, J.M.6
O'Neil-Dunne, J.7
McFadden, J.P.8
Buckley, G.L.9
Childers, D.10
-
72
-
-
33645055465
-
Spatial statistics for urban analysis: A review of techniques with examples
-
Páez, A. and Scott, D. M. (2005) Spatial statistics for urban analysis: a review of techniques with examples GeoJournal 61, 53-67 10.1007/s10708-005-0877-5
-
(2005)
GeoJournal
, vol.61
, pp. 53-67
-
-
Páez, A.1
Scott, D.M.2
-
73
-
-
0001182393
-
Islands of decay in seas of renewal: Housing policy and the resurgence of gentrification
-
Wyly, E. K. and Hammel, D. J. (1999) Islands of decay in seas of renewal: Housing policy and the resurgence of gentrification Hous. Policy Debate 10, 711-771
-
(1999)
Hous. Policy Debate
, vol.10
, pp. 711-771
-
-
Wyly, E.K.1
Hammel, D.J.2
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