Engineering yeast endosymbionts as a step toward the evolution of mitochondria

Proceedings of the National Academy of Sciences of the United States of America

Volumn 115, Issue 46, 2018, Pages 11796-11801

  Mehta, Angad P ^a   Supekova, Lubica ^a   Chen, Jian Hua ^b   Pestonjamasp, Kersi ^a   Webster, Paul ^c   Ko, Yeonjin ^a   Henderson, Scott C ^a   McDermott, Gerry ^b   Supek, Frantisek ^d   Schultz, Peter G ^a  

^a SCRIPPS RESEARCH INSTITUTE   (United States)

^b UNIVERSITY OF CALIFORNIA   (United States)

^c OAK CREST INSTITUTE OF SCIENCE   (United States)

^d GENOMICS INSTITUTE OF THE NOVARTIS RESEARCH FOUNDATION   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ADENINE NUCLEOTIDE TRANSLOCASE; ADENOSINE TRIPHOSPHATE; ADENOSINE TRIPHOSPHATE TRANSLOCASE; CARRIER PROTEIN; CYCLOOXYGENASE 2; GREEN FLUORESCENT PROTEIN; SNARE PROTEIN; THIAMINE; UNCLASSIFIED DRUG;

ARTICLE; AUXOTROPHY; BACTERIAL GROWTH; BIODEGRADATION; BIOENGINEERING; CARBON SOURCE; CHIMERA; CONTROLLED STUDY; COX2 GENE; ENDOSYMBIONT; ESCHERICHIA COLI; FLUORESCENCE MICROSCOPY; FUNGUS GROWTH; FUNGUS MUTANT; GENE DELETION; HOST PATHOGEN INTERACTION; LYSOSOME; MITOCHONDRIAL GENOME; MOLECULAR EVOLUTION; NONHUMAN; PRIORITY JOURNAL; PROTEIN EXPRESSION; SACCHAROMYCES CEREVISIAE; X-RAY TOMOGRAPHY; AMINO ACID SEQUENCE; BIOLOGICAL MODEL; EVOLUTION; GENETICS; METABOLISM; MITOCHONDRION; PROCEDURES; SYMBIOSIS;

ADENOSINE TRIPHOSPHATE; AMINO ACID SEQUENCE; BIOENGINEERING; BIOLOGICAL EVOLUTION; ESCHERICHIA COLI; MITOCHONDRIA; MODELS, BIOLOGICAL; SACCHAROMYCES CEREVISIAE; SYMBIOSIS; THIAMINE;

EID: 85056495148     PISSN: 00278424     EISSN: 10916490     Source Type: Journal    
DOI: 10.1073/pnas.1813143115     Document Type: Article

References (34)

1. Margulis L (1970) Origin of Eukaryotic Cells: Evidence and Research Implications for a Theory of the Origin and Evolution of Microbial, Plant and Animal Cells on the Precambrian Earth (Yale Univ Press, New Haven, CT).
2. Kutschera U, Niklas KJ (2004) The modern theory of biological evolution: An expanded synthesis. Naturwissenschaften 91:255–276.
3. Gray MW (2012) Mitochondrial evolution. Cold Spring Harb Perspect Biol 4:a011403.
4. Archibald JM (2015) Endosymbiosis and eukaryotic cell evolution. Curr Biol 25:R911–R921.
5. Javaux EJ, Knoll AH, Walter MR (2001) Morphological and ecological complexity in early eukaryotic ecosystems. Nature 412:66–69.
6. Williams KP, Sobral BW, Dickerman AW (2007) A robust species tree for the alphaproteobacteria. J Bacteriol 189:4578–4586.
7. Martijn J, Vosseberg J, Guy L, Offre P, Ettema TJG (2018) Deep mitochondrial origin outside the sampled alphaproteobacteria. Nature 557:101–105.
8. Zaremba-Niedzwiedzka K, et al. (2017) Asgard archaea illuminate the origin of eukaryotic cellular complexity. Nature 541:353–358.
9. Wang Z, Wu M (2014) Phylogenomic reconstruction indicates mitochondrial ancestor was an energy parasite. PLoS One 9:e110685.
10. Andersson SG, et al. (1998) The genome sequence of Rickettsia prowazekii and the origin of mitochondria. Nature 396:133–140.
11. Ball SG, Bhattacharya D, Weber AP (2016) EVOLUTION. Pathogen to powerhouse. Science 351:659–660.
12. Kawasaki T, Nakata T, Nose Y (1968) Genetic mapping with a thiamine-requiring auxotroph of Escherichia coli K-12 defective in thiamine phosphate pyrophosphor-ylase. J Bacteriol 95:1483–1485.
13. Begley TP, et al. (1999) Thiamin biosynthesis in prokaryotes. Arch Microbiol 171:293–300.
14. Schmitz-Esser S, et al. (2004) ATP/ADP translocases: A common feature of obligate intracellular amoebal symbionts related to Chlamydiae and Rickettsiae. J Bacteriol 186:683–691.
15. Karas BJ, et al. (2014) Transferring whole genomes from bacteria to yeast spheroplasts using entire bacterial cells to reduce DNA shearing. Nat Protoc 9:743–750.
16. Lartigue C, et al. (2009) Creating bacterial strains from genomes that have been cloned and engineered in yeast. Science 325:1693–1696.
17. Sulo P, Griač P, Klobucníková V, Kovác L (1989) A method for the efficient transfer of isolated mitochondria into yeast protoplasts. Curr Genet 15:1–6.
18. Traba J, Satrústegui J, del Arco A (2009) Transport of adenine nucleotides in the mitochondria of Saccharomyces cerevisiae: Interactions between the ADP/ATP carriers and the ATP-Mg/Pi carrier. Mitochondrion 9:79–85.
19. Supekova L, Supek F, Greer JE, Schultz PG (2010) A single mutation in the first transmembrane domain of yeast COX2 enables its allotopic expression. Proc Natl Acad Sci USA 107:5047–5052.
20. Paumet F, et al. (2009) Intracellular bacteria encode inhibitory SNARE-like proteins. PLoS One 4:e7375.
21. Delevoye C, et al. (2008) SNARE protein mimicry by an intracellular bacterium. PLoS Pathog 4:e1000022.
22. Wesolowski J, Paumet F (2010) SNARE motif: A common motif used by pathogens to manipulate membrane fusion. Virulence 1:319–324.
23. Martin WF, Tielens AGM, Mentel M, Garg SG, Gould SB (2017) The physiology of phagocytosis in the context of mitochondrial origin. Microbiol Mol Biol Rev 81: e00008–e00017.
24. Delevoye C, Nilges M, Dautry-Varsat A, Subtil A (2004) Conservation of the biochemical properties of IncA from Chlamydia trachomatis and Chlamydia caviae: Oligomerization of IncA mediates interaction between facing membranes. J Biol Chem 279:46896–46906.
25. Prasad R, Goffeau A (2012) Yeast ATP-binding cassette transporters conferring mul-tidrug resistance. Annu Rev Microbiol 66:39–63.
26. Wesolowski J, et al. (2017) Chlamydia hijacks ARF GTPases to coordinate microtubule posttranslational modifications and Golgi complex positioning. MBio 8:e02280-16.
27. Tkacz JS, Cybulska EB, Lampen JO (1971) Specific staining of wall mannan in yeast cells with fluorescein-conjugated concanavalin A. J Bacteriol 105:1–5.
28. Schaudinn C, et al. (2009) Imaging of endodontic biofilms by combined microscopy (FISH/cLSM–SEM). J Microsc 235:124–127.
29. Ollagnier-de Choudens S, Loiseau L, Sanakis Y, Barras F, Fontecave M (2005) Quinolinate synthetase, an iron-sulfur enzyme in NAD biosynthesis. FEBS Lett 579:3737–3743.
30. Parkinson DY, et al. (2013) Nanoimaging cells using soft X-ray tomography. Nanoimaging (Springer, New York), pp 457–481.
31. McDermott G, et al. (2012) Visualizing and quantifying cell phenotype using soft X-ray tomography. BioEssays 34:320–327.
32. Pryor PR, et al. (2004) Combinatorial SNARE complexes with VAMP7 or VAMP8 define different late endocytic fusion events. EMBO Rep 5:590–595.
33. Martin W, Müller M (1998) The hydrogen hypothesis for the first eukaryote. Nature 392:37–41.
34. Sousa FL, Neukirchen S, Allen JF, Lane N, Martin WF (2016) Lokiarchaeon is hydrogen dependent. Nat Microbiol 1:16034.