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Volumn 111, Issue 20, 2014, Pages

Syntrophic exchange in synthetic microbial communities

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACID; ARGININE; AROMATIC COMPOUND; ISOLEUCINE; LYSINE; METHIONINE;

EID: 84901049717     PISSN: 00278424     EISSN: 10916490     Source Type: Journal    
DOI: 10.1073/pnas.1405641111     Document Type: Article
Times cited : (424)

References (40)
  • 1
    • 49049105130 scopus 로고    scopus 로고
    • Engineering microbial consortia: A new frontier in synthetic biology
    • Brenner K, You L, Arnold FH (2008) Engineering microbial consortia: A new frontier in synthetic biology. Trends Biotechnol 26(9):483-489.
    • (2008) Trends Biotechnol , vol.26 , Issue.9 , pp. 483-489
    • Brenner, K.1    You, L.2    Arnold, F.H.3
  • 2
    • 84865759667 scopus 로고    scopus 로고
    • Engineering ecosystems and synthetic ecologies
    • Mee MT, Wang HH (2012) Engineering ecosystems and synthetic ecologies. Mol Biosyst 8(10):2470-2483.
    • (2012) Mol Biosyst , vol.8 , Issue.10 , pp. 2470-2483
    • Mee, M.T.1    Wang, H.H.2
  • 3
    • 84867198212 scopus 로고    scopus 로고
    • Towards synthetic microbial consortia for bioprocessing
    • Shong J, Jimenez Diaz MR, Collins CH (2012) Towards synthetic microbial consortia for bioprocessing. Curr Opin Biotechnol 23(5):798-802.
    • (2012) Curr Opin Biotechnol , vol.23 , Issue.5 , pp. 798-802
    • Shong, J.1    Jimenez Diaz, M.R.2    Collins, C.H.3
  • 4
    • 84883326386 scopus 로고    scopus 로고
    • Design and characterization of synthetic fungal-bacterial consortia for direct production of isobutanol from cellulosic biomass
    • Minty JJ, et al. (2013) Design and characterization of synthetic fungal-bacterial consortia for direct production of isobutanol from cellulosic biomass. Proc Natl Acad Sci USA 110(36):14592-14597.
    • (2013) Proc Natl Acad Sci USA , vol.110 , Issue.36 , pp. 14592-14597
    • Minty, J.J.1
  • 5
    • 70149113922 scopus 로고    scopus 로고
    • Synthesis of methyl halides from biomass using engineered microbes
    • Bayer TS, et al. (2009) Synthesis of methyl halides from biomass using engineered microbes. J Am Chem Soc 131(18):6508-6515.
    • (2009) J Am Chem Soc , vol.131 , Issue.18 , pp. 6508-6515
    • Bayer, T.S.1
  • 6
    • 84855440933 scopus 로고    scopus 로고
    • A sensing array of radically coupled genetic biopixels
    • Prindle A, et al. (2012) A sensing array of radically coupled genetic biopixels.. Nature 481(7379):39-44.
    • (2012) Nature , vol.481 , Issue.7379 , pp. 39-44
    • Prindle, A.1
  • 7
    • 80051910411 scopus 로고    scopus 로고
    • Engineering microbes to sense and eradicate Pseudomonas aeruginosa, a human pathogen
    • Saeidi N, et al. (2011) Engineering microbes to sense and eradicate Pseudomonas aeruginosa, a human pathogen. Mol Syst Biol 7:521.
    • (2011) Mol Syst Biol , vol.7 , pp. 521
    • Saeidi, N.1
  • 8
    • 77954920911 scopus 로고    scopus 로고
    • Engineered bacterial communication prevents Vibrio cholerae virulence in an infant mouse model
    • Duan F, March JC (2010) Engineered bacterial communication prevents Vibrio cholerae virulence in an infant mouse model. Proc Natl Acad Sci USA 107(25): 11260-11264.
    • (2010) Proc Natl Acad Sci USA , vol.107 , Issue.25 , pp. 11260-11264
    • Duan, F.1    March, J.C.2
  • 9
    • 80051978497 scopus 로고    scopus 로고
    • An interdependent metabolic patchwork in the nested symbiosis of mealybugs
    • McCutcheon JP, von Dohlen CD (2011) An interdependent metabolic patchwork in the nested symbiosis of mealybugs. Curr Biol 21(16):1366-1372.
    • (2011) Curr Biol , vol.21 , Issue.16 , pp. 1366-1372
    • McCutcheon, J.P.1    Von Dohlen, C.D.2
  • 10
    • 33745208719 scopus 로고    scopus 로고
    • Metabolic complementarity and genomics of the dual bacterial symbiosis of sharpshooters
    • Wu D, et al. (2006) Metabolic complementarity and genomics of the dual bacterial symbiosis of sharpshooters. PLoS Biol 4(6):e188.
    • (2006) PLoS Biol , vol.4 , Issue.6
    • Wu, D.1
  • 11
  • 12
    • 33846936445 scopus 로고    scopus 로고
    • Synthetic cooperation in engineered yeast populations
    • Shou W, Ram S, Vilar JM (2007) Synthetic cooperation in engineered yeast populations. Proc Natl Acad Sci USA 104(6):1877-1882.
    • (2007) Proc Natl Acad Sci USA , vol.104 , Issue.6 , pp. 1877-1882
    • Shou, W.1    Ram, S.2    Vilar, J.M.3
  • 13
    • 78349245948 scopus 로고    scopus 로고
    • Novel cooperation experimentally evolved between species
    • Harcombe W (2010) Novel cooperation experimentally evolved between species. Evolution 64(7):2166-2172.
    • (2010) Evolution , vol.64 , Issue.7 , pp. 2166-2172
    • Harcombe, W.1
  • 14
    • 77956415336 scopus 로고    scopus 로고
    • Emergent cooperation in microbial metabolism
    • Wintermute EH, Silver PA (2010) Emergent cooperation in microbial metabolism. Mol Syst Biol 6:407.
    • (2010) Mol Syst Biol , vol.6 , pp. 407
    • Wintermute, E.H.1    Silver, P.A.2
  • 15
    • 84859123293 scopus 로고    scopus 로고
    • A programmable Escherichia coli consortium via tunable symbiosis
    • Kerner A, Park J, Williams A, Lin XN (2012) A programmable Escherichia coli consortium via tunable symbiosis. PLoS One 7(3):e34032.
    • (2012) PLoS One , vol.7 , Issue.3
    • Kerner, A.1    Park, J.2    Williams, A.3    Lin, X.N.4
  • 16
    • 84899480571 scopus 로고    scopus 로고
    • Fitness and stability of obligate cross-feeding interactions that emerge upon gene loss in bacteria
    • ismej.2013.211
    • Pande S, et al. (2013) Fitness and stability of obligate cross-feeding interactions that emerge upon gene loss in bacteria. ISME J, 10.1038/ismej.2013.211.
    • (2013) ISME J , vol.10 , pp. 1038
    • Pande, S.1
  • 17
    • 58149458887 scopus 로고    scopus 로고
    • Population dynamics constrain the cooperative evolution of cross-feeding
    • Bull JJ, Harcombe WR (2009) Population dynamics constrain the cooperative evolution of cross-feeding. PLoS One 4(1):e4115.
    • (2009) PLoS One , vol.4 , Issue.1
    • Bull, J.J.1    Harcombe, W.R.2
  • 18
    • 79955663156 scopus 로고    scopus 로고
    • Evolution of cooperative cross-feeding could be less challenging than originally thought
    • Estrela S, Gudelj I (2010) Evolution of cooperative cross-feeding could be less challenging than originally thought. PLoS One 5(11):e14121.
    • (2010) PLoS One , vol.5 , Issue.11
    • Estrela, S.1    Gudelj, I.2
  • 19
    • 33947276100 scopus 로고    scopus 로고
    • Metabolic modeling of a mutualistic microbial community
    • Stolyar S, et al. (2007) Metabolic modeling of a mutualistic microbial community. Mol Syst Biol 3:92.
    • (2007) Mol Syst Biol , vol.3 , pp. 92
    • Stolyar, S.1
  • 20
    • 84901067629 scopus 로고    scopus 로고
    • Metabolic proximity in the order of colonization of a microbial community
    • Mazumdar V, Amar S, Segr D (2013) Metabolic proximity in the order of colonization of a microbial community. PLoS One 8(10):e77617.
    • (2013) PLoS One , vol.8 , Issue.10
    • Mazumdar, V.1    Amar, S.2    Segr, D.3
  • 21
    • 78649677586 scopus 로고    scopus 로고
    • Environments that induce synthetic microbial ecosystems
    • Klitgord N, Segr D (2010) Environments that induce synthetic microbial ecosystems. PLoS Comput Biol 6(11):e1001002.
    • (2010) PLoS Comput Biol , vol.6 , Issue.11
    • Klitgord, N.1    Segr, D.2
  • 22
    • 77950831062 scopus 로고    scopus 로고
    • Emergence of spatial structure in cell groups and the evolution of cooperation
    • Nadell CD, Foster KR, Xavier JB (2010) Emergence of spatial structure in cell groups and the evolution of cooperation. PLoS Comput Biol 6(3):e1000716.
    • (2010) PLoS Comput Biol , vol.6 , Issue.3
    • Nadell, C.D.1    Foster, K.R.2    Xavier, J.B.3
  • 23
    • 78649851616 scopus 로고    scopus 로고
    • Dynamics in the mixed microbial concourse
    • Wintermute EH, Silver PA (2010) Dynamics in the mixed microbial concourse. Genes Dev 24(23):2603-2614.
    • (2010) Genes Dev , vol.24 , Issue.23 , pp. 2603-2614
    • Wintermute, E.H.1    Silver, P.A.2
  • 24
    • 0037133671 scopus 로고    scopus 로고
    • Metabolic efficiency and amino acid composition in the proteomes of Escherichia coli and Bacillus subtilis
    • Akashi H, Gojobori T (2002) Metabolic efficiency and amino acid composition in the proteomes of Escherichia coli and Bacillus subtilis. Proc Natl Acad Sci USA 99(6): 3695-3700.
    • (2002) Proc Natl Acad Sci USA , vol.99 , Issue.6 , pp. 3695-3700
    • Akashi, H.1    Gojobori, T.2
  • 25
    • 20444412257 scopus 로고    scopus 로고
    • Effects of deregulation of methionine biosynthesis on methionine excretion in Escherichia coli
    • Usuda Y, Kurahashi O (2005) Effects of deregulation of methionine biosynthesis on methionine excretion in Escherichia coli. Appl Environ Microbiol 71(6):3228-3234.
    • (2005) Appl Environ Microbiol , vol.71 , Issue.6 , pp. 3228-3234
    • Usuda, Y.1    Kurahashi, O.2
  • 26
    • 0033006992 scopus 로고    scopus 로고
    • The novel transmembrane Escherichia coli proteins involved in the amino acid efflux
    • Zakataeva NP, Aleshin VV, Tokmakova IL, Troshin PV, Livshits VA (1999) The novel transmembrane Escherichia coli proteins involved in the amino acid efflux. FEBS Lett 452(3):228-232.
    • (1999) FEBS Lett , vol.452 , Issue.3 , pp. 228-232
    • Zakataeva, N.P.1    Aleshin, V.V.2    Tokmakova, I.L.3    Troshin, P.V.4    Livshits, V.A.5
  • 27
    • 84861898310 scopus 로고    scopus 로고
    • IMG: The Integrated Microbial Genomes database and comparative analysis system
    • Database issue
    • Markowitz VM, et al. (2012) IMG: The Integrated Microbial Genomes database and comparative analysis system. Nucleic Acids Res 40(Database issue):D115-D122.
    • (2012) Nucleic Acids Res , vol.40
    • Markowitz, V.M.1
  • 28
    • 79960939957 scopus 로고    scopus 로고
    • Ecosystems biology of microbial metabolism
    • Klitgord N, Segr D (2011) Ecosystems biology of microbial metabolism. Curr Opin Biotechnol 22(4):541-546.
    • (2011) Curr Opin Biotechnol , vol.22 , Issue.4 , pp. 541-546
    • Klitgord, N.1    Segr, D.2
  • 29
    • 24044527469 scopus 로고    scopus 로고
    • The yeaS (leuE) gene of Escherichia coli encodes an exporter of leucine, and the Lrp protein regulates its expression
    • Kutukova EA, et al. (2005) The yeaS (leuE) gene of Escherichia coli encodes an exporter of leucine, and the Lrp protein regulates its expression. FEBS Lett 579(21): 4629-4634.
    • (2005) FEBS Lett , vol.579 , Issue.21 , pp. 4629-4634
    • Kutukova, E.A.1
  • 30
    • 34548810823 scopus 로고    scopus 로고
    • YddG from Escherichia coli promotes export of aromatic amino acids
    • Doroshenko V, et al. (2007) YddG from Escherichia coli promotes export of aromatic amino acids. FEMS Microbiol Lett 275(2):312-318.
    • (2007) FEMS Microbiol Lett , vol.275 , Issue.2 , pp. 312-318
    • Doroshenko, V.1
  • 31
    • 2442667786 scopus 로고    scopus 로고
    • Evidence for an arginine exporter encoded by yggA (argO) that is regulated by the LysR-type transcriptional regulator ArgP in Escherichia coli
    • Nandineni MR, Gowrishankar J (2004) Evidence for an arginine exporter encoded by yggA (argO) that is regulated by the LysR-type transcriptional regulator ArgP in Escherichia coli. J Bacteriol 186(11):3539-3546.
    • (2004) J Bacteriol , vol.186 , Issue.11 , pp. 3539-3546
    • Nandineni, M.R.1    Gowrishankar, J.2
  • 32
    • 79960078426 scopus 로고    scopus 로고
    • Inducible L-alanine exporter encoded by the novel gene ygaW (alaE) in Escherichia coli
    • Hori H, et al. (2011) Inducible L-alanine exporter encoded by the novel gene ygaW (alaE) in Escherichia coli. Appl Environ Microbiol 77(12):4027-4034.
    • (2011) Appl Environ Microbiol , vol.77 , Issue.12 , pp. 4027-4034
    • Hori, H.1
  • 33
    • 0029818343 scopus 로고    scopus 로고
    • A new type of transporter with a new type of cellular function: L-lysine export from Corynebacterium glutamicum
    • Vrljic M, Sahm H, Eggeling L (1996) A new type of transporter with a new type of cellular function: L-lysine export from Corynebacterium glutamicum. Mol Microbiol 22(5):815-826.
    • (1996) Mol Microbiol , vol.22 , Issue.5 , pp. 815-826
    • Vrljic, M.1    Sahm, H.2    Eggeling, L.3
  • 34
    • 0036299777 scopus 로고    scopus 로고
    • Export of L-isoleucine from Corynebacterium glutamicum: A two-gene-encoded member of a new translocator family
    • Kennerknecht N, et al. (2002) Export of L-isoleucine from Corynebacterium glutamicum: A two-gene-encoded member of a new translocator family. J Bacteriol 184(14):3947-3956.
    • (2002) J Bacteriol , vol.184 , Issue.14 , pp. 3947-3956
    • Kennerknecht, N.1
  • 35
    • 0028338389 scopus 로고
    • Permeability of membranes to amino acids and modified amino acids: Mechanisms involved in translocation
    • Chakrabarti AC (1994) Permeability of membranes to amino acids and modified amino acids: Mechanisms involved in translocation. Amino Acids 6(3):213-229.
    • (1994) Amino Acids , vol.6 , Issue.3 , pp. 213-229
    • Chakrabarti, A.C.1
  • 36
    • 79959855078 scopus 로고    scopus 로고
    • Predicting a human gut microbiotas response to diet in gnotobiotic mice
    • Faith JJ, McNulty NP, Rey FE, Gordon JI (2011) Predicting a human gut microbiotas response to diet in gnotobiotic mice. Science 333(6038):101-104.
    • (2011) Science , vol.333 , Issue.6038 , pp. 101-104
    • Faith, J.J.1    McNulty, N.P.2    Rey, F.E.3    Gordon, J.I.4
  • 37
    • 68949161807 scopus 로고    scopus 로고
    • Programming cells by multiplex genome engineering and accelerated evolution
    • Wang HH, et al. (2009) Programming cells by multiplex genome engineering and accelerated evolution. Nature 460(7257):894-898.
    • (2009) Nature , vol.460 , Issue.7257 , pp. 894-898
    • Wang, H.H.1
  • 38
    • 0034705144 scopus 로고    scopus 로고
    • An efficient recombination system for chromosome engineering in Escherichia coli
    • Yu D, et al. (2000) An efficient recombination system for chromosome engineering in Escherichia coli. Proc Natl Acad Sci USA 97(11):5978-5983.
    • (2000) Proc Natl Acad Sci USA , vol.97 , Issue.11 , pp. 5978-5983
    • Yu, D.1
  • 39
    • 84891813947 scopus 로고    scopus 로고
    • The silva and all-species living tree project (ltp) taxonomic frameworks
    • Database issue
    • Yilmaz P, et al. (2014) The SILVA and All-species Living Tree Project (LTP) taxonomic frameworks. Nucleic Acids Res 42(Database issue):D643-D648.
    • (2014) Nucleic Acids Res , vol.42
    • Yilmaz, P.1
  • 40
    • 79960004119 scopus 로고    scopus 로고
    • Interactive tree of life v2: Online annotation and display of phylogenetic trees made easy
    • Web Server issue
    • Letunic I, Bork P (2011) Interactive Tree of Life v2: Online annotation and display of phylogenetic trees made easy. Nucleic Acids Res 39(Web Server issue):W475-W478.
    • (2011) Nucleic Acids Res , vol.39
    • Letunic, I.1    Bork, P.2


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