-
1
-
-
84880758753
-
Duck liver-associated outbreak of Campylobacteriosis among humans, United Kingdom, 2011
-
Abid M, Wimalarathna H, Mills J, Saldana L, Pang W, Richardson JF, Maiden MC and McCarthy ND, 2013. Duck liver-associated outbreak of Campylobacteriosis among humans, United Kingdom, 2011. Emerg Infect Dis, 19, 1310–1313.
-
(2013)
Emerg Infect Dis
, vol.19
, pp. 1310-1313
-
-
Abid, M.1
Wimalarathna, H.2
Mills, J.3
Saldana, L.4
Pang, W.5
Richardson, J.F.6
Maiden, M.C.7
McCarthy, N.D.8
-
2
-
-
0029898865
-
A surfeit of YATMs?
-
Achtman M, 1996. A surfeit of YATMs? J Clin Microbiol, 34, 1870.
-
(1996)
J Clin Microbiol
, vol.34
, pp. 1870
-
-
Achtman, M.1
-
3
-
-
43849089834
-
Microbial diversity and the genetic nature of microbial species
-
Achtman M and Wagner M, 2008. Microbial diversity and the genetic nature of microbial species. Nat Rev Microbiol, 6, 431–440.
-
(2008)
Nat Rev Microbiol
, vol.6
, pp. 431-440
-
-
Achtman, M.1
Wagner, M.2
-
4
-
-
84864059917
-
Multilocus sequence typing as a replacement for serotyping in Salmonella enterica
-
Achtman M, Wain J, Weill FX, Nair S, Zhou Z, Sangal V, Krauland MG, Hale JL, Harbottle H, Uesbeck A, Dougan G, Harrison LH and Brisse S, 2012. Multilocus sequence typing as a replacement for serotyping in Salmonella enterica. PLoS Pathog, 8, e1002776.
-
(2012)
PLoS Pathog
, vol.8
-
-
Achtman, M.1
Wain, J.2
Weill, F.X.3
Nair, S.4
Zhou, Z.5
Sangal, V.6
Krauland, M.G.7
Hale, J.L.8
Harbottle, H.9
Uesbeck, A.10
Dougan, G.11
Harrison, L.H.12
Brisse, S.13
-
5
-
-
25844441743
-
Ceftiofur-resistant Salmonella strains isolated from dairy farms represent multiple widely distributed subtypes that evolved by independent horizontal gene transfer
-
Alcaine SD, Sukhnanand SS, Warnick LD, Su WL, McGann P, McDonough P and Wiedmann M, 2005. Ceftiofur-resistant Salmonella strains isolated from dairy farms represent multiple widely distributed subtypes that evolved by independent horizontal gene transfer. Antimicrob Agents Chemother, 49, 4061–4067.
-
(2005)
Antimicrob Agents Chemother
, vol.49
, pp. 4061-4067
-
-
Alcaine, S.D.1
Sukhnanand, S.S.2
Warnick, L.D.3
Su, W.L.4
McGann, P.5
McDonough, P.6
Wiedmann, M.7
-
6
-
-
84873486628
-
On the evolutionary history, population genetics and diversity among isolates of Salmonella Enteritidis PFGE pattern JEGX01.0004
-
Allard MW, Luo Y, Strain E, Pettengill J, Timme R, Wang C, Li C, Keys CE, Zheng J, Stones R, Wilson MR, Musser SM and Brown EW, 2013. On the evolutionary history, population genetics and diversity among isolates of Salmonella Enteritidis PFGE pattern JEGX01.0004. PLoS One, 8, e55254.
-
(2013)
PLoS One
, vol.8
-
-
Allard, M.W.1
Luo, Y.2
Strain, E.3
Pettengill, J.4
Timme, R.5
Wang, C.6
Li, C.7
Keys, C.E.8
Zheng, J.9
Stones, R.10
Wilson, M.R.11
Musser, S.M.12
Brown, E.W.13
-
7
-
-
0018656345
-
Population biology of infectious diseases: Part I
-
Anderson RM and May RM, 1979. Population biology of infectious diseases: Part I. Nature, 280, 361–367.
-
(1979)
Nature
, vol.280
, pp. 361-367
-
-
Anderson, R.M.1
May, R.M.2
-
8
-
-
84859321828
-
Rapid and reliable detection of Shiga toxin-producing Escherichia coli by real-time multiplex PCR
-
Anklam KS, Kanankege KS, Gonzales TK, Kaspar CW and Dopfer D, 2012. Rapid and reliable detection of Shiga toxin-producing Escherichia coli by real-time multiplex PCR. J Food Prot, 75, 643–650.
-
(2012)
J Food Prot
, vol.75
, pp. 643-650
-
-
Anklam, K.S.1
Kanankege, K.S.2
Gonzales, T.K.3
Kaspar, C.W.4
Dopfer, D.5
-
9
-
-
84876054517
-
Salmonella source attribution based on microbial subtyping
-
Barco L, Barrucci F, Olsen JE and Ricci A, 2013. Salmonella source attribution based on microbial subtyping. Int J Food Microbiol, 163, 193–203.
-
(2013)
Int J Food Microbiol
, vol.163
, pp. 193-203
-
-
Barco, L.1
Barrucci, F.2
Olsen, J.E.3
Ricci, A.4
-
10
-
-
21144438933
-
Attributing illness to food
-
Batz MB, Doyle MP, Morris G, Jr., Painter J, Singh R, Tauxe RV, Taylor MR and Lo Fo Wong DM, 2005. Attributing illness to food. Emerg Infect Dis, 11, 993–999.
-
(2005)
Emerg Infect Dis
, vol.11
, pp. 993-999
-
-
Batz, M.B.1
Doyle, M.P.2
Morris, G.3
Painter, J.4
Singh, R.5
Tauxe, R.V.6
Taylor, M.R.7
Lo Fo Wong, D.M.8
-
11
-
-
0342378138
-
The record of horizontal gene transfer in Salmonella
-
Bäumler AJ, 1997. The record of horizontal gene transfer in Salmonella. Trends Microbiol, 5, 318–322.
-
(1997)
Trends Microbiol
, vol.5
, pp. 318-322
-
-
Bäumler, A.J.1
-
12
-
-
84875703277
-
Antimicrobial resistance and virulence: a successful or deleterious association in the bacterial world?
-
Beceiro A, Tomas M and Bou G, 2013. Antimicrobial resistance and virulence: a successful or deleterious association in the bacterial world? Clin Microbiol Rev, 26, 185–230.
-
(2013)
Clin Microbiol Rev
, vol.26
, pp. 185-230
-
-
Beceiro, A.1
Tomas, M.2
Bou, G.3
-
13
-
-
25844514206
-
Acid resistance variability among isolates of Salmonella enterica serovar Typhimurium DT104
-
Berk PA, Jonge R, Zwietering MH, Abee T and Kieboom J, 2005. Acid resistance variability among isolates of Salmonella enterica serovar Typhimurium DT104. J Appl Microbiol, 99, 859–866.
-
(2005)
J Appl Microbiol
, vol.99
, pp. 859-866
-
-
Berk, P.A.1
Jonge, R.2
Zwietering, M.H.3
Abee, T.4
Kieboom, J.5
-
14
-
-
70349772770
-
Drug-resistant Salmonella Typhimurium DT 120: use of PFGE and MLVA in a putative international outbreak investigation
-
Best EL, Hampton MD, Ethelberg S, Liebana E, Clifton-Hadley FA and Threlfall EJ, 2009. Drug-resistant Salmonella Typhimurium DT 120: use of PFGE and MLVA in a putative international outbreak investigation. Microb Drug Resist, 15, 133–138.
-
(2009)
Microb Drug Resist
, vol.15
, pp. 133-138
-
-
Best, E.L.1
Hampton, M.D.2
Ethelberg, S.3
Liebana, E.4
Clifton-Hadley, F.A.5
Threlfall, E.J.6
-
15
-
-
34547905002
-
Multiple-locus variable-number tandem repeat analysis of Salmonella enterica subsp. enterica serovar Typhimurium: comparison of isolates from pigs, poultry and cases of human gastroenteritis
-
Best EL, Lindstedt BA, Cook A, Clifton Hadley FA, Threlfall EJ and Liebana E, 2007. Multiple-locus variable-number tandem repeat analysis of Salmonella enterica subsp. enterica serovar Typhimurium: comparison of isolates from pigs, poultry and cases of human gastroenteritis. J Appl Microbiol, 103, 565–572.
-
(2007)
J Appl Microbiol
, vol.103
, pp. 565-572
-
-
Best, E.L.1
Lindstedt, B.A.2
Cook, A.3
Clifton Hadley, F.A.4
Threlfall, E.J.5
Liebana, E.6
-
16
-
-
84887611866
-
Shiga toxin-producing Escherichia coli strains from cattle as a source of the Stx2a bacteriophages present in enteroaggregative Escherichia coli O104:H4 strains
-
Beutin L, Hammerl JA, Reetz J and Strauch E, 2013. Shiga toxin-producing Escherichia coli strains from cattle as a source of the Stx2a bacteriophages present in enteroaggregative Escherichia coli O104:H4 strains. Int J Med Microbiol, 303, 595–602.
-
(2013)
Int J Med Microbiol
, vol.303
, pp. 595-602
-
-
Beutin, L.1
Hammerl, J.A.2
Reetz, J.3
Strauch, E.4
-
18
-
-
80855128848
-
Whole-genome comparison of two Campylobacter jejuni isolates of the same sequence type reveals multiple loci of different ancestral lineage
-
Biggs PJ, Fearnhead P, Hotter G, Mohan V, Collins-Emerson J, Kwan E, Besser TE, Cookson A, Carter PE and French NP, 2011. Whole-genome comparison of two Campylobacter jejuni isolates of the same sequence type reveals multiple loci of different ancestral lineage. PLoS One, 6, e27121.
-
(2011)
PLoS One
, vol.6
-
-
Biggs, P.J.1
Fearnhead, P.2
Hotter, G.3
Mohan, V.4
Collins-Emerson, J.5
Kwan, E.6
Besser, T.E.7
Cookson, A.8
Carter, P.E.9
French, N.P.10
-
19
-
-
79953212962
-
Prevalence and characterization of non-O157 shiga toxin-producing Escherichia coli isolates from commercial ground beef in the United States
-
Bosilevac JM and Koohmaraie M, 2011. Prevalence and characterization of non-O157 shiga toxin-producing Escherichia coli isolates from commercial ground beef in the United States. Appl Environ Microbiol, 77, 2103–2112.
-
(2011)
Appl Environ Microbiol
, vol.77
, pp. 2103-2112
-
-
Bosilevac, J.M.1
Koohmaraie, M.2
-
20
-
-
33847075382
-
Comparison of multiple-locus variable-number tandem repeat analysis, pulsed-field gel electrophoresis, and phage typing for subtype analysis of Salmonella enterica serotype Enteritidis
-
Boxrud D, Pederson-Gulrud K, Wotton J, Medus C, Lyszkowicz E, Besser J and Bartkus JM, 2007. Comparison of multiple-locus variable-number tandem repeat analysis, pulsed-field gel electrophoresis, and phage typing for subtype analysis of Salmonella enterica serotype Enteritidis. J Clin Microbiol, 45, 536–543.
-
(2007)
J Clin Microbiol
, vol.45
, pp. 536-543
-
-
Boxrud, D.1
Pederson-Gulrud, K.2
Wotton, J.3
Medus, C.4
Lyszkowicz, E.5
Besser, J.6
Bartkus, J.M.7
-
21
-
-
84908509431
-
Source attribution of human campylobacteriosis in Denmark
-
Boysen L, Rosenquist H, Larsson JT, Nielsen EM, Sorensen G, Nordentoft S and Hald T, 2013. Source attribution of human campylobacteriosis in Denmark. Epidemiol Infect, 1–10.
-
(2013)
Epidemiol Infect
, pp. 1-10
-
-
Boysen, L.1
Rosenquist, H.2
Larsson, J.T.3
Nielsen, E.M.4
Sorensen, G.5
Nordentoft, S.6
Hald, T.7
-
22
-
-
85078384887
-
An outbreak of Salmonella Typhimurium infections in Denmark, Norway and Sweden, 2008
-
Bruun T, Soerensen G, Forshell LP, Jensen T, Nygard K, Kapperud G, Lindstedt BA, Wingstrand A, Petersen RF, Muller L, Kjelsoe C, Ivarsson S, Hjertqvist M, Lofdahl S and Ethelberg S, 2009. An outbreak of Salmonella Typhimurium infections in Denmark, Norway and Sweden, 2008. Eurosurveillance, 14 (1).
-
(2009)
Eurosurveillance
, vol.14
, Issue.1
-
-
Bruun, T.1
Soerensen, G.2
Forshell, L.P.3
Jensen, T.4
Nygard, K.5
Kapperud, G.6
Lindstedt, B.A.7
Wingstrand, A.8
Petersen, R.F.9
Muller, L.10
Kjelsoe, C.11
Ivarsson, S.12
Hjertqvist, M.13
Lofdahl, S.14
Ethelberg, S.15
-
23
-
-
80955166936
-
German outbreak of Escherichia coli O104:H4 associated with sprouts
-
Buchholz U, Bernard H, Werber D, Bohmer MM, Remschmidt C, Wilking H, Delere Y, an der Heiden M, Adlhoch C, Dreesman J, Ehlers J, Ethelberg S, Faber M, Frank C, Fricke G, Greiner M, Hohle M, Ivarsson S, Jark U, Kirchner M, Koch J, Krause G, Luber P, Rosner B, Stark K and Kuhne M, 2011. German outbreak of Escherichia coli O104:H4 associated with sprouts. N Engl J Med, 365, 1763–1770.
-
(2011)
N Engl J Med
, vol.365
, pp. 1763-1770
-
-
Buchholz, U.1
Bernard, H.2
Werber, D.3
Bohmer, M.M.4
Remschmidt, C.5
Wilking, H.6
Delere, Y.7
an der Heiden, M.8
Adlhoch, C.9
Dreesman, J.10
Ehlers, J.11
Ethelberg, S.12
Faber, M.13
Frank, C.14
Fricke, G.15
Greiner, M.16
Hohle, M.17
Ivarsson, S.18
Jark, U.19
Kirchner, M.20
Koch, J.21
Krause, G.22
Luber, P.23
Rosner, B.24
Stark, K.25
Kuhne, M.26
more..
-
24
-
-
84892552614
-
Molecular identification in monophasic and nonmotile variants of Salmonella enterica serovar Typhimurium
-
Bugarel M, Vignaud ML, Moury F, Fach P and Brisabois A, 2012. Molecular identification in monophasic and nonmotile variants of Salmonella enterica serovar Typhimurium. Microbiologyopen, 1, 481–489.
-
(2012)
Microbiologyopen
, vol.1
, pp. 481-489
-
-
Bugarel, M.1
Vignaud, M.L.2
Moury, F.3
Fach, P.4
Brisabois, A.5
-
25
-
-
84873727094
-
Phylogenetics and differentiation of Salmonella Newport lineages by whole genome sequencing
-
Cao G, Meng J, Strain E, Stones R, Pettengill J, Zhao S, McDermott P, Brown E and Allard M, 2013. Phylogenetics and differentiation of Salmonella Newport lineages by whole genome sequencing. PLoS One, 8, e55687.
-
(2013)
PLoS One
, vol.8
-
-
Cao, G.1
Meng, J.2
Strain, E.3
Stones, R.4
Pettengill, J.5
Zhao, S.6
McDermott, P.7
Brown, E.8
Allard, M.9
-
26
-
-
84880748808
-
Plasmids and the spread of resistance
-
Carattoli A, 2013. Plasmids and the spread of resistance. Int J Med Microbiol, 303, 298–304.
-
(2013)
Int J Med Microbiol
, vol.303
, pp. 298-304
-
-
Carattoli, A.1
-
27
-
-
0026529236
-
Coordinate regulation of virulence genes in Listeria monocytogenes requires the product of the prfA gene
-
Chakraborty T, Leimeister-Wachter M, Domann E, Hartl M, Goebel W, Nichterlein T and Notermans S, 1992. Coordinate regulation of virulence genes in Listeria monocytogenes requires the product of the prfA gene. J Bacteriol, 174, 568–574.
-
(1992)
J Bacteriol
, vol.174
, pp. 568-574
-
-
Chakraborty, T.1
Leimeister-Wachter, M.2
Domann, E.3
Hartl, M.4
Goebel, W.5
Nichterlein, T.6
Notermans, S.7
-
28
-
-
84877746920
-
Microbial variome database: point mutations, adaptive or not, in bacterial core genomes
-
Chattopadhyay S, Taub F, Paul S, Weissman SJ and Sokurenko EV, 2013. Microbial variome database: point mutations, adaptive or not, in bacterial core genomes. Mol Biol Evol, 30, 1465–1470.
-
(2013)
Mol Biol Evol
, vol.30
, pp. 1465-1470
-
-
Chattopadhyay, S.1
Taub, F.2
Paul, S.3
Weissman, S.J.4
Sokurenko, E.V.5
-
29
-
-
84876848287
-
Comprehensive assignment of roles for Salmonella Typhimurium genes in intestinal colonization of food-producing animals
-
Chaudhuri RR, Morgan E, Peters SE, Pleasance SJ, Hudson DL, Davies HM, Wang J, van Diemen PM, Buckley AM, Bowen AJ, Pullinger GD, Turner DJ, Langridge GC, Turner AK, Parkhill J, Charles IG, Maskell DJ and Stevens MP, 2013. Comprehensive assignment of roles for Salmonella Typhimurium genes in intestinal colonization of food-producing animals. PLoS Genet, 9, e1003456.
-
(2013)
PLoS Genet
, vol.9
-
-
Chaudhuri, R.R.1
Morgan, E.2
Peters, S.E.3
Pleasance, S.J.4
Hudson, D.L.5
Davies, H.M.6
Wang, J.7
van Diemen, P.M.8
Buckley, A.M.9
Bowen, A.J.10
Pullinger, G.D.11
Turner, D.J.12
Langridge, G.C.13
Turner, A.K.14
Parkhill, J.15
Charles, I.G.16
Maskell, D.J.17
Stevens, M.P.18
-
30
-
-
84880613469
-
Minimum core genome sequence typing of bacterial pathogens: a unified approach for clinical and public health microbiology
-
Chen C, Zhang W, Zheng H, Lan R, Wang H, Du P, Bai X, Ji S, Meng Q, Jin D, Liu K, Jing H, Ye C, Gao GF, Wang L, Gottschalk M and Xu J, 2013. Minimum core genome sequence typing of bacterial pathogens: a unified approach for clinical and public health microbiology. J Clin Microbiol, 51, 2582–2591.
-
(2013)
J Clin Microbiol
, vol.51
, pp. 2582-2591
-
-
Chen, C.1
Zhang, W.2
Zheng, H.3
Lan, R.4
Wang, H.5
Du, P.6
Bai, X.7
Ji, S.8
Meng, Q.9
Jin, D.10
Liu, K.11
Jing, H.12
Ye, C.13
Gao, G.F.14
Wang, L.15
Gottschalk, M.16
Xu, J.17
-
31
-
-
84878508099
-
Optimized Multilocus variable-number tandem-repeat analysis assay and its complementarity with pulsed-field gel electrophoresis and multilocus sequence typing for Listeria monocytogenes clone identification and surveillance
-
Chenal-Francisque V, Diancourt L, Cantinelli T, Passet V, Tran-Hykes C, Bracq-Dieye H, Leclercq A, Pourcel C, Lecuit M and Brisse S, 2013. Optimized Multilocus variable-number tandem-repeat analysis assay and its complementarity with pulsed-field gel electrophoresis and multilocus sequence typing for Listeria monocytogenes clone identification and surveillance. J Clin Microbiol, 51, 1868–1880.
-
(2013)
J Clin Microbiol
, vol.51
, pp. 1868-1880
-
-
Chenal-Francisque, V.1
Diancourt, L.2
Cantinelli, T.3
Passet, V.4
Tran-Hykes, C.5
Bracq-Dieye, H.6
Leclercq, A.7
Pourcel, C.8
Lecuit, M.9
Brisse, S.10
-
32
-
-
84870815005
-
Fighting outbreaks with bacterial genomics: case review and workflow proposal
-
Cheung MK and Kwan HS, 2012. Fighting outbreaks with bacterial genomics: case review and workflow proposal. Public Health Genomics, 15, 341–351.
-
(2012)
Public Health Genomics
, vol.15
, pp. 341-351
-
-
Cheung, M.K.1
Kwan, H.S.2
-
33
-
-
76449109369
-
Use of multiple-locus variable number tandem repeat analysis and phage typing for subtyping of Salmonella Enteritidis from sporadic human cases in the United States
-
Cho S, Whittam TS, Boxrud DJ, Bartkus JM, Rankin SC, Wilkins MJ, Somsel P, Downes FP, Musser KA, Root TP, Warnick LD, Wiedmann M and Saeed AM, 2010. Use of multiple-locus variable number tandem repeat analysis and phage typing for subtyping of Salmonella Enteritidis from sporadic human cases in the United States. J Appl Microbiol, 108, 859–867.
-
(2010)
J Appl Microbiol
, vol.108
, pp. 859-867
-
-
Cho, S.1
Whittam, T.S.2
Boxrud, D.J.3
Bartkus, J.M.4
Rankin, S.C.5
Wilkins, M.J.6
Somsel, P.7
Downes, F.P.8
Musser, K.A.9
Root, T.P.10
Warnick, L.D.11
Wiedmann, M.12
Saeed, A.M.13
-
34
-
-
0037234617
-
Subtyping of Salmonella enterica serotype Enteritidis strains by manual and automated PstI-SphI ribotyping
-
Clark CG, Kruk TM, Bryden L, Hirvi Y, Ahmed R and Rodgers FG, 2003. Subtyping of Salmonella enterica serotype Enteritidis strains by manual and automated PstI-SphI ribotyping. J Clin Microbiol, 41, 27–33.
-
(2003)
J Clin Microbiol
, vol.41
, pp. 27-33
-
-
Clark, C.G.1
Kruk, T.M.2
Bryden, L.3
Hirvi, Y.4
Ahmed, R.5
Rodgers, F.G.6
-
36
-
-
84880621689
-
Real-time genomic epidemiological evaluation of human Campylobacter isolates by use of whole-genome multilocus sequence typing
-
Cody AJ, McCarthy ND, Jansen van Rensburg M, Isinkaye T, Bentley SD, Parkhill J, Dingle KE, Bowler IC, Jolley KA and Maiden MC, 2013. Real-time genomic epidemiological evaluation of human Campylobacter isolates by use of whole-genome multilocus sequence typing. J Clin Microbiol, 51, 2526–2534.
-
(2013)
J Clin Microbiol
, vol.51
, pp. 2526-2534
-
-
Cody, A.J.1
McCarthy, N.D.2
Jansen van Rensburg, M.3
Isinkaye, T.4
Bentley, S.D.5
Parkhill, J.6
Dingle, K.E.7
Bowler, I.C.8
Jolley, K.A.9
Maiden, M.C.10
-
37
-
-
84868311394
-
Campylobacter sequence typing databases: applications and future prospects
-
Colles FM and Maiden MC, 2012. Campylobacter sequence typing databases: applications and future prospects. Microbiology, 158, 2695–2709.
-
(2012)
Microbiology
, vol.158
, pp. 2695-2709
-
-
Colles, F.M.1
Maiden, M.C.2
-
38
-
-
77954566298
-
Causes of outbreaks associated with drinking water in the United States from 1971 to 2006
-
Craun GF, Brunkard JM, Yoder JS, Roberts VA, Carpenter J, Wade T, Calderon RL, Roberts JM, Beach MJ and Roy SL, 2010. Causes of outbreaks associated with drinking water in the United States from 1971 to 2006. Clin Microbiol Rev, 23, 507–528.
-
(2010)
Clin Microbiol Rev
, vol.23
, pp. 507-528
-
-
Craun, G.F.1
Brunkard, J.M.2
Yoder, J.S.3
Roberts, V.A.4
Carpenter, J.5
Wade, T.6
Calderon, R.L.7
Roberts, J.M.8
Beach, M.J.9
Roy, S.L.10
-
39
-
-
85078377023
-
The infection biology of pig-associated Salmonella
-
Crayford G, Wigley P and Humphrey T, 2011. The infection biology of pig-associated Salmonella. 9th International Conference on the Epidemiology and Control of biological, chemical and physical hazards in pigs and pork (SafePork 2011), Maastricht, The Netherlands, 19-22 June 2011. 57–61.
-
(2011)
9th International Conference on the Epidemiology and Control of biological, chemical and physical hazards in pigs and pork (SafePork 2011), Maastricht, The Netherlands, 19-22 June 2011
, pp. 57-61
-
-
Crayford, G.1
Wigley, P.2
Humphrey, T.3
-
40
-
-
79955789399
-
Recent Experiences with Listeria monocytogenes in New Zealand and development of a food control risk-based strategy
-
Crerar SK, Castle M, Hassel S and Schumacher D, 2011. Recent Experiences with Listeria monocytogenes in New Zealand and development of a food control risk-based strategy. Food Control, 22(9), 1510–1512.
-
(2011)
Food Control
, vol.22
, Issue.9
, pp. 1510-1512
-
-
Crerar, S.K.1
Castle, M.2
Hassel, S.3
Schumacher, D.4
-
41
-
-
77950370926
-
Campylobacter jejuni: a brief overview on pathogenicity-associated factors and disease-mediating mechanisms
-
Dasti JI, Tareen AM, Lugert R, Zautner AE and Gross U, 2010. Campylobacter jejuni: a brief overview on pathogenicity-associated factors and disease-mediating mechanisms. Int J Med Microbiol, 300, 205–211.
-
(2010)
Int J Med Microbiol
, vol.300
, pp. 205-211
-
-
Dasti, J.I.1
Tareen, A.M.2
Lugert, R.3
Zautner, A.E.4
Gross, U.5
-
42
-
-
84875213609
-
The Bayesian microbial subtyping attribution model: robustness to prior information and a proposition
-
David JM, Guillemot D, Bemrah N, Thebault A, Brisabois A, Chemaly M, Weill FX, Sanders P and Watier L, 2012. The Bayesian microbial subtyping attribution model: robustness to prior information and a proposition. Risk Anal, 33, 397–408.
-
(2012)
Risk Anal
, vol.33
, pp. 397-408
-
-
David, J.M.1
Guillemot, D.2
Bemrah, N.3
Thebault, A.4
Brisabois, A.5
Chemaly, M.6
Weill, F.X.7
Sanders, P.8
Watier, L.9
-
43
-
-
84876744154
-
Attribution of the French human Salmonellosis cases to the main food-sources according to the type of surveillance data
-
David JM, Sanders P, Bemrah N, Granier SA, Denis M, Weill FX, Guillemot D and Watier L, 2013. Attribution of the French human Salmonellosis cases to the main food-sources according to the type of surveillance data. Prev Vet Med, 110, 12–27.
-
(2013)
Prev Vet Med
, vol.110
, pp. 12-27
-
-
David, J.M.1
Sanders, P.2
Bemrah, N.3
Granier, S.A.4
Denis, M.5
Weill, F.X.6
Guillemot, D.7
Watier, L.8
-
44
-
-
84878944413
-
Multidrug resistant Salmonella Java found in British broiler flocks
-
Davies R, Deuchande R, Larki L, Collins R and Irvine RM, 2013. Multidrug resistant Salmonella Java found in British broiler flocks. Vet Rec, 172, 617–618.
-
(2013)
Vet Rec
, vol.172
, pp. 617-618
-
-
Davies, R.1
Deuchande, R.2
Larki, L.3
Collins, R.4
Irvine, R.M.5
-
46
-
-
78649565669
-
Comparative genomics of the bacterial genus Listeria: Genome evolution is characterized by limited gene acquisition and limited gene loss
-
den Bakker HC, Cummings CA, Ferreira V, Vatta P, Orsi RH, Degoricija L, Barker M, Petrauskene O, Furtado MR and Wiedmann M, 2010. Comparative genomics of the bacterial genus Listeria: Genome evolution is characterized by limited gene acquisition and limited gene loss. BMC Genomics, 11, 688.
-
(2010)
BMC Genomics
, vol.11
, pp. 688
-
-
den Bakker, H.C.1
Cummings, C.A.2
Ferreira, V.3
Vatta, P.4
Orsi, R.H.5
Degoricija, L.6
Barker, M.7
Petrauskene, O.8
Furtado, M.R.9
Wiedmann, M.10
-
47
-
-
38749092252
-
Multinational Salmonella Paratyphi B variant Java (Salmonella Java) outbreak, August - December 2007
-
071222
-
Denny J, Threlfall J, Takkinen J, Lofdahl S, Westrell T, Varela C, Adak B, Boxall N, Ethelberg S, Torpdahl M, Straetemans M and van Pelt W, 2007. Multinational Salmonella Paratyphi B variant Java (Salmonella Java) outbreak, August - December 2007. Euro Surveill, 12, E071220 071222.
-
(2007)
Euro Surveill
, vol.12
-
-
Denny, J.1
Threlfall, J.2
Takkinen, J.3
Lofdahl, S.4
Westrell, T.5
Varela, C.6
Adak, B.7
Boxall, N.8
Ethelberg, S.9
Torpdahl, M.10
Straetemans, M.11
van Pelt, W.12
-
48
-
-
84880072806
-
Evolutionary Genomics of Salmonella enterica Subspecies
-
Desai PT, Porwollik S, Long F, Cheng P, Wollam A, Bhonagiri-Palsikar V, Hallsworth-Pepin K, Clifton SW, Weinstock GM and McClelland M, 2013. Evolutionary Genomics of Salmonella enterica Subspecies. MBio, 4.
-
(2013)
MBio
, pp. 4
-
-
Desai, P.T.1
Porwollik, S.2
Long, F.3
Cheng, P.4
Wollam, A.5
Bhonagiri-Palsikar, V.6
Hallsworth-Pepin, K.7
Clifton, S.W.8
Weinstock, G.M.9
McClelland, M.10
-
49
-
-
84867191551
-
Molecular characterization of Salmonella Enteritidis: comparison of an optimized multi-locus variable-number of tandem repeat analysis (MLVA) and pulsed-field gel electrophoresis
-
Dewaele I, Rasschaert G, Bertrand S, Wildemauwe C, Wattiau P, Imberechts H, Herman L, Ducatelle R, De Reu K and Heyndrickx M, 2012. Molecular characterization of Salmonella Enteritidis: comparison of an optimized multi-locus variable-number of tandem repeat analysis (MLVA) and pulsed-field gel electrophoresis. Foodborne Pathog Dis, 9, 885–895.
-
(2012)
Foodborne Pathog Dis
, vol.9
, pp. 885-895
-
-
Dewaele, I.1
Rasschaert, G.2
Bertrand, S.3
Wildemauwe, C.4
Wattiau, P.5
Imberechts, H.6
Herman, L.7
Ducatelle, R.8
De Reu, K.9
Heyndrickx, M.10
-
51
-
-
84872336795
-
Next-generation sequencing: the future of molecular genetics in poultry production and food safety
-
Diaz-Sanchez S, Hanning I, Pendleton S and D'Souza D, 2013. Next-generation sequencing: the future of molecular genetics in poultry production and food safety. Poult Sci, 92, 562–572.
-
(2013)
Poult Sci
, vol.92
, pp. 562-572
-
-
Diaz-Sanchez, S.1
Hanning, I.2
Pendleton, S.3
D'Souza, D.4
-
52
-
-
79960935954
-
Recombination and population structure in Salmonella enterica
-
Didelot X, Bowden R, Street T, Golubchik T, Spencer C, McVean G, Sangal V, Anjum MF, Achtman M, Falush D and Donnelly P, 2011. Recombination and population structure in Salmonella enterica. PLoS Genet, 7, e1002191.
-
(2011)
PLoS Genet
, vol.7
-
-
Didelot, X.1
Bowden, R.2
Street, T.3
Golubchik, T.4
Spencer, C.5
McVean, G.6
Sangal, V.7
Anjum, M.F.8
Achtman, M.9
Falush, D.10
Donnelly, P.11
-
53
-
-
77954143123
-
Impact of recombination on bacterial evolution
-
Didelot X and Maiden MC, 2010. Impact of recombination on bacterial evolution. Trends Microbiol, 18, 315–322.
-
(2010)
Trends Microbiol
, vol.18
, pp. 315-322
-
-
Didelot, X.1
Maiden, M.C.2
-
55
-
-
0036713924
-
Molecular characterization of Campylobacter jejuni clones: a basis for epidemiologic investigation
-
Dingle KE, Colles FM, Ure R, Wagenaar JA, Duim B, Bolton FJ, Fox AJ, Wareing DR and Maiden MC, 2002. Molecular characterization of Campylobacter jejuni clones: a basis for epidemiologic investigation. Emerg Infect Dis, 8, 949–955.
-
(2002)
Emerg Infect Dis
, vol.8
, pp. 949-955
-
-
Dingle, K.E.1
Colles, F.M.2
Ure, R.3
Wagenaar, J.A.4
Duim, B.5
Bolton, F.J.6
Fox, A.J.7
Wareing, D.R.8
Maiden, M.C.9
-
56
-
-
0035164634
-
Multilocus sequence typing system for Campylobacter jejuni
-
Dingle KE, Colles FM, Wareing DR, Ure R, Fox AJ, Bolton FE, Bootsma HJ, Willems RJ, Urwin R and Maiden MC, 2001. Multilocus sequence typing system for Campylobacter jejuni. J Clin Microbiol, 39, 14–23.
-
(2001)
J Clin Microbiol
, vol.39
, pp. 14-23
-
-
Dingle, K.E.1
Colles, F.M.2
Wareing, D.R.3
Ure, R.4
Fox, A.J.5
Bolton, F.E.6
Bootsma, H.J.7
Willems, R.J.8
Urwin, R.9
Maiden, M.C.10
-
57
-
-
2442449227
-
Genomic islands in pathogenic and environmental microorganisms
-
Dobrindt U, Hochhut B, Hentschel U and Hacker J, 2004. Genomic islands in pathogenic and environmental microorganisms. Nat Rev Microbiol, 2, 414–424.
-
(2004)
Nat Rev Microbiol
, vol.2
, pp. 414-424
-
-
Dobrindt, U.1
Hochhut, B.2
Hentschel, U.3
Hacker, J.4
-
58
-
-
3843117769
-
Differentiation of the major Listeria monocytogenes serovars by multiplex PCR
-
Doumith M, Buchrieser C, Glaser P, Jacquet C and Martin P, 2004. Differentiation of the major Listeria monocytogenes serovars by multiplex PCR. J Clin Microbiol, 42, 3819–3822.
-
(2004)
J Clin Microbiol
, vol.42
, pp. 3819-3822
-
-
Doumith, M.1
Buchrieser, C.2
Glaser, P.3
Jacquet, C.4
Martin, P.5
-
59
-
-
28644433704
-
Multicenter validation of a multiplex PCR assay for differentiating the major Listeria monocytogenes serovars 1/2a, 1/2b, 1/2c, and 4b: toward an international standard
-
Doumith M, Jacquet C, Gerner-Smidt P, Graves LM, Loncarevic S, Mathisen T, Morvan A, Salcedo C, Torpdahl M, Vazquez JA and Martin P, 2005. Multicenter validation of a multiplex PCR assay for differentiating the major Listeria monocytogenes serovars 1/2a, 1/2b, 1/2c, and 4b: toward an international standard. J Food Prot, 68, 2648–2650.
-
(2005)
J Food Prot
, vol.68
, pp. 2648-2650
-
-
Doumith, M.1
Jacquet, C.2
Gerner-Smidt, P.3
Graves, L.M.4
Loncarevic, S.5
Mathisen, T.6
Morvan, A.7
Salcedo, C.8
Torpdahl, M.9
Vazquez, J.A.10
Martin, P.11
-
62
-
-
55249093489
-
Scientific Opinion of the Panel on Biological Hazards on overview of methods for source attribution for human illness from food-borne microbiological hazards
-
EFSA (European Food Safety Authority), 2008. Scientific Opinion of the Panel on Biological Hazards on overview of methods for source attribution for human illness from food-borne microbiological hazards. The EFSA Journal 2008, 764, 1–43.
-
(2008)
The EFSA Journal 2008
, vol.764
, pp. 1-43
-
-
-
63
-
-
77953120710
-
Report on the availability of molecular typing methods for Salmonella, Campylobacter, verotoxigenic Escherichia coli, Listeria monocytogenes and Staphylococcus aureus isolates from food, animals and feedingstuffs in European Union Member States (and in some other reporting countries)
-
2009
-
EFSA (European Food Safety Authority), 2009. Report on the availability of molecular typing methods for Salmonella, Campylobacter, verotoxigenic Escherichia coli, Listeria monocytogenes and Staphylococcus aureus isolates from food, animals and feedingstuffs in European Union Member States (and in some other reporting countries). The EFSA Journal 2009, 272r, 1–52.
-
(2009)
The EFSA Journal
, vol.272r
, pp. 1-52
-
-
-
64
-
-
85044376436
-
Scientific Opinion on monitoring and assessment of the public health risk of ‘Salmonella Typhimurium-like’ strains
-
1826
-
EFSA Panel on Biological Hazards (BIOHAZ), 2010. Scientific Opinion on monitoring and assessment of the public health risk of ‘Salmonella Typhimurium-like’ strains. EFSA Journal 2010;8(10):1826, 48 pp. doi:10.2903/j.efsa.2010.1826
-
(2010)
EFSA Journal 2010
, vol.8
, Issue.10
, pp. 48
-
-
-
65
-
-
85056214520
-
Scientific Opinion on Campylobacter in broiler meat production: control options and performance objectives and/or targets at different stages of the food chain
-
2105
-
EFSA Panel on Biological Hazards (BIOHAZ), 2011a. Scientific Opinion on Campylobacter in broiler meat production: control options and performance objectives and/or targets at different stages of the food chain. EFSA Journal 2011;9(4):2105, 141 pp. doi:10.2903/j.efsa.2011.2105
-
(2011)
EFSA Journal 2011
, vol.9
, Issue.4
, pp. 141
-
-
-
66
-
-
85019286208
-
Scientific Opinion on a quantitative estimation of the public health impact of setting a new target for the reduction of Salmonella in broilers
-
2016
-
EFSA Panel on Biological Hazards (BIOHAZ), 2011b. Scientific Opinion on a quantitative estimation of the public health impact of setting a new target for the reduction of Salmonella in broilers. EFSA Journal 2011;9(7):2016, 94 pp. doi:10.2903/j.efsa.2011.2106
-
(2011)
EFSA Journal 2011
, vol.9
, Issue.7
, pp. 94
-
-
-
67
-
-
84924528435
-
Scientific Opinion on an estimation of the public health impact of setting a new target for the reduction of Salmonella in turkeys
-
2616
-
EFSA Panel on Biological Hazards (BIOHAZ), 2012. Scientific Opinion on an estimation of the public health impact of setting a new target for the reduction of Salmonella in turkeys. EFSA Journal 2012;10(4):2616, 89 pp. doi:10.2903/j.efsa.2012.2616
-
(2012)
EFSA Journal 2012
, vol.10
, Issue.4
, pp. 89
-
-
-
68
-
-
84902983303
-
Scientific Opinion on VTEC-seropathotype and scientific criteria regarding pathogenicity assessment
-
3138
-
EFSA BIOHAZ Panel (EFSA Panel on Biological Hazards), 2013. Scientific Opinion on VTEC-seropathotype and scientific criteria regarding pathogenicity assessment. EFSA Journal 2013;11(4):3138, 106 pp. doi:10.2903/j.efsa.2013.3138
-
(2013)
EFSA Journal 2013
, vol.11
, Issue.4
, pp. 106
-
-
-
69
-
-
84865573393
-
The European Union Summary Report on Trends and Sources of Zoonoses, Zoonotic Agents and Food-borne Outbreaks in 2010
-
2597
-
EFSA and ECDC (European Food Safety Authority and European Centre for Disease Prevention and Control), 2012. The European Union Summary Report on Trends and Sources of Zoonoses, Zoonotic Agents and Food-borne Outbreaks in 2010. EFSA Journal 2012;10(3):2597, 442 pp. doi:10.2903/j.efsa.2012.2597
-
(2012)
EFSA Journal 2012
, vol.10
, Issue.3
, pp. 442
-
-
-
70
-
-
85066859744
-
The European Union Summary Report on Trends and Sources of Zoonoses, Zoonotic Agents and Food-borne Outbreaks in 2011
-
3129
-
EFSA and ECDC (European Food Safety Authority and European Centre for Disease Prevention and Control), 2013. The European Union Summary Report on Trends and Sources of Zoonoses, Zoonotic Agents and Food-borne Outbreaks in 2011. EFSA Journal 2013;11(4):3129, 250 pp. doi:10.2903/j.efsa.2013.3129
-
(2013)
EFSA Journal 2013
, vol.11
, Issue.4
, pp. 250
-
-
-
71
-
-
84875935946
-
Characterization of clinical Campylobacter jejuni isolates with special emphasis on lipooligosaccharide locus class, putative virulence factors and host response
-
Ellström P, Feodoroff B, Hanninen ML and Rautelin H, 2013. Characterization of clinical Campylobacter jejuni isolates with special emphasis on lipooligosaccharide locus class, putative virulence factors and host response. Int J Med Microbiol, 303, 134–139.
-
(2013)
Int J Med Microbiol
, vol.303
, pp. 134-139
-
-
Ellström, P.1
Feodoroff, B.2
Hanninen, M.L.3
Rautelin, H.4
-
72
-
-
84862078522
-
CRISPR typing and subtyping for improved laboratory surveillance of Salmonella infections
-
Fabre L, Zhang J, Guigon G, Le Hello S, Guibert V, Accou-Demartin M, de Romans S, Lim C, Roux C, Passet V, Diancourt L, Guibourdenche M, Issenhuth-Jeanjean S, Achtman M, Brisse S, Sola C and Weill FX, 2012. CRISPR typing and subtyping for improved laboratory surveillance of Salmonella infections. PLoS One, 7, e36995.
-
(2012)
PLoS One
, vol.7
-
-
Fabre, L.1
Zhang, J.2
Guigon, G.3
Le Hello, S.4
Guibert, V.5
Accou-Demartin, M.6
de Romans, S.7
Lim, C.8
Roux, C.9
Passet, V.10
Diancourt, L.11
Guibourdenche, M.12
Issenhuth-Jeanjean, S.13
Achtman, M.14
Brisse, S.15
Sola, C.16
Weill, F.X.17
-
73
-
-
84875737333
-
Salmonella enterica serovar Typhimurium skills to succeed in the host: virulence and regulation
-
Fabrega A and Vila J, 2013. Salmonella enterica serovar Typhimurium skills to succeed in the host: virulence and regulation. Clin Microbiol Rev, 26, 308–341.
-
(2013)
Clin Microbiol Rev
, vol.26
, pp. 308-341
-
-
Fabrega, A.1
Vila, J.2
-
74
-
-
1342304133
-
eBURST: inferring patterns of evolutionary descent among clusters of related bacterial genotypes from multilocus sequence typing data
-
Feil EJ, Li BC, Aanensen DM, Hanage WP and Spratt BG, 2004. eBURST: inferring patterns of evolutionary descent among clusters of related bacterial genotypes from multilocus sequence typing data. J Bacteriol, 186, 1518–1530.
-
(2004)
J Bacteriol
, vol.186
, pp. 1518-1530
-
-
Feil, E.J.1
Li, B.C.2
Aanensen, D.M.3
Hanage, W.P.4
Spratt, B.G.5
-
75
-
-
84864981914
-
Pulsed-field gel electrophoresis, conventional, and molecular serotyping of Listeria monocytogenes from food proficiency testing trials toward an harmonization of subtyping at European level
-
Felix B, Dao TT, Grout J, Lombard B, Assere A, Brisabois A and Roussel S, 2012. Pulsed-field gel electrophoresis, conventional, and molecular serotyping of Listeria monocytogenes from food proficiency testing trials toward an harmonization of subtyping at European level. Foodborne Pathog Dis, 9, 719–726.
-
(2012)
Foodborne Pathog Dis
, vol.9
, pp. 719-726
-
-
Felix, B.1
Dao, T.T.2
Grout, J.3
Lombard, B.4
Assere, A.5
Brisabois, A.6
Roussel, S.7
-
76
-
-
84862673272
-
Escherichia coli producing VIM-1 carbapenemase isolated on a pig farm
-
Fischer J, Rodriguez I, Schmoger S, Friese A, Roesler U, Helmuth R and Guerra B, 2012. Escherichia coli producing VIM-1 carbapenemase isolated on a pig farm. The Journal of antimicrobial chemotherapy, 67, 1793–1795.
-
(2012)
The Journal of antimicrobial chemotherapy
, vol.67
, pp. 1793-1795
-
-
Fischer, J.1
Rodriguez, I.2
Schmoger, S.3
Friese, A.4
Roesler, U.5
Helmuth, R.6
Guerra, B.7
-
77
-
-
84872376819
-
Salmonella enterica subsp enterica producing VIM-1 carbapenemase isolated from livestock farms
-
Fischer J, Rodriguez I, Schmoger S, Friese A, Roesler U, Helmuth R and Guerra B, 2013a. Salmonella enterica subsp enterica producing VIM-1 carbapenemase isolated from livestock farms. Journal of Antimicrobial Chemotherapy, 68, 478–480.
-
(2013)
Journal of Antimicrobial Chemotherapy
, vol.68
, pp. 478-480
-
-
Fischer, J.1
Rodriguez, I.2
Schmoger, S.3
Friese, A.4
Roesler, U.5
Helmuth, R.6
Guerra, B.7
-
78
-
-
84892455690
-
Carbapenemases are present in enterobacteria from non-domestic animals…more frequently than we thought
-
P1449., European Society for Clinical Microbiology and Infectious Disease, Basel, Switzerland
-
Fischer J, Schmoger S, Baumann B, Laube H, von Salviati C, Friese A, Roesler U, Helmuth R and Helmuth BG, 2013b. Carbapenemases are present in enterobacteria from non-domestic animals…more frequently than we thought. In: Abstracts of the 23rd European Congress of Clinical Microbiology and Infectious Disease, ECCMID, Berlin, Germany. P1449. European Society for Clinical Microbiology and Infectious Disease, Basel, Switzerland.
-
(2013)
Abstracts of the 23rd European Congress of Clinical Microbiology and Infectious Disease, ECCMID, Berlin, Germany
-
-
Fischer, J.1
Schmoger, S.2
Baumann, B.3
Laube, H.4
von Salviati, C.5
Friese, A.6
Roesler, U.7
Helmuth, R.8
Helmuth, B.G.9
-
79
-
-
14044265549
-
The Enter-net and Salm-gene databases of foodborne bacterial pathogens that cause human infections in Europe and beyond: an international collaboration in surveillance and the development of intervention strategies
-
Fisher IS and Threlfall EJ, 2005. The Enter-net and Salm-gene databases of foodborne bacterial pathogens that cause human infections in Europe and beyond: an international collaboration in surveillance and the development of intervention strategies. Epidemiol Infect, 133, 1–7.
-
(2005)
Epidemiol Infect
, vol.133
, pp. 1-7
-
-
Fisher, I.S.1
Threlfall, E.J.2
-
80
-
-
35348839697
-
Multiplex, bead-based suspension array for molecular determination of common Salmonella serogroups
-
Fitzgerald C, Collins M, van Duyne S, Mikoleit M, Brown T and Fields P, 2007. Multiplex, bead-based suspension array for molecular determination of common Salmonella serogroups. J Clin Microbiol, 45, 3323–3334.
-
(2007)
J Clin Microbiol
, vol.45
, pp. 3323-3334
-
-
Fitzgerald, C.1
Collins, M.2
van Duyne, S.3
Mikoleit, M.4
Brown, T.5
Fields, P.6
-
81
-
-
0034950838
-
Evaluation of methods for subtyping Campylobacter jejuni during an outbreak involving a food handler
-
Fitzgerald C, Helsel LO, Nicholson MA, Olsen SJ, Swerdlow DL, Flahart R, Sexton J and Fields PI, 2001. Evaluation of methods for subtyping Campylobacter jejuni during an outbreak involving a food handler. J Clin Microbiol, 39, 2386–2390.
-
(2001)
J Clin Microbiol
, vol.39
, pp. 2386-2390
-
-
Fitzgerald, C.1
Helsel, L.O.2
Nicholson, M.A.3
Olsen, S.J.4
Swerdlow, D.L.5
Flahart, R.6
Sexton, J.7
Fields, P.I.8
-
82
-
-
68649100921
-
Molecular typing methodologies for microbial source tracking and epidemiological investigations of Gram-negative bacterial foodborne pathogens
-
Foley SL, Lynne AM and Nayak R, 2009. Molecular typing methodologies for microbial source tracking and epidemiological investigations of Gram-negative bacterial foodborne pathogens. Infect Genet Evol, 9, 430–440.
-
(2009)
Infect Genet Evol
, vol.9
, pp. 430-440
-
-
Foley, S.L.1
Lynne, A.M.2
Nayak, R.3
-
83
-
-
79957963541
-
Large and ongoing outbreak of haemolytic uraemic syndrome, Germany, May 2011
-
Frank C, Faber MS, Askar M, Bernard H, Fruth A, Gilsdorf A, Hohle M, Karch H, Krause G, Prager R, Spode A, Stark K and Werber D, 2011a. Large and ongoing outbreak of haemolytic uraemic syndrome, Germany, May 2011. Euro Surveill, 16.
-
(2011)
Euro Surveill
, pp. 16
-
-
Frank, C.1
Faber, M.S.2
Askar, M.3
Bernard, H.4
Fruth, A.5
Gilsdorf, A.6
Hohle, M.7
Karch, H.8
Krause, G.9
Prager, R.10
Spode, A.11
Stark, K.12
Werber, D.13
-
84
-
-
80955168000
-
Epidemic profile of Shiga-toxin-producing Escherichia coli O104:H4 outbreak in Germany
-
Frank C, Werber D, Cramer JP, Askar M, Faber M, an der Heiden M, Bernard H, Fruth A, Prager R, Spode A, Wadl M, Zoufaly A, Jordan S, Kemper MJ, Follin P, Muller L, King LA, Rosner B, Buchholz U, Stark K and Krause G, 2011b. Epidemic profile of Shiga-toxin-producing Escherichia coli O104:H4 outbreak in Germany. N Engl J Med, 365, 1771–1780.
-
(2011)
N Engl J Med
, vol.365
, pp. 1771-1780
-
-
Frank, C.1
Werber, D.2
Cramer, J.P.3
Askar, M.4
Faber, M.5
an der Heiden, M.6
Bernard, H.7
Fruth, A.8
Prager, R.9
Spode, A.10
Wadl, M.11
Zoufaly, A.12
Jordan, S.13
Kemper, M.J.14
Follin, P.15
Muller, L.16
King, L.A.17
Rosner, B.18
Buchholz, U.19
Stark, K.20
Krause, G.21
more..
-
85
-
-
79955876027
-
Detection by multiplex real-time polymerase chain reaction assays and isolation of Shiga toxin-producing Escherichia coli serogroups O26, O45, O103, O111, O121, and O145 in ground beef
-
Fratamico PM, Bagi LK, Cray WC, Jr., Narang N, Yan X, Medina M and Liu Y, 2011. Detection by multiplex real-time polymerase chain reaction assays and isolation of Shiga toxin-producing Escherichia coli serogroups O26, O45, O103, O111, O121, and O145 in ground beef. Foodborne Pathog Dis, 8, 601–607.
-
(2011)
Foodborne Pathog Dis
, vol.8
, pp. 601-607
-
-
Fratamico, P.M.1
Bagi, L.K.2
Cray, W.C.3
Narang, N.4
Yan, X.5
Medina, M.6
Liu, Y.7
-
86
-
-
0036139657
-
Escherichia coli harboring Shiga toxin 2 gene variants: frequency and association with clinical symptoms
-
Friedrich AW, Bielaszewska M, Zhang WL, Pulz M, Kuczius T, Ammon A and Karch H, 2002. Escherichia coli harboring Shiga toxin 2 gene variants: frequency and association with clinical symptoms. J Infect Dis, 185, 74–84.
-
(2002)
J Infect Dis
, vol.185
, pp. 74-84
-
-
Friedrich, A.W.1
Bielaszewska, M.2
Zhang, W.L.3
Pulz, M.4
Kuczius, T.5
Ammon, A.6
Karch, H.7
-
87
-
-
44449143907
-
Multilocus sequence typing of IncI1 plasmids carrying extended-spectrum beta-lactamases in Escherichia coli and Salmonella of human and animal origin
-
Garcia-Fernandez A, Chiaretto G, Bertini A, Villa L, Fortini D, Ricci A and Carattoli A, 2008. Multilocus sequence typing of IncI1 plasmids carrying extended-spectrum beta-lactamases in Escherichia coli and Salmonella of human and animal origin. J Antimicrob Chemother, 61, 1229–1233.
-
(2008)
J Antimicrob Chemother
, vol.61
, pp. 1229-1233
-
-
Garcia-Fernandez, A.1
Chiaretto, G.2
Bertini, A.3
Villa, L.4
Fortini, D.5
Ricci, A.6
Carattoli, A.7
-
88
-
-
79951995822
-
Whole-genome sequencing and social-network analysis of a tuberculosis outbreak
-
Gardy JL, Johnston JC, Ho Sui SJ, Cook VJ, Shah L, Brodkin E, Rempel S, Moore R, Zhao Y, Holt R, Varhol R, Birol I, Lem M, Sharma MK, Elwood K, Jones SJ, Brinkman FS, Brunham RC and Tang P, 2011. Whole-genome sequencing and social-network analysis of a tuberculosis outbreak. N Engl J Med, 364, 730–739.
-
(2011)
N Engl J Med
, vol.364
, pp. 730-739
-
-
Gardy, J.L.1
Johnston, J.C.2
Ho Sui, S.J.3
Cook, V.J.4
Shah, L.5
Brodkin, E.6
Rempel, S.7
Moore, R.8
Zhao, Y.9
Holt, R.10
Varhol, R.11
Birol, I.12
Lem, M.13
Sharma, M.K.14
Elwood, K.15
Jones, S.J.16
Brinkman, F.S.17
Brunham, R.C.18
Tang, P.19
-
89
-
-
85051551210
-
Use of heavy metals in swine feed and its association with the co-selection of metal tolerant and multi-drug resistant Salmonella
-
Maastricht, the Netherlands, 19-22 June 2011
-
Gebreyes W, 2011. Use of heavy metals in swine feed and its association with the co-selection of metal tolerant and multi-drug resistant Salmonella. 9th International Conference on the Epidemiology and Control of biological, chemical and physical hazards in pigs and pork (SafePork 2011), Maastricht, the Netherlands, 19-22 June 2011. 186–188.
-
(2011)
9th International Conference on the Epidemiology and Control of biological, chemical and physical hazards in pigs and pork (SafePork 2011)
, pp. 186-188
-
-
Gebreyes, W.1
-
90
-
-
26044450544
-
Molecular surveillance of shiga toxigenic Escherichia coli O157 by PulseNet USA
-
Gerner-Smidt P, Kincaid J, Kubota K, Hise K, Hunter SB, Fair MA, Norton D, Woo-Ming A, Kurzynski T, Sotir MJ, Head M, Holt K and Swaminathan B, 2005. Molecular surveillance of shiga toxigenic Escherichia coli O157 by PulseNet USA. J Food Prot, 68, 1926–1931.
-
(2005)
J Food Prot
, vol.68
, pp. 1926-1931
-
-
Gerner-Smidt, P.1
Kincaid, J.2
Kubota, K.3
Hise, K.4
Hunter, S.B.5
Fair, M.A.6
Norton, D.7
Woo-Ming, A.8
Kurzynski, T.9
Sotir, M.J.10
Head, M.11
Holt, K.12
Swaminathan, B.13
-
91
-
-
33645714579
-
Standardized pulsed-field gel electrophoresis of Shiga toxin-producing Escherichia coli: the PulseNet Europe Feasibility Study
-
Gerner-Smidt P and Scheutz F, 2006. Standardized pulsed-field gel electrophoresis of Shiga toxin-producing Escherichia coli: the PulseNet Europe Feasibility Study. Foodborne Pathog Dis, 3, 74–80.
-
(2006)
Foodborne Pathog Dis
, vol.3
, pp. 74-80
-
-
Gerner-Smidt, P.1
Scheutz, F.2
-
92
-
-
20844463773
-
Microbiological aspects of the investigation that traced the 1998 outbreak of listeriosis in the United States to contaminated hot dogs and establishment of molecular subtyping-based surveillance for Listeria monocytogenes in the PulseNet network
-
Graves LM, Hunter SB, Ong AR, Schoonmaker-Bopp D, Hise K, Kornstein L, DeWitt WE, Hayes PS, Dunne E, Mead P and Swaminathan B, 2005. Microbiological aspects of the investigation that traced the 1998 outbreak of listeriosis in the United States to contaminated hot dogs and establishment of molecular subtyping-based surveillance for Listeria monocytogenes in the PulseNet network. J Clin Microbiol, 43, 2350–2355.
-
(2005)
J Clin Microbiol
, vol.43
, pp. 2350-2355
-
-
Graves, L.M.1
Hunter, S.B.2
Ong, A.R.3
Schoonmaker-Bopp, D.4
Hise, K.5
Kornstein, L.6
DeWitt, W.E.7
Hayes, P.S.8
Dunne, E.9
Mead, P.10
Swaminathan, B.11
-
93
-
-
0035843644
-
PulseNet standardized protocol for subtyping Listeria monocytogenes by macrorestriction and pulsed-field gel electrophoresis
-
Graves LM and Swaminathan B, 2001. PulseNet standardized protocol for subtyping Listeria monocytogenes by macrorestriction and pulsed-field gel electrophoresis. Int J Food Microbiol, 65, 55–62.
-
(2001)
Int J Food Microbiol
, vol.65
, pp. 55-62
-
-
Graves, L.M.1
Swaminathan, B.2
-
94
-
-
84874405060
-
Marked host specificity and lack of phylogeographic population structure of Campylobacter jejuni in wild birds
-
Griekspoor P, Colles FM, McCarthy ND, Hansbro PM, Ashhurst-Smith C, Olsen B, Hasselquist D, Maiden MC and Waldenstrom J, 2013. Marked host specificity and lack of phylogeographic population structure of Campylobacter jejuni in wild birds. Mol Ecol, 22, 1463–1472.
-
(2013)
Mol Ecol
, vol.22
, pp. 1463-1472
-
-
Griekspoor, P.1
Colles, F.M.2
McCarthy, N.D.3
Hansbro, P.M.4
Ashhurst-Smith, C.5
Olsen, B.6
Hasselquist, D.7
Maiden, M.C.8
Waldenstrom, J.9
-
95
-
-
33645706581
-
A comparison of Listeria monocytogenes serovar 4b isolates of clinical and food origin in Austria by automated ribotyping and pulsed-field gel electrophoresis
-
Grif K, Heller I, Wagner M, Dierich M and Wurzner R, 2006. A comparison of Listeria monocytogenes serovar 4b isolates of clinical and food origin in Austria by automated ribotyping and pulsed-field gel electrophoresis. Foodborne Pathog Dis, 3, 138–141.
-
(2006)
Foodborne Pathog Dis
, vol.3
, pp. 138-141
-
-
Grif, K.1
Heller, I.2
Wagner, M.3
Dierich, M.4
Wurzner, R.5
-
96
-
-
0035086083
-
Multidrug resistance is mediated by large plasmids carrying a class 1 integron in the emergent Salmonella enterica serotype [4,5,12:i:-]
-
Guerra B, Soto SM, Arguelles JM and Mendoza MC, 2001. Multidrug resistance is mediated by large plasmids carrying a class 1 integron in the emergent Salmonella enterica serotype [4,5,12:i:-]. Antimicrob Agents Chemother, 45, 1305–1308.
-
(2001)
Antimicrob Agents Chemother
, vol.45
, pp. 1305-1308
-
-
Guerra, B.1
Soto, S.M.2
Arguelles, J.M.3
Mendoza, M.C.4
-
97
-
-
84860495725
-
The Role of the spv Genes in Salmonella Pathogenesis
-
Guiney DG and Fierer J, 2011. The Role of the spv Genes in Salmonella Pathogenesis. Front Microbiol, 2, 129.
-
(2011)
Front Microbiol
, vol.2
, pp. 129
-
-
Guiney, D.G.1
Fierer, J.2
-
98
-
-
79953724373
-
Application of Bayesian techniques to model the burden of human salmonellosis attributable to U.S. food commodities at the point of processing: adaptation of a Danish model
-
Guo C, Hoekstra RM, Schroeder CM, Pires SM, Ong KL, Hartnett E, Naugle A, Harman J, Bennett P, Cieslak P, Scallan E, Rose B, Holt KG, Kissler B, Mbandi E, Roodsari R, Angulo FJ and Cole D, 2011. Application of Bayesian techniques to model the burden of human salmonellosis attributable to U.S. food commodities at the point of processing: adaptation of a Danish model. Foodborne Pathog Dis, 8, 509–516.
-
(2011)
Foodborne Pathog Dis
, vol.8
, pp. 509-516
-
-
Guo, C.1
Hoekstra, R.M.2
Schroeder, C.M.3
Pires, S.M.4
Ong, K.L.5
Hartnett, E.6
Naugle, A.7
Harman, J.8
Bennett, P.9
Cieslak, P.10
Scallan, E.11
Rose, B.12
Holt, K.G.13
Kissler, B.14
Mbandi, E.15
Roodsari, R.16
Angulo, F.J.17
Cole, D.18
-
99
-
-
84877102596
-
Development of a DNA microarray for molecular identification of all 46 Salmonella O serogroups
-
Guo D, Liu B, Liu F, Cao B, Chen M, Hao X, Feng L and Wang L, 2013. Development of a DNA microarray for molecular identification of all 46 Salmonella O serogroups. Appl Environ Microbiol, 79, 3392–3399.
-
(2013)
Appl Environ Microbiol
, vol.79
, pp. 3392-3399
-
-
Guo, D.1
Liu, B.2
Liu, F.3
Cao, B.4
Chen, M.5
Hao, X.6
Feng, L.7
Wang, L.8
-
100
-
-
0035313540
-
Exploring the evolution of diversity in pathogen populations
-
Gupta S and Maiden MCJ, 2001. Exploring the evolution of diversity in pathogen populations. Trends Microbiol 9, 181–192.
-
(2001)
Trends Microbiol
, vol.9
, pp. 181-192
-
-
Gupta, S.1
Maiden, M.C.J.2
-
101
-
-
0034980876
-
Ecological fitness, genomic islands and bacterial pathogenicity. A Darwinian view of the evolution of microbes
-
Hacker J and Carniel E, 2001. Ecological fitness, genomic islands and bacterial pathogenicity. A Darwinian view of the evolution of microbes. EMBO Rep, 2, 376–381.
-
(2001)
EMBO Rep
, vol.2
, pp. 376-381
-
-
Hacker, J.1
Carniel, E.2
-
102
-
-
34948819795
-
The attribution of human infections with antimicrobial resistant Salmonella bacteria in Denmark to sources of animal origin
-
Hald T, Lo Fo Wong DM and Aarestrup FM, 2007. The attribution of human infections with antimicrobial resistant Salmonella bacteria in Denmark to sources of animal origin. Foodborne Pathog Dis, 4, 313–326.
-
(2007)
Foodborne Pathog Dis
, vol.4
, pp. 313-326
-
-
Hald, T.1
Lo Fo Wong, D.M.2
Aarestrup, F.M.3
-
103
-
-
85065609448
-
Development of a user-friendly interface version of the Salmonella source-attribution model
-
Supporting Publications 2012EN-318
-
Hald T and Lund J, 2012. Development of a user-friendly interface version of the Salmonella source-attribution model. External Scientific Report. Supporting Publications 2012:EN-318. [77 pp.].
-
(2012)
External Scientific Report
, pp. 77
-
-
Hald, T.1
Lund, J.2
-
104
-
-
1442354765
-
A Bayesian approach to quantify the contribution of animal-food sources to human salmonellosis
-
Hald T, Vose D, Wegener HC and Koupeev T, 2004. A Bayesian approach to quantify the contribution of animal-food sources to human salmonellosis. Risk Anal, 24, 255–269.
-
(2004)
Risk Anal
, vol.24
, pp. 255-269
-
-
Hald, T.1
Vose, D.2
Wegener, H.C.3
Koupeev, T.4
-
105
-
-
78449248732
-
Salmonella genomic islands and antibiotic resistance in Salmonella enterica
-
Hall RM, 2010. Salmonella genomic islands and antibiotic resistance in Salmonella enterica. Future Microbiol, 5, 1525–1538.
-
(2010)
Future Microbiol
, vol.5
, pp. 1525-1538
-
-
Hall, R.M.1
-
106
-
-
84931445147
-
Molecular typing of bacterial pathogens: a tool for the epidemiological study and control of infectious diseases
-
Editors, Morand, S., Beaudeau, F., Cabaret, J., Springer, London
-
Hallin M, Deplano A and Struelens MJ 2012. Molecular typing of bacterial pathogens: a tool for the epidemiological study and control of infectious diseases. In: New Frotiers of Molecular Epidemiology of Infectious diseases. Editors: Morand, S., Beaudeau, F. and Cabaret, J. Springer, London. ISBN 978-94-007-2114-2
-
(2012)
New Frotiers of Molecular Epidemiology of Infectious diseases
-
-
Hallin, M.1
Deplano, A.2
Struelens, M.J.3
-
107
-
-
84887621185
-
The FUN of identifying gene function in bacterial pathogens; insights from Salmonella functional genomics
-
Hammarlöf DL, Canals R and Hinton JC, 2013. The FUN of identifying gene function in bacterial pathogens; insights from Salmonella functional genomics. Curr Opin Microbiol.
-
(2013)
Curr Opin Microbiol
-
-
Hammarlöf, D.L.1
Canals, R.2
Hinton, J.C.3
-
108
-
-
84887270879
-
Salmonella modulation of host cell gene expression promotes its intracellular growth
-
Hannemann S, Gao B and Galan JE, 2013. Salmonella modulation of host cell gene expression promotes its intracellular growth. PLoS Pathog, 9, e1003668.
-
(2013)
PLoS Pathog
, vol.9
-
-
Hannemann, S.1
Gao, B.2
Galan, J.E.3
-
109
-
-
84874531575
-
Solid-State and Biological Nanopore for Real-Time Sensing of Single Chemical and Sequencing of DNA
-
Haque F, Li J, Wu HC, Liang XJ and Guo P, 2013. Solid-State and Biological Nanopore for Real-Time Sensing of Single Chemical and Sequencing of DNA. Nano Today, 8, 56–74.
-
(2013)
Nano Today
, vol.8
, pp. 56-74
-
-
Haque, F.1
Li, J.2
Wu, H.C.3
Liang, X.J.4
Guo, P.5
-
110
-
-
0030750202
-
Evidence for recombination in the flagellin locus of Campylobacter jejuni: implications for the flagellin gene typing scheme
-
Harrington CS, Thomson-Carter FM and Carter PE, 1997. Evidence for recombination in the flagellin locus of Campylobacter jejuni: implications for the flagellin gene typing scheme. J Clin Microbiol, 35, 2386–2392.
-
(1997)
J Clin Microbiol
, vol.35
, pp. 2386-2392
-
-
Harrington, C.S.1
Thomson-Carter, F.M.2
Carter, P.E.3
-
111
-
-
84876171524
-
Phylogenetic and molecular analysis of food-borne shiga toxin-producing Escherichia coli
-
Hauser E, Mellmann A, Semmler T, Stoeber H, Wieler LH, Karch H, Kuebler N, Fruth A, Harmsen D, Weniger T, Tietze E and Schmidt H, 2013. Phylogenetic and molecular analysis of food-borne shiga toxin-producing Escherichia coli. Appl Environ Microbiol, 79, 2731–2740.
-
(2013)
Appl Environ Microbiol
, vol.79
, pp. 2731-2740
-
-
Hauser, E.1
Mellmann, A.2
Semmler, T.3
Stoeber, H.4
Wieler, L.H.5
Karch, H.6
Kuebler, N.7
Fruth, A.8
Harmsen, D.9
Weniger, T.10
Tietze, E.11
Schmidt, H.12
-
112
-
-
34247375975
-
Towards an integrated approach in supporting microbiological food safety decisions
-
Havelaar AH, Braunig J, Christiansen K, Cornu M, Hald T, Mangen MJ, Molbak K, Pielaat A, Snary E, Van Pelt W, Velthuis A and Wahlstrom H, 2007. Towards an integrated approach in supporting microbiological food safety decisions. Zoonoses Public Health, 54, 103–117.
-
(2007)
Zoonoses Public Health
, vol.54
, pp. 103-117
-
-
Havelaar, A.H.1
Braunig, J.2
Christiansen, K.3
Cornu, M.4
Hald, T.5
Mangen, M.J.6
Molbak, K.7
Pielaat, A.8
Snary, E.9
Van Pelt, W.10
Velthuis, A.11
Wahlstrom, H.12
-
113
-
-
84881092850
-
Refining the pathovar paradigm via phylogenomics of the attaching and effacing Escherichia coli
-
Hazen TH, Sahl JW, Fraser CM, Donnenberg MS, Scheutz F and Rasko DA, 2013. Refining the pathovar paradigm via phylogenomics of the attaching and effacing Escherichia coli. Proc Natl Acad Sci U S A, 110, 12810–12815.
-
(2013)
Proc Natl Acad Sci U S A
, vol.110
, pp. 12810-12815
-
-
Hazen, T.H.1
Sahl, J.W.2
Fraser, C.M.3
Donnenberg, M.S.4
Scheutz, F.5
Rasko, D.A.6
-
114
-
-
77954300627
-
Multiresistant Salmonella enterica serovar 4,[5], 12:i:- in Europe: a new pandemic strain?
-
Hopkins KL, Kirchner M, Guerra B, Granier SA, Lucarelli C, Porrero MC, Jakubczak A, Threlfall EJ and Mevius DJ, 2010. Multiresistant Salmonella enterica serovar 4,[5], 12:i:- in Europe: a new pandemic strain? Eurosurveillance, 15, 2–10.
-
(2010)
Eurosurveillance
, vol.15
, pp. 2-10
-
-
Hopkins, K.L.1
Kirchner, M.2
Guerra, B.3
Granier, S.A.4
Lucarelli, C.5
Porrero, M.C.6
Jakubczak, A.7
Threlfall, E.J.8
Mevius, D.J.9
-
115
-
-
33748697469
-
Replicon typing of plasmids carrying CTX-M or CMY beta-lactamases circulating among Salmonella and Escherichia coli isolates
-
Hopkins KL, Liebana E, Villa L, Batchelor M, Threlfall EJ and Carattoli A, 2006. Replicon typing of plasmids carrying CTX-M or CMY beta-lactamases circulating among Salmonella and Escherichia coli isolates. Antimicrob Agents Chemother, 50, 3203–3206.
-
(2006)
Antimicrob Agents Chemother
, vol.50
, pp. 3203-3206
-
-
Hopkins, K.L.1
Liebana, E.2
Villa, L.3
Batchelor, M.4
Threlfall, E.J.5
Carattoli, A.6
-
116
-
-
80052054109
-
Standardisation of multilocus variable-number tandem-repeat analysis (MLVA) for subtyping of Salmonella enterica serovar Enteritidis
-
Hopkins KL, Peters TM, de Pinna E and Wain J, 2011. Standardisation of multilocus variable-number tandem-repeat analysis (MLVA) for subtyping of Salmonella enterica serovar Enteritidis. Euro Surveill, 16.
-
(2011)
Euro Surveill
, pp. 16
-
-
Hopkins, K.L.1
Peters, T.M.2
de Pinna, E.3
Wain, J.4
-
117
-
-
84859171818
-
Fitness of Escherichia coli strains carrying expressed and partially silent IncN and IncP1 plasmids
-
Humphrey B, Thomson NR, Thomas CM, Brooks K, Sanders M, Delsol AA, Roe JM, Bennett PM and Enne VI, 2012. Fitness of Escherichia coli strains carrying expressed and partially silent IncN and IncP1 plasmids. BMC Microbiol, 12, 53.
-
(2012)
BMC Microbiol
, vol.12
, pp. 53
-
-
Humphrey, B.1
Thomson, N.R.2
Thomas, C.M.3
Brooks, K.4
Sanders, M.5
Delsol, A.A.6
Roe, J.M.7
Bennett, P.M.8
Enne, V.I.9
-
118
-
-
0025063184
-
Reproducibility and indices of discriminatory power of microbial typing methods
-
Hunter PR, 1990. Reproducibility and indices of discriminatory power of microbial typing methods. J Clin Microbiol, 28, 1903–1905.
-
(1990)
J Clin Microbiol
, vol.28
, pp. 1903-1905
-
-
Hunter, P.R.1
-
119
-
-
0023738045
-
Numerical index of the discriminatory ability of typing systems: an application of Simpson's index of diversity
-
Hunter PR and Gaston MA, 1988. Numerical index of the discriminatory ability of typing systems: an application of Simpson's index of diversity. J Clin Microbiol, 26, 2465–2466.
-
(1988)
J Clin Microbiol
, vol.26
, pp. 2465-2466
-
-
Hunter, P.R.1
Gaston, M.A.2
-
120
-
-
33645714578
-
Second generation subtyping: a proposed PulseNet protocol for multiple-locus variable-number tandem repeat analysis of Shiga toxin-producing Escherichia coli O157 (STEC O157)
-
Hyytia-Trees E, Smole SC, Fields PA, Swaminathan B and Ribot EM, 2006. Second generation subtyping: a proposed PulseNet protocol for multiple-locus variable-number tandem repeat analysis of Shiga toxin-producing Escherichia coli O157 (STEC O157). Foodborne Pathog Dis, 3, 118–131.
-
(2006)
Foodborne Pathog Dis
, vol.3
, pp. 118-131
-
-
Hyytia-Trees, E.1
Smole, S.C.2
Fields, P.A.3
Swaminathan, B.4
Ribot, E.M.5
-
121
-
-
72749111397
-
Salmonella-the ultimate insider. Salmonella virulence factors that modulate intracellular survival
-
Ibarra JA and Steele-Mortimer O, 2009. Salmonella-the ultimate insider. Salmonella virulence factors that modulate intracellular survival. Cell Microbiol, 11, 1579–1586.
-
(2009)
Cell Microbiol
, vol.11
, pp. 1579-1586
-
-
Ibarra, J.A.1
Steele-Mortimer, O.2
-
123
-
-
78651293657
-
Multilocus sequence typing and virulence factors analysis of Escherichia coli O157 strains in China
-
Ji XW, Liao YL, Zhu YF, Wang HG, Gu L, Gu J, Dong C, Ding HL, Mao XH, Zhu FC and Zou QM, 2010. Multilocus sequence typing and virulence factors analysis of Escherichia coli O157 strains in China. J Microbiol, 48, 849–855.
-
(2010)
J Microbiol
, vol.48
, pp. 849-855
-
-
Ji, X.W.1
Liao, Y.L.2
Zhu, Y.F.3
Wang, H.G.4
Gu, L.5
Gu, J.6
Dong, C.7
Ding, H.L.8
Mao, X.H.9
Zhu, F.C.10
Zou, Q.M.11
-
124
-
-
84861749911
-
Expansion of the IncX plasmid family for improved identification and typing of novel plasmids in drug-resistant Enterobacteriaceae
-
Johnson TJ, Bielak EM, Fortini D, Hansen LH, Hasman H, Debroy C, Nolan LK and Carattoli A, 2012. Expansion of the IncX plasmid family for improved identification and typing of novel plasmids in drug-resistant Enterobacteriaceae. Plasmid, 68, 43–50.
-
(2012)
Plasmid
, vol.68
, pp. 43-50
-
-
Johnson, T.J.1
Bielak, E.M.2
Fortini, D.3
Hansen, L.H.4
Hasman, H.5
Debroy, C.6
Nolan, L.K.7
Carattoli, A.8
-
126
-
-
84865709237
-
The enemy within us: lessons from the 2011 European Escherichia coli O104:H4 outbreak
-
Karch H, Denamur E, Dobrindt U, Finlay BB, Hengge R, Johannes L, Ron EZ, Tonjum T, Sansonetti PJ and Vicente M, 2012. The enemy within us: lessons from the 2011 European Escherichia coli O104:H4 outbreak. EMBO Mol Med, 4, 841–848.
-
(2012)
EMBO Mol Med
, vol.4
, pp. 841-848
-
-
Karch, H.1
Denamur, E.2
Dobrindt, U.3
Finlay, B.B.4
Hengge, R.5
Johannes, L.6
Ron, E.Z.7
Tonjum, T.8
Sansonetti, P.J.9
Vicente, M.10
-
127
-
-
0037209125
-
The medical significance of Shiga toxin-producing Escherichia coli infections. An overview
-
Karmali MA, 2003. The medical significance of Shiga toxin-producing Escherichia coli infections. An overview. Methods Mol Med, 73, 1–7.
-
(2003)
Methods Mol Med
, vol.73
, pp. 1-7
-
-
Karmali, M.A.1
-
128
-
-
74449089927
-
Evaluation of a multiplex PCR assay as an alternative method for Listeria monocytogenes serotyping
-
Kerouanton A, Marault M, Petit L, Grout J, Dao TT and Brisabois A, 2010. Evaluation of a multiplex PCR assay as an alternative method for Listeria monocytogenes serotyping. J Microbiol Methods, 80, 134–137.
-
(2010)
J Microbiol Methods
, vol.80
, pp. 134-137
-
-
Kerouanton, A.1
Marault, M.2
Petit, L.3
Grout, J.4
Dao, T.T.5
Brisabois, A.6
-
129
-
-
84859953198
-
Sequence typing confirms that a predominant Listeria monocytogenes clone caused human listeriosis cases and outbreaks in Canada from 1988 to 2010
-
Knabel SJ, Reimer A, Verghese B, Lok M, Ziegler J, Farber J, Pagotto F, Graham M, Nadon CA and Gilmour MW, 2012. Sequence typing confirms that a predominant Listeria monocytogenes clone caused human listeriosis cases and outbreaks in Canada from 1988 to 2010. J Clin Microbiol, 50, 1748–1751.
-
(2012)
J Clin Microbiol
, vol.50
, pp. 1748-1751
-
-
Knabel, S.J.1
Reimer, A.2
Verghese, B.3
Lok, M.4
Ziegler, J.5
Farber, J.6
Pagotto, F.7
Graham, M.8
Nadon, C.A.9
Gilmour, M.W.10
-
130
-
-
85078371341
-
-
U.S. 130,091,126, issued April 11, 2013. Available online at
-
Krishnaswami B, Jandhyala S, Lou Y, Siddiqui A, Agate M, Dhapulkar A, Breu H, Shukla A, Kuhlmann K, Hyland F, Altun G and DThomas D, 2013. Systems and methods for analysis and interpretation of nucleic acid sequence data. U.S. Patent 20,130,091,126, issued April 11, 2013. Available online at: appft1.uspto.gov/netacgi/nph-Parser?Sect1=PTO1&Sect2=HITOFF&d=dG01&p=1&u=/netahtml/PTO/srchnum.html&r=1&f=f&l=50&s1=20130091126.PGNR.
-
(2013)
Systems and methods for analysis and interpretation of nucleic acid sequence data
-
-
Krishnaswami, B.1
Jandhyala, S.2
Lou, Y.3
Siddiqui, A.4
Agate, M.5
Dhapulkar, A.6
Breu, H.7
Shukla, A.8
Kuhlmann, K.9
Hyland, F.10
Altun, G.11
DThomas, D.12
-
131
-
-
67651119916
-
Population structure, origins and evolution of major Salmonella enterica clones
-
Lan R, Reeves PR and Octavia S, 2009. Population structure, origins and evolution of major Salmonella enterica clones. Infect Genet Evol, 9, 996–1005.
-
(2009)
Infect Genet Evol
, vol.9
, pp. 996-1005
-
-
Lan, R.1
Reeves, P.R.2
Octavia, S.3
-
132
-
-
84883332631
-
Proof-of-concept study for successful inter-laboratory comparison of MLVA results
-
Larsson JT, Torpdahl M and Moller Nielsen E, 2013. Proof-of-concept study for successful inter-laboratory comparison of MLVA results. Euro Surveill, 18, 20566.
-
(2013)
Euro Surveill
, vol.18
, pp. 20566
-
-
Larsson, J.T.1
Torpdahl, M.2
Moller Nielsen, E.3
-
133
-
-
76749124615
-
Development of a new nomenclature for Salmonella Typhimurium multilocus variable number of tandem repeats analysis (MLVA)
-
Larsson JT, Torpdahl M, Petersen RF, Sorensen G, Lindstedt BA and Nielsen EM, 2009. Development of a new nomenclature for Salmonella Typhimurium multilocus variable number of tandem repeats analysis (MLVA). Euro Surveill, 14.
-
(2009)
Euro Surveill
, pp. 14
-
-
Larsson, J.T.1
Torpdahl, M.2
Petersen, R.F.3
Sorensen, G.4
Lindstedt, B.A.5
Nielsen, E.M.6
-
134
-
-
0742316339
-
Molecular characterisation of an outbreak strain of multiresistant Salmonella enterica serovar Typhimurium DT104 in the UK
-
Lawson AJ, Desai M, O'Brien SJ, Davies RH, Ward LR and Threlfall EJ, 2004. Molecular characterisation of an outbreak strain of multiresistant Salmonella enterica serovar Typhimurium DT104 in the UK. Clin Microbiol Infect, 10, 143–147.
-
(2004)
Clin Microbiol Infect
, vol.10
, pp. 143-147
-
-
Lawson, A.J.1
Desai, M.2
O'Brien, S.J.3
Davies, R.H.4
Ward, L.R.5
Threlfall, E.J.6
-
135
-
-
84857963108
-
Genomic variation in Salmonella enterica core genes for epidemiological typing
-
Leekitcharoenphon P, Lukjancenko O, Friis C, Aarestrup FM and Ussery DW, 2012. Genomic variation in Salmonella enterica core genes for epidemiological typing. BMC Genomics, 13, 88.
-
(2012)
BMC Genomics
, vol.13
, pp. 88
-
-
Leekitcharoenphon, P.1
Lukjancenko, O.2
Friis, C.3
Aarestrup, F.M.4
Ussery, D.W.5
-
137
-
-
2442427678
-
Multiple genetic typing of Salmonella Enteritidis phage-types 4, 6, 7, 8 and 13a isolates from animals and humans in the UK
-
Liebana E, Clouting C, Garcia-Migura L, Clifton-Hadley FA, Lindsay E, Threlfall EJ and Davies RH, 2004. Multiple genetic typing of Salmonella Enteritidis phage-types 4, 6, 7, 8 and 13a isolates from animals and humans in the UK. Vet Microbiol, 100, 189–195.
-
(2004)
Vet Microbiol
, vol.100
, pp. 189-195
-
-
Liebana, E.1
Clouting, C.2
Garcia-Migura, L.3
Clifton-Hadley, F.A.4
Lindsay, E.5
Threlfall, E.J.6
Davies, R.H.7
-
138
-
-
0036900538
-
Multiple genetic typing of Salmonella enterica serotype Typhimurium isolates of different phage types (DT104, U302, DT204b, and DT49) from animals and humans in England, Wales, and Northern Ireland
-
Liebana E, Garcia-Migura L, Clouting C, Clifton-Hadley FA, Lindsay E, Threlfall EJ, McDowell SW and Davies RH, 2002. Multiple genetic typing of Salmonella enterica serotype Typhimurium isolates of different phage types (DT104, U302, DT204b, and DT49) from animals and humans in England, Wales, and Northern Ireland. J Clin Microbiol, 40, 4450–4456.
-
(2002)
J Clin Microbiol
, vol.40
, pp. 4450-4456
-
-
Liebana, E.1
Garcia-Migura, L.2
Clouting, C.3
Clifton-Hadley, F.A.4
Lindsay, E.5
Threlfall, E.J.6
McDowell, S.W.7
Davies, R.H.8
-
139
-
-
38049121500
-
Multiple-locus variable-number tandem-repeats analysis of Listeria monocytogenes using multicolour capillary electrophoresis and comparison with pulsed-field gel electrophoresis typing
-
Lindstedt BA, Tham W, Danielsson-Tham ML, Vardund T, Helmersson S and Kapperud G, 2008. Multiple-locus variable-number tandem-repeats analysis of Listeria monocytogenes using multicolour capillary electrophoresis and comparison with pulsed-field gel electrophoresis typing. J Microbiol Methods, 72, 141–148.
-
(2008)
J Microbiol Methods
, vol.72
, pp. 141-148
-
-
Lindstedt, B.A.1
Tham, W.2
Danielsson-Tham, M.L.3
Vardund, T.4
Helmersson, S.5
Kapperud, G.6
-
140
-
-
84873851122
-
Use of multilocus variable-number tandem repeat analysis (MLVA) in eight European countries, 2012
-
Lindstedt BA, Torpdahl M, Vergnaud G, Le Hello S, Weill FX, Tietze E, Malorny B, Prendergast DM, Ni Ghallchoir E, Lista RF, Schouls LM, Soderlund R, Borjesson S and Akerstrom S, 2013. Use of multilocus variable-number tandem repeat analysis (MLVA) in eight European countries, 2012. Euro Surveill, 18, 20385.
-
(2013)
Euro Surveill
, vol.18
, pp. 20385
-
-
Lindstedt, B.A.1
Torpdahl, M.2
Vergnaud, G.3
Le Hello, S.4
Weill, F.X.5
Tietze, E.6
Malorny, B.7
Prendergast, D.M.8
Ni Ghallchoir, E.9
Lista, R.F.10
Schouls, L.M.11
Soderlund, R.12
Borjesson, S.13
Akerstrom, S.14
-
141
-
-
5344254628
-
Multiple-locus variable-number tandem-repeats analysis of Salmonella enterica subsp. enterica serovar Typhimurium using PCR multiplexing and multicolor capillary electrophoresis
-
Lindstedt BA, Vardund T, Aas L and Kapperud G, 2004a. Multiple-locus variable-number tandem-repeats analysis of Salmonella enterica subsp. enterica serovar Typhimurium using PCR multiplexing and multicolor capillary electrophoresis. J Microbiol Methods, 59, 163–172.
-
(2004)
J Microbiol Methods
, vol.59
, pp. 163-172
-
-
Lindstedt, B.A.1
Vardund, T.2
Aas, L.3
Kapperud, G.4
-
142
-
-
3242673571
-
Multiple-Locus Variable-Number Tandem-Repeats Analysis of Escherichia coli O157 using PCR multiplexing and multi-colored capillary electrophoresis
-
Lindstedt BA, Vardund T and Kapperud G, 2004b. Multiple-Locus Variable-Number Tandem-Repeats Analysis of Escherichia coli O157 using PCR multiplexing and multi-colored capillary electrophoresis. J Microbiol Methods, 58, 213–222.
-
(2004)
J Microbiol Methods
, vol.58
, pp. 213-222
-
-
Lindstedt, B.A.1
Vardund, T.2
Kapperud, G.3
-
143
-
-
77954527364
-
Attribution of human Listeria monocytogenes infections in England and Wales to ready-to-eat food sources placed on the market: adaptation of the Hald Salmonella source attribution model
-
Little CL, Pires SM, Gillespie IA, Grant K and Nichols GL, 2010. Attribution of human Listeria monocytogenes infections in England and Wales to ready-to-eat food sources placed on the market: adaptation of the Hald Salmonella source attribution model. Foodborne Pathog Dis, 7, 749–756.
-
(2010)
Foodborne Pathog Dis
, vol.7
, pp. 749-756
-
-
Little, C.L.1
Pires, S.M.2
Gillespie, I.A.3
Grant, K.4
Nichols, G.L.5
-
144
-
-
79953205601
-
Novel virulence gene and clustered regularly interspaced short palindromic repeat (CRISPR) multilocus sequence typing scheme for subtyping of the major serovars of Salmonella enterica subsp. enterica
-
Liu F, Barrangou R, Gerner-Smidt P, Ribot EM, Knabel SJ and Dudley EG, 2011a. Novel virulence gene and clustered regularly interspaced short palindromic repeat (CRISPR) multilocus sequence typing scheme for subtyping of the major serovars of Salmonella enterica subsp. enterica. Appl Environ Microbiol, 77, 1946–1956.
-
(2011)
Appl Environ Microbiol
, vol.77
, pp. 1946-1956
-
-
Liu, F.1
Barrangou, R.2
Gerner-Smidt, P.3
Ribot, E.M.4
Knabel, S.J.5
Dudley, E.G.6
-
145
-
-
79960084127
-
Subtyping Salmonella enterica serovar Enteritidis isolates from different sources by using sequence typing based on virulence genes and clustered regularly interspaced short palindromic repeats (CRISPRs)
-
Liu F, Kariyawasam S, Jayarao BM, Barrangou R, Gerner-Smidt P, Ribot EM, Knabel SJ and Dudley EG, 2011b. Subtyping Salmonella enterica serovar Enteritidis isolates from different sources by using sequence typing based on virulence genes and clustered regularly interspaced short palindromic repeats (CRISPRs). Appl Environ Microbiol, 77, 4520–4526.
-
(2011)
Appl Environ Microbiol
, vol.77
, pp. 4520-4526
-
-
Liu, F.1
Kariyawasam, S.2
Jayarao, B.M.3
Barrangou, R.4
Gerner-Smidt, P.5
Ribot, E.M.6
Knabel, S.J.7
Dudley, E.G.8
-
146
-
-
84866893169
-
Integrative genomic analysis identifies isoleucine and CodY as regulators of Listeria monocytogenes virulence
-
Lobel L, Sigal N, Borovok I, Ruppin E and Herskovits AA, 2012. Integrative genomic analysis identifies isoleucine and CodY as regulators of Listeria monocytogenes virulence. PLoS Genet, 8, e1002887.
-
(2012)
PLoS Genet
, vol.8
-
-
Lobel, L.1
Sigal, N.2
Borovok, I.3
Ruppin, E.4
Herskovits, A.A.5
-
147
-
-
84868672811
-
Detection of virulence-associated genes and epidemic clone markers in Listeria monocytogenes isolates from PDO Gorgonzola cheese
-
Lomonaco S, Patti R, Knabel SJ and Civera T, 2012. Detection of virulence-associated genes and epidemic clone markers in Listeria monocytogenes isolates from PDO Gorgonzola cheese. Int J Food Microbiol, 160, 76–79.
-
(2012)
Int J Food Microbiol
, vol.160
, pp. 76-79
-
-
Lomonaco, S.1
Patti, R.2
Knabel, S.J.3
Civera, T.4
-
148
-
-
0028136885
-
Bacterial gene transfer by natural genetic transformation in the environment
-
Lorenz MG and Wackernagel W, 1994. Bacterial gene transfer by natural genetic transformation in the environment. Microbiol Rev, 58, 563–602.
-
(1994)
Microbiol Rev
, vol.58
, pp. 563-602
-
-
Lorenz, M.G.1
Wackernagel, W.2
-
149
-
-
84872330433
-
Non-invasive determination of conjugative transfer of plasmids bearing antibiotic-resistance genes in biofilm-bound bacteria: effects of substrate loading and antibiotic selection
-
Ma H and Bryers JD, 2013. Non-invasive determination of conjugative transfer of plasmids bearing antibiotic-resistance genes in biofilm-bound bacteria: effects of substrate loading and antibiotic selection. Appl Microbiol Biotechnol, 97, 317–328.
-
(2013)
Appl Microbiol Biotechnol
, vol.97
, pp. 317-328
-
-
Ma, H.1
Bryers, J.D.2
-
150
-
-
84881492950
-
Bacterial strain typing
-
MacCannell D, 2013. Bacterial strain typing. Clin Lab Med, 33, 629–650.
-
(2013)
Clin Lab Med
, vol.33
, pp. 629-650
-
-
MacCannell, D.1
-
151
-
-
80052796437
-
Comparison of Campylobacter jejuni isolates from human, food, veterinary and environmental sources in Iceland using PFGE, MLST and fla-SVR sequencing
-
Magnusson SH, Guethmundsdottir S, Reynisson E, Runarsson AR, Harethardottir H, Gunnarson E, Georgsson F, Reiersen J and Marteinsson VT, 2011. Comparison of Campylobacter jejuni isolates from human, food, veterinary and environmental sources in Iceland using PFGE, MLST and fla-SVR sequencing. J Appl Microbiol, 111, 971–981.
-
(2011)
J Appl Microbiol
, vol.111
, pp. 971-981
-
-
Magnusson, S.H.1
Guethmundsdottir, S.2
Reynisson, E.3
Runarsson, A.R.4
Harethardottir, H.5
Gunnarson, E.6
Georgsson, F.7
Reiersen, J.8
Marteinsson, V.T.9
-
152
-
-
33750290454
-
Multilocus sequence typing of bacteria
-
Maiden MC, 2006. Multilocus sequence typing of bacteria. Annu Rev Microbiol, 60, 561–588.
-
(2006)
Annu Rev Microbiol
, vol.60
, pp. 561-588
-
-
Maiden, M.C.1
-
153
-
-
84884290186
-
MLST revisited: the gene-by-gene approach to bacterial genomics
-
Maiden MC, van Rensburg MJ, Bray JE, Earle SG, Ford SA, Jolley KA and McCarthy ND, 2013. MLST revisited: the gene-by-gene approach to bacterial genomics. Nat Rev Microbiol, 11, 728–736.
-
(2013)
Nat Rev Microbiol
, vol.11
, pp. 728-736
-
-
Maiden, M.C.1
van Rensburg, M.J.2
Bray, J.E.3
Earle, S.G.4
Ford, S.A.5
Jolley, K.A.6
McCarthy, N.D.7
-
154
-
-
1642342203
-
Ribotyping characterisation of Campylobacter isolates randomly collected from different sources in Italy
-
Manfreda G, De Cesare A, Bondioli V and Franchini A, 2003. Ribotyping characterisation of Campylobacter isolates randomly collected from different sources in Italy. Diagn Microbiol Infect Dis, 47, 385–392.
-
(2003)
Diagn Microbiol Infect Dis
, vol.47
, pp. 385-392
-
-
Manfreda, G.1
De Cesare, A.2
Bondioli, V.3
Franchini, A.4
-
155
-
-
84871669818
-
Detection and genotyping of Campylobacter jejuni and Campylobacter coli by use of DNA oligonucleotide arrays
-
Marotta F, Zilli K, Tonelli A, Sacchini L, Alessiani A, Migliorati G and Di Giannatale E, 2013. Detection and genotyping of Campylobacter jejuni and Campylobacter coli by use of DNA oligonucleotide arrays. Mol Biotechnol, 53, 182–188.
-
(2013)
Mol Biotechnol
, vol.53
, pp. 182-188
-
-
Marotta, F.1
Zilli, K.2
Tonelli, A.3
Sacchini, L.4
Alessiani, A.5
Migliorati, G.6
Di Giannatale, E.7
-
156
-
-
0030040870
-
Evaluation of ribotyping as epidemiologic tool for typing Escherichia coli serogroup O157 isolates
-
Martin IE, Tyler SD, Tyler KD, Khakhria R and Johnson WM, 1996. Evaluation of ribotyping as epidemiologic tool for typing Escherichia coli serogroup O157 isolates. J Clin Microbiol, 34, 720–723.
-
(1996)
J Clin Microbiol
, vol.34
, pp. 720-723
-
-
Martin, I.E.1
Tyler, S.D.2
Tyler, K.D.3
Khakhria, R.4
Johnson, W.M.5
-
157
-
-
33749488742
-
Pulsed-field gel electrophoresis of Listeria monocytogenes strains: the PulseNet Europe Feasibility Study
-
Martin P, Jacquet C, Goulet V, Vaillant V and De Valk H, 2006. Pulsed-field gel electrophoresis of Listeria monocytogenes strains: the PulseNet Europe Feasibility Study. Foodborne Pathog Dis, 3, 303–308.
-
(2006)
Foodborne Pathog Dis
, vol.3
, pp. 303-308
-
-
Martin, P.1
Jacquet, C.2
Goulet, V.3
Vaillant, V.4
De Valk, H.5
-
158
-
-
84885656011
-
Distinguishable epidemics of multidrug-resistant Salmonella Typhimurium DT104 in different hosts
-
Mather AE, Reid SW, Maskell DJ, Parkhill J, Fookes MC, Harris SR, Brown DJ, Coia JE, Mulvey MR, Gilmour MW, Petrovska L, de Pinna E, Kuroda M, Akiba M, Izumiya H, Connor TR, Suchard MA, Lemey P, Mellor DJ, Haydon DT and Thomson NR, 2013. Distinguishable epidemics of multidrug-resistant Salmonella Typhimurium DT104 in different hosts. Science, 341, 1514–1517.
-
(2013)
Science
, vol.341
, pp. 1514-1517
-
-
Mather, A.E.1
Reid, S.W.2
Maskell, D.J.3
Parkhill, J.4
Fookes, M.C.5
Harris, S.R.6
Brown, D.J.7
Coia, J.E.8
Mulvey, M.R.9
Gilmour, M.W.10
Petrovska, L.11
de Pinna, E.12
Kuroda, M.13
Akiba, M.14
Izumiya, H.15
Connor, T.R.16
Suchard, M.A.17
Lemey, P.18
Mellor, D.J.19
Haydon, D.T.20
Thomson, N.R.21
more..
-
159
-
-
0027287389
-
How clonal are bacteria?
-
Maynard Smith J, Simth NH, O'Rourke M and Spratt BG, 1993. How clonal are bacteria? Proc Natl Acad Sci USA 90, 4384–4388.
-
(1993)
Proc Natl Acad Sci USA
, vol.90
, pp. 4384-4388
-
-
Maynard Smith, J.1
Simth, N.H.2
O'Rourke, M.3
Spratt, B.G.4
-
160
-
-
33846703734
-
Host-associated genetic import in Campylobacter jejuni
-
McCarthy ND, Colles FM, Dingle KE, Bagnall MC, Manning G, Maiden MC and Falush D, 2007. Host-associated genetic import in Campylobacter jejuni. Emerg Infect Dis, 13, 267–272.
-
(2007)
Emerg Infect Dis
, vol.13
, pp. 267-272
-
-
McCarthy, N.D.1
Colles, F.M.2
Dingle, K.E.3
Bagnall, M.C.4
Manning, G.5
Maiden, M.C.6
Falush, D.7
-
161
-
-
79951486830
-
Molecular determination of H antigens of Salmonella by use of a microsphere-based liquid array
-
McQuiston JR, Waters RJ, Dinsmore BA, Mikoleit ML and Fields PI, 2011. Molecular determination of H antigens of Salmonella by use of a microsphere-based liquid array. J Clin Microbiol, 49, 565–573.
-
(2011)
J Clin Microbiol
, vol.49
, pp. 565-573
-
-
McQuiston, J.R.1
Waters, R.J.2
Dinsmore, B.A.3
Mikoleit, M.L.4
Fields, P.I.5
-
162
-
-
0030827108
-
Discrimination of Campylobacter jejuni isolates by fla gene sequencing
-
Meinersmann RJ, Helsel LO, Fields PI and Hiett KL, 1997. Discrimination of Campylobacter jejuni isolates by fla gene sequencing. J Clin Microbiol, 35, 2810–2814.
-
(1997)
J Clin Microbiol
, vol.35
, pp. 2810-2814
-
-
Meinersmann, R.J.1
Helsel, L.O.2
Fields, P.I.3
Hiett, K.L.4
-
163
-
-
79960609901
-
Prospective genomic characterization of the German enterohemorrhagic Escherichia coli O104:H4 outbreak by rapid next generation sequencing technology
-
Mellmann A, Harmsen D, Cummings CA, Zentz EB, Leopold SR, Rico A, Prior K, Szczepanowski R, Ji Y, Zhang W, McLaughlin SF, Henkhaus JK, Leopold B, Bielaszewska M, Prager R, Brzoska PM, Moore RL, Guenther S, Rothberg JM and Karch H, 2011. Prospective genomic characterization of the German enterohemorrhagic Escherichia coli O104:H4 outbreak by rapid next generation sequencing technology. PLoS One, 6, e22751.
-
(2011)
PLoS One
, vol.6
-
-
Mellmann, A.1
Harmsen, D.2
Cummings, C.A.3
Zentz, E.B.4
Leopold, S.R.5
Rico, A.6
Prior, K.7
Szczepanowski, R.8
Ji, Y.9
Zhang, W.10
McLaughlin, S.F.11
Henkhaus, J.K.12
Leopold, B.13
Bielaszewska, M.14
Prager, R.15
Brzoska, P.M.16
Moore, R.L.17
Guenther, S.18
Rothberg, J.M.19
Karch, H.20
more..
-
164
-
-
84878933922
-
Campylobacter jejuni strains isolated from chicken meat harbour several virulence factors and represent a potential risk to humans
-
Melo RT, Nalevaiko PC, Mendonça EP, Borges LW, Fonseca BB and Beletti M, 2013. Campylobacter jejuni strains isolated from chicken meat harbour several virulence factors and represent a potential risk to humans. Food Control, 33(1), 227–231.
-
(2013)
Food Control
, vol.33
, Issue.1
, pp. 227-231
-
-
Melo, R.T.1
Nalevaiko, P.C.2
Mendonça, E.P.3
Borges, L.W.4
Fonseca, B.B.5
Beletti, M.6
-
165
-
-
75149189181
-
Evaluation of multiple-locus variable number of tandem-repeats analysis (MLVA) as a method for identification of clonal groups among enteropathogenic, enterohaemorrhagic and avirulent Escherichia coli O26 strains
-
Miko A, Lindstedt BA, Brandal LT, Lobersli I and Beutin L, 2010. Evaluation of multiple-locus variable number of tandem-repeats analysis (MLVA) as a method for identification of clonal groups among enteropathogenic, enterohaemorrhagic and avirulent Escherichia coli O26 strains. FEMS Microbiol Lett, 303, 137–146.
-
(2010)
FEMS Microbiol Lett
, vol.303
, pp. 137-146
-
-
Miko, A.1
Lindstedt, B.A.2
Brandal, L.T.3
Lobersli, I.4
Beutin, L.5
-
166
-
-
84875827378
-
Whole-genome mapping: a new paradigm in strain-typing technology
-
Miller JM, 2013. Whole-genome mapping: a new paradigm in strain-typing technology. J Clin Microbiol, 51, 1066–1070.
-
(2013)
J Clin Microbiol
, vol.51
, pp. 1066-1070
-
-
Miller, J.M.1
-
167
-
-
84890290025
-
-
Proceedings of the National Academy of Sciences of the United States of America. Published online before print November 25, 2013
-
Monk JM, Charusani P, Aziz RK, Lerman JA, Premyodhin N, Orth JD, Fesit AM and Palsson BØ, 2013. Genome-scale metabolic reconstructions of multiple Escherichia coli strains highlight strain-specific adaptations to nutritional environments. Proceedings of the National Academy of Sciences of the United States of America. Published online before print November 25, 2013, doi: 10.1073/pnas.1307797110
-
(2013)
Genome-scale metabolic reconstructions of multiple Escherichia coli strains highlight strain-specific adaptations to nutritional environments
-
-
Monk, J.M.1
Charusani, P.2
Aziz, R.K.3
Lerman, J.A.4
Premyodhin, N.5
Orth, J.D.6
Fesit, A.M.7
Palsson, B.Ø.8
-
168
-
-
84873745303
-
Investigation of an excess of Salmonella Enteritidis phage type 14b and MLVA type 4-7-3-13-10-2-2 in Luxembourg, Belgium and Germany during 2010
-
Mossong J, Ragimbeau C, Schuh J, Weicherding P, Peetso R, Wildemauwe C, Imberechts H, Rabsch W and Bertrand S, 2012. Investigation of an excess of Salmonella Enteritidis phage type 14b and MLVA type 4-7-3-13-10-2-2 in Luxembourg, Belgium and Germany during 2010. Bull Soc Sci Med Grand Duche Luxemb, 49–62.
-
(2012)
Bull Soc Sci Med Grand Duche Luxemb
, pp. 49-62
-
-
Mossong, J.1
Ragimbeau, C.2
Schuh, J.3
Weicherding, P.4
Peetso, R.5
Wildemauwe, C.6
Imberechts, H.7
Rabsch, W.8
Bertrand, S.9
-
169
-
-
0028065674
-
Adaptive evolution of highly mutable loci in pathogenic bacteria
-
Moxon ER, Rainey PB, Nowak MA and Lenski RE, 1994. Adaptive evolution of highly mutable loci in pathogenic bacteria. Curr Biol, 4, 24–33.
-
(1994)
Curr Biol
, vol.4
, pp. 24-33
-
-
Moxon, E.R.1
Rainey, P.B.2
Nowak, M.A.3
Lenski, R.E.4
-
170
-
-
84873808580
-
Molecular-based surveillance of campylobacteriosis in New Zealand-from source attribution to genomic epidemiology
-
Muellner P, Pleydell E, Pirie R, Baker MG, Campbell D, Carter PE and French NP, 2013. Molecular-based surveillance of campylobacteriosis in New Zealand-from source attribution to genomic epidemiology. Euro Surveill, 18.
-
(2013)
Euro Surveill
, pp. 18
-
-
Muellner, P.1
Pleydell, E.2
Pirie, R.3
Baker, M.G.4
Campbell, D.5
Carter, P.E.6
French, N.P.7
-
171
-
-
84864571431
-
Risk factors for campylobacteriosis of chicken, ruminant, and environmental origin: a combined case-control and source attribution analysis
-
Mughini Gras L, Smid JH, Wagenaar JA, de Boer AG, Havelaar AH, Friesema IH, French NP, Busani L and van Pelt W, 2012. Risk factors for campylobacteriosis of chicken, ruminant, and environmental origin: a combined case-control and source attribution analysis. PLoS One, 7, e42599.
-
(2012)
PLoS One
, vol.7
-
-
Mughini Gras, L.1
Smid, J.H.2
Wagenaar, J.A.3
de Boer, A.G.4
Havelaar, A.H.5
Friesema, I.H.6
French, N.P.7
Busani, L.8
van Pelt, W.9
-
172
-
-
84884891596
-
Tn6188 - A Novel Transposon in Listeria monocytogenes Responsible for Tolerance to Benzalkonium Chloride
-
Müller A, Rychli K, Muhterem-Uyar M, Zaiser A, Stessl B, Guinane CM, Cotter PD, Wagner M and Schmitz-Esser S, 2013. Tn6188 - A Novel Transposon in Listeria monocytogenes Responsible for Tolerance to Benzalkonium Chloride. PLoS One, 8, e76835.
-
(2013)
PLoS One
, vol.8
-
-
Müller, A.1
Rychli, K.2
Muhterem-Uyar, M.3
Zaiser, A.4
Stessl, B.5
Guinane, C.M.6
Cotter, P.D.7
Wagner, M.8
Schmitz-Esser, S.9
-
173
-
-
67650407682
-
Source attribution of food-borne zoonoses in New Zealand: a modified Hald model
-
Mullner P, Jones G, Noble A, Spencer SE, Hathaway S and French NP, 2009. Source attribution of food-borne zoonoses in New Zealand: a modified Hald model. Risk Anal, 29, 970–984.
-
(2009)
Risk Anal
, vol.29
, pp. 970-984
-
-
Mullner, P.1
Jones, G.2
Noble, A.3
Spencer, S.E.4
Hathaway, S.5
French, N.P.6
-
174
-
-
84883346759
-
Development and application of MLVA methods as a tool for inter-laboratory surveillance
-
Nadon CA, Trees E, Ng LK, Moller Nielsen E, Reimer A, Maxwell N, Kubota KA and Gerner-Smidt P, 2013. Development and application of MLVA methods as a tool for inter-laboratory surveillance. Euro Surveill, 18, 20565.
-
(2013)
Euro Surveill
, vol.18
, pp. 20565
-
-
Nadon, C.A.1
Trees, E.2
Ng, L.K.3
Moller Nielsen, E.4
Reimer, A.5
Maxwell, N.6
Kubota, K.A.7
Gerner-Smidt, P.8
-
177
-
-
2442531727
-
Whole genome comparisons of serotype 4b and 1/2a strains of the food-borne pathogen Listeria monocytogenes reveal new insights into the core genome components of this species
-
Nelson KE, Fouts DE, Mongodin EF, Ravel J, DeBoy RT, Kolonay JF, Rasko DA, Angiuoli SV, Gill SR, Paulsen IT, Peterson J, White O, Nelson WC, Nierman W, Beanan MJ, Brinkac LM, Daugherty SC, Dodson RJ, Durkin AS, Madupu R, Haft DH, Selengut J, Van Aken S, Khouri H, Fedorova N, Forberger H, Tran B, Kathariou S, Wonderling LD, Uhlich GA, Bayles DO, Luchansky JB and Fraser CM, 2004. Whole genome comparisons of serotype 4b and 1/2a strains of the food-borne pathogen Listeria monocytogenes reveal new insights into the core genome components of this species. Nucleic Acids Res, 32, 2386–2395.
-
(2004)
Nucleic Acids Res
, vol.32
, pp. 2386-2395
-
-
Nelson, K.E.1
Fouts, D.E.2
Mongodin, E.F.3
Ravel, J.4
DeBoy, R.T.5
Kolonay, J.F.6
Rasko, D.A.7
Angiuoli, S.V.8
Gill, S.R.9
Paulsen, I.T.10
Peterson, J.11
White, O.12
Nelson, W.C.13
Nierman, W.14
Beanan, M.J.15
Brinkac, L.M.16
Daugherty, S.C.17
Dodson, R.J.18
Durkin, A.S.19
Madupu, R.20
Haft, D.H.21
Selengut, J.22
Van Aken, S.23
Khouri, H.24
Fedorova, N.25
Forberger, H.26
Tran, B.27
Kathariou, S.28
Wonderling, L.D.29
Uhlich, G.A.30
Bayles, D.O.31
Luchansky, J.B.32
Fraser, C.M.33
more..
-
178
-
-
0037311986
-
Multilocus sequence typing reveals a lack of diversity among Escherichia coli O157:H7 isolates that are distinct by pulsed-field gel electrophoresis
-
Noller AC, McEllistrem MC, Stine OC, Morris JG, Jr., Boxrud DJ, Dixon B and Harrison LH, 2003. Multilocus sequence typing reveals a lack of diversity among Escherichia coli O157:H7 isolates that are distinct by pulsed-field gel electrophoresis. J Clin Microbiol, 41, 675–679.
-
(2003)
J Clin Microbiol
, vol.41
, pp. 675-679
-
-
Noller, A.C.1
McEllistrem, M.C.2
Stine, O.C.3
Morris, J.G.4
Boxrud, D.J.5
Dixon, B.6
Harrison, L.H.7
-
179
-
-
33645539749
-
Frequent recombination and low level of clonality within Salmonella enterica subspecies I
-
Octavia S and Lan R, 2006. Frequent recombination and low level of clonality within Salmonella enterica subspecies I. Microbiology, 152, 1099–1108.
-
(2006)
Microbiology
, vol.152
, pp. 1099-1108
-
-
Octavia, S.1
Lan, R.2
-
180
-
-
84884137074
-
Isolation, identification and subtyping of Campylobacter: where to from here?
-
On SL, 2013. Isolation, identification and subtyping of Campylobacter: where to from here? J Microbiol Methods, 95, 3–7.
-
(2013)
J Microbiol Methods
, vol.95
, pp. 3-7
-
-
On, S.L.1
-
181
-
-
84858750853
-
Applicability of a multiplex PCR to detect O26, O45, O103, O111, O121, O145, and O157 serogroups of Escherichia coli in cattle feces
-
Paddock Z, Shi X, Bai J and Nagaraja TG, 2012. Applicability of a multiplex PCR to detect O26, O45, O103, O111, O121, O145, and O157 serogroups of Escherichia coli in cattle feces. Vet Microbiol, 156, 381–388.
-
(2012)
Vet Microbiol
, vol.156
, pp. 381-388
-
-
Paddock, Z.1
Shi, X.2
Bai, J.3
Nagaraja, T.G.4
-
182
-
-
84884740604
-
Emergence of a multidrug-resistant (ASSuTTm) strain of Salmonella enterica serovar Typhimurium DT120 in England in 2011 and the use of multiple-locus variable-number tandem-repeat analysis in supporting outbreak investigations
-
Paranthaman K, Haroon S, Latif S, Vinnyey N, de Souza V, Welfare W, Tahir M, Cooke E, Stone K, Lane C, Peters T and Puleston R, 2013. Emergence of a multidrug-resistant (ASSuTTm) strain of Salmonella enterica serovar Typhimurium DT120 in England in 2011 and the use of multiple-locus variable-number tandem-repeat analysis in supporting outbreak investigations. Foodborne Pathog Dis, 10, 850–855.
-
(2013)
Foodborne Pathog Dis
, vol.10
, pp. 850-855
-
-
Paranthaman, K.1
Haroon, S.2
Latif, S.3
Vinnyey, N.4
de Souza, V.5
Welfare, W.6
Tahir, M.7
Cooke, E.8
Stone, K.9
Lane, C.10
Peters, T.11
Puleston, R.12
-
183
-
-
70449353875
-
Principles, applications, and limitations of automated ribotyping as a rapid method in food safety
-
Pavlic M and Griffiths MW, 2009. Principles, applications, and limitations of automated ribotyping as a rapid method in food safety. Foodborne Pathog Dis, 6, 1047–1055.
-
(2009)
Foodborne Pathog Dis
, vol.6
, pp. 1047-1055
-
-
Pavlic, M.1
Griffiths, M.W.2
-
184
-
-
85078374446
-
O43b - Real-Time Surveillance of Campylobacter Linked to Detection in Environmental Waters and Wastewater. Abstracts of posters and oral presentations from the 17th International Workshop on Campylobacter, Helicobacter and Related Organisms, 15-19 September 2013, Aberdeen
-
Available online at
-
Penny C, Mossong J, Walczak C, Devaux A, Collard D, Colin S, Fauvel B, Djabi F, Gadisseux L, Olinger C, Cauchie H-M and Ragimbeau C, 2013 O43b - Real-Time Surveillance of Campylobacter Linked to Detection in Environmental Waters and Wastewater. Abstracts of posters and oral presentations from the 17th International Workshop on Campylobacter, Helicobacter and Related Organisms, 15-19 September 2013, Aberdeen. Data suplemente of the Journal of Medical Microbiology. Available online at: jmm.sgmjournals.org/content/suppl/2013/08/30/62.Pt_9.DC1/CHROfinal.pdf.
-
(2013)
Data suplemente of the Journal of Medical Microbiology
-
-
Penny, C.1
Mossong, J.2
Walczak, C.3
Devaux, A.4
Collard, D.5
Colin, S.6
Fauvel, B.7
Djabi, F.8
Gadisseux, L.9
Olinger, C.10
Cauchie, H.-M.11
Ragimbeau, C.12
-
185
-
-
0037318226
-
The Salm-gene project - a European collaboration for DNA fingerprinting for food-related salmonellosis
-
Peters TM, Maguire C, Threlfall EJ, Fisher IS, Gill N and Gatto AJ, 2003. The Salm-gene project - a European collaboration for DNA fingerprinting for food-related salmonellosis. Euro Surveill, 8, 46–50.
-
(2003)
Euro Surveill
, vol.8
, pp. 46-50
-
-
Peters, T.M.1
Maguire, C.2
Threlfall, E.J.3
Fisher, I.S.4
Gill, N.5
Gatto, A.J.6
-
186
-
-
79957652209
-
Molecular characterization of Salmonella Typhimurium highly successful outbreak strains
-
Petersen RF, Litrup E, Larsson JT, Torpdahl M, Sorensen G, Muller L and Nielsen EM, 2011. Molecular characterization of Salmonella Typhimurium highly successful outbreak strains. Foodborne Pathog Dis, 8, 655–661.
-
(2011)
Foodborne Pathog Dis
, vol.8
, pp. 655-661
-
-
Petersen, R.F.1
Litrup, E.2
Larsson, J.T.3
Torpdahl, M.4
Sorensen, G.5
Muller, L.6
Nielsen, E.M.7
-
187
-
-
39149127422
-
International outbreak of Salmonella Senftenberg in 2007
-
070613
-
Pezzoli L, Elson R, Little C, Fisher I, Yip H, Peters T, Hampton M, De Pinna E, Coia JE, Mather HA, Brown DJ, Nielsen EM, Ethelberg S, Heck M, de Jager C and Threlfall J, 2007. International outbreak of Salmonella Senftenberg in 2007. Euro Surveill, 12, E070614 070613.
-
(2007)
Euro Surveill
, vol.12
-
-
Pezzoli, L.1
Elson, R.2
Little, C.3
Fisher, I.4
Yip, H.5
Peters, T.6
Hampton, M.7
De Pinna, E.8
Coia, J.E.9
Mather, H.A.10
Brown, D.J.11
Nielsen, E.M.12
Ethelberg, S.13
Heck, M.14
de Jager, C.15
Threlfall, J.16
-
188
-
-
77953619002
-
The ecological coherence of high bacterial taxonomic ranks
-
Philippot L, Andersson SG, Battin TJ, Prosser JI, Schimel JP, Whitman WB and Hallin S, 2010. The ecological coherence of high bacterial taxonomic ranks. Nat Rev Microbiol, 8, 523–529.
-
(2010)
Nat Rev Microbiol
, vol.8
, pp. 523-529
-
-
Philippot, L.1
Andersson, S.G.2
Battin, T.J.3
Prosser, J.I.4
Schimel, J.P.5
Whitman, W.B.6
Hallin, S.7
-
189
-
-
84879544448
-
Global Distribution of Penner Serotypes: A Systematic Review
-
Pike BL, Guerry P and Poly F, 2013. Global Distribution of Penner Serotypes: A Systematic Review. PLoS One, 8, e67375.
-
(2013)
PLoS One
, vol.8
-
-
Pike, B.L.1
Guerry, P.2
Poly, F.3
-
190
-
-
67650742212
-
Attributing the human disease burden of foodborne infections to specific sources
-
Pires SM, Evers EG, van Pelt W, Ayers T, Scallan E, Angulo FJ, Havelaar A and Hald T, 2009. Attributing the human disease burden of foodborne infections to specific sources. Foodborne Pathog Dis, 6, 417–424.
-
(2009)
Foodborne Pathog Dis
, vol.6
, pp. 417-424
-
-
Pires, S.M.1
Evers, E.G.2
van Pelt, W.3
Ayers, T.4
Scallan, E.5
Angulo, F.J.6
Havelaar, A.7
Hald, T.8
-
191
-
-
76749150390
-
Assessing the differences in public health impact of Salmonella subtypes using a bayesian microbial subtyping approach for source attribution
-
Pires SM and Hald T, 2010. Assessing the differences in public health impact of Salmonella subtypes using a bayesian microbial subtyping approach for source attribution. Foodborne Pathog Dis, 7, 143–151.
-
(2010)
Foodborne Pathog Dis
, vol.7
, pp. 143-151
-
-
Pires, S.M.1
Hald, T.2
-
192
-
-
84884018117
-
Salmonella source attribution in different European countries
-
Aberdeen, Scotland, Available online at, (last accessed on 12/12/2013)
-
Pires SM, Kaesboher A, Spitznagel H, Whalstrom H, Nichols G, David J, Van Pelt W, Baumann A and T H, 2008. Salmonella source attribution in different European countries. Proceeding in FoodMicro 2008, Aberdeen, Scotland. Available online at: aberdeen.conference-services.net/programme.asp?conferenceID=1143&action=nrog_categories (last accessed on 12/12/2013).
-
(2008)
Proceeding in FoodMicro 2008
-
-
Pires, S.M.1
Kaesboher, A.2
Spitznagel, H.3
Whalstrom, H.4
Nichols, G.5
David, J.6
Van Pelt, W.7
Baumann, A.8
-
193
-
-
84871676231
-
Estimation of the relative contribution of different food and animal sources to human Salmonella infections in the European Union
-
Question No EFSA-Q-2010-00685. Available online at, (last accessed on 12/12/2013)
-
Pires SM, Knegt L and Hald T, 2011. Estimation of the relative contribution of different food and animal sources to human Salmonella infections in the European Union. Scientific/Technical Report submitted to EFSA. Question No EFSA-Q-2010-00685. Available online at: www.efsa.europa.eu/en/supporting/doc/184e.pdf (last accessed on 12/12/2013)
-
(2011)
Scientific/Technical Report submitted to EFSA
-
-
Pires, S.M.1
Knegt, L.2
Hald, T.3
-
194
-
-
79955535745
-
Discrimination of major capsular types of Campylobacter jejuni by multiplex PCR
-
Poly F, Serichatalergs O, Schulman M, Ju J, Cates CN, Kanipes M, Mason C and Guerry P, 2011. Discrimination of major capsular types of Campylobacter jejuni by multiplex PCR. J Clin Microbiol, 49, 1750–1757.
-
(2011)
J Clin Microbiol
, vol.49
, pp. 1750-1757
-
-
Poly, F.1
Serichatalergs, O.2
Schulman, M.3
Ju, J.4
Cates, C.N.5
Kanipes, M.6
Mason, C.7
Guerry, P.8
-
195
-
-
0043072976
-
Lateral gene transfer in Salmonella
-
Porwollik S and McClelland M, 2003. Lateral gene transfer in Salmonella. Microbes Infect, 5, 977–989.
-
(2003)
Microbes Infect
, vol.5
, pp. 977-989
-
-
Porwollik, S.1
McClelland, M.2
-
196
-
-
79955861607
-
Application of multiple locus variable number of tandem repeat analysis (MLVA), phage typing and antimicrobial susceptibility testing to subtype Salmonella enterica serovar Typhimurium isolated from pig farms, pork slaughterhouses and meat producing plants in Ireland
-
Prendergast DM, O'Grady D, Fanning S, Cormican M, Delappe N, Egan J, Mannion C, Fanning J and Gutierrez M, 2011. Application of multiple locus variable number of tandem repeat analysis (MLVA), phage typing and antimicrobial susceptibility testing to subtype Salmonella enterica serovar Typhimurium isolated from pig farms, pork slaughterhouses and meat producing plants in Ireland. Food Microbiol, 28, 1087–1094.
-
(2011)
Food Microbiol
, vol.28
, pp. 1087-1094
-
-
Prendergast, D.M.1
O'Grady, D.2
Fanning, S.3
Cormican, M.4
Delappe, N.5
Egan, J.6
Mannion, C.7
Fanning, J.8
Gutierrez, M.9
-
197
-
-
0034118493
-
Inference of population structure using multilocus genotype data
-
Pritchard JK, Stephens M and Donnelly P, 2000. Inference of population structure using multilocus genotype data. Genetics, 155, 945–959.
-
(2000)
Genetics
, vol.155
, pp. 945-959
-
-
Pritchard, J.K.1
Stephens, M.2
Donnelly, P.3
-
198
-
-
0033780690
-
Competitive exclusion of Salmonella Enteritidis by Salmonella Gallinarum in poultry
-
Rabsch W, Hargis BM, Tsolis RM, Kingsley RA, Hinz KH, Tschape H and Baumler AJ, 2000. Competitive exclusion of Salmonella Enteritidis by Salmonella Gallinarum in poultry. Emerg Infect Dis, 6, 443–448.
-
(2000)
Emerg Infect Dis
, vol.6
, pp. 443-448
-
-
Rabsch, W.1
Hargis, B.M.2
Tsolis, R.M.3
Kingsley, R.A.4
Hinz, K.H.5
Tschape, H.6
Baumler, A.J.7
-
199
-
-
0036715072
-
The dual role of wild phages for horizontal gene transfer among Salmonella strains
-
Rabsch W, Mirold S, Hardt WD and Tschape H, 2002. The dual role of wild phages for horizontal gene transfer among Salmonella strains. Berl Munch Tierarztl Wochenschr, 115, 355–359.
-
(2002)
Berl Munch Tierarztl Wochenschr
, vol.115
, pp. 355-359
-
-
Rabsch, W.1
Mirold, S.2
Hardt, W.D.3
Tschape, H.4
-
200
-
-
1242352894
-
Antibiotic resistance genes, integrons and multiple antibiotic resistance in thirty-five serotypes of Salmonella enterica isolated from humans and animals in the UK
-
Randall LP, Cooles SW, Osborn MK, Piddock LJ and Woodward MJ, 2004. Antibiotic resistance genes, integrons and multiple antibiotic resistance in thirty-five serotypes of Salmonella enterica isolated from humans and animals in the UK. J Antimicrob Chemother, 53, 208–216.
-
(2004)
J Antimicrob Chemother
, vol.53
, pp. 208-216
-
-
Randall, L.P.1
Cooles, S.W.2
Osborn, M.K.3
Piddock, L.J.4
Woodward, M.J.5
-
201
-
-
84878488611
-
Comparison of typing methods with a new procedure based on sequence characterization for Salmonella serovar prediction
-
Ranieri ML, Shi C, Moreno Switt AI, den Bakker HC and Wiedmann M, 2013. Comparison of typing methods with a new procedure based on sequence characterization for Salmonella serovar prediction. J Clin Microbiol, 51, 1786–1797.
-
(2013)
J Clin Microbiol
, vol.51
, pp. 1786-1797
-
-
Ranieri, M.L.1
Shi, C.2
Moreno Switt, A.I.3
den Bakker, H.C.4
Wiedmann, M.5
-
202
-
-
80052150179
-
Origins of the E. coli strain causing an outbreak of hemolytic-uremic syndrome in Germany
-
Rasko DA, Webster DR, Sahl JW, Bashir A, Boisen N, Scheutz F, Paxinos EE, Sebra R, Chin CS, Iliopoulos D, Klammer A, Peluso P, Lee L, Kislyuk AO, Bullard J, Kasarskis A, Wang S, Eid J, Rank D, Redman JC, Steyert SR, Frimodt-Moller J, Struve C, Petersen AM, Krogfelt KA, Nataro JP, Schadt EE and Waldor MK, 2011. Origins of the E. coli strain causing an outbreak of hemolytic-uremic syndrome in Germany. N Engl J Med, 365, 709–717.
-
(2011)
N Engl J Med
, vol.365
, pp. 709-717
-
-
Rasko, D.A.1
Webster, D.R.2
Sahl, J.W.3
Bashir, A.4
Boisen, N.5
Scheutz, F.6
Paxinos, E.E.7
Sebra, R.8
Chin, C.S.9
Iliopoulos, D.10
Klammer, A.11
Peluso, P.12
Lee, L.13
Kislyuk, A.O.14
Bullard, J.15
Kasarskis, A.16
Wang, S.17
Eid, J.18
Rank, D.19
Redman, J.C.20
Steyert, S.R.21
Frimodt-Moller, J.22
Struve, C.23
Petersen, A.M.24
Krogfelt, K.A.25
Nataro, J.P.26
Schadt, E.E.27
Waldor, M.K.28
more..
-
203
-
-
33645707707
-
Standardization of pulsed-field gel electrophoresis protocols for the subtyping of Escherichia coli O157:H7, Salmonella, and Shigella for PulseNet
-
Ribot EM, Fair MA, Gautom R, Cameron DN, Hunter SB, Swaminathan B and Barrett TJ, 2006. Standardization of pulsed-field gel electrophoresis protocols for the subtyping of Escherichia coli O157:H7, Salmonella, and Shigella for PulseNet. Foodborne Pathog Dis, 3, 59–67.
-
(2006)
Foodborne Pathog Dis
, vol.3
, pp. 59-67
-
-
Ribot, E.M.1
Fair, M.A.2
Gautom, R.3
Cameron, D.N.4
Hunter, S.B.5
Swaminathan, B.6
Barrett, T.J.7
-
204
-
-
0035004597
-
Rapid pulsed-field gel electrophoresis protocol for subtyping of Campylobacter jejuni
-
Ribot EM, Fitzgerald C, Kubota K, Swaminathan B and Barrett TJ, 2001. Rapid pulsed-field gel electrophoresis protocol for subtyping of Campylobacter jejuni. J Clin Microbiol, 39, 1889–1894.
-
(2001)
J Clin Microbiol
, vol.39
, pp. 1889-1894
-
-
Ribot, E.M.1
Fitzgerald, C.2
Kubota, K.3
Swaminathan, B.4
Barrett, T.J.5
-
205
-
-
0034096652
-
Amplified fragment length polymorphism (AFLP) analysis of Listeria monocytogenes
-
Ripabelli G, McLauchin J and Threlfall EJ, 2000. Amplified fragment length polymorphism (AFLP) analysis of Listeria monocytogenes. Syst Appl Microbiol, 23, 132–136.
-
(2000)
Syst Appl Microbiol
, vol.23
, pp. 132-136
-
-
Ripabelli, G.1
McLauchin, J.2
Threlfall, E.J.3
-
206
-
-
0021861466
-
Serotyping of Campylobacter jejuni, Campylobacter coli, and Campylobacter laridis from domestic and wild animals
-
Rosef O, Kapperud G, Lauwers S and Gondrosen B, 1985. Serotyping of Campylobacter jejuni, Campylobacter coli, and Campylobacter laridis from domestic and wild animals. Appl Environ Microbiol, 49, 1507–1510.
-
(1985)
Appl Environ Microbiol
, vol.49
, pp. 1507-1510
-
-
Rosef, O.1
Kapperud, G.2
Lauwers, S.3
Gondrosen, B.4
-
207
-
-
84871555703
-
Integrated clinical genomics: new horizon for diagnostic and biomarker discoveries in cancer
-
Roukos DH, 2013. Integrated clinical genomics: new horizon for diagnostic and biomarker discoveries in cancer. Expert Rev Mol Diagn, 13, 1–4.
-
(2013)
Expert Rev Mol Diagn
, vol.13
, pp. 1-4
-
-
Roukos, D.H.1
-
208
-
-
84873874372
-
Overview of molecular typing methods for outbreak detection and epidemiological surveillance
-
Sabat AJ, Budimir A, Nashev D, Sa-Leao R, van Dijl JM, Laurent F, Grundmann H, Friedrich AW and Esgem, 2013. Overview of molecular typing methods for outbreak detection and epidemiological surveillance. Eurosurveillance, 18, 17–30.
-
(2013)
Eurosurveillance
, vol.18
, pp. 17-30
-
-
Sabat, A.J.1
Budimir, A.2
Nashev, D.3
Sa-Leao, R.4
van Dijl, J.M.5
Laurent, F.6
Grundmann, H.7
Friedrich, A.W.8
Esgem9
-
209
-
-
84863154367
-
Molecular evidence for zoonotic transmission of an emergent, highly pathogenic Campylobacter jejuni clone in the United States
-
Sahin O, Fitzgerald C, Stroika S, Zhao S, Sippy RJ, Kwan P, Plummer PJ, Han J, Yaeger MJ and Zhang Q, 2012. Molecular evidence for zoonotic transmission of an emergent, highly pathogenic Campylobacter jejuni clone in the United States. J Clin Microbiol, 50, 680–687.
-
(2012)
J Clin Microbiol
, vol.50
, pp. 680-687
-
-
Sahin, O.1
Fitzgerald, C.2
Stroika, S.3
Zhao, S.4
Sippy, R.J.5
Kwan, P.6
Plummer, P.J.7
Han, J.8
Yaeger, M.J.9
Zhang, Q.10
-
210
-
-
0032032193
-
Characterisation of integrons and antibiotic resistance genes in Danish multiresistant Salmonella enterica Typhimurium DT104
-
Sandvang D, Aarestrup FM and Jensen LB, 2006. Characterisation of integrons and antibiotic resistance genes in Danish multiresistant Salmonella enterica Typhimurium DT104. FEMS microbiology letters, 160(1), 37–41.
-
(2006)
FEMS microbiology letters
, vol.160
, Issue.1
, pp. 37-41
-
-
Sandvang, D.1
Aarestrup, F.M.2
Jensen, L.B.3
-
211
-
-
78649644200
-
Evolution and population structure of Salmonella enterica serovar Newport
-
Sangal V, Harbottle H, Mazzoni CJ, Helmuth R, Guerra B, Didelot X, Paglietti B, Rabsch W, Brisse S, Weill FX, Roumagnac P and Achtman M, 2010. Evolution and population structure of Salmonella enterica serovar Newport. J Bacteriol, 192, 6465–6476.
-
(2010)
J Bacteriol
, vol.192
, pp. 6465-6476
-
-
Sangal, V.1
Harbottle, H.2
Mazzoni, C.J.3
Helmuth, R.4
Guerra, B.5
Didelot, X.6
Paglietti, B.7
Rabsch, W.8
Brisse, S.9
Weill, F.X.10
Roumagnac, P.11
Achtman, M.12
-
212
-
-
0035871825
-
Serotype distribution of Salmonella isolates from food animals after slaughter differs from that of isolates found in humans
-
Sarwari AR, Magder LS, Levine P, McNamara AM, Knower S, Armstrong GL, Etzel R, Hollingsworth J and Morris JG, Jr., 2001. Serotype distribution of Salmonella isolates from food animals after slaughter differs from that of isolates found in humans. J Infect Dis, 183, 1295–1299.
-
(2001)
J Infect Dis
, vol.183
, pp. 1295-1299
-
-
Sarwari, A.R.1
Magder, L.S.2
Levine, P.3
McNamara, A.M.4
Knower, S.5
Armstrong, G.L.6
Etzel, R.7
Hollingsworth, J.8
Morris, J.G.9
-
213
-
-
84865192343
-
Multicenter evaluation of a sequence-based protocol for subtyping Shiga toxins and standardizing Stx nomenclature
-
Scheutz F, Teel LD, Beutin L, Pierard D, Buvens G, Karch H, Mellmann A, Caprioli A, Tozzoli R, Morabito S, Strockbine NA, Melton-Celsa AR, Sanchez M, Persson S and O'Brien AD, 2012. Multicenter evaluation of a sequence-based protocol for subtyping Shiga toxins and standardizing Stx nomenclature. J Clin Microbiol, 50, 2951–2963.
-
(2012)
J Clin Microbiol
, vol.50
, pp. 2951-2963
-
-
Scheutz, F.1
Teel, L.D.2
Beutin, L.3
Pierard, D.4
Buvens, G.5
Karch, H.6
Mellmann, A.7
Caprioli, A.8
Tozzoli, R.9
Morabito, S.10
Strockbine, N.A.11
Melton-Celsa, A.R.12
Sanchez, M.13
Persson, S.14
O'Brien, A.D.15
-
214
-
-
84881548286
-
Computational meta'omics for microbial community studies
-
Segata N, Boernigen D, Tickle TL, Morgan XC, Garrett WS and Huttenhower C, 2013. Computational meta'omics for microbial community studies. Mol Syst Biol, 9, 666.
-
(2013)
Mol Syst Biol
, vol.9
, pp. 666
-
-
Segata, N.1
Boernigen, D.2
Tickle, T.L.3
Morgan, X.C.4
Garrett, W.S.5
Huttenhower, C.6
-
215
-
-
84872243390
-
The combination of CRISPR-MVLST and PFGE provides increased discriminatory power for differentiating human clinical isolates of Salmonella enterica subsp. enterica serovar Enteritidis
-
Shariat N, DiMarzio MJ, Yin S, Dettinger L, Sandt CH, Lute JR, Barrangou R and Dudley EG, 2013a. The combination of CRISPR-MVLST and PFGE provides increased discriminatory power for differentiating human clinical isolates of Salmonella enterica subsp. enterica serovar Enteritidis. Food Microbiol, 34, 164–173.
-
(2013)
Food Microbiol
, vol.34
, pp. 164-173
-
-
Shariat, N.1
DiMarzio, M.J.2
Yin, S.3
Dettinger, L.4
Sandt, C.H.5
Lute, J.R.6
Barrangou, R.7
Dudley, E.G.8
-
216
-
-
84879442753
-
Subtyping of Salmonella enterica serovar Newport outbreak isolates by CRISPR-MVLST and determination of the relationship between CRISPR-MVLST and PFGE results
-
Shariat N, Kirchner MK, Sandt CH, Trees E, Barrangou R and Dudley EG, 2013b. Subtyping of Salmonella enterica serovar Newport outbreak isolates by CRISPR-MVLST and determination of the relationship between CRISPR-MVLST and PFGE results. J Clin Microbiol, 51, 2328–2336.
-
(2013)
J Clin Microbiol
, vol.51
, pp. 2328-2336
-
-
Shariat, N.1
Kirchner, M.K.2
Sandt, C.H.3
Trees, E.4
Barrangou, R.5
Dudley, E.G.6
-
217
-
-
84874807606
-
Evaluation of the impact of quorum sensing transcriptional regulator SdiA on long-term persistence and fecal shedding of Escherichia coli O157:H7 in weaned calves
-
Sharma VK and Bearson SM, 2013. Evaluation of the impact of quorum sensing transcriptional regulator SdiA on long-term persistence and fecal shedding of Escherichia coli O157:H7 in weaned calves. Microb Pathog, 57, 21–26.
-
(2013)
Microb Pathog
, vol.57
, pp. 21-26
-
-
Sharma, V.K.1
Bearson, S.M.2
-
218
-
-
84875786329
-
Molecular subtyping and virulence gene analysis of Listeria monocytogenes isolates from food
-
Shen J, Rump L, Zhang Y, Chen Y, Wang X and Meng J, 2013. Molecular subtyping and virulence gene analysis of Listeria monocytogenes isolates from food. Food microbiology, 35(1), 58–64.
-
(2013)
Food microbiology
, vol.35
, Issue.1
, pp. 58-64
-
-
Shen, J.1
Rump, L.2
Zhang, Y.3
Chen, Y.4
Wang, X.5
Meng, J.6
-
219
-
-
42049090179
-
Convergence of Campylobacter species: implications for bacterial evolution
-
Sheppard SK, McCarthy ND, Falush D and Maiden MC, 2008. Convergence of Campylobacter species: implications for bacterial evolution. Science, 320, 237–239.
-
(2008)
Science
, vol.320
, pp. 237-239
-
-
Sheppard, S.K.1
McCarthy, N.D.2
Falush, D.3
Maiden, M.C.4
-
220
-
-
63649146832
-
Campylobacter genotyping to determine the source of human infection
-
Sheppard SK, Dallas JF, Strachan NJ, MacRae M, McCarthy ND, Wilson DJ, Gormley FJ, Falush D, Ogden ID, Maiden MC and Forbes KJ, 2009. Campylobacter genotyping to determine the source of human infection. Clin Infect Dis, 48, 1072–1078.
-
(2009)
Clin Infect Dis
, vol.48
, pp. 1072-1078
-
-
Sheppard, S.K.1
Dallas, J.F.2
Strachan, N.J.3
MacRae, M.4
McCarthy, N.D.5
Wilson, D.J.6
Gormley, F.J.7
Falush, D.8
Ogden, I.D.9
Maiden, M.C.10
Forbes, K.J.11
-
221
-
-
80051669503
-
Niche segregation and genetic structure of Campylobacter jejuni populations from wild and agricultural host species
-
Sheppard SK, Colles FM, McCarthy ND, Strachan NJ, Ogden ID, Forbes KJ, Dallas JF and Maiden MC, 2011a. Niche segregation and genetic structure of Campylobacter jejuni populations from wild and agricultural host species. Mol Ecol, 20, 3484–3490.
-
(2011)
Mol Ecol
, vol.20
, pp. 3484-3490
-
-
Sheppard, S.K.1
Colles, F.M.2
McCarthy, N.D.3
Strachan, N.J.4
Ogden, I.D.5
Forbes, K.J.6
Dallas, J.F.7
Maiden, M.C.8
-
222
-
-
79953727869
-
Introgression in the genus Campylobacter: generation and spread of mosaic alleles
-
Sheppard SK, McCarthy ND, Jolley KA and Maiden MC, 2011b. Introgression in the genus Campylobacter: generation and spread of mosaic alleles. Microbiology, 157, 1066–1074.
-
(2011)
Microbiology
, vol.157
, pp. 1066-1074
-
-
Sheppard, S.K.1
McCarthy, N.D.2
Jolley, K.A.3
Maiden, M.C.4
-
223
-
-
84873085208
-
Progressive genome-wide introgression in agricultural Campylobacter coli
-
Sheppard SK, Didelot X, Jolley KA, Darling AE, Pascoe B, Meric G, Kelly DJ, Cody A, Colles FM, Strachan NJ, Ogden ID, Forbes K, French NP, Carter P, Miller WG, McCarthy ND, Owen R, Litrup E, Egholm M, Affourtit JP, Bentley SD, Parkhill J, Maiden MC and Falush D, 2013. Progressive genome-wide introgression in agricultural Campylobacter coli. Mol Ecol, 22, 1051–1064.
-
(2013)
Mol Ecol
, vol.22
, pp. 1051-1064
-
-
Sheppard, S.K.1
Didelot, X.2
Jolley, K.A.3
Darling, A.E.4
Pascoe, B.5
Meric, G.6
Kelly, D.J.7
Cody, A.8
Colles, F.M.9
Strachan, N.J.10
Ogden, I.D.11
Forbes, K.12
French, N.P.13
Carter, P.14
Miller, W.G.15
McCarthy, N.D.16
Owen, R.17
Litrup, E.18
Egholm, M.19
Affourtit, J.P.20
Bentley, S.D.21
Parkhill, J.22
Maiden, M.C.23
Falush, D.24
more..
-
224
-
-
84880366261
-
Genome-wide association study identifies vitamin B5 biosynthesis as a host specificity factor in Campylobacter
-
Sheppard SK, Didelot X, Meric G, Torralbo A, Jolley KA, Kelly DJ, Bentley SD, Maiden MC, Parkhill J and Falush D, 2013b. Genome-wide association study identifies vitamin B5 biosynthesis as a host specificity factor in Campylobacter. Proc Natl Acad Sci U S A, 110, 11923–11927.
-
(2013)
Proc Natl Acad Sci U S A
, vol.110
, pp. 11923-11927
-
-
Sheppard, S.K.1
Didelot, X.2
Meric, G.3
Torralbo, A.4
Jolley, K.A.5
Kelly, D.J.6
Bentley, S.D.7
Maiden, M.C.8
Parkhill, J.9
Falush, D.10
-
225
-
-
84880743434
-
Emergence of Salmonella genomic island 1 (SGI1) among Proteus mirabilis clinical isolates in Dijon, France
-
Siebor E and Neuwirth C, 2013. Emergence of Salmonella genomic island 1 (SGI1) among Proteus mirabilis clinical isolates in Dijon, France. J Antimicrob Chemother, 68, 1750–1756.
-
(2013)
J Antimicrob Chemother
, vol.68
, pp. 1750-1756
-
-
Siebor, E.1
Neuwirth, C.2
-
226
-
-
0028921628
-
Acetylation (O-factor 5) affects the structural and immunological properties of Salmonella Typhimurium lipopolysaccharide O antigen
-
Slauch JM, Mahan MJ, Michetti P, Neutra MR and Mekalanos JJ, 1995. Acetylation (O-factor 5) affects the structural and immunological properties of Salmonella Typhimurium lipopolysaccharide O antigen. Infect Immun, 63, 437–441.
-
(1995)
Infect Immun
, vol.63
, pp. 437-441
-
-
Slauch, J.M.1
Mahan, M.J.2
Michetti, P.3
Neutra, M.R.4
Mekalanos, J.J.5
-
227
-
-
84873563283
-
Practicalities of using non-local or non-recent multilocus sequence typing data for source attribution in space and time of human campylobacteriosis
-
Smid JH, Mughini Gras L, de Boer AG, French NP, Havelaar AH, Wagenaar JA and van Pelt W, 2013. Practicalities of using non-local or non-recent multilocus sequence typing data for source attribution in space and time of human campylobacteriosis. PLoS One, 8, e55029.
-
(2013)
PLoS One
, vol.8
-
-
Smid, J.H.1
Mughini Gras, L.2
de Boer, A.G.3
French, N.P.4
Havelaar, A.H.5
Wagenaar, J.A.6
van Pelt, W.7
-
228
-
-
84872314600
-
A verocytotoxin-producing E. coli outbreak with a surprisingly high risk of haemolytic uraemic syndrome, Denmark, September-October 2012
-
Soborg B, Lassen SG, Muller L, Jensen T, Ethelberg S, Molbak K and Scheutz F, 2013. A verocytotoxin-producing E. coli outbreak with a surprisingly high risk of haemolytic uraemic syndrome, Denmark, September-October 2012. Euro Surveill, 18.
-
(2013)
Euro Surveill
, pp. 18
-
-
Soborg, B.1
Lassen, S.G.2
Muller, L.3
Jensen, T.4
Ethelberg, S.5
Molbak, K.6
Scheutz, F.7
-
229
-
-
84875606887
-
Analysis of pulsed field gel electrophoresis profiles using multiple enzymes for predicting potential source reservoirs for strains of Salmonella Enteritidis and Salmonella Typhimurium isolated from humans
-
Son I, Zheng J, Keys CE, Zhao S, Meng J and Brown EW, 2013. Analysis of pulsed field gel electrophoresis profiles using multiple enzymes for predicting potential source reservoirs for strains of Salmonella Enteritidis and Salmonella Typhimurium isolated from humans. Infect Genet Evol, 16, 226–233.
-
(2013)
Infect Genet Evol
, vol.16
, pp. 226-233
-
-
Son, I.1
Zheng, J.2
Keys, C.E.3
Zhao, S.4
Meng, J.5
Brown, E.W.6
-
230
-
-
10444224623
-
Displaying the relatedness among isolates of bacterial species – the eBURST approach
-
Spratt BG, Hanage WP, Li B, Aanensen DM and Feil EJ, 2004. Displaying the relatedness among isolates of bacterial species – the eBURST approach. FEMS Microbiol Lett, 241, 129–134.
-
(2004)
FEMS Microbiol Lett
, vol.241
, pp. 129-134
-
-
Spratt, B.G.1
Hanage, W.P.2
Li, B.3
Aanensen, D.M.4
Feil, E.J.5
-
232
-
-
65649154619
-
Attribution of Campylobacter infections in northeast Scotland to specific sources by use of multilocus sequence typing
-
Strachan NJ, Gormley FJ, Rotariu O, Ogden ID, Miller G, Dunn GM, Sheppard SK, Dallas JF, Reid TM, Howie H, Maiden MC and Forbes KJ, 2009. Attribution of Campylobacter infections in northeast Scotland to specific sources by use of multilocus sequence typing. J Infect Dis, 199, 1205–1208.
-
(2009)
J Infect Dis
, vol.199
, pp. 1205-1208
-
-
Strachan, N.J.1
Gormley, F.J.2
Rotariu, O.3
Ogden, I.D.4
Miller, G.5
Dunn, G.M.6
Sheppard, S.K.7
Dallas, J.F.8
Reid, T.M.9
Howie, H.10
Maiden, M.C.11
Forbes, K.J.12
-
233
-
-
0032149842
-
Molecular epidemiologic typing systems of bacterial pathogens: current issues and perspectives
-
Struelens MJ, 1998. Molecular epidemiologic typing systems of bacterial pathogens: current issues and perspectives. Mem Inst Oswaldo Cruz 93, 581–585.
-
(1998)
Mem Inst Oswaldo Cruz
, vol.93
, pp. 581-585
-
-
Struelens, M.J.1
-
234
-
-
84873847270
-
From molecular to genomic epidemiology: transforming surveillance and control of infectious diseases
-
Struelens MJ and Brisse S, 2013. From molecular to genomic epidemiology: transforming surveillance and control of infectious diseases. Euro Surveill, 18, 20386.
-
(2013)
Euro Surveill
, vol.18
, pp. 20386
-
-
Struelens, M.J.1
Brisse, S.2
-
235
-
-
84874726763
-
Virulence gene profiling and pathogenicity characterization of non-typhoidal Salmonella accounted for invasive disease in humans
-
Suez J, Porwollik S, Dagan A, Marzel A, Schorr YI, Desai PT, Agmon V, McClelland M, Rahav G and Gal-Mor O, 2013. Virulence gene profiling and pathogenicity characterization of non-typhoidal Salmonella accounted for invasive disease in humans. PLoS One, 8, e58449.
-
(2013)
PLoS One
, vol.8
-
-
Suez, J.1
Porwollik, S.2
Dagan, A.3
Marzel, A.4
Schorr, Y.I.5
Desai, P.T.6
Agmon, V.7
McClelland, M.8
Rahav, G.9
Gal-Mor, O.10
-
236
-
-
0035351051
-
PulseNet: the molecular subtyping network for foodborne bacterial disease surveillance, United States
-
Swaminathan B, Barrett TJ, Hunter SB and Tauxe RV, 2001. PulseNet: the molecular subtyping network for foodborne bacterial disease surveillance, United States. Emerg Infect Dis, 7, 382–389.
-
(2001)
Emerg Infect Dis
, vol.7
, pp. 382-389
-
-
Swaminathan, B.1
Barrett, T.J.2
Hunter, S.B.3
Tauxe, R.V.4
-
237
-
-
33645721090
-
Building PulseNet International: an interconnected system of laboratory networks to facilitate timely public health recognition and response to foodborne disease outbreaks and emerging foodborne diseases
-
Swaminathan B, Gerner-Smidt P, Ng LK, Lukinmaa S, Kam KM, Rolando S, Gutierrez EP and Binsztein N, 2006. Building PulseNet International: an interconnected system of laboratory networks to facilitate timely public health recognition and response to foodborne disease outbreaks and emerging foodborne diseases. Foodborne Pathog Dis, 3, 36–50.
-
(2006)
Foodborne Pathog Dis
, vol.3
, pp. 36-50
-
-
Swaminathan, B.1
Gerner-Smidt, P.2
Ng, L.K.3
Lukinmaa, S.4
Kam, K.M.5
Rolando, S.6
Gutierrez, E.P.7
Binsztein, N.8
-
238
-
-
84866452259
-
How a sugary bug gets through the day: recent developments in understanding fundamental processes impacting Campylobacter jejuni pathogenesis
-
Szymanski CM and Gaynor EC, 2012. How a sugary bug gets through the day: recent developments in understanding fundamental processes impacting Campylobacter jejuni pathogenesis. Gut Microbes, 3, 135–144.
-
(2012)
Gut Microbes
, vol.3
, pp. 135-144
-
-
Szymanski, C.M.1
Gaynor, E.C.2
-
239
-
-
84880183950
-
Defining natural species of bacteria: clear-cut genomic boundaries revealed by a turning point in nucleotide sequence divergence
-
Tang L, Li Y, Deng X, Johnston RN, Liu GR and Liu SL, 2013. Defining natural species of bacteria: clear-cut genomic boundaries revealed by a turning point in nucleotide sequence divergence. BMC Genomics, 14, 489.
-
(2013)
BMC Genomics
, vol.14
, pp. 489
-
-
Tang, L.1
Li, Y.2
Deng, X.3
Johnston, R.N.4
Liu, G.R.5
Liu, S.L.6
-
240
-
-
84861227065
-
Development of a sequence typing scheme for differentiation of Salmonella Enteritidis strains
-
Tankouo-Sandjong B, Kinde H and Wallace I, 2012. Development of a sequence typing scheme for differentiation of Salmonella Enteritidis strains. FEMS Microbiol Lett, 331, 165–175.
-
(2012)
FEMS Microbiol Lett
, vol.331
, pp. 165-175
-
-
Tankouo-Sandjong, B.1
Kinde, H.2
Wallace, I.3
-
241
-
-
84875988295
-
Common source outbreaks of Campylobacter infection in the USA, 1997-2008
-
Taylor EV, Herman KM, Ailes EC, Fitzgerald C, Yoder JS, Mahon BE and Tauxe RV, 2012. Common source outbreaks of Campylobacter infection in the USA, 1997-2008. Epidemiol Infect, 141, 987–996.
-
(2012)
Epidemiol Infect
, vol.141
, pp. 987-996
-
-
Taylor, E.V.1
Herman, K.M.2
Ailes, E.C.3
Fitzgerald, C.4
Yoder, J.S.5
Mahon, B.E.6
Tauxe, R.V.7
-
242
-
-
84883987386
-
Salmonella source attribution in Japan by a microbial subtyping approach
-
Toyofuku H, Pires SM and Hald T, 2011. Salmonella source attribution in Japan by a microbial subtyping approach. EcoHealth (ISSN: 1612-9202), 7 (Suppl.1): S22–S23.
-
(2011)
EcoHealth
, vol.7
, pp. S22-S23
-
-
Toyofuku, H.1
Pires, S.M.2
Hald, T.3
-
243
-
-
84889793277
-
Precise Dissection of an Escherichia coli O157:H7 Outbreak by Single Nucleotide Polymorphism Analysis
-
Turabelidze G, Lawrence SJ, Gao H, Sodergren E, Weinstock GM, Abubucker S, Wylie T, Mitreva M, Shaikh N, Gautom R and Tarr PI, 2013. Precise Dissection of an Escherichia coli O157:H7 Outbreak by Single Nucleotide Polymorphism Analysis. J Clin Microbiol, 51, 3950–3954.
-
(2013)
J Clin Microbiol
, vol.51
, pp. 3950-3954
-
-
Turabelidze, G.1
Lawrence, S.J.2
Gao, H.3
Sodergren, E.4
Weinstock, G.M.5
Abubucker, S.6
Wylie, T.7
Mitreva, M.8
Shaikh, N.9
Gautom, R.10
Tarr, P.I.11
-
244
-
-
84871702878
-
Public health value of next-generation DNA sequencing of enterohemorrhagic Escherichia coli isolates from an outbreak
-
Underwood AP, Dallman T, Thomson NR, Williams M, Harker K, Perry N, Adak B, Willshaw G, Cheasty T, Green J, Dougan G, Parkhill J and Wain J, 2013. Public health value of next-generation DNA sequencing of enterohemorrhagic Escherichia coli isolates from an outbreak. J Clin Microbiol, 51, 232–237.
-
(2013)
J Clin Microbiol
, vol.51
, pp. 232-237
-
-
Underwood, A.P.1
Dallman, T.2
Thomson, N.R.3
Williams, M.4
Harker, K.5
Perry, N.6
Adak, B.7
Willshaw, G.8
Cheasty, T.9
Green, J.10
Dougan, G.11
Parkhill, J.12
Wain, J.13
-
245
-
-
85078374808
-
-
Abstract Ref. RR11. Med-Vet-Net Association International Scientific Conference., DTU, Lyngby, Denmark, 24-25 June 2013. Available online at, (last accessed on 16/12/2013)
-
Valentin L, Sharp H, Appel B and Kasbohrer A, 2013. Source attribution of foodborne ESBL-E. coli in Germany. Abstract Ref. RR11. Med-Vet-Net Association International Scientific Conference. DTU, Lyngby, Denmark, 24-25 June 2013. Available online at: www.medvetnet2013.eu/fileadmin/filer/David/MedVetNet2013/MVN2013ConfAbstractBook_v1.0.pdf (last accessed on 16/12/2013).
-
(2013)
Source attribution of foodborne ESBL-E. coli in Germany
-
-
Valentin, L.1
Sharp, H.2
Appel, B.3
Kasbohrer, A.4
-
246
-
-
70449571432
-
-
Available online at, (last accessed on 13/12/2013)
-
Valkenburgh S, van Oosterom R, Stenvers O, Aalten M, Braks M, Schimmer B, Van De Giessen AW, Van Pelt W and Langelaar M, 2007. Zoonoses and zoonotic agents in humans, food, animals and feed in The Netherlands 2003-2006. Available online at: www.rivm.nl/bibliotheek/rapporten/330152001.pdf (last accessed on 13/12/2013).
-
(2007)
Zoonoses and zoonotic agents in humans, food, animals and feed in The Netherlands 2003-2006
-
-
Valkenburgh, S.1
van Oosterom, R.2
Stenvers, O.3
Aalten, M.4
Braks, M.5
Schimmer, B.6
Van De Giessen, A.W.7
Van Pelt, W.8
Langelaar, M.9
-
247
-
-
36949032155
-
Active migration into the subcellular space precedes Campylobacter jejuni invasion of epithelial cells
-
van Alphen LB, Bleumink-Pluym NM, Rochat KD, van Balkom BW, Wosten MM and van Putten JP, 2008. Active migration into the subcellular space precedes Campylobacter jejuni invasion of epithelial cells. Cell Microbiol, 10, 53–66.
-
(2008)
Cell Microbiol
, vol.10
, pp. 53-66
-
-
van Alphen, L.B.1
Bleumink-Pluym, N.M.2
Rochat, K.D.3
van Balkom, B.W.4
Wosten, M.M.5
van Putten, J.P.6
-
248
-
-
0034943577
-
Role of genomic typing in taxonomy, evolutionary genetics, and microbial epidemiology
-
van Belkum A, Struelens M, de Visser A, Verbrugh H and Tibayrenc M, 2001. Role of genomic typing in taxonomy, evolutionary genetics, and microbial epidemiology. Clin Microbiol Rev, 14, 547–560.
-
(2001)
Clin Microbiol Rev
, vol.14
, pp. 547-560
-
-
van Belkum, A.1
Struelens, M.2
de Visser, A.3
Verbrugh, H.4
Tibayrenc, M.5
-
249
-
-
34548246397
-
Guidelines for the validation and application of typing methods for use in bacterial epidemiology
-
van Belkum A, Tassios PT, Dijkshoorn L, Haeggman S, Cookson B, Fry NK, Fussing V, Green J, Feil E, Gerner-Smidt P, Brisse S and Struelens M, 2007. Guidelines for the validation and application of typing methods for use in bacterial epidemiology. Clin Microbiol Infect, 13 Suppl 3, 1–46.
-
(2007)
Clin Microbiol Infect
, vol.13
, pp. 1-46
-
-
van Belkum, A.1
Tassios, P.T.2
Dijkshoorn, L.3
Haeggman, S.4
Cookson, B.5
Fry, N.K.6
Fussing, V.7
Green, J.8
Feil, E.9
Gerner-Smidt, P.10
Brisse, S.11
Struelens, M.12
-
250
-
-
0001621461
-
Oorsprong, omvang en kosten van humane salmonellose. Deel 1. Oorsprong van humane salmonellose met betrekking tot varken, rund, kip, ei en overige bronnen
-
Van Pelt W, Van De Giessen AW, Leeuwen WJ, Wannet W, Henken AM and Evers EG, 1999. Oorsprong, omvang en kosten van humane salmonellose. Deel 1. Oorsprong van humane salmonellose met betrekking tot varken, rund, kip, ei en overige bronnen. Infectieziekten Bulletin, 240–243.
-
(1999)
Infectieziekten Bulletin
, pp. 240-243
-
-
Van Pelt, W.1
Van De Giessen, A.W.2
Leeuwen, W.J.3
Wannet, W.4
Henken, A.M.5
Evers, E.G.6
-
251
-
-
84869868071
-
Real-time PCRs assay for serogrouping Listeria monocytogenes and differentiation from other Listeria spp
-
Vitullo M, Grant KA, Sammarco ML, Tamburro M, Ripabelli G and Amar CF, 2013. Real-time PCRs assay for serogrouping Listeria monocytogenes and differentiation from other Listeria spp. Mol Cell Probes, 27, 68–70.
-
(2013)
Mol Cell Probes
, vol.27
, pp. 68-70
-
-
Vitullo, M.1
Grant, K.A.2
Sammarco, M.L.3
Tamburro, M.4
Ripabelli, G.5
Amar, C.F.6
-
253
-
-
80052165933
-
Source attribution of human Salmonella cases in Sweden
-
Wahlstrom H, Andersson Y, Plym-Forshell L and Pires SM, 2010. Source attribution of human Salmonella cases in Sweden. Epidemiol Infect, 139, 1246–1253.
-
(2010)
Epidemiol Infect
, vol.139
, pp. 1246-1253
-
-
Wahlstrom, H.1
Andersson, Y.2
Plym-Forshell, L.3
Pires, S.M.4
-
254
-
-
84874730194
-
Specific properties of enteropathogenic Escherichia coli isolates from diarrheal patients and comparison to strains from foods and fecal specimens from cattle, swine, and healthy carriers in Osaka City, Japan
-
Wang L, Wakushima M, Aota T, Yoshida Y, Kita T, Maehara T, Ogasawara J, Choi C, Kamata Y, Hara-Kudo Y and Nishikawa Y, 2013. Specific properties of enteropathogenic Escherichia coli isolates from diarrheal patients and comparison to strains from foods and fecal specimens from cattle, swine, and healthy carriers in Osaka City, Japan. Appl Environ Microbiol, 79, 1232–1240.
-
(2013)
Appl Environ Microbiol
, vol.79
, pp. 1232-1240
-
-
Wang, L.1
Wakushima, M.2
Aota, T.3
Yoshida, Y.4
Kita, T.5
Maehara, T.6
Ogasawara, J.7
Choi, C.8
Kamata, Y.9
Hara-Kudo, Y.10
Nishikawa, Y.11
-
255
-
-
68849099370
-
Comparison of Campylobacter fla-SVR genotypes isolated from humans and poultry in three European regions
-
Wassenaar TM, Fernandez-Astorga A, Alonso R, Marteinsson VT, Magnusson SH, Kristoffersen AB and Hofshagen M, 2009. Comparison of Campylobacter fla-SVR genotypes isolated from humans and poultry in three European regions. Lett Appl Microbiol, 49, 388–395.
-
(2009)
Lett Appl Microbiol
, vol.49
, pp. 388-395
-
-
Wassenaar, T.M.1
Fernandez-Astorga, A.2
Alonso, R.3
Marteinsson, V.T.4
Magnusson, S.H.5
Kristoffersen, A.B.6
Hofshagen, M.7
-
256
-
-
0029960212
-
Ribotype diversity of Listeria monocytogenes strains associated with outbreaks of listeriosis in ruminants
-
Wiedmann M, Bruce JL, Knorr R, Bodis M, Cole EM, McDowell CI, McDonough PL and Batt CA, 1996. Ribotype diversity of Listeria monocytogenes strains associated with outbreaks of listeriosis in ruminants. J Clin Microbiol, 34, 1086–1090.
-
(1996)
J Clin Microbiol
, vol.34
, pp. 1086-1090
-
-
Wiedmann, M.1
Bruce, J.L.2
Knorr, R.3
Bodis, M.4
Cole, E.M.5
McDowell, C.I.6
McDonough, P.L.7
Batt, C.A.8
-
257
-
-
52949148195
-
Tracing the source of campylobacteriosis
-
Wilson DJ, Gabriel E, Leatherbarrow AJ, Cheesbrough J, Gee S, Bolton E, Fox A, Fearnhead P, Hart CA and Diggle PJ, 2008. Tracing the source of campylobacteriosis. PLoS Genet, 4, e1000203.
-
(2008)
PLoS Genet
, vol.4
-
-
Wilson, D.J.1
Gabriel, E.2
Leatherbarrow, A.J.3
Cheesbrough, J.4
Gee, S.5
Bolton, E.6
Fox, A.7
Fearnhead, P.8
Hart, C.A.9
Diggle, P.J.10
-
258
-
-
58449131619
-
Rapid evolution and the importance of recombination to the gastroenteric pathogen Campylobacter jejuni
-
Wilson DJ, Gabriel E, Leatherbarrow AJ, Cheesbrough J, Gee S, Bolton E, Fox A, Hart CA, Diggle PJ and Fearnhead P, 2009. Rapid evolution and the importance of recombination to the gastroenteric pathogen Campylobacter jejuni. Mol Biol Evol, 26, 385–397.
-
(2009)
Mol Biol Evol
, vol.26
, pp. 385-397
-
-
Wilson, D.J.1
Gabriel, E.2
Leatherbarrow, A.J.3
Cheesbrough, J.4
Gee, S.5
Bolton, E.6
Fox, A.7
Hart, C.A.8
Diggle, P.J.9
Fearnhead, P.10
-
259
-
-
84867587461
-
Identification of acquired antimicrobial resistance genes
-
Zankari E, Hasman H, Cosentino S, Vestergaard M, Rasmussen S, Lund O, Aarestrup FM and Larsen MV, 2012. Identification of acquired antimicrobial resistance genes. J Antimicrob Chemother, 67, 2640–2644.
-
(2012)
J Antimicrob Chemother
, vol.67
, pp. 2640-2644
-
-
Zankari, E.1
Hasman, H.2
Cosentino, S.3
Vestergaard, M.4
Rasmussen, S.5
Lund, O.6
Aarestrup, F.M.7
Larsen, M.V.8
-
260
-
-
84875265483
-
Genotyping using whole-genome sequencing is a realistic alternative to surveillance based on phenotypic antimicrobial susceptibility testing
-
Zankari E, Hasman H, Kaas RS, Seyfarth AM, Agerso Y, Lund O, Larsen MV and Aarestrup FM, 2013. Genotyping using whole-genome sequencing is a realistic alternative to surveillance based on phenotypic antimicrobial susceptibility testing. J Antimicrob Chemother, 68, 771–777.
-
(2013)
J Antimicrob Chemother
, vol.68
, pp. 771-777
-
-
Zankari, E.1
Hasman, H.2
Kaas, R.S.3
Seyfarth, A.M.4
Agerso, Y.5
Lund, O.6
Larsen, M.V.7
Aarestrup, F.M.8
-
261
-
-
84997796229
-
Whole-Genome Sequences of Four Salmonella enterica erotype Newport Strains from Humans
-
Zhang J, Cao G, Xu X, Jin H, Zhang Q, Chen J, Yang X, Pan H, Zhang X, Allard M, Brown E and Meng J, 2013. Whole-Genome Sequences of Four Salmonella enterica erotype Newport Strains from Humans. Genome Announc, 1 (3).
-
(2013)
Genome Announc
, vol.1
, Issue.3
-
-
Zhang, J.1
Cao, G.2
Xu, X.3
Jin, H.4
Zhang, Q.5
Chen, J.6
Yang, X.7
Pan, H.8
Zhang, X.9
Allard, M.10
Brown, E.11
Meng, J.12
|