메뉴 건너뛰기




Volumn 6, Issue 6, 2008, Pages 431-440

Microbial diversity and the genetic nature of microbial species

Author keywords

[No Author keywords available]

Indexed keywords

ANTIBIOTIC AGENT; METICILLIN; NALIDIXIC ACID; QUINOLINE DERIVED ANTIINFECTIVE AGENT; RIFAMPICIN; RNA 16S;

EID: 43849089834     PISSN: 17401526     EISSN: None     Source Type: Journal    
DOI: 10.1038/nrmicro1872     Document Type: Review
Times cited : (436)

References (88)
  • 1
    • 33744982063 scopus 로고    scopus 로고
    • Pace, N. R. Time for a change. Nature 441, 289 (2006).
    • Pace, N. R. Time for a change. Nature 441, 289 (2006).
  • 2
    • 33846625056 scopus 로고    scopus 로고
    • Recombination and the nature of bacterial speciation
    • Fraser, C., Hanage, W. P. & Spratt, B. G. Recombination and the nature of bacterial speciation. Science 315, 476-480 (2007).
    • (2007) Science , vol.315 , pp. 476-480
    • Fraser, C.1    Hanage, W.P.2    Spratt, B.G.3
  • 3
    • 33845890829 scopus 로고    scopus 로고
    • Genomics and the bacterial species problem
    • Doolittle, W. F & Papke, R. T. Genomics and the bacterial species problem. Genome Biol. 7, 116 (2006).
    • (2006) Genome Biol , vol.7 , pp. 116
    • Doolittle, W.F.1    Papke, R.T.2
  • 5
    • 3042750437 scopus 로고    scopus 로고
    • Sinauer Associates, Sunderland
    • Coyne, J. A. & Orr. H. A. Speciation (Sinauer Associates, Sunderland, 2004).
    • (2004) Speciation
    • Coyne, J.A.1    Orr, H.A.2
  • 6
    • 0029942146 scopus 로고    scopus 로고
    • Polyphasic taxonomy; a consensus approach to bacterial systematics
    • Vandamme, P. et al. Polyphasic taxonomy; a consensus approach to bacterial systematics. Microbiol. Rev. 60, 407-438 (1996).
    • (1996) Microbiol. Rev , vol.60 , pp. 407-438
    • Vandamme, P.1
  • 7
    • 18244371073 scopus 로고    scopus 로고
    • Ernst Mayr and the modern concept of species
    • de Queiroz, K. Ernst Mayr and the modern concept of species. Proc. Natl Acad. Sci. USA 102 (Suppl. 1), 6600-6607 (2005).
    • (2005) Proc. Natl Acad. Sci. USA , vol.102 , Issue.SUPPL. 1 , pp. 6600-6607
    • de Queiroz, K.1
  • 8
    • 33746001405 scopus 로고    scopus 로고
    • On the failure of modern species concepts
    • Hey, J. On the failure of modern species concepts. Trends Ecol. Evol. 21, 447-450 (2006).
    • (2006) Trends Ecol. Evol , vol.21 , pp. 447-450
    • Hey, J.1
  • 9
  • 10
    • 23944437942 scopus 로고    scopus 로고
    • Opinion: Re-evaluating prokaryotic species
    • Gevers, D. et al. Opinion: Re-evaluating prokaryotic species. Nature Rev. Microbiol. 3, 733-739 (2005).
    • (2005) Nature Rev. Microbiol , vol.3 , pp. 733-739
    • Gevers, D.1
  • 11
    • 0035989633 scopus 로고    scopus 로고
    • Report of the ad hoc committee for the re-evaluation of the species definition in bacteriology
    • Stackebrandt, E. et al. Report of the ad hoc committee for the re-evaluation of the species definition in bacteriology. Int. J. Syst. Evol. Microbiol. 52, 1043-1047 (2002).
    • (2002) Int. J. Syst. Evol. Microbiol , vol.52 , pp. 1043-1047
    • Stackebrandt, E.1
  • 14
    • 33845901507 scopus 로고    scopus 로고
    • Microbial ecology: Human gut microbes associated with obesity
    • Ley, R. E., Tumbaugh, P. J., Wein, S. & Gordon, J. I. Microbial ecology: human gut microbes associated with obesity. Nature 444, 1022-1023 (2006).
    • (2006) Nature , vol.444 , pp. 1022-1023
    • Ley, R.E.1    Tumbaugh, P.J.2    Wein, S.3    Gordon, J.I.4
  • 15
    • 33846555715 scopus 로고    scopus 로고
    • DNA-DNA hybridization values and their relationship to whole-genome sequence similarities
    • Goris, J. et al. DNA-DNA hybridization values and their relationship to whole-genome sequence similarities. Int. J. Syst. Evol. Microbiol. 57, 81-91 (2007).
    • (2007) Int. J. Syst. Evol. Microbiol , vol.57 , pp. 81-91
    • Goris, J.1
  • 16
    • 1542377296 scopus 로고    scopus 로고
    • Community structure and metabolism through reconstruction of microbial genomes from the environment
    • Tyson, G. W. et al. Community structure and metabolism through reconstruction of microbial genomes from the environment. Nature 428, 37-43 (2004).
    • (2004) Nature , vol.428 , pp. 37-43
    • Tyson, G.W.1
  • 17
    • 33645741019 scopus 로고    scopus 로고
    • Deciphering the evolution and metabolism of an anammox bacterium from a community genome
    • Strous, M. et al. Deciphering the evolution and metabolism of an anammox bacterium from a community genome. Nature 440, 790-794 (2006).
    • (2006) Nature , vol.440 , pp. 790-794
    • Strous, M.1
  • 18
    • 33845286513 scopus 로고    scopus 로고
    • Genomic analysis of the uncultivated marine crenarchaeote Cenarchaeum symbiosum
    • Hallam. S. J. et al. Genomic analysis of the uncultivated marine crenarchaeote Cenarchaeum symbiosum. Pror Natl Acad. Sci. USA 103, 18296-18301 (2006).
    • (2006) Pror Natl Acad. Sci. USA , vol.103 , pp. 18296-18301
    • Hallam, S.J.1
  • 19
    • 33947238287 scopus 로고    scopus 로고
    • The Sorcerer II global ocean sampling expedition: Northwest Atlantic through eastern tropical Pacific
    • Halpern, A. L. et al. The Sorcerer II global ocean sampling expedition: Northwest Atlantic through eastern tropical Pacific. PLoS Biol. 5, e77 (2007).
    • (2007) PLoS Biol , vol.5
    • Halpern, A.L.1
  • 20
    • 34547540925 scopus 로고    scopus 로고
    • Dissecting biological "dark matter" with single-cell genetic analysis of rare and uncultivated TM7 microbes from the human mouth
    • Marcy Y. et al. Dissecting biological "dark matter" with single-cell genetic analysis of rare and uncultivated TM7 microbes from the human mouth. Pr0c. Natl Acad. Sci. USA 104, 11889-11894 (2007).
    • (2007) Pr0c. Natl Acad. Sci. USA , vol.104 , pp. 11889-11894
    • Marcy, Y.1
  • 21
    • 34548688408 scopus 로고    scopus 로고
    • Insights into the genome of large sulfur bacteria revealed by analysis of single filaments
    • Mussmann, M. et al. Insights into the genome of large sulfur bacteria revealed by analysis of single filaments. PLoS Biol. 5 e230 (2007).
    • (2007) PLoS Biol , vol.5
    • Mussmann, M.1
  • 22
    • 33750953227 scopus 로고    scopus 로고
    • Whole-genome re-sequencing
    • Bentley, D. R. Whole-genome re-sequencing: Curr. Opin. Genet. Dev. 16, 545-552 (2006).
    • (2006) Curr. Opin. Genet. Dev , vol.16 , pp. 545-552
    • Bentley, D.R.1
  • 23
    • 35348887800 scopus 로고    scopus 로고
    • Searching for species in haloarchaea
    • Papke, R. T. et al. Searching for species in haloarchaea. Proc. Natl Acad. Sci. USA. 104, 14092-14097 (2007).
    • (2007) Proc. Natl Acad. Sci. USA , vol.104 , pp. 14092-14097
    • Papke, R.T.1
  • 24
    • 34247884459 scopus 로고    scopus 로고
    • A systematics for discovering the fundamental units of bacterial diversity
    • Cohan, F. M. & Perry, E. B. A systematics for discovering the fundamental units of bacterial diversity. Curr. Biol. 17, R373-R386 (2007).
    • (2007) Curr. Biol , vol.17
    • Cohan, F.M.1    Perry, E.B.2
  • 25
    • 40649125049 scopus 로고    scopus 로고
    • Identifying the fundamental units of bacterial diversity: A paradigm shift to incorporate ecology into bacterial systematics
    • Koeppel, A. et al. Identifying the fundamental units of bacterial diversity: A paradigm shift to incorporate ecology into bacterial systematics. Proc. Natl Acad. Sci. USA 105, 2504-2509 (2008).
    • (2008) Proc. Natl Acad. Sci. USA , vol.105 , pp. 2504-2509
    • Koeppel, A.1
  • 26
    • 27644597469 scopus 로고    scopus 로고
    • Adaptation and incipient sympatric speciation of Bacillus simplex under microclimatic contrast at "Evolution Canyons" I and II, Israel
    • Sikorski, J. & Nevo, E. Adaptation and incipient sympatric speciation of Bacillus simplex under microclimatic contrast at "Evolution Canyons" I and II, Israel. Proc. Natl Acad. Sci. USA 102, 15924-15929 (2005).
    • (2005) Proc. Natl Acad. Sci. USA , vol.102 , pp. 15924-15929
    • Sikorski, J.1    Nevo, E.2
  • 27
    • 33747347595 scopus 로고    scopus 로고
    • Smith. N. H.. Gordon, S. V., Rua-Domenech, R., Clifton-Hadley R. S. & Hewinson, R. G. Bottlenecks and broomsticks: The molecular evolution of Mycobocterium, bovis. Nature Rev. Microbiol. 4, 670-681 (2006).
    • Smith. N. H.. Gordon, S. V., Rua-Domenech, R., Clifton-Hadley R. S. & Hewinson, R. G. Bottlenecks and broomsticks: The molecular evolution of Mycobocterium, bovis. Nature Rev. Microbiol. 4, 670-681 (2006).
  • 28
    • 33751234806 scopus 로고    scopus 로고
    • Patterns and mechanisms of genetic and phenotypic differentiation in marine microbes
    • Polz, M. F., Hunt, D. E., Preheim, S. P. & Weinreich, D. M. Patterns and mechanisms of genetic and phenotypic differentiation in marine microbes. Philos. Trans. R. Soc. Lond. B 361, 2009-2021 (2006).
    • (2006) Philos. Trans. R. Soc. Lond. B , vol.361 , pp. 2009-2021
    • Polz, M.F.1    Hunt, D.E.2    Preheim, S.P.3    Weinreich, D.M.4
  • 29
    • 33645232361 scopus 로고    scopus 로고
    • Genomic islands and the ecology and evolution of Prochlorococcus
    • Coleman, M. L. et al. Genomic islands and the ecology and evolution of Prochlorococcus. Science 311, 1768-1770 (2006).
    • (2006) Science , vol.311 , pp. 1768-1770
    • Coleman, M.L.1
  • 30
    • 33745282930 scopus 로고    scopus 로고
    • Sex and virulence in Excherichia coli: An evolutionary perspective
    • Wirth, T. et al. Sex and virulence in Excherichia coli: An evolutionary perspective. Mol. Microbiol. 60, 1136-1151 (2006).
    • (2006) Mol. Microbiol , vol.60 , pp. 1136-1151
    • Wirth, T.1
  • 31
    • 33746669364 scopus 로고    scopus 로고
    • Molecular interactions between bacterial symbionts and their hosts
    • Dale, C. & Moran, N. A. Molecular interactions between bacterial symbionts and their hosts. Cell 126, 453-465 (2006).
    • (2006) Cell , vol.126 , pp. 453-465
    • Dale, C.1    Moran, N.A.2
  • 32
    • 33751558792 scopus 로고    scopus 로고
    • Evolutionary history of Salmonella Typhi
    • Roumagnac, P. et al. Evolutionary history of Salmonella Typhi. Science 314, 1301-1304 (2006).
    • (2006) Science , vol.314 , pp. 1301-1304
    • Roumagnac, P.1
  • 33
    • 0033598784 scopus 로고    scopus 로고
    • Yersinia pestis, the cause of plague, is a recently emerged done of Versinia pseudotuberculosis
    • Achtman, M. et al. Yersinia pestis, the cause of plague, is a recently emerged done of Versinia pseudotuberculosis. Proc Natl Acad. Sci. USA 96, 14043-14048 (1999).
    • (1999) Proc Natl Acad. Sci. USA , vol.96 , pp. 14043-14048
    • Achtman, M.1
  • 34
    • 19944390941 scopus 로고    scopus 로고
    • Microevolution and history of the plague bacillus, Yersinia pestis
    • Achtman, M. et al. Microevolution and history of the plague bacillus, Yersinia pestis. Proc. Natl Acad. Sci. USA 101, 17837-17842 (2004).
    • (2004) Proc. Natl Acad. Sci. USA , vol.101 , pp. 17837-17842
    • Achtman, M.1
  • 36
    • 0035942267 scopus 로고    scopus 로고
    • Fit genotypes and escape variants of subgroup III Neisseria meningitis during three pandemics of epidemic meningitis
    • Zhu, P. et al. Fit genotypes and escape variants of subgroup III Neisseria meningitis during three pandemics of epidemic meningitis. Proc. Natl Acad. Sci. USA 98, 5234-5239 (2001).
    • (2001) Proc. Natl Acad. Sci. USA , vol.98 , pp. 5234-5239
    • Zhu, P.1
  • 37
    • 0022544449 scopus 로고
    • Methods of multilocus enzyme electrophoresis for bacterial population genetics and systematics
    • Selander R. K. et al. Methods of multilocus enzyme electrophoresis for bacterial population genetics and systematics. Appl. Environ. Microbiol. 51, 873-884 (1906).
    • (1906) Appl. Environ. Microbiol , vol.51 , pp. 873-884
    • Selander, R.K.1
  • 38
    • 33750290454 scopus 로고    scopus 로고
    • Multilocus, sequence typing of bacteria
    • Maiden, M. C. Multilocus, sequence typing of bacteria. Annu. Rev. Microbiol. 60, 561-588 (2006).
    • (2006) Annu. Rev. Microbiol , vol.60 , pp. 561-588
    • Maiden, M.C.1
  • 39
    • 2942679276 scopus 로고    scopus 로고
    • Feil, E. J. Small change: Keeping pace with microevolution. Nature Rev. Microbiol. 2, 483-495 (2004).
    • Feil, E. J. Small change: Keeping pace with microevolution. Nature Rev. Microbiol. 2, 483-495 (2004).
  • 41
    • 34548406920 scopus 로고    scopus 로고
    • High intraspecific recombination rate in a native population of Candidatus Pelagibacter ubique (SAR11)
    • Vergin, K. L. et al. High intraspecific recombination rate in a native population of Candidatus Pelagibacter ubique (SAR11). Environ. Microbiol. 9, 2430-2440 (2007).
    • (2007) Environ. Microbiol , vol.9 , pp. 2430-2440
    • Vergin, K.L.1
  • 42
    • 14344252773 scopus 로고    scopus 로고
    • Frequent genetic recombination in natural populations of the marine cyanobacterium Microcoleus chthonoplastes
    • Lodders, N., Stackebrandt, E. & Nübel, U. Frequent genetic recombination in natural populations of the marine cyanobacterium Microcoleus chthonoplastes. Environ. Microbiol. 7, 434-442 (2005).
    • (2005) Environ. Microbiol , vol.7 , pp. 434-442
    • Lodders, N.1    Stackebrandt, E.2    Nübel, U.3
  • 43
    • 33751226606 scopus 로고    scopus 로고
    • Allopatric origins of microbial species
    • Whitaker, R. J. Allopatric origins of microbial species. Philos. Trans. R. Soc. Lond. B 361, 1975-1984 (2006).
    • (2006) Philos. Trans. R. Soc. Lond. B , vol.361 , pp. 1975-1984
    • Whitaker, R.J.1
  • 44
    • 33846923050 scopus 로고    scopus 로고
    • Genome dynamics in a natural archaeal population
    • Allen, E. E. et al. Genome dynamics in a natural archaeal population. Proc. Natl Acad. Sci. USA 104, 1883-1888 (2007).
    • (2007) Proc. Natl Acad. Sci. USA , vol.104 , pp. 1883-1888
    • Allen, E.E.1
  • 45
    • 33847201150 scopus 로고    scopus 로고
    • An African origin for the intimate association between humans and Helicobacter pylori
    • Bacterial biogeography as a mirror of ancient human migrations
    • Linz, B. et al. An African origin for the intimate association between humans and Helicobacter pylori. Nature 445, 915-918 (2007). Bacterial biogeography as a mirror of ancient human migrations.
    • (2007) Nature , vol.445 , pp. 915-918
    • Linz, B.1
  • 46
    • 0035909914 scopus 로고    scopus 로고
    • Recombination and mutation during long-term gastric colonization by Helicobacter pylori: Estimates of clock rates, recombination size and minimal age
    • Falush, D. et al. Recombination and mutation during long-term gastric colonization by Helicobacter pylori: Estimates of clock rates, recombination size and minimal age. Proc. Natl Acad. Sci. USA 98, 15056-15061 (2001).
    • (2001) Proc. Natl Acad. Sci. USA , vol.98 , pp. 15056-15061
    • Falush, D.1
  • 47
    • 33751207098 scopus 로고    scopus 로고
    • Mismatch induced speciation in Salmonella: Model and data
    • Falush, D. et al. Mismatch induced speciation in Salmonella: model and data. Philos. Trans. R. Soc. Lond. B 361, 2045-2053 (2006).
    • (2006) Philos. Trans. R. Soc. Lond. B , vol.361 , pp. 2045-2053
    • Falush, D.1
  • 48
    • 35048898799 scopus 로고    scopus 로고
    • Genetic exchange across a species boundary in the archaeal genus Ferroplasma
    • Eppley, J. M., Tyson, G. W., Getz, W. M. & Banfield, J. F. Genetic exchange across a species boundary in the archaeal genus Ferroplasma. Genetics 177, 407-416 (2007).
    • (2007) Genetics , vol.177 , pp. 407-416
    • Eppley, J.M.1    Tyson, G.W.2    Getz, W.M.3    Banfield, J.F.4
  • 49
    • 0036407157 scopus 로고    scopus 로고
    • What are bacterial species?
    • Cohan, F. M. What are bacterial species? Annu. Rev. Microbiol. 56, 457-487 (2002).
    • (2002) Annu. Rev. Microbiol , vol.56 , pp. 457-487
    • Cohan, F.M.1
  • 50
    • 22144486947 scopus 로고    scopus 로고
    • Fuzzy species among recombinogenic bacteria
    • Hanage, W. P., Fraser, C. & Spratt, B. G. Fuzzy species among recombinogenic bacteria. BMC Biol. 3, 6 (2005)
    • (2005) BMC Biol , vol.3 , pp. 6
    • Hanage, W.P.1    Fraser, C.2    Spratt, B.G.3
  • 51
    • 33751256288 scopus 로고    scopus 로고
    • Hanage, W. P., Fraser, C. & Spratt, B. G. Sequences, sequence clusters and bacterial species. Philos. Trans. R. Soc. Lond. B 361, 1917-1927 (2006). One of a number of articles from a special symposium that are cited here and that illustrate various aspects of diversity within microbial species. The whole symposium is highly recommended as background material.
    • Hanage, W. P., Fraser, C. & Spratt, B. G. Sequences, sequence clusters and bacterial species. Philos. Trans. R. Soc. Lond. B 361, 1917-1927 (2006). One of a number of articles from a special symposium that are cited here and that illustrate various aspects of diversity within microbial species. The whole symposium is highly recommended as background material.
  • 52
    • 33746612926 scopus 로고    scopus 로고
    • Who ate whom? Adaptive Helicobacter genomic changes that accompanied a host jump from early humans to large felines
    • Eppinger, M. et al. Who ate whom? Adaptive Helicobacter genomic changes that accompanied a host jump from early humans to large felines. PLoS Genet. 2, e120 (2006).
    • (2006) PLoS Genet , vol.2
    • Eppinger, M.1
  • 53
    • 34748915252 scopus 로고    scopus 로고
    • Molecular epidemiology, evolution, and ecology of Francisella
    • Keim, P., Johansson, A. & Wagner, D. M. Molecular epidemiology, evolution, and ecology of Francisella. Ann. NY Acad. Sci. 1105 30-66 (2007).
    • (2007) Ann. NY Acad. Sci , vol.1105 , pp. 30-66
    • Keim, P.1    Johansson, A.2    Wagner, D.M.3
  • 54
    • 34548246020 scopus 로고    scopus 로고
    • Temporal fragmentation of speciation in bacteria
    • Retchless, A. C. & Lawrence, J. G. Temporal fragmentation of speciation in bacteria. Science 317, 1093-1096 (2007).
    • (2007) Science , vol.317 , pp. 1093-1096
    • Retchless, A.C.1    Lawrence, J.G.2
  • 55
    • 0037423837 scopus 로고    scopus 로고
    • Traces of human migrations in Helicobacter pylori populations
    • Falush, D. et al. Traces of human migrations in Helicobacter pylori populations. Science 299, 1582-1585 (2003).
    • (2003) Science , vol.299 , pp. 1582-1585
    • Falush, D.1
  • 56
    • 33748206790 scopus 로고    scopus 로고
    • Emergence and resurgence of meticillin-resistant Staphylococcus aureus as a public-health threat
    • Grundmann, H., Aires-de-Sousa, M., Boyce, J. & Tiemersma, E. Emergence and resurgence of meticillin-resistant Staphylococcus aureus as a public-health threat. Lancet 368, 874-885 (2006).
    • (2006) Lancet , vol.368 , pp. 874-885
    • Grundmann, H.1    Aires-de-Sousa, M.2    Boyce, J.3    Tiemersma, E.4
  • 57
    • 0037168538 scopus 로고    scopus 로고
    • Extensive mosaic structure revealed by the complete genome sequence of uropathogenic Escherichia coli
    • Welch, R. A. et al. Extensive mosaic structure revealed by the complete genome sequence of uropathogenic Escherichia coli. Proc. Natl Acad. Sci. USA 99, 17020-17024 (2002).
    • (2002) Proc. Natl Acad. Sci. USA , vol.99 , pp. 17020-17024
    • Welch, R.A.1
  • 58
    • 34247601641 scopus 로고    scopus 로고
    • Defining genomic islands and uropathogen-specific genes in uropathogenic Escherichia coli
    • Lloyd, A. L., Rasko, D. A. & Mobley, H. L. Defining genomic islands and uropathogen-specific genes in uropathogenic Escherichia coli. J. Bacteriol. 189, 3532-3546 (2007).
    • (2007) J. Bacteriol , vol.189 , pp. 3532-3546
    • Lloyd, A.L.1    Rasko, D.A.2    Mobley, H.L.3
  • 59
    • 0034980876 scopus 로고    scopus 로고
    • Ecological fitness, genomic islands and bacterial pathogenicity. A Darwinian view of the evolution of microbes
    • 376-381
    • Hacker, J. & Carniel, E. Ecological fitness, genomic islands and bacterial pathogenicity. A Darwinian view of the evolution of microbes. EMBO Rep. 2, 376-381 (2001).
    • (2001) EMBO Rep , vol.2
    • Hacker, J.1    Carniel, E.2
  • 60
    • 33749565756 scopus 로고    scopus 로고
    • Pathogenicity islands: A molecular toolbox for bacterial virulence
    • Gal-Mor, O. & Finlay B. B. Pathogenicity islands: A molecular toolbox for bacterial virulence. Cell. Microbiol. 8, 1707-1719 (2006).
    • (2006) Cell. Microbiol , vol.8 , pp. 1707-1719
    • Gal-Mor, O.1    Finlay, B.B.2
  • 61
    • 26444599659 scopus 로고    scopus 로고
    • Clustered genes related to sulfate respiration in uncultured prokaryotes support the theory of their concomitant horizontal transfer
    • Mussmann, M. et al. Clustered genes related to sulfate respiration in uncultured prokaryotes support the theory of their concomitant horizontal transfer. J. Bacteriol. 187, 7126-7137 (2005).
    • (2005) J. Bacteriol , vol.187 , pp. 7126-7137
    • Mussmann, M.1
  • 62
    • 25444524604 scopus 로고    scopus 로고
    • Genome analysis of multiple pathogenic isolates of Streptococcus agalactiae: Implications for the microbial "pan-genome
    • Tettelin, H. et al. Genome analysis of multiple pathogenic isolates of Streptococcus agalactiae: Implications for the microbial "pan-genome". Proc. Natl Acad. Sci. USA 102, 13950-13955 (2005).
    • (2005) Proc. Natl Acad. Sci. USA , vol.102 , pp. 13950-13955
    • Tettelin, H.1
  • 63
    • 21844434913 scopus 로고    scopus 로고
    • Evolutionary origins of genomic repertoires in bacteria
    • Lerat, E., Daubin, V., Ochman, H. & Moran, N. A. Evolutionary origins of genomic repertoires in bacteria. PLoS Biol. 3, e130 (2005).
    • (2005) PLoS Biol , vol.3
    • Lerat, E.1    Daubin, V.2    Ochman, H.3    Moran, N.A.4
  • 64
    • 33846476262 scopus 로고    scopus 로고
    • Ancestral eenome sizes specify the minimum rate of lateral gene transfer during prokaryote evolution
    • Dagan, T & Martin, W. Ancestral eenome sizes specify the minimum rate of lateral gene transfer during prokaryote evolution. Proc. Natl Acad. Sd. USA 104, 870-875 (2007).
    • (2007) Proc. Natl Acad. Sd. USA , vol.104 , pp. 870-875
    • Dagan, T.1    Martin, W.2
  • 65
    • 34249276425 scopus 로고    scopus 로고
    • Gressmann, H. et al. Gain and loss of multiple genes during the evolution of Helicobacter pylori. PLoS Genet. 1, e43 (2005).
    • Gressmann, H. et al. Gain and loss of multiple genes during the evolution of Helicobacter pylori. PLoS Genet. 1, e43 (2005).
  • 66
    • 0029852315 scopus 로고    scopus 로고
    • Distribution of pathogenicity islands in Salmonella spp
    • Ochman, H. & Groisman, E. A. Distribution of pathogenicity islands in Salmonella spp. Infect. Immun. 64, 5410-5412 (1996).
    • (1996) Infect. Immun , vol.64 , pp. 5410-5412
    • Ochman, H.1    Groisman, E.A.2
  • 67
    • 33748689309 scopus 로고    scopus 로고
    • Interpolated variable order motifs for identification of horizontally acquired DNA: Revisiting the Salmonella pathogenicity islands
    • Vernikos, G. S. & Parkhill, J. Interpolated variable order motifs for identification of horizontally acquired DNA: Revisiting the Salmonella pathogenicity islands. Bioinformatics 22, 2196-2203 (2006).
    • (2006) Bioinformatics , vol.22 , pp. 2196-2203
    • Vernikos, G.S.1    Parkhill, J.2
  • 68
    • 34547553697 scopus 로고    scopus 로고
    • Simultaneous amino acid substitutions at antigenic sites drive influenza A hemagglutinin evolution
    • Shih, A. C., Hsiao, T. C., Ho, M. S. & Li. W. H. Simultaneous amino acid substitutions at antigenic sites drive influenza A hemagglutinin evolution. Proc. Natl Acad. Sci. USA 104, 6283-6288 (2007).
    • (2007) Proc. Natl Acad. Sci. USA , vol.104 , pp. 6283-6288
    • Shih, A.C.1    Hsiao, T.C.2    Ho, M.S.3    Li, W.H.4
  • 69
    • 33745615117 scopus 로고    scopus 로고
    • The competitive cost of antibiotic resistance in Mycobacterium tuberculosis
    • Gagneux, S. et al. The competitive cost of antibiotic resistance in Mycobacterium tuberculosis. Science 312, 1944-1946 (2006).
    • (2006) Science , vol.312 , pp. 1944-1946
    • Gagneux, S.1
  • 70
    • 34447283332 scopus 로고    scopus 로고
    • Differential stability and trade-off effects of pathoadaptive mutations in the Eschenchia coli FimH adhesin
    • Weissman, S. J. et al. Differential stability and trade-off effects of pathoadaptive mutations in the Eschenchia coli FimH adhesin. Infect. Immun. 75, 3548-3555 (2007).
    • (2007) Infect. Immun , vol.75 , pp. 3548-3555
    • Weissman, S.J.1
  • 71
    • 33744814106 scopus 로고    scopus 로고
    • Genetic adaptation by Pseudamonas aeruginosa to the airways of cystic fibrosis patients
    • Smith, E. E. et al. Genetic adaptation by Pseudamonas aeruginosa to the airways of cystic fibrosis patients. Proc Natl Acad. Sci. USA 103, 8487-8492 (2006).
    • (2006) Proc Natl Acad. Sci. USA , vol.103 , pp. 8487-8492
    • Smith, E.E.1
  • 72
    • 8644224924 scopus 로고    scopus 로고
    • Genomic changes following host restriction in bacteria
    • Moran, N. A. & Plague, G. R. Genomic changes following host restriction in bacteria. Curr. Opin. Genet. Dev. 14, 627-633 (2004).
    • (2004) Curr. Opin. Genet. Dev , vol.14 , pp. 627-633
    • Moran, N.A.1    Plague, G.R.2
  • 73
    • 35348961403 scopus 로고    scopus 로고
    • An ecological and evolutionary perspective on human-microbe mutualism and disease
    • Dethlefsen, L, McFall-Ngai, M. & Relman D. A. An ecological and evolutionary perspective on human-microbe mutualism and disease. Nature 449, 811-818 (2007).
    • (2007) Nature , vol.449 , pp. 811-818
    • Dethlefsen, L.1    McFall-Ngai, M.2    Relman, D.A.3
  • 75
    • 35148888609 scopus 로고    scopus 로고
    • Microbial population structure in the deep marine biosphere
    • Huber, J. A. et al. Microbial population structure in the deep marine biosphere. Science 318, 97-100 (2007).
    • (2007) Science , vol.318 , pp. 97-100
    • Huber, J.A.1
  • 76
    • 33645216333 scopus 로고    scopus 로고
    • Niche partitioning among Prochlorococcus ecotypes along ocean-scale environmental gradients
    • Johnson, Z. I. et al. Niche partitioning among Prochlorococcus ecotypes along ocean-scale environmental gradients. Science 311, 1737-1740 (2006).
    • (2006) Science , vol.311 , pp. 1737-1740
    • Johnson, Z.I.1
  • 77
    • 14544287770 scopus 로고    scopus 로고
    • Genotypic diversity within a natural coastal bacterioplankton population
    • Thompson, J. R. et al. Genotypic diversity within a natural coastal bacterioplankton population. Science 307, 1311-1313 (2005).
    • (2005) Science , vol.307 , pp. 1311-1313
    • Thompson, J.R.1
  • 78
    • 38849200974 scopus 로고    scopus 로고
    • Natural variation in SAR11 marine bacterioplankton genomes inferred from metagenomic data
    • Wilhelm, L. J., Tripp, H. J., Givan, S. A., Smith, D. P. & Giovannoni, S. J. Natural variation in SAR11 marine bacterioplankton genomes inferred from metagenomic data. Biol. Direct 2, 27 (2007).
    • (2007) Biol. Direct , vol.2 , pp. 27
    • Wilhelm, L.J.1    Tripp, H.J.2    Givan, S.A.3    Smith, D.P.4    Giovannoni, S.J.5
  • 79
    • 0000770675 scopus 로고
    • Report of the ad hoc committee on reconciliation of approaches to bacterial systematics
    • Wayne, L. G. et al. Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int. J. Syst. Bacteriol. 37, 463-464 (1987).
    • (1987) Int. J. Syst. Bacteriol , vol.37 , pp. 463-464
    • Wayne, L.G.1
  • 80
    • 33947302827 scopus 로고    scopus 로고
    • Taxonomic parameters revisited: Tarnished gold standards
    • Stackebrandt, E. & Ebers, J. Taxonomic parameters revisited: Tarnished gold standards. Microbiol. Today 33, 152-155 (2006).
    • (2006) Microbiol. Today , vol.33 , pp. 152-155
    • Stackebrandt, E.1    Ebers, J.2
  • 81
    • 0028887837 scopus 로고
    • Taxonomic note: Implementation of the provisional status Candidatus for incompletely described procaryotes
    • Murray, R. G. & Stackebrandt, E. Taxonomic note: Implementation of the provisional status Candidatus for incompletely described procaryotes. Int. J. Syst. Bacteriol. 45, 186-187 (1995).
    • (1995) Int. J. Syst. Bacteriol , vol.45 , pp. 186-187
    • Murray, R.G.1    Stackebrandt, E.2
  • 82
    • 33751258603 scopus 로고    scopus 로고
    • The bacterial species dilemma and the genomic-phylogenetic species concept
    • Staley, J. T. The bacterial species dilemma and the genomic-phylogenetic species concept. Philos. Trans. R. Soc. Lond. B 361, 1899-1909 (2006).
    • (2006) Philos. Trans. R. Soc. Lond. B , vol.361 , pp. 1899-1909
    • Staley, J.T.1
  • 84
    • 33644749286 scopus 로고    scopus 로고
    • Recombination in Thermotoga: Implications for species concepts and biogeography
    • Nesbø, C. L., Dlutek, M. & Doolittle, W. F. Recombination in Thermotoga: Implications for species concepts and biogeography. Genetics 172, 759-769 (2006).
    • (2006) Genetics , vol.172 , pp. 759-769
    • Nesbø, C.L.1    Dlutek, M.2    Doolittle, W.F.3
  • 85
    • 13144252236 scopus 로고    scopus 로고
    • Maiden, M. C. J. et al. Multilocus sequence typing: A portable approach to the identification of clones within populations of pathogenic microorganisms. Proc. Natl Acad. Sci. USA 95, 3140-3145 (1998). The first publication to describe the MLST concept
    • Maiden, M. C. J. et al. Multilocus sequence typing: A portable approach to the identification of clones within populations of pathogenic microorganisms. Proc. Natl Acad. Sci. USA 95, 3140-3145 (1998). The first publication to describe the MLST concept
  • 86
    • 0031912606 scopus 로고    scopus 로고
    • Novel division level bacterial diversity in a Yellowstone hot spring
    • Hugenholtz, P., Pitulle, C., Hershberger, K. L. & Pace, N. R. Novel division level bacterial diversity in a Yellowstone hot spring. J. Bacteriol. 180, 366-376 (1998).
    • (1998) J. Bacteriol , vol.180 , pp. 366-376
    • Hugenholtz, P.1    Pitulle, C.2    Hershberger, K.L.3    Pace, N.R.4
  • 87
    • 33644520519 scopus 로고    scopus 로고
    • The Genomes On Line Database (GOLD) v.2: A monitor of genome projects worldwide
    • Liolios, K., Tavernarakis, N., Hugenholtz, P. & Kyrpides, N. C. The Genomes On Line Database (GOLD) v.2: A monitor of genome projects worldwide. Nucleic Acids Res. 34, D332-D334 (2006).
    • (2006) Nucleic Acids Res , vol.34
    • Liolios, K.1    Tavernarakis, N.2    Hugenholtz, P.3    Kyrpides, N.C.4
  • 88
    • 29144529542 scopus 로고    scopus 로고
    • Ribosomal gene milestone met, already left in dust. ASM News 71 6-7 (2005).
    • Ribosomal gene milestone met, already left in dust. ASM News 71 6-7 (2005).


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.