Genotyping using whole-genome sequencing is a realistic alternative to surveillance based on phenotypic antimicrobial susceptibility testing

Journal of Antimicrobial Chemotherapy

Volumn 68, Issue 4, 2013, Pages 771-777

  Zankari, Ea ^a   Hasman, Henrik ^a   Kaas, Rolf Sommer ^a   Seyfarth, Anne Mette ^a   Agersø, Yvonne ^a   Lund, Ole ^a   Larsen, Mette Voldby ^a   Aarestrup, Frank M ^a  

^a TECHNICAL UNIVERSITY OF DENMARK   (Denmark)

Author keywords

Enterococcus; Escherichia coli; Genomic; MLST; Resistance genes; Salmonella

Indexed keywords

AMOXICILLIN PLUS CLAVULANIC ACID; AMPICILLIN; APRAMYCIN; CEFOTAXIME; CEFTIOFUR; CHLORAMPHENICOL; CIPROFLOXACIN; COLISTIN; ERYTHROMYCIN; FLORFENICOL; GENOMIC DNA; GENTAMICIN; KANAMYCIN; LINEZOLID; NALIDIXIC ACID; NEOMYCIN; PENICILLIN DERIVATIVE; SALINOMYCIN; SPECTINOMYCIN; STREPTOMYCIN; SULFAMETHOXAZOLE; TEICOPLANIN; TETRACYCLINE; TIGECYCLINE; TRIMETHOPRIM; VANCOMYCIN;

ANIMAL EXPERIMENT; ANTIBIOTIC RESISTANCE; ARTICLE; BACTERIAL GENETICS; CONTROLLED STUDY; DNA SEQUENCE; ENTEROCOCCUS FAECALIS; ENTEROCOCCUS FAECIUM; ESCHERICHIA COLI; EXPERIMENTAL PIG; GENE SEQUENCE; GENETIC ASSOCIATION; GENETIC RESISTANCE; NONHUMAN; NUCLEOTIDE SEQUENCE; PHENOTYPE; SALMONELLA TYPHIMURIUM;

ANIMALS; COMPUTATIONAL BIOLOGY; ESCHERICHIA COLI; GENOME, BACTERIAL; GENOTYPE; MICROBIAL SENSITIVITY TESTS; MULTILOCUS SEQUENCE TYPING; SALMONELLA TYPHIMURIUM; SEQUENCE ANALYSIS, DNA; SWINE;

EID: 84875265483     PISSN: 03057453     EISSN: 14602091     Source Type: Journal    
DOI: 10.1093/jac/dks496     Document Type: Article

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