-
1
-
-
2142662206
-
FoodNet estimate of the burden of illness caused by nontyphoidal Salmonella infections in the United States
-
Dis
-
Voetsch AC, Van Gilder TJ, Angulo FJ, Farley MM, Shallow S, et al. (2004) FoodNet estimate of the burden of illness caused by nontyphoidal Salmonella infections in the United States. Clin Infect Dis (Suppl 3): S127-134.
-
(2004)
Clin Infect
, Issue.SUPPL. 3
-
-
Voetsch, A.C.1
Van Gilder, T.J.2
Angulo, F.J.3
Farley, M.M.4
Shallow, S.5
-
2
-
-
35348839697
-
Multiplex, bead-based suspension array for molecular determination of common Salmonella serogroups
-
Fitzgerald C, Collins M, van Duyne S, Mikoleit M, Brown T, et al. (2007) Multiplex, bead-based suspension array for molecular determination of common Salmonella serogroups. J Clin Microbiol 45: 3323-3334.
-
(2007)
J Clin Microbiol
, vol.45
, pp. 3323-3334
-
-
Fitzgerald, C.1
Collins, M.2
van Duyne, S.3
Mikoleit, M.4
Brown, T.5
-
3
-
-
33644527178
-
International trends in Salmonella serotypes 1998-2003-a surveillance report from the Enter-net international surveillance network
-
Enter-net participants
-
Fisher IS, Enter-net participants, (2004) International trends in Salmonella serotypes 1998-2003-a surveillance report from the Enter-net international surveillance network. Euro Surveill 9: 45-47.
-
(2004)
Euro Surveill
, vol.9
, pp. 45-47
-
-
Fisher, I.S.1
-
4
-
-
57449095929
-
-
9th ed. Paris, France: WHO Collaborating Center for Reference and Research on Salmonella, Institut Pasteur website, Available:. Accessed 2012 Apr
-
Grimont PAD, Weill FX, (2007) Antigenic formulae of the Salmonella serovars. 9th ed. Paris, France: WHO Collaborating Center for Reference and Research on Salmonella, Institut Pasteur website. 23 Available:http://www.pasteur.fr/ip/portal/action/WebdriveActionEvent/oid/01s-000036-089. Accessed 2012 Apr.
-
(2007)
Antigenic formulae of the Salmonella serovars
, vol.23
-
-
Grimont, P.A.D.1
Weill, F.X.2
-
5
-
-
0035905885
-
Use of molecular subtyping in surveillance for Salmonella enterica serotype Typhimurium
-
Bender JB, Hedberg CW, Boxrud DJ, Besser JM, Wicklund JH, et al. (2001) Use of molecular subtyping in surveillance for Salmonella enterica serotype Typhimurium. N Engl J Med 344: 189-195.
-
(2001)
N Engl J Med
, vol.344
, pp. 189-195
-
-
Bender, J.B.1
Hedberg, C.W.2
Boxrud, D.J.3
Besser, J.M.4
Wicklund, J.H.5
-
6
-
-
0017614807
-
Bacteriophage-typing designations of Salmonella typhimurium
-
Anderson ES, Ward LR, Saxe MJ, de Sa JD, (1977) Bacteriophage-typing designations of Salmonella typhimurium. J Hyg 78: 297-300.
-
(1977)
J Hyg
, vol.78
, pp. 297-300
-
-
Anderson, E.S.1
Ward, L.R.2
Saxe, M.J.3
de Sa, J.D.4
-
7
-
-
0028107286
-
Clonal lines of Salmonella enterica serotype Enteritidis documented by IS200-, ribo-, pulsed-field gel electrophoresis and RFLP typing
-
Olsen JE, Skov MN, Threlfall EJ, Brown DJ, (1994) Clonal lines of Salmonella enterica serotype Enteritidis documented by IS200-, ribo-, pulsed-field gel electrophoresis and RFLP typing. J Med Microbiol 40: 15-22.
-
(1994)
J Med Microbiol
, vol.40
, pp. 15-22
-
-
Olsen, J.E.1
Skov, M.N.2
Threlfall, E.J.3
Brown, D.J.4
-
8
-
-
38949204538
-
Timeliness of enteric disease surveillance in 6 US states
-
Hedberg CW, Greenblatt JF, Matyas BT, Lemmings J, Sharp DJ, et al. (2008) Timeliness of enteric disease surveillance in 6 US states. Emerg Infect Dis 14: 311-313.
-
(2008)
Emerg Infect Dis
, vol.14
, pp. 311-313
-
-
Hedberg, C.W.1
Greenblatt, J.F.2
Matyas, B.T.3
Lemmings, J.4
Sharp, D.J.5
-
9
-
-
0037387157
-
DNA fingerprinting of Salmonella enterica subsp. enterica serovar Typhimurium with emphasis on phage type DT104 based on variable number of tandem repeat loci
-
Lindstedt BA, Heir E, Gjernes E, Kapperud G, (2003) DNA fingerprinting of Salmonella enterica subsp. enterica serovar Typhimurium with emphasis on phage type DT104 based on variable number of tandem repeat loci. J Clin Microbiol 41: 1469-1479.
-
(2003)
J Clin Microbiol
, vol.41
, pp. 1469-1479
-
-
Lindstedt, B.A.1
Heir, E.2
Gjernes, E.3
Kapperud, G.4
-
10
-
-
34548246397
-
Guidelines for the validation and application of typing methods for use in bacterial epidemiology
-
Infect
-
van Belkum A, Tassios PT, Dijkshoorn L, Haeggman S, Cookson B, et al. (2007) Guidelines for the validation and application of typing methods for use in bacterial epidemiology. Clin Microbiol Infect (Suppl 3): 1-46.
-
(2007)
Clin Microbiol
, Issue.SUPPL. 3
, pp. 1-46
-
-
van Belkum, A.1
Tassios, P.T.2
Dijkshoorn, L.3
Haeggman, S.4
Cookson, B.5
-
11
-
-
33847395073
-
Tandem repeat analysis for surveillance of human Salmonella Typhimurium infections
-
Torpdahl M, Sørensen G, Lindstedt BA, Nielsen EM, (2007) Tandem repeat analysis for surveillance of human Salmonella Typhimurium infections. Emerg Infect Dis 13: 388-395.
-
(2007)
Emerg Infect Dis
, vol.13
, pp. 388-395
-
-
Torpdahl, M.1
Sørensen, G.2
Lindstedt, B.A.3
Nielsen, E.M.4
-
12
-
-
34548704268
-
Stability of multiple-locus variable-number tandem repeats in Salmonella enterica serovar Typhimurium
-
Hopkins KL, Maguire C, Best E, Liebana E, Threlfall EJ, (2007) Stability of multiple-locus variable-number tandem repeats in Salmonella enterica serovar Typhimurium. J Clin Microbiol 45: 3058-3061.
-
(2007)
J Clin Microbiol
, vol.45
, pp. 3058-3061
-
-
Hopkins, K.L.1
Maguire, C.2
Best, E.3
Liebana, E.4
Threlfall, E.J.5
-
13
-
-
80052054109
-
Standardisation of multilocus variable-number tandem-repeat analysis (MLVA) for subtyping of Salmonella enterica serovar Enteritidis
-
Euro Surveill 16, pii
-
Hopkins KL, Peters TM, de Pinna E, Wain J, (2011) Standardisation of multilocus variable-number tandem-repeat analysis (MLVA) for subtyping of Salmonella enterica serovar Enteritidis. Euro Surveill 16 pii.
-
(2011)
-
-
Hopkins, K.L.1
Peters, T.M.2
de Pinna, E.3
Wain, J.4
-
14
-
-
0036267740
-
Identification of genes that are associated with DNA repeats in prokaryotes
-
Jansen R, Embden JD, Gaastra W, Schouls LM, (2002) Identification of genes that are associated with DNA repeats in prokaryotes. Mol Microbiol 43: 1565-1575.
-
(2002)
Mol Microbiol
, vol.43
, pp. 1565-1575
-
-
Jansen, R.1
Embden, J.D.2
Gaastra, W.3
Schouls, L.M.4
-
15
-
-
34250662138
-
The CRISPRdb database and tools to display CRISPRs and to generate dictionaries of spacers and repeats
-
Grissa I, Vergnaud G, Pourcel C, (2007) The CRISPRdb database and tools to display CRISPRs and to generate dictionaries of spacers and repeats. BMC Bioinformatics 8: 172.
-
(2007)
BMC Bioinformatics
, vol.8
, pp. 172
-
-
Grissa, I.1
Vergnaud, G.2
Pourcel, C.3
-
16
-
-
74249095519
-
CRISPR/Cas, the immune system of bacteria and archaea
-
Horvath P, Barrangou R, (2010) CRISPR/Cas, the immune system of bacteria and archaea. Science 327: 167-170.
-
(2010)
Science
, vol.327
, pp. 167-170
-
-
Horvath, P.1
Barrangou, R.2
-
17
-
-
0030911908
-
Simultaneous detection and strain differentiation of Mycobacterium tuberculosis for diagnosis and epidemiology
-
Kamerbeek J, Schouls L, Kolk A, van Agterveld M, van Soolingen D, et al. (1997) Simultaneous detection and strain differentiation of Mycobacterium tuberculosis for diagnosis and epidemiology. J Clin Microbiol 35: 907-914.
-
(1997)
J Clin Microbiol
, vol.35
, pp. 907-914
-
-
Kamerbeek, J.1
Schouls, L.2
Kolk, A.3
van Agterveld, M.4
van Soolingen, D.5
-
18
-
-
15844390228
-
CRISPR elements in Yersinia pestis acquire new repeats by preferential uptake of bacteriophage DNA, and provide additional tools for evolutionary studies
-
Pourcel C, Salvignol G, Vergnaud G, (2005) CRISPR elements in Yersinia pestis acquire new repeats by preferential uptake of bacteriophage DNA, and provide additional tools for evolutionary studies. Microbiology 151: 653-663.
-
(2005)
Microbiology
, vol.151
, pp. 653-663
-
-
Pourcel, C.1
Salvignol, G.2
Vergnaud, G.3
-
19
-
-
34547405296
-
Corynebacterium diphtheriae spoligotyping based on combined use of two CRISPR loci
-
Mokrousov I, Limeschenko E, Vyazovaya A, Narvskaya O, (2007) Corynebacterium diphtheriae spoligotyping based on combined use of two CRISPR loci. Biotechnol J 2: 901-906.
-
(2007)
Biotechnol J
, vol.2
, pp. 901-906
-
-
Mokrousov, I.1
Limeschenko, E.2
Vyazovaya, A.3
Narvskaya, O.4
-
20
-
-
0037236212
-
Comparative genotyping of Campylobacter jejuni by amplified fragment length polymorphism, multilocus sequence typing, and short repeat sequencing: strain diversity, host range, and recombination
-
Schouls LM, Reulen S, Duim B, Wagenaar JA, Willems RJ, et al. (2003) Comparative genotyping of Campylobacter jejuni by amplified fragment length polymorphism, multilocus sequence typing, and short repeat sequencing: strain diversity, host range, and recombination. J Clin Microbiol 41: 15-26.
-
(2003)
J Clin Microbiol
, vol.41
, pp. 15-26
-
-
Schouls, L.M.1
Reulen, S.2
Duim, B.3
Wagenaar, J.A.4
Willems, R.J.5
-
21
-
-
34047118522
-
CRISPR provides acquired resistance against viruses in prokaryotes
-
Barrangou R, Fremaux C, Deveau H, Richards M, Boyaval P, et al. (2007) CRISPR provides acquired resistance against viruses in prokaryotes. Science 315: 1709-1712.
-
(2007)
Science
, vol.315
, pp. 1709-1712
-
-
Barrangou, R.1
Fremaux, C.2
Deveau, H.3
Richards, M.4
Boyaval, P.5
-
22
-
-
78149261827
-
The CRISPR/Cas bacterial immune system cleaves bacteriophage and plasmid DNA
-
Garneau JE, Dupuis MÈ, Villion M, Romero DA, Barrangou R, et al. (2010) The CRISPR/Cas bacterial immune system cleaves bacteriophage and plasmid DNA. Nature 468: 67-71.
-
(2010)
Nature
, vol.468
, pp. 67-71
-
-
Garneau, J.E.1
Dupuis, M.E.2
Villion, M.3
Romero, D.A.4
Barrangou, R.5
-
23
-
-
77956213914
-
The small, slow and specialized CRISPR and anti-CRISPR of Escherichia and Salmonella
-
Touchon M, Rocha EP, (2010) The small, slow and specialized CRISPR and anti-CRISPR of Escherichia and Salmonella. PLoS One 5: e11126.
-
(2010)
PLoS One
, vol.5
-
-
Touchon, M.1
Rocha, E.P.2
-
24
-
-
79960418330
-
Comparative genomics of 28 Salmonella enterica isolates: evidence for CRISPR-mediated adaptive sublineage evolution
-
Fricke WF, Mammel MK, McDermott PF, Tartera C, White DG, et al. (2011) Comparative genomics of 28 Salmonella enterica isolates: evidence for CRISPR-mediated adaptive sublineage evolution. J Bacteriol 193: 3556-3568.
-
(2011)
J Bacteriol
, vol.193
, pp. 3556-3568
-
-
Fricke, W.F.1
Mammel, M.K.2
McDermott, P.F.3
Tartera, C.4
White, D.G.5
-
25
-
-
83055190893
-
Molecular typing and subtyping of Salmonella by identification of the variable nucleotide sequences of the CRISPR loci
-
French Patent Application (no. FR07/09188) filed on December 28, 2007. International Patent Application (no. PCT/IB2008/004004) filed on Dec. 29, 2008
-
Weill FX, Fabre-Berland L, Guibert V, Diancourt L, Brisse S, (2007) Molecular typing and subtyping of Salmonella by identification of the variable nucleotide sequences of the CRISPR loci. French Patent Application (no. FR07/09188) filed on December 28, 2007. International Patent Application (no. PCT/IB2008/004004) filed on Dec. 29, 2008.
-
(2007)
-
-
Weill, F.X.1
Fabre-Berland, L.2
Guibert, V.3
Diancourt, L.4
Brisse, S.5
-
26
-
-
79953205601
-
Novel virulence gene and clustered regularly interspaced short palindromic repeat (CRISPR) multilocus sequence typing scheme for subtyping of the major serovars of Salmonella enterica subsp. enterica
-
Liu F, Barrangou R, Gerner-Smidt P, Ribot EM, Knabel SJ, et al. (2011) Novel virulence gene and clustered regularly interspaced short palindromic repeat (CRISPR) multilocus sequence typing scheme for subtyping of the major serovars of Salmonella enterica subsp. enterica. Appl Environ Microbiol 77: 1946-1956.
-
(2011)
Appl Environ Microbiol
, vol.77
, pp. 1946-1956
-
-
Liu, F.1
Barrangou, R.2
Gerner-Smidt, P.3
Ribot, E.M.4
Knabel, S.J.5
-
27
-
-
79960084127
-
Subtyping Salmonella enterica serovar Enteritidis isolates from different sources by using sequence typing based on virulence genes and clustered regularly interspaced short palindromic repeats (CRISPRs)
-
Liu F, Kariyawasam S, Jayarao BM, Barrangou R, Gerner-Smidt P, et al. (2011) Subtyping Salmonella enterica serovar Enteritidis isolates from different sources by using sequence typing based on virulence genes and clustered regularly interspaced short palindromic repeats (CRISPRs). Appl Environ Microbiol 77: 4520-4526.
-
(2011)
Appl Environ Microbiol
, vol.77
, pp. 4520-4526
-
-
Liu, F.1
Kariyawasam, S.2
Jayarao, B.M.3
Barrangou, R.4
Gerner-Smidt, P.5
-
28
-
-
34248400310
-
A guild of 45 CRISPR-associated (Cas) protein families and multiple CRISPR/Cas subtypes exist in prokaryotic genomes
-
Haft DH, Selengut J, Mongodin EF, Nelson KE, (2005) A guild of 45 CRISPR-associated (Cas) protein families and multiple CRISPR/Cas subtypes exist in prokaryotic genomes. PLoS Comput Biol 1: e60.
-
(2005)
PLoS Comput Biol
, vol.1
-
-
Haft, D.H.1
Selengut, J.2
Mongodin, E.F.3
Nelson, K.E.4
-
29
-
-
75849154794
-
CRISPI: a CRISPR interactive database
-
Rousseau C, Gonnet M, Le Romancer M, Nicolas J, (2009) CRISPI: a CRISPR interactive database. Bioinformatics 25: 3317-3318.
-
(2009)
Bioinformatics
, vol.25
, pp. 3317-3318
-
-
Rousseau, C.1
Gonnet, M.2
Le Romancer, M.3
Nicolas, J.4
-
30
-
-
80052038815
-
Genome sequencing reveals diversification of virulence factor content and possible host adaptation in distinct subpopulations of Salmonella enterica
-
den Bakker HC, Moreno Switt AI, Govoni G, Cummings CA, Ranieri ML, et al. (2011) Genome sequencing reveals diversification of virulence factor content and possible host adaptation in distinct subpopulations of Salmonella enterica. BMC Genomics 12: 425.
-
(2011)
BMC Genomics
, vol.12
, pp. 425
-
-
den Bakker, H.C.1
Moreno Switt, A.I.2
Govoni, G.3
Cummings, C.A.4
Ranieri, M.L.5
-
31
-
-
79960935954
-
Recombination and population structure in Salmonella enterica
-
Didelot X, Bowden R, Street T, Golubchik T, Spencer C, et al. (2011) Recombination and population structure in Salmonella enterica. PLoS Genet 7: e1002191.
-
(2011)
PLoS Genet
, vol.7
-
-
Didelot, X.1
Bowden, R.2
Street, T.3
Golubchik, T.4
Spencer, C.5
-
32
-
-
78649644200
-
Evolution and population structure of Salmonella enterica serovar Newport
-
Sangal V, Harbottle H, Mazzoni CJ, Helmuth R, Guerra B, et al. (2010) Evolution and population structure of Salmonella enterica serovar Newport. J. Bacteriol 192: 6465-6476.
-
(2010)
J. Bacteriol
, vol.192
, pp. 6465-6476
-
-
Sangal, V.1
Harbottle, H.2
Mazzoni, C.J.3
Helmuth, R.4
Guerra, B.5
-
33
-
-
33644919990
-
Multidrug resistance in Salmonella enterica serotype Typhimurium from humans in France (1993 to 2003)
-
Weill FX, Guesnier F, Guibert V, Timinouni M, Demartin M, et al. (2006) Multidrug resistance in Salmonella enterica serotype Typhimurium from humans in France (1993 to 2003). J Clin Microbiol 44: 700-708.
-
(2006)
J Clin Microbiol
, vol.44
, pp. 700-708
-
-
Weill, F.X.1
Guesnier, F.2
Guibert, V.3
Timinouni, M.4
Demartin, M.5
-
34
-
-
73249140740
-
Epidemic multiple drug resistant Salmonella Typhimurium causing invasive disease in sub-Saharan Africa have a distinct genotype
-
Kingsley RA, Msefula CL, Thomson NR, Kariuki S, Holt KE, et al. (2009) Epidemic multiple drug resistant Salmonella Typhimurium causing invasive disease in sub-Saharan Africa have a distinct genotype. Genome Res 19: 2279-2287.
-
(2009)
Genome Res
, vol.19
, pp. 2279-2287
-
-
Kingsley, R.A.1
Msefula, C.L.2
Thomson, N.R.3
Kariuki, S.4
Holt, K.E.5
-
35
-
-
60849119533
-
Molecular characterization and antimicrobial susceptibility of Salmonella isolates from infections in humans in Henan Province, China
-
Xia S, Hendriksen RS, Xie Z, Huang L, Zhang J, et al. (2009) Molecular characterization and antimicrobial susceptibility of Salmonella isolates from infections in humans in Henan Province, China. J Clin Microbiol 47: 401-409.
-
(2009)
J Clin Microbiol
, vol.47
, pp. 401-409
-
-
Xia, S.1
Hendriksen, R.S.2
Xie, Z.3
Huang, L.4
Zhang, J.5
-
36
-
-
77954265692
-
Nationwide outbreak of Salmonella enterica serotype 4,12:i:- infections in France, linked to dried pork sausage, March-May 2010
-
Bone A, Noel H, Le Hello S, Pihier N, Danan C, et al. (2010) Nationwide outbreak of Salmonella enterica serotype 4,12:i:- infections in France, linked to dried pork sausage, March-May 2010. Euro Surveill 15: 19592.
-
(2010)
Euro Surveill
, vol.15
, pp. 19592
-
-
Bone, A.1
Noel, H.2
Le Hello, S.3
Pihier, N.4
Danan, C.5
-
37
-
-
83055180142
-
Methodologies for Salmonella enterica subsp. enterica subtyping: gold standards and alternatives
-
Wattiau P, Boland C, Bertrand S, (2011) Methodologies for Salmonella enterica subsp. enterica subtyping: gold standards and alternatives. Appl Environ Microbiol 77: 7877-7885.
-
(2011)
Appl Environ Microbiol
, vol.77
, pp. 7877-7885
-
-
Wattiau, P.1
Boland, C.2
Bertrand, S.3
-
38
-
-
79951486830
-
Molecular determination of H antigens of Salmonella by use of a microsphere-based liquid array
-
McQuiston JR, Waters RJ, Dinsmore BA, Mikoleit ML, Fields PI, (2011) Molecular determination of H antigens of Salmonella by use of a microsphere-based liquid array. J Clin Microbiol 49: 565-573.
-
(2011)
J Clin Microbiol
, vol.49
, pp. 565-573
-
-
McQuiston, J.R.1
Waters, R.J.2
Dinsmore, B.A.3
Mikoleit, M.L.4
Fields, P.I.5
-
39
-
-
84872156068
-
Multilocus sequence typing as a replacement for serotyping in Salmonella enterica
-
Plos Pathogens. In revision
-
Achtman M, Wain J, Weill FX, Nair S, Zhou Z, et al. Multilocus sequence typing as a replacement for serotyping in Salmonella enterica. Plos Pathogens. In revision.
-
-
-
Achtman, M.1
Wain, J.2
Weill, F.X.3
Nair, S.4
Zhou, Z.5
-
40
-
-
33751558792
-
Evolutionary history of Salmonella Typhi
-
Roumagnac P, Weill FX, Dolecek C, Baker S, Brisse S, et al. (2006) Evolutionary history of Salmonella Typhi. Science 314: 1301-1304.
-
(2006)
Science
, vol.314
, pp. 1301-1304
-
-
Roumagnac, P.1
Weill, F.X.2
Dolecek, C.3
Baker, S.4
Brisse, S.5
-
41
-
-
76749124615
-
Development of a new nomenclature for Salmonella typhimurium multilocus variable number of tandem repeats analysis (MLVA)
-
Larsson JT, Torpdahl M, Petersen RF, Sorensen G, Lindstedt BA, et al. (2009) Development of a new nomenclature for Salmonella typhimurium multilocus variable number of tandem repeats analysis (MLVA). Euro Surveill 14: 19174.
-
(2009)
Euro Surveill
, vol.14
, pp. 19174
-
-
Larsson, J.T.1
Torpdahl, M.2
Petersen, R.F.3
Sorensen, G.4
Lindstedt, B.A.5
-
42
-
-
0023738045
-
Numerical index of the discriminatory ability of typing systems: an application of Simpson's index of diversity
-
Hunter PR, Gaston MA, (1988) Numerical index of the discriminatory ability of typing systems: an application of Simpson's index of diversity. J Clin Microbiol 26: 2465-2466.
-
(1988)
J Clin Microbiol
, vol.26
, pp. 2465-2466
-
-
Hunter, P.R.1
Gaston, M.A.2
-
43
-
-
76649135130
-
Mycobacterium tuberculosis complex CRISPR genotyping: improving efficiency, throughput and discriminative power of 'spoligotyping' with new spacers and a microbead-based hybridization assay
-
Zhang J, Abadia E, Refregier G, Tafaj S, Boschiroli ML, et al. (2010) Mycobacterium tuberculosis complex CRISPR genotyping: improving efficiency, throughput and discriminative power of 'spoligotyping' with new spacers and a microbead-based hybridization assay. J Med Microbiol 59: 285-294.
-
(2010)
J Med Microbiol
, vol.59
, pp. 285-294
-
-
Zhang, J.1
Abadia, E.2
Refregier, G.3
Tafaj, S.4
Boschiroli, M.L.5
|