-
1
-
-
0013645324
-
Classification of bacteria: a realistic scheme with special reference to the classification of Salmonella and Escherichia species
-
Munksgaard, Copenhagen
-
Kauffmann F, (1975) Classification of bacteria: a realistic scheme with special reference to the classification of Salmonella and Escherichia species. Munksgaard, Copenhagen.
-
(1975)
-
-
Kauffmann, F.1
-
2
-
-
57449095929
-
Antigenic formulae of the Salmonella serovars, 9th Edition
-
WHO Collaborating Centre for Reference and Research on Salmonella, Institut Pasteur, Paris, France
-
Grimont P, Weill F, (2007) Antigenic formulae of the Salmonella serovars, 9th Edition. WHO Collaborating Centre for Reference and Research on Salmonella, Institut Pasteur, Paris, France.
-
(2007)
-
-
Grimont, P.1
Weill, F.2
-
3
-
-
0033674128
-
Host adapted serotypes of Salmonella enterica
-
Uzzau S, Brown DJ, Wallis T, Rubino S, Leori G, et al. (2000) Host adapted serotypes of Salmonella enterica. Epidemiol Infect 125: 229-255.
-
(2000)
Epidemiol Infect
, vol.125
, pp. 229-255
-
-
Uzzau, S.1
Brown, D.J.2
Wallis, T.3
Rubino, S.4
Leori, G.5
-
4
-
-
33644552122
-
Web- based surveillance and global Salmonella distribution, 2000-2002
-
Galanis E, Lo Fo Wong DM, Patrick ME, Binsztein N, Cieslik A, et al. (2006) Web- based surveillance and global Salmonella distribution, 2000-2002. Emerg Infect Dis 12: 381-388.
-
(2006)
Emerg Infect Dis
, vol.12
, pp. 381-388
-
-
Galanis, E.1
Lo Fo Wong, D.M.2
Patrick, M.E.3
Binsztein, N.4
Cieslik, A.5
-
5
-
-
0007989154
-
Toward a population genetic analysis of Salmonella: genetic diversity and relationships among strains of serotypes S. choleraesuis, S. derby, S. dublin, S. enteritidis, S. heidelberg, S. infantis, S. newport, and S. typhimurium
-
Beltran P, Musser JM, Helmuth R, Farmer JJ, Frerichs WM, et al. (1988) Toward a population genetic analysis of Salmonella: genetic diversity and relationships among strains of serotypes S. choleraesuis, S. derby, S. dublin, S. enteritidis, S. heidelberg, S. infantis, S. newport, and S. typhimurium. Proceedings of the National Academy of Sciences of the United States of America 85: 7753-7757.
-
(1988)
Proceedings of the National Academy of Sciences of the United States of America
, vol.85
, pp. 7753-7757
-
-
Beltran, P.1
Musser, J.M.2
Helmuth, R.3
Farmer, J.J.4
Frerichs, W.M.5
-
6
-
-
0025335992
-
Evolutionary genetic relationships of clones of Salmonella serovars that cause human typhoid and other enteric fevers
-
Selander RK, Beltran P, Smith NH, Helmuth R, Rubin FA, et al. (1990) Evolutionary genetic relationships of clones of Salmonella serovars that cause human typhoid and other enteric fevers. Infect Immun 58: 2262-2275.
-
(1990)
Infect Immun
, vol.58
, pp. 2262-2275
-
-
Selander, R.K.1
Beltran, P.2
Smith, N.H.3
Helmuth, R.4
Rubin, F.A.5
-
7
-
-
13144252236
-
Multilocus sequence typing: A portable approach to the identification of clones within populations of pathogenic microorganisms
-
Maiden MCJ, Bygraves JA, Feil E, Morelli G, Russell JE, et al. (1998) Multilocus sequence typing: A portable approach to the identification of clones within populations of pathogenic microorganisms. PNAS 95: 3140-3145.
-
(1998)
PNAS
, vol.95
, pp. 3140-3145
-
-
Maiden, M.C.J.1
Bygraves, J.A.2
Feil, E.3
Morelli, G.4
Russell, J.E.5
-
8
-
-
33750290454
-
Multilocus sequence typing of bacteria
-
Maiden MC, (2006) Multilocus sequence typing of bacteria. Annual Review of Microbiology 60: 561-588.
-
(2006)
Annual Review of Microbiology
, vol.60
, pp. 561-588
-
-
Maiden, M.C.1
-
9
-
-
0036792524
-
Salmonella typhi, the causative agent of typhoid fever, is approximately 50,000 years old
-
Kidgell C, Reichard U, Wain J, Linz B, Torpdahl M, et al. (2002) Salmonella typhi, the causative agent of typhoid fever, is approximately 50,000 years old. Infect Genet Evol 2: 39-45.
-
(2002)
Infect Genet Evol
, vol.2
, pp. 39-45
-
-
Kidgell, C.1
Reichard, U.2
Wain, J.3
Linz, B.4
Torpdahl, M.5
-
10
-
-
26644454381
-
Genotypic characterization of Salmonella by multilocus sequence typing, pulsed-field gel electrophoresis and amplified fragment length polymorphism
-
Torpdahl M, Skov MN, Sandvang D, Baggesen DL, (2005) Genotypic characterization of Salmonella by multilocus sequence typing, pulsed-field gel electrophoresis and amplified fragment length polymorphism. J Microbiol Methods 63: 173-184.
-
(2005)
J Microbiol Methods
, vol.63
, pp. 173-184
-
-
Torpdahl, M.1
Skov, M.N.2
Sandvang, D.3
Baggesen, D.L.4
-
11
-
-
78649644200
-
Evolution and population structure of Salmonella enterica serovar Newport
-
Sangal V, Harbottle H, Mazzoni CJ, Helmuth R, Guerra B, et al. (2010) Evolution and population structure of Salmonella enterica serovar Newport. J Bacteriol 192: 6465-6476.
-
(2010)
J Bacteriol
, vol.192
, pp. 6465-6476
-
-
Sangal, V.1
Harbottle, H.2
Mazzoni, C.J.3
Helmuth, R.4
Guerra, B.5
-
12
-
-
33751207098
-
Mismatch induced speciation in Salmonella: model and data
-
Falush D, Torpdahl M, Didelot X, Conrad DF, Wilson DJ, et al. (2006) Mismatch induced speciation in Salmonella: model and data. Phil Trans R Soc B 361: 2045-53.
-
(2006)
Phil Trans R Soc B
, vol.361
, pp. 2045-2053
-
-
Falush, D.1
Torpdahl, M.2
Didelot, X.3
Conrad, D.F.4
Wilson, D.J.5
-
13
-
-
0346734125
-
Limited boundaries for extensive horizontal gene transfer among Salmonella pathogens
-
Brown EW, Mammel MK, LeClerc JE, Cebula TA, (2003) Limited boundaries for extensive horizontal gene transfer among Salmonella pathogens. Proc Natl Acad Sci 100: 15676-15681.
-
(2003)
Proc Natl Acad Sci
, vol.100
, pp. 15676-15681
-
-
Brown, E.W.1
Mammel, M.K.2
LeClerc, J.E.3
Cebula, T.A.4
-
14
-
-
33645539749
-
Frequent recombination and low level of clonality within Salmonella enterica subspecies I
-
Octavia S, Lan R, (2006) Frequent recombination and low level of clonality within Salmonella enterica subspecies I. Microbiology 152: 1099-1108.
-
(2006)
Microbiology
, vol.152
, pp. 1099-1108
-
-
Octavia, S.1
Lan, R.2
-
15
-
-
77954143123
-
Impact of recombination on bacterial evolution
-
Didelot X, Maiden MC, (2010) Impact of recombination on bacterial evolution. Trends Microbiol 18: 315-322.
-
(2010)
Trends Microbiol
, vol.18
, pp. 315-322
-
-
Didelot, X.1
Maiden, M.C.2
-
16
-
-
76949094947
-
The population genetics of commensal Escherichia coli
-
Tenaillon O, Skurnik D, Picard B, Denamur E, (2010) The population genetics of commensal Escherichia coli. Nature Reviews Microbiology 8: 207-217.
-
(2010)
Nature Reviews Microbiology
, vol.8
, pp. 207-217
-
-
Tenaillon, O.1
Skurnik, D.2
Picard, B.3
Denamur, E.4
-
17
-
-
0035950182
-
Complete genome sequence of Salmonella enterica serovar Typhimurium LT2
-
McClelland M, Sanderson KE, Spieth J, Clifton SW, Latreille P, et al. (2001) Complete genome sequence of Salmonella enterica serovar Typhimurium LT2. Nature 413: 852-856.
-
(2001)
Nature
, vol.413
, pp. 852-856
-
-
McClelland, M.1
Sanderson, K.E.2
Spieth, J.3
Clifton, S.W.4
Latreille, P.5
-
18
-
-
0035950154
-
Complete genome sequence of a multiple drug resistant Salmonella enterica serovar Typhi CT18
-
Parkhill J, Dougan G, James KD, Thomson NR, Pickard D, et al. (2001) Complete genome sequence of a multiple drug resistant Salmonella enterica serovar Typhi CT18. Nature 413: 848-852.
-
(2001)
Nature
, vol.413
, pp. 848-852
-
-
Parkhill, J.1
Dougan, G.2
James, K.D.3
Thomson, N.R.4
Pickard, D.5
-
19
-
-
0037377818
-
Comparative genomics of Salmonella enterica serovar Typhi strains Ty2 and CT18
-
Deng W, Liou SR, Plunkett G, Mayhew GF, Rose DJ, et al. (2003) Comparative genomics of Salmonella enterica serovar Typhi strains Ty2 and CT18. J Bacteriol 185: 2330-2337.
-
(2003)
J Bacteriol
, vol.185
, pp. 2330-2337
-
-
Deng, W.1
Liou, S.R.2
Plunkett, G.3
Mayhew, G.F.4
Rose, D.J.5
-
20
-
-
9644254192
-
Comparison of genome degradation in Paratyphi A and Typhi, human-restricted serovars of Salmonella enterica that cause typhoid
-
McClelland M, Sanderson KE, Clifton SW, Latreille P, Porwollik S, et al. (2004) Comparison of genome degradation in Paratyphi A and Typhi, human-restricted serovars of Salmonella enterica that cause typhoid. Nat Genet 36: 1268-1274.
-
(2004)
Nat Genet
, vol.36
, pp. 1268-1274
-
-
McClelland, M.1
Sanderson, K.E.2
Clifton, S.W.3
Latreille, P.4
Porwollik, S.5
-
21
-
-
15044363888
-
The genome sequence of Salmonella enterica serovar Choleraesuis, a highly invasive and resistant zoonotic pathogen
-
Chiu CH, Tang P, Chu C, Hu S, Bao Q, et al. (2005) The genome sequence of Salmonella enterica serovar Choleraesuis, a highly invasive and resistant zoonotic pathogen. Nucleic Acids Res 33: 1690-1698.
-
(2005)
Nucleic Acids Res
, vol.33
, pp. 1690-1698
-
-
Chiu, C.H.1
Tang, P.2
Chu, C.3
Hu, S.4
Bao, Q.5
-
22
-
-
33846032295
-
A bimodal pattern of relatedness between the Salmonella Paratyphi A and Typhi genomes: Convergence or divergence by homologous recombination?
-
Didelot X, Achtman M, Parkhill J, Thomson NR, Falush D, (2007) A bimodal pattern of relatedness between the Salmonella Paratyphi A and Typhi genomes: Convergence or divergence by homologous recombination? Genome Res 17: 61-68.
-
(2007)
Genome Res
, vol.17
, pp. 61-68
-
-
Didelot, X.1
Achtman, M.2
Parkhill, J.3
Thomson, N.R.4
Falush, D.5
-
23
-
-
33751558792
-
Evolutionary History of Salmonella Typhi
-
Roumagnac P, Weill FX, Dolecek C, Baker S, Brisse S, et al. (2006) Evolutionary History of Salmonella Typhi. Science 314: 1301-1304.
-
(2006)
Science
, vol.314
, pp. 1301-1304
-
-
Roumagnac, P.1
Weill, F.X.2
Dolecek, C.3
Baker, S.4
Brisse, S.5
-
24
-
-
48349124258
-
High-throughput sequencing provides insights into genome variation and evolution in Salmonella Typhi
-
Holt KE, Parkhill J, Mazzoni CJ, Roumagnac P, Weill FX, et al. (2008) High-throughput sequencing provides insights into genome variation and evolution in Salmonella Typhi. Nat Genet 40: 987-993.
-
(2008)
Nat Genet
, vol.40
, pp. 987-993
-
-
Holt, K.E.1
Parkhill, J.2
Mazzoni, C.J.3
Roumagnac, P.4
Weill, F.X.5
-
25
-
-
75549086416
-
The Genomes On Line Database (GOLD) in 2009: status of genomic and metagenomic projects and their associated metadata
-
Liolios K, Chen IMA, Mavromatis K, Tavernarakis N, Hugenholtz P, et al. (2010) The Genomes On Line Database (GOLD) in 2009: status of genomic and metagenomic projects and their associated metadata. Nucleic Acids Research 38: D346-D354.
-
(2010)
Nucleic Acids Research
, vol.38
, pp. 346-354
-
-
Liolios, K.1
Chen, I.M.A.2
Mavromatis, K.3
Tavernarakis, N.4
Hugenholtz, P.5
-
26
-
-
70350470136
-
Toward the Use of Genomics to Study Microevolutionary Change in Bacteria
-
doi:10.1371/journal.pgen.1000627
-
Falush D, (2009) Toward the Use of Genomics to Study Microevolutionary Change in Bacteria. PLoS Genet 5: e1000627 doi:10.1371/journal.pgen.1000627.
-
(2009)
PLoS Genet
, vol.5
-
-
Falush, D.1
-
27
-
-
71049183067
-
Genealogical typing of Neisseria meningitidis
-
Didelot X, Urwin R, Maiden MCJ, Falush D, (2009) Genealogical typing of Neisseria meningitidis. Microbiology 155: 3176-3186.
-
(2009)
Microbiology
, vol.155
, pp. 3176-3186
-
-
Didelot, X.1
Urwin, R.2
Maiden, M.C.J.3
Falush, D.4
-
28
-
-
0024263226
-
A novel method for nucleic acid sequence determination
-
Bains W, Smith GC, (1988) A novel method for nucleic acid sequence determination. J Theor Biol 135: 303-307.
-
(1988)
J Theor Biol
, vol.135
, pp. 303-307
-
-
Bains, W.1
Smith, G.C.2
-
29
-
-
15944384859
-
Microarray-based resequencing of multiple Bacillus anthracis isolates
-
Zwick ME, Mcafee F, Cutler DJ, Read TD, Ravel J, et al. (2005) Microarray-based resequencing of multiple Bacillus anthracis isolates. Genome Biol 6: R10.
-
(2005)
Genome Biol
, vol.6
-
-
Zwick, M.E.1
McAfee, F.2
Cutler, D.J.3
Read, T.D.4
Ravel, J.5
-
30
-
-
1942536969
-
Use of a high-density DNA probe array for detecting mutations involved in rifampicin resistance in Mycobacterium tuberculosis
-
Sougakoff W, Rodrigue M, Truffot-Pernot C, Renard M, Durin N, et al. (2004) Use of a high-density DNA probe array for detecting mutations involved in rifampicin resistance in Mycobacterium tuberculosis. Clin Microbiol Infect 10: 289-294.
-
(2004)
Clin Microbiol Infect
, vol.10
, pp. 289-294
-
-
Sougakoff, W.1
Rodrigue, M.2
Truffot-Pernot, C.3
Renard, M.4
Durin, N.5
-
31
-
-
49749141605
-
Genotyping of Bacillus cereus Strains by Microarray-Based Resequencing
-
doi:10.1371/journal.pone.0002513
-
Zwick ME, Kiley MP, Stewart AC, Mateczun A, Read TD, (2008) Genotyping of Bacillus cereus Strains by Microarray-Based Resequencing. PLoS ONE 3: e2513 doi:10.1371/journal.pone.0002513.
-
(2008)
PLoS ONE
, vol.3
-
-
Zwick, M.E.1
Kiley, M.P.2
Stewart, A.C.3
Mateczun, A.4
Read, T.D.5
-
32
-
-
4644252708
-
Uses of Staphylococcus aureus GeneChips in genotyping and genetic composition analysisic composition analysis
-
Dunman PM, Mounts W, McAleese F, Immermann F, Macapagal D, et al. (2004) Uses of Staphylococcus aureus GeneChips in genotyping and genetic composition analysisic composition analysis. J Clin Microbiol 42: 4275-4283.
-
(2004)
J Clin Microbiol
, vol.42
, pp. 4275-4283
-
-
Dunman, P.M.1
Mounts, W.2
McAleese, F.3
Immermann, F.4
Macapagal, D.5
-
33
-
-
43749120976
-
Molecular characterization of Neisseria meningitidis isolates using a resequencing DNA microarray
-
Corless CE, Kaczmarski E, Borrow R, Guiver M, (2008) Molecular characterization of Neisseria meningitidis isolates using a resequencing DNA microarray. J Mol Diagn 10: 265-271.
-
(2008)
J Mol Diagn
, vol.10
, pp. 265-271
-
-
Corless, C.E.1
Kaczmarski, E.2
Borrow, R.3
Guiver, M.4
-
34
-
-
70449380983
-
Whole genome single nucleotide polymorphism based phylogeny of Francisella tularensis and its application to the development of a strain typing assay
-
Pandya GA, Holmes MH, Petersen JM, Pradhan S, Karamycheva SA, et al. (2009) Whole genome single nucleotide polymorphism based phylogeny of Francisella tularensis and its application to the development of a strain typing assay. BMC Microbiol 9: 213-213.
-
(2009)
BMC Microbiol
, vol.9
, pp. 213
-
-
Pandya, G.A.1
Holmes, M.H.2
Petersen, J.M.3
Pradhan, S.4
Karamycheva, S.A.5
-
35
-
-
36348943603
-
Single-nucleotide-polymorphism typing and genetic relationships of Salmonella enterica serovar Typhi isolates
-
Octavia S, Lan R, (2007) Single-nucleotide-polymorphism typing and genetic relationships of Salmonella enterica serovar Typhi isolates. J Clin Microbiol 45: 3795-3801.
-
(2007)
J Clin Microbiol
, vol.45
, pp. 3795-3801
-
-
Octavia, S.1
Lan, R.2
-
36
-
-
53849111617
-
Evolution, population structure, and phylogeography of genetically monomorphic bacterial pathogens
-
Achtman M, (2008) Evolution, population structure, and phylogeography of genetically monomorphic bacterial pathogens. Annu Rev Microbiol 62: 53-70.
-
(2008)
Annu Rev Microbiol
, vol.62
, pp. 53-70
-
-
Achtman, M.1
-
37
-
-
68549133210
-
Multiple-locus variable-number tandem-repeat analysis of Salmonella enterica serovar Typhi
-
Octavia S, Lan R, (2009) Multiple-locus variable-number tandem-repeat analysis of Salmonella enterica serovar Typhi. J Clin Microbiol 47: 2369-2376.
-
(2009)
J Clin Microbiol
, vol.47
, pp. 2369-2376
-
-
Octavia, S.1
Lan, R.2
-
38
-
-
0034118493
-
Inference of population structure using multilocus genotype data
-
Pritchard J, Stephens M, Donnelly PJ, (2000) Inference of population structure using multilocus genotype data. Genetics 155: 945-959.
-
(2000)
Genetics
, vol.155
, pp. 945-959
-
-
Pritchard, J.1
Stephens, M.2
Donnelly, P.J.3
-
39
-
-
0041817568
-
Inference of population structure using multilocus genotype data linked loci and correlated allele frequencies
-
Falush D, Stephens M, Pritchard J, (2003) Inference of population structure using multilocus genotype data linked loci and correlated allele frequencies. Genetics 164: 1567-1587.
-
(2003)
Genetics
, vol.164
, pp. 1567-1587
-
-
Falush, D.1
Stephens, M.2
Pritchard, J.3
-
40
-
-
34249027580
-
Inference of Bacterial Microevolution Using Multilocus Sequence Data
-
Didelot X, Falush D, (2007) Inference of Bacterial Microevolution Using Multilocus Sequence Data. Genetics 175: 1251-1266.
-
(2007)
Genetics
, vol.175
, pp. 1251-1266
-
-
Didelot, X.1
Falush, D.2
-
41
-
-
59649113973
-
Evolution of pathogenicity in the Bacillus cereus group
-
Didelot X, Barker M, Falush D, Priest F, (2009) Evolution of pathogenicity in the Bacillus cereus group. Systematic and Applied Microbiology 32: 81-90.
-
(2009)
Systematic and Applied Microbiology
, vol.32
, pp. 81-90
-
-
Didelot, X.1
Barker, M.2
Falush, D.3
Priest, F.4
-
42
-
-
28444474563
-
Identification of Core and Variable Components of the Salmonella enterica Subspecies I Genome by Microarray
-
Anjum MF, Marooney C, Fookes M, Baker S, Dougan G, et al. (2005) Identification of Core and Variable Components of the Salmonella enterica Subspecies I Genome by Microarray. Infect Immun 73: 7894-7905.
-
(2005)
Infect Immun
, vol.73
, pp. 7894-7905
-
-
Anjum, M.F.1
Marooney, C.2
Fookes, M.3
Baker, S.4
Dougan, G.5
-
43
-
-
0025133386
-
Molecular Evolution of the Escherichia coli Chromosome. III. Clonal Frames
-
Milkman R, Bridges MM, (1990) Molecular Evolution of the Escherichia coli Chromosome. III. Clonal Frames. Genetics 126: 505-517.
-
(1990)
Genetics
, vol.126
, pp. 505-517
-
-
Milkman, R.1
Bridges, M.M.2
-
44
-
-
0032733829
-
The relative contributions of recombination and mutation to the divergence of clones of Neisseria meningitidis
-
Feil E, Maiden M, Achtman M, Spratt B, (1999) The relative contributions of recombination and mutation to the divergence of clones of Neisseria meningitidis. Mol Biol Evol 16: 1496-1502.
-
(1999)
Mol Biol Evol
, vol.16
, pp. 1496-1502
-
-
Feil, E.1
Maiden, M.2
Achtman, M.3
Spratt, B.4
-
45
-
-
79960959548
-
BMC Genomics
-
Holt KE, Thomson NR, Wain J, Langridge GC, Hasan R, et al. (2009) BMC Genomics. BMC Genomics 12: 1-12.
-
(2009)
BMC Genomics
, vol.12
, pp. 1-12
-
-
Holt, K.E.1
Thomson, N.R.2
Wain, J.3
Langridge, G.C.4
Hasan, R.5
-
46
-
-
77957331293
-
Microevolution of Helicobacter pylori during prolonged infection of single hosts and within families
-
doi:10.1371/journal.pgen.1001036
-
Morelli G, Didelot X, Kusecek B, Schwarz S, Bahlawane C, et al. (2010) Microevolution of Helicobacter pylori during prolonged infection of single hosts and within families. PLoS Genet 6: e1001036 doi:10.1371/journal.pgen.1001036.
-
(2010)
PLoS Genet
, vol.6
-
-
Morelli, G.1
Didelot, X.2
Kusecek, B.3
Schwarz, S.4
Bahlawane, C.5
-
47
-
-
0033793521
-
Consequences of recombination on traditional phylogenetic analysis
-
Schierup MH, Hein J, (2000) Consequences of recombination on traditional phylogenetic analysis. Genetics 156: 879-891.
-
(2000)
Genetics
, vol.156
, pp. 879-891
-
-
Schierup, M.H.1
Hein, J.2
-
48
-
-
0010468533
-
Factors determining the accuracy of cladogram estimation evaluation using computer-simulation
-
Fiala KL, Sokal RR, (1985) Factors determining the accuracy of cladogram estimation evaluation using computer-simulation. Evolution 39: 609622.
-
(1985)
Evolution
, vol.39
, pp. 609622
-
-
Fiala, K.L.1
Sokal, R.R.2
-
49
-
-
35948940118
-
The rise and spread of a new pathogen: seroresistant Moraxella catarrhalis
-
Wirth T, Morelli G, Kusecek B, van Belkum A, van der Schee C, et al. (2007) The rise and spread of a new pathogen: seroresistant Moraxella catarrhalis. Genome Res 17: 1647-1656.
-
(2007)
Genome Res
, vol.17
, pp. 1647-1656
-
-
Wirth, T.1
Morelli, G.2
Kusecek, B.3
van Belkum, A.4
van der Schee, C.5
-
50
-
-
55149118920
-
Lineage specific recombination rates and microevolution in Listeria monocytogenes
-
den Bakker H, Didelot X, Fortes E, Nightingale K, Wiedmann M, (2008) Lineage specific recombination rates and microevolution in Listeria monocytogenes. BMC Evolutionary Biology 8: 277.
-
(2008)
BMC Evolutionary Biology
, vol.8
, pp. 277
-
-
den Bakker, H.1
Didelot, X.2
Fortes, E.3
Nightingale, K.4
Wiedmann, M.5
-
51
-
-
51349158939
-
Genome-wide analyses reveal lineage specific contributions of positive selection and recombination to the evolution of Listeria monocytogenes
-
Orsi R, Sun Q, Wiedmann M, (2008) Genome-wide analyses reveal lineage specific contributions of positive selection and recombination to the evolution of Listeria monocytogenes. BMC Evolutionary Biology 8: 233.
-
(2008)
BMC Evolutionary Biology
, vol.8
, pp. 233
-
-
Orsi, R.1
Sun, Q.2
Wiedmann, M.3
-
52
-
-
79251573854
-
Inference of homologous recombination in bacteria using whole-genome sequences
-
Didelot X, Lawson D, Darling A, Falush D, (2010) Inference of homologous recombination in bacteria using whole-genome sequences. Genetics 186: 1435-1449.
-
(2010)
Genetics
, vol.186
, pp. 1435-1449
-
-
Didelot, X.1
Lawson, D.2
Darling, A.3
Falush, D.4
-
53
-
-
33846703734
-
Population genetic approaches to assigning the source of human pathogens: host associated genetic import in Campylobacter jejuni
-
McCarthy N, Colles F, Dingle K, Bagnall M, Manning G, et al. (2007) Population genetic approaches to assigning the source of human pathogens: host associated genetic import in Campylobacter jejuni. Emerging infectious diseases 13: 267-272.
-
(2007)
Emerging Infectious Diseases
, vol.13
, pp. 267-272
-
-
McCarthy, N.1
Colles, F.2
Dingle, K.3
Bagnall, M.4
Manning, G.5
-
54
-
-
84887212405
-
Salmonella paratyphi C: genetic divergence from Salmonella choleraesuis and pathogenic convergence with Salmonella typhi
-
doi:10.1371/journal.pone.0004510
-
Liu WQ, Feng Y, Wang Y, Zou QH, Chen F, et al. (2009) Salmonella paratyphi C: genetic divergence from Salmonella choleraesuis and pathogenic convergence with Salmonella typhi. PLoS ONE 4: e4510 doi:10.1371/journal.pone.0004510.
-
(2009)
PLoS ONE
, vol.4
-
-
Liu, W.Q.1
Feng, Y.2
Wang, Y.3
Zou, Q.H.4
Chen, F.5
-
55
-
-
0035972889
-
Sexual isolation in bacteria
-
Majewski J, (2001) Sexual isolation in bacteria. FEMS microbiology letters 199: 161-169.
-
(2001)
FEMS Microbiology Letters
, vol.199
, pp. 161-169
-
-
Majewski, J.1
-
56
-
-
33846625056
-
Recombination and the nature of bacterial speciation
-
Fraser C, Hanage W, Spratt B, (2007) Recombination and the nature of bacterial speciation. Science 315: 476-480.
-
(2007)
Science
, vol.315
, pp. 476-480
-
-
Fraser, C.1
Hanage, W.2
Spratt, B.3
-
57
-
-
0030968564
-
Barriers to recombination between closely related bacteria: MutS and RecBCD inhibit recombination between Salmonella typhimurium and Salmonella typhi
-
Zahrt TC, Maloy S, (1997) Barriers to recombination between closely related bacteria: MutS and RecBCD inhibit recombination between Salmonella typhimurium and Salmonella typhi. Proc Natl Acad Sci U S A 94: 9786-9791.
-
(1997)
Proc Natl Acad Sci U S A
, vol.94
, pp. 9786-9791
-
-
Zahrt, T.C.1
Maloy, S.2
-
58
-
-
13244262785
-
Nomenclature and taxonomy of the genus Salmonella
-
Tindall BJ, Grimont PA, Garrity GM, Euzéby JP, (2005) Nomenclature and taxonomy of the genus Salmonella. Int J Syst Evol Microbiol 55: 521-524.
-
(2005)
Int J Syst Evol Microbiol
, vol.55
, pp. 521-524
-
-
Tindall, B.J.1
Grimont, P.A.2
Garrity, G.M.3
Euzéby, J.P.4
-
59
-
-
33644817253
-
Recent changes in Salmonella nomenclature: the need for clarification
-
Heyndrickx M, Pasmans F, Ducatelle R, Decostere A, Haesebrouck F, (2005) Recent changes in Salmonella nomenclature: the need for clarification. Vet J 170: 275277.
-
(2005)
Vet J
, vol.170
, pp. 275277
-
-
Heyndrickx, M.1
Pasmans, F.2
Ducatelle, R.3
Decostere, A.4
Haesebrouck, F.5
-
60
-
-
0015839829
-
Molecular relationships among the Salmonellae
-
Crosa J, Brenner D, Ewing W, Falkow S, (1973) Molecular relationships among the Salmonellae. J Bacteriol 115: 307315.
-
(1973)
J Bacteriol
, vol.115
, pp. 307315
-
-
Crosa, J.1
Brenner, D.2
Ewing, W.3
Falkow, S.4
-
61
-
-
43849089834
-
Microbial diversity and the genetic nature of microbial species
-
Achtman M, Wagner M, (2008) Microbial diversity and the genetic nature of microbial species. Nature Reviews Microbiology 6: 431-440.
-
(2008)
Nature Reviews Microbiology
, vol.6
, pp. 431-440
-
-
Achtman, M.1
Wagner, M.2
-
62
-
-
59849086092
-
The bacterial species challenge: making sense of genetic and ecological diversity
-
Fraser C, Alm EJ, Polz MF, Spratt BG, Hanage WP, (2009) The bacterial species challenge: making sense of genetic and ecological diversity. Science 323: 741-746.
-
(2009)
Science
, vol.323
, pp. 741-746
-
-
Fraser, C.1
Alm, E.J.2
Polz, M.F.3
Spratt, B.G.4
Hanage, W.P.5
-
63
-
-
33751249041
-
Modelling bacterial speciation
-
Hanage WP, Spratt BG, Turner KME, Fraser C, (2006) Modelling bacterial speciation. Phil Trans R Soc B 361: 2039-44.
-
(2006)
Phil Trans R Soc B
, vol.361
, pp. 2039-2044
-
-
Hanage, W.P.1
Spratt, B.G.2
Turner, K.M.E.3
Fraser, C.4
-
64
-
-
42049090179
-
Convergence of Campylobacter Species: Implications for Bacterial Evolution
-
Sheppard S, McCarthy N, Falush D, Maiden M, (2008) Convergence of Campylobacter Species: Implications for Bacterial Evolution. Science 320: 237-239.
-
(2008)
Science
, vol.320
, pp. 237-239
-
-
Sheppard, S.1
McCarthy, N.2
Falush, D.3
Maiden, M.4
-
65
-
-
0035527404
-
Bacterial species and speciation
-
Cohan FM, (2001) Bacterial species and speciation. Systematic biology 50: 513-24.
-
(2001)
Systematic Biology
, vol.50
, pp. 513-524
-
-
Cohan, F.M.1
-
66
-
-
34247884459
-
A systematics for discovering the fundamental units of bacterial diversity
-
Cohan FM, Perry EB, (2007) A systematics for discovering the fundamental units of bacterial diversity. Curr Biol 17: 373-386.
-
(2007)
Curr Biol
, vol.17
, pp. 373-386
-
-
Cohan, F.M.1
Perry, E.B.2
-
67
-
-
33646242739
-
Isolation and characterization of bacteriophages infecting salmonella spp
-
Carey-Smith GV, Billington C, Cornelius AJ, Hudson JA, Heinemann JA, (2006) Isolation and characterization of bacteriophages infecting salmonella spp. FEMS Microbiol Lett 258: 182-186.
-
(2006)
FEMS Microbiol Lett
, vol.258
, pp. 182-186
-
-
Carey-Smith, G.V.1
Billington, C.2
Cornelius, A.J.3
Hudson, J.A.4
Heinemann, J.A.5
-
68
-
-
0033006479
-
Specific hypotheses on the geographic mosaic of coevolution
-
American Naturalist
-
Thompson J, (1999) Specific hypotheses on the geographic mosaic of coevolution. American Naturalist pp. 1-14.
-
(1999)
, pp. 1-14
-
-
Thompson, J.1
-
69
-
-
27644453358
-
The geographic mosaic of coevolution
-
University of Chicago Press
-
Thompson J, (2005) The geographic mosaic of coevolution. University of Chicago Press.
-
(2005)
-
-
Thompson, J.1
-
70
-
-
0037028084
-
The role of parasites in sympatric and allopatric host diversification
-
Buckling A, Rainey PB, (2002) The role of parasites in sympatric and allopatric host diversification. Nature 420: 496-499.
-
(2002)
Nature
, vol.420
, pp. 496-499
-
-
Buckling, A.1
Rainey, P.B.2
-
71
-
-
34247644804
-
Dos and don'ts of testing the geographic mosaic theory of coevolution
-
Gomulkiewicz R, Drown DM, Dybdahl MF, Godsoe W, Nuismer SL, et al. (2007) Dos and don'ts of testing the geographic mosaic theory of coevolution. Heredity 98: 249-258.
-
(2007)
Heredity
, vol.98
, pp. 249-258
-
-
Gomulkiewicz, R.1
Drown, D.M.2
Dybdahl, M.F.3
Godsoe, W.4
Nuismer, S.L.5
-
72
-
-
0037423837
-
Traces of human migrations in Helicobacter pylori populations
-
Falush D, Wirth T, Linz B, Pritchard JK, Stephens M, et al. (2003) Traces of human migrations in Helicobacter pylori populations. Science 299: 1582-1585.
-
(2003)
Science
, vol.299
, pp. 1582-1585
-
-
Falush, D.1
Wirth, T.2
Linz, B.3
Pritchard, J.K.4
Stephens, M.5
-
73
-
-
78649470145
-
Yersinia pestis genome sequencing identifies patterns of global phylogenetic diversity
-
Morelli G, Song Y, Mazzoni CJ, Eppinger M, Roumagnac P, et al. (2010) Yersinia pestis genome sequencing identifies patterns of global phylogenetic diversity. Nat Genet 42: 1140-1143.
-
(2010)
Nat Genet
, vol.42
, pp. 1140-1143
-
-
Morelli, G.1
Song, Y.2
Mazzoni, C.J.3
Eppinger, M.4
Roumagnac, P.5
-
74
-
-
0026029477
-
Reference collection of strains of the Salmonella typhimurium complex from natural populations
-
Beltran P, Plock SA, Smith NH, Whittam TS, Old DC, et al. (1991) Reference collection of strains of the Salmonella typhimurium complex from natural populations. J Gen Microbiol 137: 601-606.
-
(1991)
J Gen Microbiol
, vol.137
, pp. 601-606
-
-
Beltran, P.1
Plock, S.A.2
Smith, N.H.3
Whittam, T.S.4
Old, D.C.5
-
75
-
-
0027214445
-
Salmonella reference collection B (SARB): strains of 37 serovars of subspecies I
-
Boyd EF, Wang FS, Beltran P, Plock SA, Nelson K, et al. (1993) Salmonella reference collection B (SARB): strains of 37 serovars of subspecies I. J Gen Microbiol 139: 1125-1132.
-
(1993)
J Gen Microbiol
, vol.139
, pp. 1125-1132
-
-
Boyd, E.F.1
Wang, F.S.2
Beltran, P.3
Plock, S.A.4
Nelson, K.5
-
76
-
-
3543051830
-
Mauve: multiple alignment of conserved genomic sequence with rearrangements
-
Darling AC, Mau B, Blattner FR, Perna NT, (2004) Mauve: multiple alignment of conserved genomic sequence with rearrangements. Genome Res 14: 1394-1403.
-
(2004)
Genome Res
, vol.14
, pp. 1394-1403
-
-
Darling, A.C.1
Mau, B.2
Blattner, F.R.3
Perna, N.T.4
-
77
-
-
77956193448
-
ProgressiveMauve: Multiple Genome Alignment with Gene Gain, Loss and Rearrangement
-
doi:10.1371/journal.pone.0011147
-
Darling A, Mau B, Perna N, (2010) progressiveMauve: Multiple Genome Alignment with Gene Gain, Loss and Rearrangement. PLoS ONE 5: e11147 doi:10.1371/journal.pone.0011147.
-
(2010)
PLoS ONE
, vol.5
-
-
Darling, A.1
Mau, B.2
Perna, N.3
-
78
-
-
53549102749
-
Comparative genome analysis of Salmonella Enteritidis PT4 and Salmonella Gallinarum 287/91 provides insights into evolutionary and host adaptation pathways
-
Thomson NR, Clayton DJ, Windhorst D, Vernikos G, Davidson S, et al. (2008) Comparative genome analysis of Salmonella Enteritidis PT4 and Salmonella Gallinarum 287/91 provides insights into evolutionary and host adaptation pathways. Genome Res 18: 1624-1637.
-
(2008)
Genome Res
, vol.18
, pp. 1624-1637
-
-
Thomson, N.R.1
Clayton, D.J.2
Windhorst, D.3
Vernikos, G.4
Davidson, S.5
-
79
-
-
0242596256
-
Documentation for structure software: Version 2.3
-
Pritchard JK, Wena X, Falush D, (2009) Documentation for structure software: Version 2.3, http://pritch.bsd.uchicago.edu/structure.html.
-
(2009)
-
-
Pritchard, J.K.1
Wena, X.2
Falush, D.3
-
80
-
-
21244479740
-
Detecting the number of clusters of individuals using the software structure: a simulation study
-
Evanno G, Regnaut S, Goudet J, (2005) Detecting the number of clusters of individuals using the software structure: a simulation study. Mol Ecol 14: 2611-2620.
-
(2005)
Mol Ecol
, vol.14
, pp. 2611-2620
-
-
Evanno, G.1
Regnaut, S.2
Goudet, J.3
-
81
-
-
84972492387
-
Inference from iterative simulation using multiple sequences
-
Gelman A, Rubin DB, (1992) Inference from iterative simulation using multiple sequences. Statistical Science 7: 457-511.
-
(1992)
Statistical Science
, vol.7
, pp. 457-511
-
-
Gelman, A.1
Rubin, D.B.2
-
82
-
-
58049208278
-
DNAPlotter: circular and linear interactive genome visualization
-
Carver T, Thomson N, Bleasby A, Berriman M, Parkhill J, (2009) DNAPlotter: circular and linear interactive genome visualization. Bioinformatics 25: 119-120.
-
(2009)
Bioinformatics
, vol.25
, pp. 119-120
-
-
Carver, T.1
Thomson, N.2
Bleasby, A.3
Berriman, M.4
Parkhill, J.5
-
83
-
-
79952134006
-
FigTree, a graphical viewer of phylogenetic trees
-
Available from
-
Rambaut A, (2008) FigTree, a graphical viewer of phylogenetic trees, Available fromhttp://tree.bio.ed.ac.uk/software/figtree/.
-
(2008)
-
-
Rambaut, A.1
-
84
-
-
0034274870
-
An open graph visualization system and its applications to software engineering
-
Gansner ER, North SC, (2000) An open graph visualization system and its applications to software engineering. Software - Practice and Experience 30: 1203-1233.
-
(2000)
Software - Practice and Experience
, vol.30
, pp. 1203-1233
-
-
Gansner, E.R.1
North, S.C.2
|