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Volumn 18, Issue 4, 2013, Pages

From molecular to genomic epidemiology: Transforming surveillance and control of infectious diseases

Author keywords

[No Author keywords available]

Indexed keywords

DISEASE SURVEILLANCE; DISEASE TRANSMISSION; EDITORIAL; GENOME ANALYSIS; GENOTYPE; HEALTH CARE POLICY; HIGH THROUGHPUT SEQUENCING; HUMAN; INFECTION CONTROL; MOLECULAR TYPING; MULTILOCUS VARIABLE NUMBER TANDEM REPEAT ANALYSIS; PUBLIC HEALTH PROBLEM; PUBLIC HEALTH SERVICE; WHOLE GENOME SEQUENCING;

EID: 84873847270     PISSN: 1025496X     EISSN: 15607917     Source Type: Journal    
DOI: 10.2807/ese.18.04.20386-en     Document Type: Editorial
Times cited : (47)

References (24)
  • 1
    • 0032130471 scopus 로고    scopus 로고
    • Comparative and library epidemiological typing systems: Outbreak investigations versus surveillance systems
    • Struelens MJ, De Gheldre Y, Deplano A. Comparative and library epidemiological typing systems: outbreak investigations versus surveillance systems. Infect Control Hosp Epidemiol. 1998;19(8):565-9.
    • (1998) Infect Control Hosp Epidemiol , vol.19 , Issue.8 , pp. 565-569
    • Struelens, M.J.1    de Gheldre, Y.2    Deplano, A.3
  • 2
    • 34548246397 scopus 로고    scopus 로고
    • Guidelines for the validation and application of typing methods for use in bacterial epidemiology
    • van Belkum A, Tassios PT, Dijkshoorn L, Haeggman S, Cookson B, Fry NK, et al. Guidelines for the validation and application of typing methods for use in bacterial epidemiology. Clin Microbiol Infect. 2007;13 Suppl 3:1-46.
    • (2007) Clin Microbiol Infect , vol.13 , Issue.SUPPL 3 , pp. 1-46
    • van Belkum, A.1    Tassios, P.T.2    Dijkshoorn, L.3    Haeggman, S.4    Cookson, B.5    Fry, N.K.6
  • 3
    • 84873871282 scopus 로고    scopus 로고
    • From Theory to Practice: Molecular Strain Typing for the Clinical and Public Health Setting
    • on behalf of the ESCMID Study Group for Epidemiological Markers (ESGEM), pii=20383. Available online
    • Goering RV, Köck R, Grundmann H, Werner G, Friedrich AW, on behalf of the ESCMID Study Group for Epidemiological Markers (ESGEM). From Theory to Practice: Molecular Strain Typing for the Clinical and Public Health Setting. Euro Surveill. 2013;18(4):pii=20383. Available online:http://www.eurosurveillance.org/ViewArticle.aspx?ArticleId=20383
    • (2013) Euro Surveill , vol.18 , Issue.4
    • Goering, R.V.1    Köck, R.2    Grundmann, H.3    Werner, G.4    Friedrich, A.W.5
  • 4
    • 84873808580 scopus 로고    scopus 로고
    • Molecular-based surveillance of campylobacteriosis in New Zealand-from source attribution to genomic epidemiology
    • pii=20365. Available from
    • Muellner P, Pleydell E, Pirie R, Baker MG, Campbell D, Carter PE, et al. Molecular-based surveillance of campylobacteriosis in New Zealand-from source attribution to genomic epidemiology. Euro Surveill. 2013;18(3):pii=20365. Available from: http://www.eurosurveillance.org/ViewArticle.aspx?ArticleId=20365
    • (2013) Euro Surveill , vol.18 , Issue.3
    • Muellner, P.1    Pleydell, E.2    Pirie, R.3    Baker, M.G.4    Campbell, D.5    Carter, P.E.6
  • 5
    • 84873874372 scopus 로고    scopus 로고
    • Overview of molecular typing methods for outbreak detection and epidemiological surveillance
    • on behalf of the ESCMID Study Group of Epidemiological Markers (ESGEM), pii=20380. Available online
    • Sabat AJ, Budimir A, Nashev D, Sá-Leão R, van Dijl JM, Laurent F, Grundmann H, Friedrich AW, on behalf of the ESCMID Study Group of Epidemiological Markers (ESGEM). Overview of molecular typing methods for outbreak detection and epidemiological surveillance. Euro Surveill. 2013;18(4):pii=20380. Available online:http://www.eurosurveillance.org/ViewArticle.aspx?ArticleId=20380
    • (2013) Euro Surveill , vol.18 , Issue.4
    • Sabat, A.J.1    Budimir, A.2    Nashev, D.3    Sá-Leão, R.4    van Dijl, J.M.5    Laurent, F.6    Grundmann, H.7    Friedrich, A.W.8
  • 7
    • 33645721090 scopus 로고    scopus 로고
    • Building PulseNet International: An interconnected system of laboratory networks to facilitate timely public health recognition and response to foodborne disease outbreaks and emerging foodborne diseases
    • Swaminathan B, Gerner-Smidt P, Ng LK, Lukinmaa S, Kam KM, Rolando S, et al. Building PulseNet International: an interconnected system of laboratory networks to facilitate timely public health recognition and response to foodborne disease outbreaks and emerging foodborne diseases. Foodborne Pathog Dis. 2006;3(1):36-50.
    • (2006) Foodborne Pathog Dis , vol.3 , Issue.1 , pp. 36-50
    • Swaminathan, B.1    Gerner-Smidt, P.2    Ng, L.K.3    Lukinmaa, S.4    Kam, K.M.5    Rolando, S.6
  • 8
    • 84873883284 scopus 로고    scopus 로고
    • A snapshot of genetic lineages of Mycobacterium tuberculosis in Ireland over a two-year period, 2010 and 2011
    • pii=20367. Available from
    • Fitzgibbon MM, Gibbons N, Roycroft E, Jackson S, O'Donnell J, O'Flanagan D, et al. A snapshot of genetic lineages of Mycobacterium tuberculosis in Ireland over a two-year period, 2010 and 2011. Euro Surveill. 2013;18(3):pii=20367. Available from: http://www.eurosurveillance.org/ViewArticle.aspx?ArticleId=20367
    • (2013) Euro Surveill , vol.18 , Issue.3
    • Fitzgibbon, M.M.1    Gibbons, N.2    Roycroft, E.3    Jackson, S.4    O'Donnell, J.5    O'Flanagan, D.6
  • 9
    • 84873453136 scopus 로고    scopus 로고
    • Molecular epidemiological typing within the European Gonococcal Antimicrobial Resistance Surveillance Programme reveals predominance of a multidrug-resistant clone
    • pii=20358. Available from
    • Chisholm SA, Unemo M, Quaye N, Johansson E, Cole MJ, Ison CA, et al. Molecular epidemiological typing within the European Gonococcal Antimicrobial Resistance Surveillance Programme reveals predominance of a multidrug-resistant clone. Euro Surveill. 2013;18(3):pii=20358. Available from:http://www.eurosurveillance.org/ViewArticle.aspx?ArticleId=20358
    • (2013) Euro Surveill , vol.18 , Issue.3
    • Chisholm, S.A.1    Unemo, M.2    Quaye, N.3    Johansson, E.4    Cole, M.J.5    Ison, C.A.6
  • 10
    • 84873826425 scopus 로고    scopus 로고
    • Bioinformatics in bacterial molecular epidemiology and public health: Databases, tools and the next-generation sequencing revolution
    • on behalf of the ESCMID Study Group for Epidemiological Markers (ESGEM), pii=20382. Available online
    • Carriço JA, Sabat AJ, Friedrich AW, Ramirez M, on behalf of the ESCMID Study Group for Epidemiological Markers (ESGEM). Bioinformatics in bacterial molecular epidemiology and public health: databases, tools and the next-generation sequencing revolution. Euro Surveill. 2013;18(4):pii=20382. Available online:http://www.eurosurveillance.org/ViewArticle.aspx?ArticleId=20382
    • (2013) Euro Surveill , vol.18 , Issue.4
    • Carriço, J.A.1    Sabat, A.J.2    Friedrich, A.W.3    Ramirez, M.4
  • 12
    • 84873822504 scopus 로고    scopus 로고
    • Automated extraction of typing information for bacterial pathogens from whole genome sequence data: Neisseria meningitidis as an exemplar
    • pii=20379. Available online
    • Jolley KA, Maiden MC. Automated extraction of typing information for bacterial pathogens from whole genome sequence data: Neisseria meningitidis as an exemplar. Euro Surveill. 2013;18(4):pii=20379. Available online:http://www.eurosurveillance.org/ViewArticle.aspx?ArticleId=20379
    • (2013) Euro Surveill , vol.18 , Issue.4
    • Jolley, K.A.1    Maiden, M.C.2
  • 13
    • 84864059917 scopus 로고    scopus 로고
    • Multilocus sequence typing as a replacement for serotyping in Salmonella enterica
    • Achtman M, Wain J, Weill FX, Nair S, Zhou Z, Sangal V, et al. Multilocus sequence typing as a replacement for serotyping in Salmonella enterica. PLoS Pathog. 2012;8(6):e1002776.
    • (2012) PLoS Pathog , vol.8 , Issue.6
    • Achtman, M.1    Wain, J.2    Weill, F.X.3    Nair, S.4    Zhou, Z.5    Sangal, V.6
  • 14
    • 84873808423 scopus 로고    scopus 로고
    • Current application and future perspectives of molecular typing methods to study Clostridium difficile infections
    • pii=20381. Available online
    • Knetsch CW, Lawley TD, Hensgens MP, Corver J, Wilcox MW, Kuijper EJ. Current application and future perspectives of molecular typing methods to study Clostridium difficile infections. Euro Surveill. 2013;18(4):pii=20381. Available online: http://www.eurosurveillance.org/ViewArticle.aspx?ArticleId=20381
    • (2013) Euro Surveill , vol.18 , Issue.4
    • Knetsch, C.W.1    Lawley, T.D.2    Hensgens, M.P.3    Corver, J.4    Wilcox, M.W.5    Kuijper, E.J.6
  • 15
    • 84871990888 scopus 로고    scopus 로고
    • Emergence and global spread of epidemic healthcare-associated Clostridium difficile
    • He M, Miyajima F, Roberts P, Ellison L, Pickard DJ, Martin MJ, et al. Emergence and global spread of epidemic healthcare-associated Clostridium difficile. Nat Genet. 2012;45(1):109-13.
    • (2012) Nat Genet , vol.45 , Issue.1 , pp. 109-113
    • He, M.1    Miyajima, F.2    Roberts, P.3    Ellison, L.4    Pickard, D.J.5    Martin, M.J.6
  • 16
    • 84873828756 scopus 로고    scopus 로고
    • Within-patient emergence of the influenza A(H1N1)pdm09 HA1 222G variant and clear association with severe disease, Norway
    • pii=20369. Available from
    • Rykkvin R, Kilander A, Dudman SG, Hungnes O. Within-patient emergence of the influenza A(H1N1)pdm09 HA1 222G variant and clear association with severe disease, Norway. Euro Surveill. 2013;18(3):pii=20369. Available from: http://www.eurosurveillance.org/ViewArticle.aspx?ArticleId=20369
    • (2013) Euro Surveill , vol.18 , Issue.3
    • Rykkvin, R.1    Kilander, A.2    Dudman, S.G.3    Hungnes, O.4
  • 17
    • 0346373759 scopus 로고    scopus 로고
    • Unifying the epidemiological and evolutionary dynamics of pathogens
    • Grenfell BT, Pybus OG, Gog JR, Wood JL, Daly JM, Mumford JA, et al. Unifying the epidemiological and evolutionary dynamics of pathogens. Science. 2004;303(5656):327-32.
    • (2004) Science , vol.303 , Issue.5656 , pp. 327-332
    • Grenfell, B.T.1    Pybus, O.G.2    Gog, J.R.3    Wood, J.L.4    Daly, J.M.5    Mumford, J.A.6
  • 19
    • 84866902363 scopus 로고    scopus 로고
    • Short read sequence typing (SRST): Multi-locus sequence types from short reads
    • Inouye M, Conway TC, Zobel J, Holt KE. Short read sequence typing (SRST): multi-locus sequence types from short reads. BMC Genomics. 2012;13:338.
    • (2012) BMC Genomics , vol.13 , pp. 338
    • Inouye, M.1    Conway, T.C.2    Zobel, J.3    Holt, K.E.4
  • 21
    • 84873861059 scopus 로고    scopus 로고
    • The need for ethical reflection on the use of molecular microbial characterisation in outbreak management
    • pii=20384. Available online
    • Rump B, Cornelis C, Woonink F, Verweij M. The need for ethical reflection on the use of molecular microbial characterisation in outbreak management. Euro Surveill. 2013;18(4):pii=20384. Available online:http://www.eurosurveillance.org/ViewArticle.aspx?ArticleId=20384
    • (2013) Euro Surveill , vol.18 , Issue.4
    • Rump, B.1    Cornelis, C.2    Woonink, F.3    Verweij, M.4
  • 22
    • 84855990672 scopus 로고    scopus 로고
    • Molecular epidemiology of human pathogens: How to translate breakthroughs into public health practice, Stockholm, November 2011
    • pii=20054. Available from
    • Palm D, Johansson K, Ozin A, Friedrich AW, Grundmann H, Larsson JT, et al. Molecular epidemiology of human pathogens: how to translate breakthroughs into public health practice, Stockholm, November 2011. Euro Surveill. 2012;17(2):pii=20054. Available from: http://www.eurosurveillance.org/ViewArticle.aspx?ArticleId=20054
    • (2012) Euro Surveill , vol.17 , Issue.2
    • Palm, D.1    Johansson, K.2    Ozin, A.3    Friedrich, A.W.4    Grundmann, H.5    Larsson, J.T.6
  • 23
    • 84873823908 scopus 로고    scopus 로고
    • ECDC starts pilot phase for collection of molecular typing data
    • pii=20357. Available from
    • van Walle I. ECDC starts pilot phase for collection of molecular typing data. Euro Surveill. 2013;18(3):pii=20357. Available from: http://www.eurosurveillance.org/ViewArticle.aspx?ArticleId=20357
    • (2013) Euro Surveill , vol.18 , Issue.3
    • van Walle, I.1
  • 24
    • 84873809749 scopus 로고    scopus 로고
    • Integrating genome-based informatics to modernize global disease monitoring, information sharing, and response
    • Aarestrup FM, Brown EW, Detter C, Gerner-Smidt P, Gilmour MW, Harmsen D, et al. Integrating genome-based informatics to modernize global disease monitoring, information sharing, and response. Emerg Infect Dis. 2012;18(11):e1
    • (2012) Emerg Infect Dis , vol.18 , Issue.11
    • Aarestrup, F.M.1    Brown, E.W.2    Detter, C.3    Gerner-Smidt, P.4    Gilmour, M.W.5    Harmsen, D.6


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