-
1
-
-
0023916658
-
Sequences, sequences, and sequences
-
Sanger, F. Sequences, sequences, and sequences. Annu. Rev. Biochem. 57, 1-28 (1988).
-
(1988)
Annu. Rev. Biochem.
, vol.57
, pp. 1-28
-
-
Sanger, F.1
-
3
-
-
0001433809
-
Method for determination of the amino acid sequence in peptides
-
Edman, P. Method for determination of the amino acid sequence in peptides. Acta Chem. Scand. 4, 283-293 (1950).
-
(1950)
Acta Chem. Scand.
, vol.4
, pp. 283-293
-
-
Edman, P.1
-
4
-
-
0001195354
-
Structure of a ribonucleic acid
-
Holley, R. W. et al. Structure of a ribonucleic acid. Science 147, 1462-1465 (1965).
-
(1965)
Science
, vol.147
, pp. 1462-1465
-
-
Holley, R.W.1
-
5
-
-
85010251988
-
A two-dimensional fractionation procedure for radioactive nucleotides
-
Sanger, F., Brownlee, G. G. & Barrell, B. G. A two-dimensional fractionation procedure for radioactive nucleotides. J. Mol. Biol. 13, 373-398 (1965).
-
(1965)
J. Mol. Biol.
, vol.13
, pp. 373-398
-
-
Sanger, F.1
Brownlee, G.G.2
Barrell, B.G.3
-
6
-
-
0014413943
-
Structure and base sequence in the cohesive ends of bacteriophage lambda DNA
-
Wu, R. & Kaiser, A. D. Structure and base sequence in the cohesive ends of bacteriophage lambda DNA. J. Mol. Biol. 35, 523-537 (1968).
-
(1968)
J. Mol. Biol.
, vol.35
, pp. 523-537
-
-
Wu, R.1
Kaiser, A.D.2
-
7
-
-
0015757986
-
The nucleotide sequence of the lac operator
-
Gilbert, W. & Maxam, A. The nucleotide sequence of the lac operator. Proc. Natl Acad. Sci. USA 70, 3581-3584 (1973).
-
(1973)
Proc. Natl Acad. Sci. USA
, vol.70
, pp. 3581-3584
-
-
Gilbert, W.1
Maxam, A.2
-
8
-
-
0017681196
-
DNA sequencing with chain-terminating inhibitors
-
Sanger, F., Nicklen, S. & Coulson, A. R. DNA sequencing with chain-terminating inhibitors. Proc. Natl Acad. Sci. USA 74, 5463-5467 (1977).
-
(1977)
Proc. Natl Acad. Sci. USA
, vol.74
, pp. 5463-5467
-
-
Sanger, F.1
Nicklen, S.2
Coulson, A.R.3
-
10
-
-
0016720497
-
Chain length determination of small double-and single-stranded DNA molecules by polyacrylamide gel electrophoresis
-
Maniatis, T., Jeffrey, A. & van deSande, H. Chain length determination of small double-and single-stranded DNA molecules by polyacrylamide gel electrophoresis. Biochemistry 14, 3787-3794 (1975).
-
(1975)
Biochemistry
, vol.14
, pp. 3787-3794
-
-
Maniatis, T.1
Jeffrey, A.2
Van DeSande, H.3
-
11
-
-
0018426987
-
A strategy of DNA sequencing employing computer programs
-
Staden, R. A strategy of DNA sequencing employing computer programs. Nucleic Acids Res. 6, 2601-2610 (1979).
-
(1979)
Nucleic Acids Res.
, vol.6
, pp. 2601-2610
-
-
Staden, R.1
-
12
-
-
0019887220
-
A system for shotgun DNA sequencing
-
Messing, J., Crea, R. & Seeburg, P. H. A system for shotgun DNA sequencing. Nucleic Acids Res. 9, 309-321 (1981).
-
(1981)
Nucleic Acids Res
, vol.9
, pp. 309-321
-
-
Messing, J.1
Crea, R.2
Seeburg, P.H.3
-
13
-
-
0020465927
-
Nucleotide sequence of bacteriophage lambda DNA
-
Sanger, F., Coulson, A. R., Hong, G. F., Hill, D. F. & Petersen, G. B. Nucleotide sequence of bacteriophage lambda DNA. J. Mol. Biol. 162, 729-773 (1982).
-
(1982)
J. Mol. Biol.
, vol.162
, pp. 729-773
-
-
Sanger, F.1
Coulson, A.R.2
Hong, G.F.3
Hill, D.F.4
Petersen, G.B.5
-
14
-
-
0023047540
-
Fluorescence detection in automated DNA sequence analysis
-
Smith, L. M. et al. Fluorescence detection in automated DNA sequence analysis. Nature 321, 674-679 (1986).
-
(1986)
Nature
, vol.321
, pp. 674-679
-
-
Smith, L.M.1
-
15
-
-
0000832121
-
Automated DNA sequence analysis
-
Connell, C. et al. Automated DNA sequence analysis. Biotechniques 5, 342-348 (1987).
-
(1987)
Biotechniques
, vol.5
, pp. 342-348
-
-
Connell, C.1
-
16
-
-
0025183708
-
Basic local alignment search tool
-
Altschul, S. F., Gish, W., Miller, W., Myers, E. W. & Lipman, D. J. Basic local alignment search tool. J. Mol. Biol. 215, 403-410 (1990).
-
(1990)
J. Mol. Biol.
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
17
-
-
0023440258
-
A system for rapid DNA sequencing with fluorescent chain-terminating dideoxynucleotides
-
Prober, J. M. et al. A system for rapid DNA sequencing with fluorescent chain-terminating dideoxynucleotides. Science 238, 336-341 (1987).
-
(1987)
Science
, vol.238
, pp. 336-341
-
-
Prober, J.M.1
-
18
-
-
0023371227
-
DNA sequence analysis with a modified bacteriophage T7 DNA polymerase
-
Tabor, S. & Richardson, C. C. DNA sequence analysis with a modified bacteriophage T7 DNA polymerase. Proc. Natl Acad. Sci. USA 84, 4767-4771 (1987).
-
(1987)
Proc. Natl Acad. Sci. USA
, vol.84
, pp. 4767-4771
-
-
Tabor, S.1
Richardson, C.C.2
-
19
-
-
44949279715
-
Linear amplification sequencing, a powerful method for sequencing DNA
-
Craxton, M. Linear amplification sequencing, a powerful method for sequencing DNA. Methods 3, 20-26 (1991).
-
(1991)
Methods
, vol.3
, pp. 20-26
-
-
Craxton, M.1
-
20
-
-
0028820187
-
Solid-phase reversible immobilization for the isolation of PCR products
-
DeAngelis, M. M., Wang, D. G. & Hawkins, T. L. Solid-phase reversible immobilization for the isolation of PCR products. Nucleic Acids Res. 23, 4742-4743 (1995).
-
(1995)
Nucleic Acids Res.
, vol.23
, pp. 4742-4743
-
-
DeAngelis, M.M.1
Wang, D.G.2
Hawkins, T.L.3
-
21
-
-
0029645976
-
Use of non-cross-linked polyacrylamide for four-color DNA sequencing by capillary electrophoresis separation of fragments up to 640 bases in length in two hours
-
Zhang, J. et al. Use of non-cross-linked polyacrylamide for four-color DNA sequencing by capillary electrophoresis separation of fragments up to 640 bases in length in two hours. Anal. Chem. 67, 4589-4593 (1995).
-
(1995)
Anal. Chem.
, vol.67
, pp. 4589-4593
-
-
Zhang, J.1
-
23
-
-
0025283215
-
Automated DNA sequencing of the human HPRT locus
-
Edwards, A. et al. Automated DNA sequencing of the human HPRT locus. Genomics 6, 593-608 (1990).
-
(1990)
Genomics
, vol.6
, pp. 593-608
-
-
Edwards, A.1
-
24
-
-
0001899550
-
TIGR assembler: A new tool for assembling large shotgun sequencing projects
-
Sutton, G. G., White, O., Adams, M. D. & Kerlavage, A. R. TIGR assembler: a new tool for assembling large shotgun sequencing projects. Genome Sci. Technol. 1, 9-19 (1995).
-
(1995)
Genome Sci. Technol.
, vol.1
, pp. 9-19
-
-
Sutton, G.G.1
White, O.2
Adams, M.D.3
Kerlavage, A.R.4
-
25
-
-
0034708758
-
A whole-genome assembly of Drosophila
-
Myers, E. W. et al. A whole-genome assembly of Drosophila. Science 287, 2196-2204 (2000).
-
(2000)
Science
, vol.287
, pp. 2196-2204
-
-
Myers, E.W.1
-
26
-
-
0029653518
-
Whole-genome random sequencing and assembly of Haemophilus influenzae Rd
-
Fleischmann, R. D. et al. Whole-genome random sequencing and assembly of Haemophilus influenzae Rd. Science 269, 496-512 (1995).
-
(1995)
Science
, vol.269
, pp. 496-512
-
-
Fleischmann, R.D.1
-
27
-
-
10244239321
-
Life with 6000 genes
-
Goffeau, A. et al. Life with 6000 genes. Science 274, 546-567 (1996).
-
(1996)
Science
, vol.274
, pp. 546-567
-
-
Goffeau, A.1
-
28
-
-
0032509302
-
Genome sequence of the nematode C. Elegans: A platform for investigating biology
-
The C. elegans Sequencing Consortium
-
The C. elegans Sequencing Consortium. Genome sequence of the nematode C. elegans: a platform for investigating biology. Science 282, 2012-2018 (1998).
-
(1998)
Science
, vol.282
, pp. 2012-2018
-
-
-
29
-
-
2042437650
-
Initial sequencing and analysis of the human genome
-
International Human Genome Sequencing Consortium.
-
International Human Genome Sequencing Consortium. Initial sequencing and analysis of the human genome. Nature 409, 860-921 (2001).
-
(2001)
Nature
, vol.409
, pp. 860-921
-
-
-
30
-
-
7244245762
-
Finishing the euchromatic sequence of the human genome
-
International Human Genome Sequencing Consortium.
-
International Human Genome Sequencing Consortium. Finishing the euchromatic sequence of the human genome. Nature 431, 931-945 (2004).
-
(2004)
Nature
, vol.431
, pp. 931-945
-
-
-
31
-
-
0035895505
-
The sequence of the human genome
-
Venter, J. C. et al. The sequence of the human genome. Science 291, 1304-1351 (2001).
-
(2001)
Science
, vol.291
, pp. 1304-1351
-
-
Venter, J.C.1
-
32
-
-
0034708480
-
The genome sequence of Drosophila melanogaster
-
Adams, M. D. et al. The genome sequence of Drosophila melanogaster. Science 287, 2185-2195 (2000).
-
(2000)
Science
, vol.287
, pp. 2185-2195
-
-
Adams, M.D.1
-
34
-
-
0037388048
-
Sequence information can be obtained from single DNA molecules
-
Braslavsky, I., Hebert, B., Kartalov, E. & Quake, S. R. Sequence information can be obtained from single DNA molecules. Proc. Natl Acad. Sci. USA 100, 3960-3964 (2003).
-
(2003)
Proc. Natl Acad. Sci. USA
, vol.100
, pp. 3960-3964
-
-
Braslavsky, I.1
Hebert, B.2
Kartalov, E.3
Quake, S.R.4
-
35
-
-
41749104588
-
Single-molecule DNA sequencing of a viral genome
-
Harris, T. D. et al. Single-molecule DNA sequencing of a viral genome. Science 320, 106-109 (2008).
-
(2008)
Science
, vol.320
, pp. 106-109
-
-
Harris, T.D.1
-
38
-
-
0033573165
-
In situ localized amplification and contact replication of many individual DNA molecules
-
Mitra, R. D. & Church, G. M. In situ localized amplification and contact replication of many individual DNA molecules. Nucleic Acids Res. 27, e34-e39 (1999).
-
(1999)
Nucleic Acids Res.
, vol.27
, pp. e34-e39
-
-
Mitra, R.D.1
Church, G.M.2
-
39
-
-
0034667196
-
Solid phase DNA amplification: Characterisation of primer attachment and amplification mechanisms
-
Adessi, C. et al. Solid phase DNA amplification: characterisation of primer attachment and amplification mechanisms. Nucleic Acids Res. 28, e87 (2000).
-
(2000)
Nucleic Acids Res.
, vol.28
, pp. e87
-
-
Adessi, C.1
-
40
-
-
24044455869
-
Genome sequencing in microfabricated high-density picolitre reactors
-
Margulies, M. et al. Genome sequencing in microfabricated high-density picolitre reactors. Nature 437, 376-380 (2005).
-
(2005)
Nature
, vol.437
, pp. 376-380
-
-
Margulies, M.1
-
41
-
-
24644462173
-
Accurate multiplex polony sequencing of an evolved bacterial genome
-
Shendure, J. et al. Accurate multiplex polony sequencing of an evolved bacterial genome. Science 309, 1728-1732 (2005).
-
(2005)
Science
, vol.309
, pp. 1728-1732
-
-
Shendure, J.1
-
42
-
-
0042307371
-
Transforming single DNA molecules into fluorescent magnetic particles for detection and enumeration of genetic variations
-
Dressman, D., Yan, H., Traverso, G., Kinzler, K. W. & Vogelstein, B. Transforming single DNA molecules into fluorescent magnetic particles for detection and enumeration of genetic variations. Proc. Natl Acad. Sci. USA 100, 8817-8822 (2003).
-
(2003)
Proc. Natl Acad. Sci. USA
, vol.100
, pp. 8817-8822
-
-
Dressman, D.1
Yan, H.2
Traverso, G.3
Kinzler, K.W.4
Vogelstein, B.5
-
43
-
-
74949138753
-
Human genome sequencing using unchained base reads on self-assembling DNA nanoarrays
-
Drmanac, R. et al. Human genome sequencing using unchained base reads on self-assembling DNA nanoarrays. Science 327, 78-81 (2010).
-
(2010)
Science
, vol.327
, pp. 78-81
-
-
Drmanac, R.1
-
44
-
-
0030298490
-
Real-time DNA sequencing using detection of pyrophosphate release
-
Ronaghi, M., Karamohamed, S., Pettersson, B., Uhlén, M. & Nyrén, P. Real-time DNA sequencing using detection of pyrophosphate release. Anal. Biochem. 242, 84-89 (1996).
-
(1996)
Anal. Biochem.
, vol.242
, pp. 84-89
-
-
Ronaghi, M.1
Karamohamed, S.2
Pettersson, B.3
Uhlén, M.4
Nyrén, P.5
-
46
-
-
85031899846
-
-
Patent
-
Rothberg, J. M., Hinz, W., Johnson, K. L. & Bustillo, J. Apparatus for measuring analytes using large scale FET arrays. Patent EP2639579 (2016).
-
(2016)
Apparatus for Measuring Analytes Using Large Scale FET Arrays
-
-
Rothberg, J.M.1
Hinz, W.2
Johnson, K.L.3
Bustillo, J.4
-
47
-
-
0034130561
-
Gene expression analysis by massively parallel signature sequencing (MPSS) on microbead arrays
-
Brenner, S. et al. Gene expression analysis by massively parallel signature sequencing (MPSS) on microbead arrays. Nat. Biotechnol. 18, 630-634 (2000).
-
(2000)
Nat. Biotechnol.
, vol.18
, pp. 630-634
-
-
Brenner, S.1
-
48
-
-
69749090013
-
Sequence and structural variation in a human genome uncovered by short-read, massively parallel ligation sequencing using two-base encoding
-
McKernan, K. J. et al. Sequence and structural variation in a human genome uncovered by short-read, massively parallel ligation sequencing using two-base encoding. Genome Res. 19, 1527-1541 (2009).
-
(2009)
Genome Res.
, vol.19
, pp. 1527-1541
-
-
McKernan, K.J.1
-
49
-
-
0041695266
-
Fluorescent in situ sequencing on polymerase colonies
-
Mitra, R. D., Shendure, J., Olejnik, J., Edyta-Krzymanska-Olejnik, & Church, G. M. Fluorescent in situ sequencing on polymerase colonies. Anal. Biochem. 320, 55-65 (2003).
-
(2003)
Anal. Biochem.
, vol.320
, pp. 55-65
-
-
Mitra, R.D.1
Shendure, J.2
Olejnik, J.3
Edyta-Krzymanska-Olejnik4
Church, G.M.5
-
51
-
-
17844371339
-
Design and synthesis of a 3′-O-allyl photocleavable fluorescent nucleotide as a reversible terminator for DNA sequencing by synthesis
-
Ruparel, H. et al. Design and synthesis of a 3′-O-allyl photocleavable fluorescent nucleotide as a reversible terminator for DNA sequencing by synthesis. Proc. Natl Acad. Sci. USA 102, 5932-5937 (2005).
-
(2005)
Proc. Natl Acad. Sci. USA
, vol.102
, pp. 5932-5937
-
-
Ruparel, H.1
-
52
-
-
17844393848
-
Four-color DNA sequencing by synthesis on a chip using photocleavable fluorescent nucleotides
-
Seo, T. S. et al. Four-color DNA sequencing by synthesis on a chip using photocleavable fluorescent nucleotides. Proc. Natl Acad. Sci. USA 102, 5926-5931 (2005).
-
(2005)
Proc. Natl Acad. Sci. USA
, vol.102
, pp. 5926-5931
-
-
Seo, T.S.1
-
53
-
-
48249099869
-
-
Patent
-
Barnes, C., Balasubramanian, S., Liu, X., Swerdlow, H. & Milton, J. Labelled nucleotides. Patent US7057026 (2006).
-
(2006)
Labelled Nucleotides
-
-
Barnes, C.1
Balasubramanian, S.2
Liu, X.3
Swerdlow, H.4
Milton, J.5
-
54
-
-
85031916655
-
Cloned single molecule sequencing with reversible terminator chemistry
-
Smith, T. J. Cloned single molecule sequencing with reversible terminator chemistry. Genome Sequencing and Analysis Conference (2015).
-
(2015)
Genome Sequencing and Analysis Conference
-
-
Smith, T.J.1
-
55
-
-
55549089660
-
Accurate whole human genome sequencing using reversible terminator chemistry
-
Bentley, D. R. et al. Accurate whole human genome sequencing using reversible terminator chemistry. Nature 456, 53-59 (2008).
-
(2008)
Nature
, vol.456
, pp. 53-59
-
-
Bentley, D.R.1
-
57
-
-
0037474152
-
Zero-mode waveguides for single-molecule analysis at high concentrations
-
Levene, M. J. et al. Zero-mode waveguides for single-molecule analysis at high concentrations. Science 299, 682-686 (2003).
-
(2003)
Science
, vol.299
, pp. 682-686
-
-
Levene, M.J.1
-
58
-
-
58149234737
-
Real-time DNA sequencing from single polymerase molecules
-
Eid, J. et al. Real-time DNA sequencing from single polymerase molecules. Science 323, 133-138 (2009).
-
(2009)
Science
, vol.323
, pp. 133-138
-
-
Eid, J.1
-
59
-
-
84971280828
-
Three decades of nanopore sequencing
-
Deamer, D., Akeson, M. & Branton, D. Three decades of nanopore sequencing. Nat. Biotechnol. 34, 518-524 (2016).
-
(2016)
Nat. Biotechnol.
, vol.34
, pp. 518-524
-
-
Deamer, D.1
Akeson, M.2
Branton, D.3
-
60
-
-
84920506933
-
Nanopore sequencing: From imagination to reality
-
Bayley, H. Nanopore sequencing: from imagination to reality. Clin. Chem. 61, 25-31 (2015).
-
(2015)
Clin. Chem.
, vol.61
, pp. 25-31
-
-
Bayley, H.1
-
61
-
-
0007826742
-
-
Patent
-
Church, G., Deamer, D. W., Branton, D., Baldarelli, R. & Kasianowicz, J. Characterization of individual polymer molecules based on monomerinterface interactions. Patent US5795782 (1998).
-
(1998)
Characterization of Individual Polymer Molecules Based on Monomerinterface Interactions
-
-
Church, G.1
Deamer, D.W.2
Branton, D.3
Baldarelli, R.4
Kasianowicz, J.5
-
62
-
-
53649108801
-
The potential and challenges of nanopore sequencing
-
Branton, D. et al. The potential and challenges of nanopore sequencing. Nat. Biotechnol. 26, 1146-1153 (2008).
-
(2008)
Nat. Biotechnol.
, vol.26
, pp. 1146-1153
-
-
Branton, D.1
-
63
-
-
84905723571
-
Decoding long nanopore sequencing reads of natural DNA
-
Laszlo, A. H. et al. Decoding long nanopore sequencing reads of natural DNA. Nat. Biotechnol. 32, 829-833 (2014).
-
(2014)
Nat. Biotechnol.
, vol.32
, pp. 829-833
-
-
Laszlo, A.H.1
-
65
-
-
77952967431
-
Direct detection of DNA methylation during singlemolecule, real-time sequencing
-
Flusberg, B. A. et al. Direct detection of DNA methylation during singlemolecule, real-time sequencing. Nat. Methods 7, 461-465 (2010).
-
(2010)
Nat. Methods
, vol.7
, pp. 461-465
-
-
Flusberg, B.A.1
-
66
-
-
85029555861
-
-
Preprint at
-
Smith, A. M., Jain, M., Mulroney, L., Garalde, D. R. & Akeson, M. Reading canonical and modified nucleotides in 16S ribosomal RNA using nanopore direct RNA sequencing. Preprint at https://www.biorxiv.org/content/ early/2017/04/29/132274 (2017).
-
(2017)
Reading Canonical and Modified Nucleotides in 16S Ribosomal RNA Using Nanopore Direct RNA Sequencing
-
-
Smith, A.M.1
Jain, M.2
Mulroney, L.3
Garalde, D.R.4
Akeson, M.5
-
68
-
-
84875153533
-
Unfoldase-mediated protein translocation through an α-hemolysin nanopore
-
Nivala, J., Marks, D. B. & Akeson, M. Unfoldase-mediated protein translocation through an α-hemolysin nanopore. Nat. Biotechnol. 31, 247-250 (2013).
-
(2013)
Nat. Biotechnol.
, vol.31
, pp. 247-250
-
-
Nivala, J.1
Marks, D.B.2
Akeson, M.3
-
69
-
-
84902295162
-
Single-molecule spectroscopy of amino acids and peptides by recognition tunnelling
-
Zhao, Y. et al. Single-molecule spectroscopy of amino acids and peptides by recognition tunnelling. Nat. Nanotechnol. 9, 466-473 (2014).
-
(2014)
Nat. Nanotechnol.
, vol.9
, pp. 466-473
-
-
Zhao, Y.1
-
70
-
-
84977117574
-
Graphene nanopores for protein sequencing
-
Wilson, J., Sloman, L., He, Z. & Aksimentiev, A. Graphene nanopores for protein sequencing. Adv. Funct. Mater. 26, 4830-4838 (2016).
-
(2016)
Adv. Funct. Mater.
, vol.26
, pp. 4830-4838
-
-
Wilson, J.1
Sloman, L.2
He, Z.3
Aksimentiev, A.4
-
71
-
-
84957868063
-
Decoding DNA, RNA and peptides with quantum tunnelling
-
Di Ventra, M. & Taniguchi, M. Decoding DNA, RNA and peptides with quantum tunnelling. Nat. Nanotechnol. 11, 117-126 (2016).
-
(2016)
Nat. Nanotechnol.
, vol.11
, pp. 117-126
-
-
Di Ventra, M.1
Taniguchi, M.2
-
72
-
-
0017367852
-
Nucleotide sequence of bacteriophage phi X174 DNA
-
Sanger, F. et al. Nucleotide sequence of bacteriophage phi X174 DNA. Nature 265, 687-695 (1977).
-
(1977)
Nature
, vol.265
, pp. 687-695
-
-
Sanger, F.1
-
73
-
-
85019127944
-
Evaluation of GRCh38 and de novo haploid genome assemblies demonstrates the enduring quality of the reference assembly
-
Schneider, V. A. et al. Evaluation of GRCh38 and de novo haploid genome assemblies demonstrates the enduring quality of the reference assembly. Genome Res. 27, 849-864 (2017).
-
(2017)
Genome Res.
, vol.27
, pp. 849-864
-
-
Schneider, V.A.1
-
74
-
-
0035859921
-
An Eulerian path approach to DNA fragment assembly
-
Pevzner, P. A., Tang, H. & Waterman, M. S. An Eulerian path approach to DNA fragment assembly. Proc. Natl Acad. Sci. USA 98, 9748-9753 (2001).
-
(2001)
Proc. Natl Acad. Sci. USA
, vol.98
, pp. 9748-9753
-
-
Pevzner, P.A.1
Tang, H.2
Waterman, M.S.3
-
75
-
-
43149115851
-
Velvet: Algorithms for de novo short read assembly using de Bruijn graphs
-
Zerbino, D. R. & Birney, E. Velvet: algorithms for de novo short read assembly using de Bruijn graphs. Genome Res. 18, 821-829 (2008).
-
(2008)
Genome Res.
, vol.18
, pp. 821-829
-
-
Zerbino, D.R.1
Birney, E.2
-
76
-
-
84913548467
-
In vitro, long-range sequence information for de novo genome assembly via transposase contiguity
-
Adey, A. et al. In vitro, long-range sequence information for de novo genome assembly via transposase contiguity. Genome Res. 24, 2041-2049 (2014).
-
(2014)
Genome Res.
, vol.24
, pp. 2041-2049
-
-
Adey, A.1
-
77
-
-
84966549638
-
A hybrid approach for de novo human genome sequence assembly and phasing
-
Mostovoy, Y. et al. A hybrid approach for de novo human genome sequence assembly and phasing. Nat. Methods 13, 587-590 (2016).
-
(2016)
Nat. Methods
, vol.13
, pp. 587-590
-
-
Mostovoy, Y.1
-
78
-
-
84890034912
-
Chromosome-scale scaffolding of de novo genome assemblies based on chromatin interactions
-
Burton, J. N. et al. Chromosome-scale scaffolding of de novo genome assemblies based on chromatin interactions. Nat. Biotechnol. 31, 1119-1125 (2013).
-
(2013)
Nat. Biotechnol.
, vol.31
, pp. 1119-1125
-
-
Burton, J.N.1
-
79
-
-
84890032321
-
High-throughput genome scaffolding from in vivo DNA interaction frequency
-
Kaplan, N. & Dekker, J. High-throughput genome scaffolding from in vivo DNA interaction frequency. Nat. Biotechnol. 31, 1143-1147 (2013).
-
(2013)
Nat. Biotechnol.
, vol.31
, pp. 1143-1147
-
-
Kaplan, N.1
Dekker, J.2
-
80
-
-
85014528210
-
Single-molecule sequencing and chromatin conformation capture enable de novo reference assembly of the domestic goat genome
-
Bickhart, D. M. et al. Single-molecule sequencing and chromatin conformation capture enable de novo reference assembly of the domestic goat genome. Nat. Genet. 49, 643-650 (2017).
-
(2017)
Nat. Genet.
, vol.49
, pp. 643-650
-
-
Bickhart, D.M.1
-
81
-
-
85019066712
-
Canu: Scalable and accurate long-read assembly via adaptive k-mer weighting and repeat separation
-
Koren, S. et al. Canu: scalable and accurate long-read assembly via adaptive k-mer weighting and repeat separation. Genome Res. 27, 722-736 (2017).
-
(2017)
Genome Res.
, vol.27
, pp. 722-736
-
-
Koren, S.1
-
82
-
-
67649884743
-
Fast and accurate short read alignment with Burrows-Wheeler transform
-
Li, H. & Durbin, R. Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics 25, 1754-1760 (2009).
-
(2009)
Bioinformatics
, vol.25
, pp. 1754-1760
-
-
Li, H.1
Durbin, R.2
-
83
-
-
62349130698
-
Ultrafast and memoryefficient alignment of short DNA sequences to the human genome
-
Langmead, B., Trapnell, C., Pop, M. & Salzberg, S. L. Ultrafast and memoryefficient alignment of short DNA sequences to the human genome. Genome Biol. 10, R25 (2009).
-
(2009)
Genome Biol.
, vol.10
, pp. R25
-
-
Langmead, B.1
Trapnell, C.2
Pop, M.3
Salzberg, S.L.4
-
84
-
-
68549104404
-
The sequence alignment/map format and SAMtools
-
Li, H. et al. The sequence alignment/map format and SAMtools. Bioinformatics 25, 2078-2079 (2009).
-
(2009)
Bioinformatics
, vol.25
, pp. 2078-2079
-
-
Li, H.1
-
85
-
-
77956295988
-
The genome analysis toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data
-
McKenna, A. et al. The genome analysis toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data. Genome Res. 20, 1297-1303 (2010).
-
(2010)
Genome Res.
, vol.20
, pp. 1297-1303
-
-
McKenna, A.1
-
86
-
-
84925497196
-
Resolving the complexity of the human genome using single-molecule sequencing
-
Chaisson, M. J. et al. Resolving the complexity of the human genome using single-molecule sequencing. Nature 517, 608-611 (2015).
-
(2015)
Nature
, vol.517
, pp. 608-611
-
-
Chaisson, M.J.1
-
87
-
-
84929508843
-
Haplotype-resolved genome sequencing: Experimental methods and applications
-
Snyder, M. W., Adey, A., Kitzman, J. O. & Shendure, J. Haplotype-resolved genome sequencing: experimental methods and applications. Nat. Rev. Genet. 16, 344-358 (2015).
-
(2015)
Nat. Rev. Genet.
, vol.16
, pp. 344-358
-
-
Snyder, M.W.1
Adey, A.2
Kitzman, J.O.3
Shendure, J.4
-
88
-
-
77952136530
-
A draft sequence of the Neandertal genome
-
Green, R. E. et al. A draft sequence of the Neandertal genome. Science 328, 710-722 (2010).
-
(2010)
Science
, vol.328
, pp. 710-722
-
-
Green, R.E.1
-
89
-
-
35648976118
-
The diploid genome sequence of an individual human
-
Levy, S. et al. The diploid genome sequence of an individual human. PLoS Biol. 5, e254 (2007).
-
(2007)
PLoS Biol.
, vol.5
, pp. e254
-
-
Levy, S.1
-
90
-
-
42249087308
-
The complete genome of an individual by massively parallel DNA sequencing
-
Wheeler, D. A. et al. The complete genome of an individual by massively parallel DNA sequencing. Nature 452, 872-876 (2008).
-
(2008)
Nature
, vol.452
, pp. 872-876
-
-
Wheeler, D.A.1
-
91
-
-
55549097849
-
The diploid genome sequence of an Asian individual
-
Wang, J. et al. The diploid genome sequence of an Asian individual. Nature 456, 60-65 (2008).
-
(2008)
Nature
, vol.456
, pp. 60-65
-
-
Wang, J.1
-
92
-
-
55549101623
-
DNA sequencing of a cytogenetically normal acute myeloid leukaemia genome
-
Ley, T. J. et al. DNA sequencing of a cytogenetically normal acute myeloid leukaemia genome. Nature 456, 66-72 (2008).
-
(2008)
Nature
, vol.456
, pp. 66-72
-
-
Ley, T.J.1
-
93
-
-
35748951614
-
Direct selection of human genomic loci by microarray hybridization
-
Albert, T. J. et al. Direct selection of human genomic loci by microarray hybridization. Nat. Methods 4, 903-905 (2007).
-
(2007)
Nat. Methods
, vol.4
, pp. 903-905
-
-
Albert, T.J.1
-
94
-
-
35748959649
-
Microarray-based genomic selection for high-throughput resequencing
-
Okou, D. T. et al. Microarray-based genomic selection for high-throughput resequencing. Nat. Methods 4, 907-909 (2007).
-
(2007)
Nat. Methods
, vol.4
, pp. 907-909
-
-
Okou, D.T.1
-
95
-
-
35748953750
-
Multiplex amplification of large sets of human exons
-
Porreca, G. J. et al. Multiplex amplification of large sets of human exons. Nat. Methods 4, 931-936 (2007).
-
(2007)
Nat. Methods
, vol.4
, pp. 931-936
-
-
Porreca, G.J.1
-
96
-
-
36549021060
-
Genome-wide in situ exon capture for selective resequencing
-
Hodges, E. et al. Genome-wide in situ exon capture for selective resequencing. Nat. Genet. 39, 1522-1527 (2007).
-
(2007)
Nat. Genet.
, vol.39
, pp. 1522-1527
-
-
Hodges, E.1
-
97
-
-
70249111091
-
Targeted capture and massively parallel sequencing of 12 human exomes
-
Ng, S. B. et al. Targeted capture and massively parallel sequencing of 12 human exomes. Nature 461, 272-276 (2009).
-
(2009)
Nature
, vol.461
, pp. 272-276
-
-
Ng, S.B.1
-
98
-
-
84975742565
-
A map of human genome variation from population-scale sequencing
-
The 1000 Genomes Project Consortium.
-
The 1000 Genomes Project Consortium. A map of human genome variation from population-scale sequencing. Nature 467, 1061-1073 (2010).
-
(2010)
Nature
, vol.467
, pp. 1061-1073
-
-
-
99
-
-
84943171338
-
A global reference for human genetic variation
-
The 1000 Genomes Project Consortium.
-
The 1000 Genomes Project Consortium. A global reference for human genetic variation. Nature 526, 68-74 (2015).
-
(2015)
Nature
, vol.526
, pp. 68-74
-
-
-
100
-
-
84872143942
-
Analysis of 6,515 exomes reveals the recent origin of most human protein-coding variants
-
Fu, W. et al. Analysis of 6,515 exomes reveals the recent origin of most human protein-coding variants. Nature 493, 216-220 (2013).
-
(2013)
Nature
, vol.493
, pp. 216-220
-
-
Fu, W.1
-
101
-
-
58149490683
-
Noninvasive prenatal diagnosis of fetal chromosomal aneuploidy by massively parallel genomic sequencing of DNA in maternal plasma
-
Chiu, R. W. et al. Noninvasive prenatal diagnosis of fetal chromosomal aneuploidy by massively parallel genomic sequencing of DNA in maternal plasma. Proc. Natl Acad. Sci. USA 105, 20458-20463 (2008).
-
(2008)
Proc. Natl Acad. Sci. USA
, vol.105
, pp. 20458-20463
-
-
Chiu, R.W.1
-
102
-
-
55849124028
-
Noninvasive diagnosis of fetal aneuploidy by shotgun sequencing DNA from maternal blood
-
Fan, H. C., Blumenfeld, Y. J., Chitkara, U., Hudgins, L. & Quake, S. R. Noninvasive diagnosis of fetal aneuploidy by shotgun sequencing DNA from maternal blood. Proc. Natl Acad. Sci. USA 105, 16266-16271 (2008).
-
(2008)
Proc. Natl Acad. Sci. USA
, vol.105
, pp. 16266-16271
-
-
Fan, H.C.1
Blumenfeld, Y.J.2
Chitkara, U.3
Hudgins, L.4
Quake, S.R.5
-
103
-
-
73149123343
-
Genetic diagnosis by whole exome capture and massively parallel DNA sequencing
-
Choi, M. et al. Genetic diagnosis by whole exome capture and massively parallel DNA sequencing. Proc. Natl Acad. Sci. USA 106, 19096-19101 (2009).
-
(2009)
Proc. Natl Acad. Sci. USA
, vol.106
, pp. 19096-19101
-
-
Choi, M.1
-
104
-
-
84951569870
-
Genetic studies in intellectual disability and related disorders
-
Vissers, L. E. L. M., Gilissen, C. & Veltman, J. A. Genetic studies in intellectual disability and related disorders. Nat. Rev. Genet. 17, 9-18 (2016).
-
(2016)
Nat. Rev. Genet.
, vol.17
, pp. 9-18
-
-
Vissers, L.E.L.M.1
Gilissen, C.2
Veltman, J.A.3
-
105
-
-
84918771753
-
Molecular findings among patients referred for clinical whole-exome sequencing
-
Yang, Y. et al. Molecular findings among patients referred for clinical whole-exome sequencing. J. Am. Med. Assoc. 312, 1870-1879 (2014).
-
(2014)
J. Am. Med. Assoc.
, vol.312
, pp. 1870-1879
-
-
Yang, Y.1
-
106
-
-
36248962105
-
The genomic landscapes of human breast and colorectal cancers
-
Wood, L. D. et al. The genomic landscapes of human breast and colorectal cancers. Science 318, 1108-1113 (2007).
-
(2007)
Science
, vol.318
, pp. 1108-1113
-
-
Wood, L.D.1
-
107
-
-
0025879424
-
Complementary DNA sequencing: Expressed sequence tags and human genome project
-
Adams, M. D. et al. Complementary DNA sequencing: expressed sequence tags and human genome project. Science 252, 1651-1656 (1991).
-
(1991)
Science
, vol.252
, pp. 1651-1656
-
-
Adams, M.D.1
-
108
-
-
0020560945
-
A new troponin T and cDNA clones for 13 different muscle proteins, found by shotgun sequencing
-
Putney, S. D., Herlihy, W. C. & Schimmel, P. A new troponin T and cDNA clones for 13 different muscle proteins, found by shotgun sequencing. Nature 302, 718-721 (1983).
-
(1983)
Nature
, vol.302
, pp. 718-721
-
-
Putney, S.D.1
Herlihy, W.C.2
Schimmel, P.3
-
109
-
-
0028789793
-
Serial analysis of gene expression
-
Velculescu, V. E., Zhang, L., Vogelstein, B. & Kinzler, K. W. Serial analysis of gene expression. Science 270, 484-487 (1995).
-
(1995)
Science
, vol.270
, pp. 484-487
-
-
Velculescu, V.E.1
Zhang, L.2
Vogelstein, B.3
Kinzler, K.W.4
-
110
-
-
46249103973
-
Stem cell transcriptome profiling via massive-scale mRNA sequencing
-
Cloonan, N. et al. Stem cell transcriptome profiling via massive-scale mRNA sequencing. Nat. Methods 5, 613-619 (2008).
-
(2008)
Nat. Methods
, vol.5
, pp. 613-619
-
-
Cloonan, N.1
-
111
-
-
42749087226
-
Highly integrated single-base resolution maps of the epigenome in Arabidopsis
-
Lister, R. et al. Highly integrated single-base resolution maps of the epigenome in Arabidopsis. Cell 133, 523-536 (2008).
-
(2008)
Cell
, vol.133
, pp. 523-536
-
-
Lister, R.1
-
112
-
-
46249106990
-
Mapping and quantifying mammalian transcriptomes by RNA-seq
-
Mortazavi, A., Williams, B. A., McCue, K., Schaeffer, L. & Wold, B. Mapping and quantifying mammalian transcriptomes by RNA-seq. Nat. Methods 5, 621-628 (2008).
-
(2008)
Nat. Methods
, vol.5
, pp. 621-628
-
-
Mortazavi, A.1
Williams, B.A.2
McCue, K.3
Schaeffer, L.4
Wold, B.5
-
113
-
-
45549088326
-
The transcriptional landscape of the yeast genome defined by RNA sequencing
-
Nagalakshmi, U. et al. The transcriptional landscape of the yeast genome defined by RNA sequencing. Science 320, 1344-1349 (2008).
-
(2008)
Science
, vol.320
, pp. 1344-1349
-
-
Nagalakshmi, U.1
-
114
-
-
46249096804
-
Dynamic repertoire of a eukaryotic transcriptome surveyed at single-nucleotide resolution
-
Wilhelm, B. T. et al. Dynamic repertoire of a eukaryotic transcriptome surveyed at single-nucleotide resolution. Nature 453, 1239-1243 (2008).
-
(2008)
Nature
, vol.453
, pp. 1239-1243
-
-
Wilhelm, B.T.1
-
115
-
-
65449136284
-
TopHat: Discovering splice junctions with RNA-seq
-
Trapnell, C., Pachter, L. & Salzberg, S. L. TopHat: discovering splice junctions with RNA-seq. Bioinformatics 25, 1105-1111 (2009).
-
(2009)
Bioinformatics
, vol.25
, pp. 1105-1111
-
-
Trapnell, C.1
Pachter, L.2
Salzberg, S.L.3
-
116
-
-
77952123055
-
Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation
-
Trapnell, C. et al. Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation. Nat. Biotechnol. 28, 511-515 (2010).
-
(2010)
Nat. Biotechnol.
, vol.28
, pp. 511-515
-
-
Trapnell, C.1
-
117
-
-
34250159524
-
Genome-wide mapping of in vivo protein-DNA interactions
-
Johnson, D. S., Mortazavi, A., Myers, R. M. & Wold, B. Genome-wide mapping of in vivo protein-DNA interactions. Science 316, 1497-1502 (2007).
-
(2007)
Science
, vol.316
, pp. 1497-1502
-
-
Johnson, D.S.1
Mortazavi, A.2
Myers, R.M.3
Wold, B.4
-
118
-
-
38649099445
-
High-resolution mapping and characterization of open chromatin across the genome
-
Boyle, A. P. et al. High-resolution mapping and characterization of open chromatin across the genome. Cell 132, 311-322 (2008).
-
(2008)
Cell
, vol.132
, pp. 311-322
-
-
Boyle, A.P.1
-
119
-
-
62549134121
-
Genomewide analysis in vivo of translation with nucleotide resolution using ribosome profiling
-
Ingolia, N. T., Ghaemmaghami, S., Newman, J. R. & Weissman, J. S. Genomewide analysis in vivo of translation with nucleotide resolution using ribosome profiling. Science 324, 218-223 (2009).
-
(2009)
Science
, vol.324
, pp. 218-223
-
-
Ingolia, N.T.1
Ghaemmaghami, S.2
Newman, J.R.3
Weissman, J.S.4
-
120
-
-
84869457261
-
The expanding scope of DNA sequencing
-
Shendure, J. & Lieberman Aiden, E. The expanding scope of DNA sequencing. Nat. Biotechnol. 30, 1084-1094 (2012).
-
(2012)
Nat. Biotechnol.
, vol.30
, pp. 1084-1094
-
-
Shendure, J.1
Lieberman Aiden, E.2
-
121
-
-
84862276328
-
Structure, function and diversity of the healthy human microbiome
-
Human Microbiome Project Consortium.
-
Human Microbiome Project Consortium. Structure, function and diversity of the healthy human microbiome. Nature 486, 207-214 (2012).
-
(2012)
Nature
, vol.486
, pp. 207-214
-
-
-
122
-
-
1542377296
-
Community structure and metabolism through reconstruction of microbial genomes from the environment
-
Tyson, G. W. et al. Community structure and metabolism through reconstruction of microbial genomes from the environment. Nature 428, 37-43 (2004).
-
(2004)
Nature
, vol.428
, pp. 37-43
-
-
Tyson, G.W.1
-
123
-
-
11144354360
-
Environmental genome shotgun sequencing of the Sargasso Sea
-
Venter, J. C. et al. Environmental genome shotgun sequencing of the Sargasso Sea. Science 304, 66-74 (2004).
-
(2004)
Science
, vol.304
, pp. 66-74
-
-
Venter, J.C.1
-
124
-
-
84874111575
-
The microbiome explored: Recent insights and future challenges
-
Blaser, M., Bork, P., Fraser, C., Knight, R. & Wang, J. The microbiome explored: recent insights and future challenges. Nat. Rev. Microbiol. 11, 213-217 (2013).
-
(2013)
Nat. Rev. Microbiol.
, vol.11
, pp. 213-217
-
-
Blaser, M.1
Bork, P.2
Fraser, C.3
Knight, R.4
Wang, J.5
-
125
-
-
84859625932
-
Next-generation sequencing technologies for environmental DNA research
-
Shokralla, S., Spall, J. L., Gibson, J. F. & Hajibabaei, M. Next-generation sequencing technologies for environmental DNA research. Mol. Ecol. 21, 1794-1805 (2012).
-
(2012)
Mol. Ecol.
, vol.21
, pp. 1794-1805
-
-
Shokralla, S.1
Spall, J.L.2
Gibson, J.F.3
Hajibabaei, M.4
-
126
-
-
34548308787
-
A 100%-complete sequence reveals unusually simple genomic features in the hot-spring red alga Cyanidioschyzon merolae
-
Nozaki, H. et al. A 100%-complete sequence reveals unusually simple genomic features in the hot-spring red alga Cyanidioschyzon merolae. BMC Biol. 5, 28 (2007).
-
(2007)
BMC Biol
, vol.5
, pp. 28
-
-
Nozaki, H.1
-
127
-
-
85010073180
-
Protein structure determination using metagenome sequence data
-
Ovchinnikov, S. et al. Protein structure determination using metagenome sequence data. Science 355, 294-298 (2017).
-
(2017)
Science
, vol.355
, pp. 294-298
-
-
Ovchinnikov, S.1
-
128
-
-
84872459720
-
Identifying personal genomes by surname inference
-
Gymrek, M., McGuire, A. L., Golan, D., Halperin, E. & Erlich, Y. Identifying personal genomes by surname inference. Science 339, 321-324 (2013).
-
(2013)
Science
, vol.339
, pp. 321-324
-
-
Gymrek, M.1
McGuire, A.L.2
Golan, D.3
Halperin, E.4
Erlich, Y.5
-
129
-
-
13844283117
-
In situ genotyping individual DNA molecules by target-primed rolling-circle amplification of padlock probes
-
Larsson, C. et al. In situ genotyping individual DNA molecules by target-primed rolling-circle amplification of padlock probes. Nat. Methods 1, 227-232 (2004).
-
(2004)
Nat. Methods
, vol.1
, pp. 227-232
-
-
Larsson, C.1
-
130
-
-
84897090228
-
Highly multiplexed subcellular RNA sequencing in situ
-
Lee, J. H. et al. Highly multiplexed subcellular RNA sequencing in situ. Science 343, 1360-1363 (2014).
-
(2014)
Science
, vol.343
, pp. 1360-1363
-
-
Lee, J.H.1
-
131
-
-
84974576984
-
Whole-organism lineage tracing by combinatorial and cumulative genome editing
-
McKenna, A. et al. Whole-organism lineage tracing by combinatorial and cumulative genome editing. Science 353, aaf7907 (2016).
-
(2016)
Science
, vol.353
, pp. aaf7907
-
-
McKenna, A.1
-
132
-
-
85026439801
-
Using high-throughput barcode sequencing to efficiently map connectomes
-
Peikon, I. D. et al. Using high-throughput barcode sequencing to efficiently map connectomes. Nucleic Acids Res. 45, e115 (2017).
-
(2017)
Nucleic Acids Res.
, vol.45
, pp. e115
-
-
Peikon, I.D.1
-
133
-
-
84975270845
-
Molecular recordings by directed CRISPR spacer acquisition
-
Shipman, S. L., Nivala, J., Macklis, J. D. & Church, G. M. Molecular recordings by directed CRISPR spacer acquisition. Science 353, aaf1175 (2016).
-
(2016)
Science
, vol.353
, pp. aaf1175
-
-
Shipman, S.L.1
Nivala, J.2
Macklis, J.D.3
Church, G.M.4
-
134
-
-
84865175009
-
Measuring cation dependent DNA polymerase fidelity landscapes by deep sequencing
-
Zamft, B. M. et al. Measuring cation dependent DNA polymerase fidelity landscapes by deep sequencing. PLoS ONE 7, e43876 (2012).
-
(2012)
PLoS ONE
, vol.7
, pp. e43876
-
-
Zamft, B.M.1
-
136
-
-
84930741617
-
Pim kinase inhibitors evaluated with a single-molecule engineered nanopore sensor
-
Harrington, L., Alexander, L. T., Knapp, S. & Bayley, H. Pim kinase inhibitors evaluated with a single-molecule engineered nanopore sensor. Angew. Chem. Int. Edn Engl. 54, 8154-8159 (2015).
-
(2015)
Angew. Chem. Int. Edn Engl.
, vol.54
, pp. 8154-8159
-
-
Harrington, L.1
Alexander, L.T.2
Knapp, S.3
Bayley, H.4
-
137
-
-
84926077196
-
Continuous observation of the stochastic motion of an individual small-molecule walker
-
Pulcu, G. S., Mikhailova, E., Choi, L. S. & Bayley, H. Continuous observation of the stochastic motion of an individual small-molecule walker. Nat. Nanotechnol. 10, 76-83 (2015).
-
(2015)
Nat. Nanotechnol.
, vol.10
, pp. 76-83
-
-
Pulcu, G.S.1
Mikhailova, E.2
Choi, L.S.3
Bayley, H.4
-
138
-
-
84919763571
-
Protein co-translocational unfolding depends on the direction of pulling
-
Rodriguez-Larrea, D. & Bayley, H. Protein co-translocational unfolding depends on the direction of pulling. Nat. Commun. 5, 4841 (2014).
-
(2014)
Nat. Commun.
, vol.5
, pp. 4841
-
-
Rodriguez-Larrea, D.1
Bayley, H.2
-
139
-
-
0023715281
-
A new method of sequencing DNA
-
Hyman, E. D. A new method of sequencing DNA. Anal. Biochem. 174, 423-436 (1988).
-
(1988)
Anal. Biochem.
, vol.174
, pp. 423-436
-
-
Hyman, E.D.1
-
140
-
-
0026534922
-
DNA sequencing with dye-labeled terminators and T7 DNA polymerase: Effect of dyes and dNTPs on incorporation of dye-terminators and probability analysis of termination fragments
-
Lee, L. G. et al. DNA sequencing with dye-labeled terminators and T7 DNA polymerase: effect of dyes and dNTPs on incorporation of dye-terminators and probability analysis of termination fragments. Nucleic Acids Res. 20, 2471-2483 (1992).
-
(1992)
Nucleic Acids Res.
, vol.20
, pp. 2471-2483
-
-
Lee, L.G.1
-
141
-
-
78650009474
-
Identifying single bases in a DNA oligomer with electron tunnelling
-
Huang, S. et al. Identifying single bases in a DNA oligomer with electron tunnelling. Nat. Nanotechnol. 5, 868-873 (2010).
-
(2010)
Nat. Nanotechnol.
, vol.5
, pp. 868-873
-
-
Huang, S.1
-
142
-
-
79960597679
-
An integrated semiconductor device enabling non-optical genome sequencing
-
Rothberg, J. M. et al. An integrated semiconductor device enabling non-optical genome sequencing. Nature 475, 348-352 (2011).
-
(2011)
Nature
, vol.475
, pp. 348-352
-
-
Rothberg, J.M.1
-
143
-
-
84859629295
-
Reading DNA at single-nucleotide resolution with a mutant MspA nanopore and phi29 DNA polymerase
-
Manrao, E. A. et al. Reading DNA at single-nucleotide resolution with a mutant MspA nanopore and phi29 DNA polymerase. Nat. Biotechnol. 30, 349-353 (2012).
-
(2012)
Nat. Biotechnol.
, vol.30
, pp. 349-353
-
-
Manrao, E.A.1
-
144
-
-
84859175970
-
Automated forward and reverse ratcheting of DNA in a nanopore at 5-A precision
-
Cherf, G. M. et al. Automated forward and reverse ratcheting of DNA in a nanopore at 5-A precision. Nat. Biotechnol. 30, 344-348 (2012).
-
(2012)
Nat. Biotechnol.
, vol.30
, pp. 344-348
-
-
Cherf, G.M.1
-
145
-
-
84867331947
-
A high-coverage genome sequence from an archaic Denisovan individual
-
Meyer, M. et al. A high-coverage genome sequence from an archaic Denisovan individual. Science 338, 222-226 (2012).
-
(2012)
Science
, vol.338
, pp. 222-226
-
-
Meyer, M.1
-
146
-
-
0034649566
-
Analysis of the genome sequence of the flowering plant Arabidopsis thaliana
-
Arabidopsis Genome Initiative.
-
Arabidopsis Genome Initiative. Analysis of the genome sequence of the flowering plant Arabidopsis thaliana. Nature 408, 796-815 (2000).
-
(2000)
Nature
, vol.408
, pp. 796-815
-
-
-
147
-
-
1542563409
-
Initial sequencing and comparative analysis of the mouse genome
-
Mouse Genome Sequencing Consortium.
-
Mouse Genome Sequencing Consortium. Initial sequencing and comparative analysis of the mouse genome. Nature 420, 520-562 (2002).
-
(2002)
Nature
, vol.420
, pp. 520-562
-
-
-
148
-
-
1842684068
-
Genome sequence of the Brown Norway rat yields insights into mammalian evolution
-
Gibbs, R. A. et al. Genome sequence of the Brown Norway rat yields insights into mammalian evolution. Nature 428, 493-521 (2004).
-
(2004)
Nature
, vol.428
, pp. 493-521
-
-
Gibbs, R.A.1
-
149
-
-
24344500211
-
Initial sequence of the chimpanzee genome and comparison with the human genome
-
The Chimpanzee Sequencing and Analysis Consortium.
-
The Chimpanzee Sequencing and Analysis Consortium. Initial sequence of the chimpanzee genome and comparison with the human genome. Nature 437, 69-87 (2005).
-
(2005)
Nature
, vol.437
, pp. 69-87
-
-
-
150
-
-
84907150192
-
The map-based sequence of the rice genome
-
International Rice Genome Sequencing Project.
-
International Rice Genome Sequencing Project. The map-based sequence of the rice genome. Nature 436, 793-800 (2005).
-
(2005)
Nature
, vol.436
, pp. 793-800
-
-
-
151
-
-
70450202132
-
The B73 maize genome: Complexity, diversity, and dynamics
-
Schnable, P. S. et al. The B73 maize genome: complexity, diversity, and dynamics. Science 326, 1112-1115 (2009).
-
(2009)
Science
, vol.326
, pp. 1112-1115
-
-
Schnable, P.S.1
-
152
-
-
84881401766
-
The haplotype-resolved genome and epigenome of the aneuploid HeLa cancer cell line
-
Adey, A. et al. The haplotype-resolved genome and epigenome of the aneuploid HeLa cancer cell line. Nature 500, 207-211 (2013).
-
(2013)
Nature
, vol.500
, pp. 207-211
-
-
Adey, A.1
-
153
-
-
84877612139
-
The genomic and transcriptomic landscape of a HeLa cell line
-
Landry, J. J. et al. The genomic and transcriptomic landscape of a HeLa cell line. G3 (Bethesda) 3, 1213-1224 (2013).
-
(2013)
G3 (Bethesda)
, vol.3
, pp. 1213-1224
-
-
Landry, J.J.1
-
154
-
-
84876798186
-
The zebrafish reference genome sequence and its relationship to the human genome
-
Howe, K. et al. The zebrafish reference genome sequence and its relationship to the human genome. Nature 496, 498-503 (2013).
-
(2013)
Nature
, vol.496
, pp. 498-503
-
-
Howe, K.1
-
155
-
-
84992376574
-
Genome evolution in the allotetraploid frog Xenopus laevis
-
Session, A. M. et al. Genome evolution in the allotetraploid frog Xenopus laevis. Nature 538, 336-343 (2016).
-
(2016)
Nature
, vol.538
, pp. 336-343
-
-
Session, A.M.1
-
156
-
-
0019887799
-
Identification of common molecular subsequences
-
Smith, T. F. & Waterman, M. S. Identification of common molecular subsequences. J. Mol. Biol. 147, 195-197 (1981).
-
(1981)
J. Mol. Biol.
, vol.147
, pp. 195-197
-
-
Smith, T.F.1
Waterman, M.S.2
-
157
-
-
0031586003
-
Prediction of complete gene structures in human genomic DNA
-
Burge, C. & Karlin, S. Prediction of complete gene structures in human genomic DNA. J. Mol. Biol. 268, 78-94 (1997).
-
(1997)
J. Mol. Biol.
, vol.268
, pp. 78-94
-
-
Burge, C.1
Karlin, S.2
-
158
-
-
0036226603
-
BLAT - The BLAST-like alignment tool
-
Kent, W. J. BLAT - the BLAST-like alignment tool. Genome Res. 12, 656-664 (2002).
-
(2002)
Genome Res.
, vol.12
, pp. 656-664
-
-
Kent, W.J.1
-
159
-
-
0036079158
-
The human genome browser at UCSC
-
Kent, W. J. et al. The human genome browser at UCSC. Genome Res. 12, 996-1006 (2002).
-
(2002)
Genome Res.
, vol.12
, pp. 996-1006
-
-
Kent, W.J.1
-
160
-
-
18444402182
-
The Ensembl genome database project
-
Hubbard, T. et al. The Ensembl genome database project. Nucleic Acids Res. 30, 38-41 (2002).
-
(2002)
Nucleic Acids Res.
, vol.30
, pp. 38-41
-
-
Hubbard, T.1
-
161
-
-
25844449770
-
Galaxy: A platform for interactive large-scale genome analysis
-
Giardine, B. et al. Galaxy: a platform for interactive large-scale genome analysis. Genome Res. 15, 1451-1455 (2005).
-
(2005)
Genome Res.
, vol.15
, pp. 1451-1455
-
-
Giardine, B.1
-
162
-
-
43149086380
-
ALLPATHS: De novo assembly of whole-genome shotgun microreads
-
Butler, J. et al. ALLPATHS: de novo assembly of whole-genome shotgun microreads. Genome Res. 18, 810-820 (2008).
-
(2008)
Genome Res.
, vol.18
, pp. 810-820
-
-
Butler, J.1
-
163
-
-
69549116107
-
BreakDancer: An algorithm for high-resolution mapping of genomic structural variation
-
Chen, K. et al. BreakDancer: an algorithm for high-resolution mapping of genomic structural variation. Nat. Methods 6, 677-681 (2009).
-
(2009)
Nat. Methods
, vol.6
, pp. 677-681
-
-
Chen, K.1
-
164
-
-
70350694443
-
Pindel: A pattern growth approach to detect break points of large deletions and medium sized insertions from paired-end short reads
-
Ye, K., Schulz, M. H., Long, Q., Apweiler, R. & Ning, Z. Pindel: a pattern growth approach to detect break points of large deletions and medium sized insertions from paired-end short reads. Bioinformatics 25, 2865-2871 (2009).
-
(2009)
Bioinformatics
, vol.25
, pp. 2865-2871
-
-
Ye, K.1
Schulz, M.H.2
Long, Q.3
Apweiler, R.4
Ning, Z.5
-
165
-
-
75649124547
-
De novo assembly of human genomes with massively parallel short read sequencing
-
Li, R. et al. De novo assembly of human genomes with massively parallel short read sequencing. Genome Res. 20, 265-272 (2010).
-
(2010)
Genome Res
, vol.20
, pp. 265-272
-
-
Li, R.1
-
166
-
-
78651271733
-
Integrative genomics viewer
-
Robinson, J. T. et al. Integrative genomics viewer. Nat. Biotechnol. 29, 24-26 (2011).
-
(2011)
Nat. Biotechnol.
, vol.29
, pp. 24-26
-
-
Robinson, J.T.1
-
167
-
-
84880798154
-
Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data
-
Chin, C. S. et al. Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data. Nat. Methods 10, 563-569 (2013).
-
(2013)
Nat. Methods
, vol.10
, pp. 563-569
-
-
Chin, C.S.1
-
168
-
-
0032524383
-
Large-scale identification, mapping, and genotyping of single-nucleotide polymorphisms in the human genome
-
Wang, D. G. et al. Large-scale identification, mapping, and genotyping of single-nucleotide polymorphisms in the human genome. Science 280, 1077-1082 (1998).
-
(1998)
Science
, vol.280
, pp. 1077-1082
-
-
Wang, D.G.1
-
169
-
-
75149155568
-
The sequence and de novo assembly of the giant panda genome
-
Li, R. et al. The sequence and de novo assembly of the giant panda genome. Nature 463, 311-317 (2010).
-
(2010)
Nature
, vol.463
, pp. 311-317
-
-
Li, R.1
-
170
-
-
78651333227
-
Haplotype-resolved genome sequencing of a Gujarati Indian individual
-
Kitzman, J. O. et al. Haplotype-resolved genome sequencing of a Gujarati Indian individual. Nat. Biotechnol. 29, 59-63 (2011).
-
(2011)
Nat. Biotechnol.
, vol.29
, pp. 59-63
-
-
Kitzman, J.O.1
-
171
-
-
78651304279
-
Whole-genome molecular haplotyping of single cells
-
Fan, H. C., Wang, J., Potanina, A. & Quake, S. R. Whole-genome molecular haplotyping of single cells. Nat. Biotechnol. 29, 51-57 (2011).
-
(2011)
Nat. Biotechnol.
, vol.29
, pp. 51-57
-
-
Fan, H.C.1
Wang, J.2
Potanina, A.3
Quake, S.R.4
-
172
-
-
84991738269
-
De novo assembly and phasing of a Korean human genome
-
Seo, J. S. et al. De novo assembly and phasing of a Korean human genome. Nature 538, 243-247 (2016).
-
(2016)
Nature
, vol.538
, pp. 243-247
-
-
Seo, J.S.1
|