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Volumn 61, Issue 1, 2015, Pages 25-31

Nanopore sequencing: From imagination to reality

Author keywords

[No Author keywords available]

Indexed keywords

DNA; BACTERIAL TOXIN; HEMOLYSIN; LIPID BILAYER; SINGLE STRANDED DNA; STAPHYLOCOCCAL ALPHA-TOXIN;

EID: 84920506933     PISSN: 00099147     EISSN: 15308561     Source Type: Journal    
DOI: 10.1373/clinchem.2014.223016     Document Type: Article
Times cited : (190)

References (40)
  • 1
    • 0021844629 scopus 로고
    • Secondary structure and assembly mechanism of an oligomeric channel protein
    • Tobkes N, Wallace BA, Bayley H. Secondary structure and assembly mechanism of an oligomeric channel protein. Biochemistry 1985;24:1915-20.
    • (1985) Biochemistry , vol.24 , pp. 1915-1920
    • Tobkes, N.1    Wallace, B.A.2    Bayley, H.3
  • 2
    • 66649113467 scopus 로고    scopus 로고
    • Membrane-protein structure: Piercing insights
    • Bayley H. Membrane-protein structure: piercing insights. Nature 2009;459:651-2.
    • (2009) Nature , vol.459 , pp. 651-652
    • Bayley, H.1
  • 3
    • 0030447720 scopus 로고    scopus 로고
    • Structure of staphylococcal α-hemolysin, a heptameric transmembrane pore
    • Song L, Hobaugh MR, Shustak C, Cheley S, Bayley H, Gouaux JE. Structure of staphylococcal α-hemolysin, a heptameric transmembrane pore. Science 1996;274: 1859-66.
    • (1996) Science , vol.274 , pp. 1859-1866
    • Song, L.1    Hobaugh, M.R.2    Shustak, C.3    Cheley, S.4    Bayley, H.5    Gouaux, J.E.6
  • 5
    • 0035855827 scopus 로고    scopus 로고
    • Stochastic sensors inspired by biology
    • Bayley H, Cremer PS. Stochastic sensors inspired by biology. Nature 2001;413:226-30.
    • (2001) Nature , vol.413 , pp. 226-230
    • Bayley, H.1    Cremer, P.S.2
  • 6
    • 0033594410 scopus 로고    scopus 로고
    • Stochastic sensing of organic analytes by a pore-forming protein containing a molecular adapter
    • Gu L-Q, Braha O, Conlan S, Cheley S, Bayley H. Stochastic sensing of organic analytes by a pore-forming protein containing a molecular adapter. Nature 1999;398: 686-90.
    • (1999) Nature , vol.398 , pp. 686-690
    • Gu, L.-Q.1    Braha, O.2    Conlan, S.3    Cheley, S.4    Bayley, H.5
  • 7
    • 0033776849 scopus 로고    scopus 로고
    • Detecting protein analytes that modulate transmembrane movement of a polymer chain within a single protein pore
    • Movileanu L, Howorka S, Braha O, Bayley H. Detecting protein analytes that modulate transmembrane movement of a polymer chain within a single protein pore. Nature Biotechnol 2000;18:1091-5.
    • (2000) Nature Biotechnol , vol.18 , pp. 1091-1095
    • Movileanu, L.1    Howorka, S.2    Braha, O.3    Bayley, H.4
  • 8
    • 33845415246 scopus 로고    scopus 로고
    • A genetically-encoded pore for the stochastic detection of a protein kinase
    • Cheley S, Xie H, Bayley H. A genetically-encoded pore for the stochastic detection of a protein kinase. Chembiochem 2006;7:1923-7.
    • (2006) Chembiochem , vol.7 , pp. 1923-1927
    • Cheley, S.1    Xie, H.2    Bayley, H.3
  • 9
  • 10
    • 84866419795 scopus 로고    scopus 로고
    • Continuous stochastic detection of amino acid enantiomers with a protein nanopore
    • Boersma AJ, Bayley H. Continuous stochastic detection of amino acid enantiomers with a protein nanopore. Angew Chem Int Ed Engl 2012;51:9606-9.
    • (2012) Angew Chem Int Ed Engl , vol.51 , pp. 9606-9609
    • Boersma, A.J.1    Bayley, H.2
  • 12
    • 44349108149 scopus 로고    scopus 로고
    • Singlemolecule covalent chemistry in a protein nanoreactor
    • Rigler R, Vogel H, eds., Heidelberg, Germany: Springer
    • Bayley H, Luchian T, Shin S-H, Steffensen MB. Singlemolecule covalent chemistry in a protein nanoreactor. In: Rigler R, Vogel H, eds. Single molecules and nanotechnology. Heidelberg, Germany: Springer; 2008: 251-77.
    • (2008) Single Molecules and Nanotechnology , pp. 251-277
    • Bayley, H.1    Luchian, T.2    Shin, S.-H.3    Steffensen, M.B.4
  • 13
    • 84903195476 scopus 로고    scopus 로고
    • Single-molecule analysis of chirality in a multicomponent reaction network
    • Steffensen MB, Rotem D, Bayley H. Single-molecule analysis of chirality in a multicomponent reaction network. Nat Chem 2014;603-7.
    • (2014) Nat Chem , pp. 603-607
    • Steffensen, M.B.1    Rotem, D.2    Bayley, H.3
  • 14
    • 44349093042 scopus 로고    scopus 로고
    • Single-molecule detection of nitrogen mustards by covalent reaction within a protein nanopore
    • Wu HC, Bayley H. Single-molecule detection of nitrogen mustards by covalent reaction within a protein nanopore. J Am Chem Soc 2008;130:6813-9.
    • (2008) J Am Chem Soc , vol.130 , pp. 6813-6819
    • Wu, H.C.1    Bayley, H.2
  • 15
    • 0030465241 scopus 로고    scopus 로고
    • Characterization of individual polynucleotide molecules using a membrane channel
    • Kasianowicz JJ, Brandin E, Branton D, Deamer DW. Characterization of individual polynucleotide molecules using a membrane channel. Proc Natl Acad Sci U S A 1996;93:13770-3.
    • (1996) Proc Natl Acad Sci U S A , vol.93 , pp. 13770-13773
    • Kasianowicz, J.J.1    Brandin, E.2    Branton, D.3    Deamer, D.W.4
  • 16
    • 0032762996 scopus 로고    scopus 로고
    • Microsecond time-scale discrimination among polycytidylic acid, polyadenylic acid and polyuridylic acid as homopolymers or as segments within single RNA molecules
    • Akeson M, Branton D, Kasianowicz JJ, Brandin E, Deamer DW. Microsecond time-scale discrimination among polycytidylic acid, polyadenylic acid and polyuridylic acid as homopolymers or as segments within single RNA molecules. Biophys J 1999;77:3227-33.
    • (1999) Biophys J , vol.77 , pp. 3227-3233
    • Akeson, M.1    Branton, D.2    Kasianowicz, J.J.3    Brandin, E.4    Deamer, D.W.5
  • 17
    • 49649084921 scopus 로고    scopus 로고
    • Chemical tags facilitate the sensing of individual DNA strands with nanopores
    • Mitchell N, Howorka S. Chemical tags facilitate the sensing of individual DNA strands with nanopores. Angew Chem Int Ed Engl 2008;47:5565-8.
    • (2008) Angew Chem Int Ed Engl , vol.47 , pp. 5565-5568
    • Mitchell, N.1    Howorka, S.2
  • 19
    • 0035107270 scopus 로고    scopus 로고
    • Rapid discrimination among individual DNA hairpin molecules at single-nucleotide resolution using an ion channel
    • Vercoutere W, Winters-Hilt S, Olsen H, Deamer D, Haussler D, Akeson M. Rapid discrimination among individual DNA hairpin molecules at single-nucleotide resolution using an ion channel. Nature Biotechnol 2001;19:248-52.
    • (2001) Nature Biotechnol , vol.19 , pp. 248-252
    • Vercoutere, W.1    Winters-Hilt, S.2    Olsen, H.3    Deamer, D.4    Haussler, D.5    Akeson, M.6
  • 21
    • 58149402384 scopus 로고    scopus 로고
    • Enhanced translocation of single DNA molecules through α-hemolysin nanopores by manipulation of internal charge
    • Maglia G, Rincon Restrepo M, Mikhailova E, Bayley H. Enhanced translocation of single DNA molecules through α-hemolysin nanopores by manipulation of internal charge. Proc Natl Acad Sci U S A 2008;105: 19720-5.
    • (2008) Proc Natl Acad Sci U S A , vol.105 , pp. 19720-19725
    • Maglia, G.1    Rincon Restrepo, M.2    Mikhailova, E.3    Bayley, H.4
  • 23
    • 14844290867 scopus 로고    scopus 로고
    • Recognizing a single base in an individual DNA strand: A step toward nanopore DNA sequencing
    • Ashkenasy N, Sánchez-Quesada J, Bayley H, Ghadiri MR. Recognizing a single base in an individual DNA strand: a step toward nanopore DNA sequencing. Angew Chem Int Ed Engl 2005;44:1401-4.
    • (2005) Angew Chem Int Ed Engl , vol.44 , pp. 1401-1404
    • Ashkenasy, N.1    Sánchez-Quesada, J.2    Bayley, H.3    Ghadiri, M.R.4
  • 24
    • 32244449078 scopus 로고    scopus 로고
    • Toward single molecule DNA sequencing: Direct identification of ribonucleoside and deoxyribonucleoside 5′-monophosphates by using an engineered protein nanopore equipped with a molecular adapter
    • Astier Y, Braha O, Bayley H. Toward single molecule DNA sequencing: direct identification of ribonucleoside and deoxyribonucleoside 5′-monophosphates by using an engineered protein nanopore equipped with a molecular adapter. J Am Chem Soc 2006;128: 1705-10.
    • (2006) J Am Chem Soc , vol.128 , pp. 1705-1710
    • Astier, Y.1    Braha, O.2    Bayley, H.3
  • 25
    • 66049132042 scopus 로고    scopus 로고
    • Single nucleotide discrimination in immobilized DNA oligonucleotides with a biological nanopore
    • Stoddart D, Heron A, Mikhailova E, Maglia G, Bayley H. Single nucleotide discrimination in immobilized DNA oligonucleotides with a biological nanopore. Proc Natl Acad Sci U S A 2009;106:7702-7.
    • (2009) Proc Natl Acad Sci U S A , vol.106 , pp. 7702-7707
    • Stoddart, D.1    Heron, A.2    Mikhailova, E.3    Maglia, G.4    Bayley, H.5
  • 26
    • 70349527955 scopus 로고    scopus 로고
    • Discrimination of single base substitutions in a DNA strand immobilized in a biological nanopore
    • Purnell RF, Schmidt JJ. Discrimination of single base substitutions in a DNA strand immobilized in a biological nanopore. ACS Nano 2009;3:2533-8.
    • (2009) ACS Nano , vol.3 , pp. 2533-2538
    • Purnell, R.F.1    Schmidt, J.J.2
  • 28
    • 74549164354 scopus 로고    scopus 로고
    • Multiple base-recognition sites in a biological nanopore: Two heads are better than one
    • Stoddart D, Maglia G, Mikhailova E, Heron A, Bayley H. Multiple base-recognition sites in a biological nanopore: two heads are better than one. Angew Chem Int Ed 2010;49:556-9.
    • (2010) Angew Chem Int Ed , vol.49 , pp. 556-559
    • Stoddart, D.1    Maglia, G.2    Mikhailova, E.3    Heron, A.4    Bayley, H.5
  • 29
    • 38349169632 scopus 로고    scopus 로고
    • A singlemolecule nanopore device detects DNA polymerase activity with single-nucleotide resolution
    • Cockroft SL, Chu J, Amorin M, Ghadiri MR. A singlemolecule nanopore device detects DNA polymerase activity with single-nucleotide resolution. J AmChem Soc 2008;130:818-20.
    • (2008) J AmChem Soc , vol.130 , pp. 818-820
    • Cockroft, S.L.1    Chu, J.2    Amorin, M.3    Ghadiri, M.R.4
  • 30
    • 78650280872 scopus 로고    scopus 로고
    • Processive replication of single DNA molecules in a nanopore catalyzed by phi29 DNA polymerase
    • Lieberman KR, Cherf GM, Doody MJ, Olasagasti F, Kolodji Y, Akeson M. Processive replication of single DNA molecules in a nanopore catalyzed by phi29 DNA polymerase. J Am Chem Soc 2010;132:17961-72.
    • (2010) J Am Chem Soc , vol.132 , pp. 17961-17972
    • Lieberman, K.R.1    Cherf, G.M.2    Doody, M.J.3    Olasagasti, F.4    Kolodji, Y.5    Akeson, M.6
  • 31
    • 78650483427 scopus 로고    scopus 로고
    • Real-time monitoring of DNA polymerase function and stepwise single-nucleotide DNA strand translocation through a protein nanopore
    • Chu J, Gonzalez-Lopez M, Cockroft SL, Amorin M, Ghadiri MR. Real-time monitoring of DNA polymerase function and stepwise single-nucleotide DNA strand translocation through a protein nanopore. Angew Chem Int Ed 2010; 49:10106-9.
    • (2010) Angew Chem Int Ed , vol.49 , pp. 10106-10109
    • Chu, J.1    Gonzalez-Lopez, M.2    Cockroft, S.L.3    Amorin, M.4    Ghadiri, M.R.5
  • 34
    • 78650005633 scopus 로고    scopus 로고
    • Hybrid pore formation by directed insertion of α-haemolysin into solid-state nanopores
    • Hall AR, Scott A, Rotem D, Mehta KK, Bayley H, Dekker C. Hybrid pore formation by directed insertion of α-haemolysin into solid-state nanopores. Nature Nanotechnol 2010;5:874-7.
    • (2010) Nature Nanotechnol , vol.5 , pp. 874-877
    • Hall, A.R.1    Scott, A.2    Rotem, D.3    Mehta, K.K.4    Bayley, H.5    Dekker, C.6
  • 35
    • 67849083467 scopus 로고    scopus 로고
    • Simultaneous measurement of ionic current and fluorescence from single protein pores
    • Heron AJ, Thompson JR, Cronin B, Bayley H, Wallace MI. Simultaneous measurement of ionic current and fluorescence from single protein pores. J Am Chem Soc 2009;131:1652-3.
    • (2009) J Am Chem Soc , vol.131 , pp. 1652-1653
    • Heron, A.J.1    Thompson, J.R.2    Cronin, B.3    Bayley, H.4    Wallace, M.I.5
  • 36
    • 84875857411 scopus 로고    scopus 로고
    • Noninvasive fetal whole-genome sequencing from maternal plasma: Feasibility studies and future directions
    • Lo YM. Noninvasive fetal whole-genome sequencing from maternal plasma: feasibility studies and future directions. Clin Chem 2013;59:601-3.
    • (2013) Clin Chem , vol.59 , pp. 601-603
    • Lo, Y.M.1
  • 37
    • 84876412824 scopus 로고    scopus 로고
    • Multistep protein unfolding during nanopore translocation
    • Rodriguez-Larrea D, Bayley H. Multistep protein unfolding during nanopore translocation. Nature Nanotechnol 2013;8:288-95.
    • (2013) Nature Nanotechnol , vol.8 , pp. 288-295
    • Rodriguez-Larrea, D.1    Bayley, H.2
  • 38
    • 84875153533 scopus 로고    scopus 로고
    • Unfoldase-mediated protein translocation through an alpha-hemolysin nanopore
    • Nivala J, Marks DB, Akeson M. Unfoldase-mediated protein translocation through an alpha-hemolysin nanopore. Nat Biotechnol 2013;31:247-50.
    • (2013) Nat Biotechnol , vol.31 , pp. 247-250
    • Nivala, J.1    Marks, D.B.2    Akeson, M.3
  • 39
    • 84893839485 scopus 로고    scopus 로고
    • Singlemolecule site-specific detection of protein phosphorylation with a nanopore
    • Rosen CB, Rodriguez-Larrea D, Bayley H. Singlemolecule site-specific detection of protein phosphorylation with a nanopore. Nat Biotechnol 2014;32:179-81.
    • (2014) Nat Biotechnol , vol.32 , pp. 179-181
    • Rosen, C.B.1    Rodriguez-Larrea, D.2    Bayley, H.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.