The diploid genome sequence of an Asian individual

Nature

Volumn 456, Issue 7218, 2008, Pages 60-65

  Wang, Jun ^a,b,c,d   Wang, Wei ^a,c   Li, Ruiqiang ^a,c,d   Li, Yingrui ^a,e,f   Tian, Geng ^a,g   Goodman, Laurie ^a   Fan, Wei ^a   Zhang, Junqing ^a   Li, Jun ^a   Zhang, Juanbin ^a   Guo, Yiran ^a,g   Feng, Binxiao ^a   Li, Heng ^a,h   Lu, Yao ^a   Fang, Xiaodong ^a   Liang, Huiqing ^a   Du, Zhenglin ^a   Li, Dong ^a   Zhao, Yiqing ^a,g   Hu, Yujie ^a,g   Yang, Zhenzhen ^a   Zheng, Hancheng ^a   Hellmann, Ines ⁱ   Inouye, Michael ^h   Pool, John ⁱ   Yi, Xin ^a,g   Zhao, Jing ^a   Duan, Jinjie ^a   Zhou, Yan ^a   Qin, Junjie ^a,g   Ma, Lijia ^a,g   Li, Guoqing ^a   Yang, Zhentao ^a   Zhang, Guojie ^a,g   Yang, Bin ^a   Yu, Chang ^a   Liang, Fang ^a,g   Li, Wenjie ^a   Li, Shaochuan ^a   Li, Dawei ^a   Ni, Peixiang ^a   Ruan, Jue ^a,g   Li, Qibin ^a,g   Zhu, Hongmei ^a   Liu, Dongyuan ^a   Lu, Zhike ^a   Li, Ning ^a,g   Guo, Guangwu ^a,g   Zhang, Jianguo ^a   Ye, Jia ^a   Fang, Lin ^a   Hao, Qin ^a,g   Chen, Quan ^a,e   Liang, Yu ^a,g   Su, Yeyang ^a,g   San, A ^a,g   Ping, Cuo ^a,g   Yang, Shuang ^a   Chen, Fang ^a,g   Li, Li ^a   Zhou, Ke ^a   Zheng, Hongkun ^a,d   Ren, Yuanyuan ^a   Yang, Ling ^a   Gao, Yang ^a,f   Yang, Guohua ^a,b   Li, Zhuo ^a   Feng, Xiaoli ^a   Kristiansen, Karsten ^d   Wong, Gane Ka Shu ^a,j   Nielsen, Rasmus ⁱ   Durbin, Richard ^h   Bolund, Lars ^a,k   Zhang, Xiuqing ^a,f   Li, Songgang ^a,b,e   Yang, Huanming ^a,b,c   Wang, Jian ^a,b,c   more..

^a BGI SHENZHEN   (China)

^b SHENZHEN UNIVERSITY   (China)

^c National Engineering Center for Genomics and Bioinformatics   (China)

^d UNIVERSITY OF SOUTHERN DENMARK   (Denmark)

^e PEKING UNIVERSITY   (China)

^f INSTITUTE OF GEOLOGY AND GEOPHYSICS   (China)

^g UNIVERSITY OF CHINESE ACADEMY OF SCIENCES   (China)

^h WELLCOME TRUST SANGER INSTITUTE   (United Kingdom)

ⁱ UNIVERSITY OF CALIFORNIA   (United States)

^j UNIVERSITY OF ALBERTA   (Canada)

^k AARHUS UNIVERSITY   (Denmark)

more..

Author keywords

[No Author keywords available]

Indexed keywords

DATABASE; GENETIC ANALYSIS; GENOMICS; GENOTYPE; HETEROZYGOSITY; HOMINID; POLYMORPHISM;

ARTICLE; ASIAN; CHINESE; CONSENSUS SEQUENCE; DIPLOIDY; GENE DELETION; GENE DUPLICATION; GENE SEQUENCE; GENOME ANALYSIS; HAPLOTYPE MAP; HETEROZYGOTE; HUMAN; HUMAN GENOME; JAPANESE; PRIORITY JOURNAL; SINGLE NUCLEOTIDE POLYMORPHISM; STRUCTURAL GENOMICS; STRUCTURAL HOMOLOGY;

EID: 55549097849     PISSN: 00280836     EISSN: 14764687     Source Type: Journal    
DOI: 10.1038/nature07484     Document Type: Article

References (20)

1. International Human Genome Sequencing Consortium.. Initial sequencing and analysis of the human genome. Nature 409, 860-921 (2001).
2. Venter, J. C. et al. The sequence of the human genome. Science 291, 1304-1351 (2001).
3. Levy, S. et al. The diploid genome sequence of an individual human. PLoS Biol. 5, e254 (2007).
4. Wheeler, D. A. et al. The complete genome of an individual by massively parallel DNA sequencing. Nature 452, 872-876 (2008).
5. Church, G. M. The personal genome project. Mol. Syst. Biol. 1, doi:10.1038/msb4100040 (2005).
6. Li, R., Li, Y., Kristiansen, K. & Wang, J. SOAP: short oligonucleotide alignment program. Bioinformatics 24, 713-714 (2008).
7. Sherry, S. T. et al. dbSNP: the NCBI database of genetic variation. Nucleic Acids Res. 29, 308-311 (2001).
8. Iafrate, A. J. et al. Detection of large-scale variation in the human genome. Nature Genet. 36, 949-951 (2004).
9. Korbel, J. O. et al. Paired-end mapping reveals extensive structural variation in the human genome. Science 318, 420-426 (2007).
10. Kidd, J. M. et al. Mapping and sequencing of structural variation from eight human genomes. Nature 453, 56-64 (2008).
11. Bovee, D. et al. Closing gaps in the human genome with fosmid resources generated from multiple individuals. Nature Genet. 40, 96-101 (2008).
12. Zerbino, D. R.&Birney, E. Velvet: algorithms for de novo short read assembly using de Bruijn graphs. Genome Res. 18, 821-829 (2008).
13. Stephens, M., Smith, N. J. & Donnelly, P. A new statistical method for haplotype reconstruction from population data. Am. J. Hum. Genet. 68, 978-989 (2001).
14. Tang, H., Peng, J., Wang, P. & Risch, N. J. Estimation of individual admixture: analytical and study design considerations. Genet. Epidemiol. 28, 289-301 (2005).
15. Wright, S. Evolution in Mendelian populations. Genetics 16, 97-159 (1931).
16. Noonan, J. P. et al. Sequencing and analysis of Neanderthal genomic DNA. Science 314, 1113-1118 (2006).
17. Tenesa, A. et al. Recent human effective population size estimated from linkage disequilibrium. Genome Res. 17, 520-526 (2007).
18. McKusick, V. A. Mendelian Inheritance in Man and its online version, OMIM. Am. J. Hum. Genet. 80, 588-604 (2007).
19. Coon, K. D. et al. A high-density whole-genome association study reveals that APOE is the major susceptibility gene for sporadic late-onset Alzheimer's disease. J. Clin. Psychiatry 68, 613-618 (2007).
20. Rogaeva, E. et al. The neuronal sortilin-related receptor SORL1 is genetically associated with Alzheimer disease. Nature Genet. 39, 168-177 (2007).