-
1
-
-
84866747149
-
Next-generation digital information storage in DNA
-
pmid: 22903519
-
G. M. Church, Y. Gao, S. Kosuri, Next-generation digital information storage in DNA. Science 337, 1628 (2012). doi: 10.1126/science.1226355; pmid: 22903519
-
(2012)
Science
, vol.337
, pp. 1628
-
-
Church, G.M.1
Gao, Y.2
Kosuri, S.3
-
2
-
-
53649106195
-
Next-generation DNA sequencing
-
pmid: 18846087
-
J. Shendure, H. Ji, Next-generation DNA sequencing. Nat. Biotechnol. 26, 1135-1145 (2008). doi: 10.1038/nbt1486; pmid: 18846087
-
(2008)
Nat. Biotechnol
, vol.26
, pp. 1135-1145
-
-
Shendure, J.1
Ji, H.2
-
3
-
-
73149084398
-
Making cellular memories
-
pmid: 20085698
-
D. R. Burrill, P. A. Silver, Making cellular memories. Cell 140, 13-18 (2010). doi: 10.1016/j.cell.2009.12.034; pmid: 20085698
-
(2010)
Cell
, vol.140
, pp. 13-18
-
-
Burrill, D.R.1
Silver, P.A.2
-
4
-
-
34047258309
-
Positive-feedback loops as a flexible biological module
-
pmid: 17398098
-
N. T. Ingolia, A. W. Murray, Positive-feedback loops as a flexible biological module. Curr. Biol. 17, 668-677 (2007). doi: 10.1016/ j.cub.2007.03.016; pmid: 17398098
-
(2007)
Curr. Biol
, vol.17
, pp. 668-677
-
-
Ingolia, N.T.1
Murray, A.W.2
-
5
-
-
34548856538
-
Rational design of memory in eukaryotic cells
-
pmid: 17875664
-
C. M. Ajo-Franklin et al., Rational design of memory in eukaryotic cells. Genes Dev. 21, 2271-2276 (2007). doi: 10.1101/gad.1586107; pmid: 17875664
-
(2007)
Genes Dev
, vol.21
, pp. 2271-2276
-
-
Ajo-Franklin, C.M.1
-
6
-
-
84863644753
-
Synthetic memory circuits for tracking human cell fate
-
pmid: 22751502
-
D. R. Burrill, M. C. Inniss, P. M. Boyle, P. A. Silver, Synthetic memory circuits for tracking human cell fate. Genes Dev. 26, 1486-1497 (2012). doi: 10.1101/gad.189035.112; pmid: 22751502
-
(2012)
Genes Dev
, vol.26
, pp. 1486-1497
-
-
Burrill, D.R.1
Inniss, M.C.2
Boyle, P.M.3
Silver, P.A.4
-
7
-
-
0034688174
-
Construction of a genetic toggle switch in Escherichia coli
-
pmid: 10659857
-
T. S. Gardner, C. R. Cantor, J. J. Collins, Construction of a genetic toggle switch in Escherichia coli. Nature 403, 339-342 (2000). doi: 10.1038/35002131; pmid: 10659857
-
(2000)
Nature
, vol.403
, pp. 339-342
-
-
Gardner, T.S.1
Cantor, C.R.2
Collins, J.J.3
-
8
-
-
52649173346
-
Intronically encoded siRNAs improve dynamic range of mammalian gene regulation systems and toggle switch
-
pmid: 18632760
-
D. Greber, M. D. El-Baba, M. Fussenegger, Intronically encoded siRNAs improve dynamic range of mammalian gene regulation systems and toggle switch. Nucleic Acids Res. 36, e101 (2008). doi: 10.1093/nar/gkn443; pmid: 18632760
-
(2008)
Nucleic Acids Res
, vol.36
, pp. e101
-
-
Greber, D.1
El-Baba, M.D.2
Fussenegger, M.3
-
9
-
-
0038241770
-
Development of genetic circuitry exhibiting toggle switch or oscillatory behavior in Escherichia coli
-
pmid: 12787501
-
M. R. Atkinson, M. A. Savageau, J. T. Myers, A. J. Ninfa, Development of genetic circuitry exhibiting toggle switch or oscillatory behavior in Escherichia coli. Cell 113, 597-607 (2003). doi: 10.1016/S0092-8674(03)00346-5; pmid: 12787501
-
(2003)
Cell
, vol.113
, pp. 597-607
-
-
Atkinson, M.R.1
Savageau, M.A.2
Myers, J.T.3
Ninfa, A.J.4
-
10
-
-
2942614884
-
Programmable cells: Interfacing natural and engineered gene networks
-
pmid: 15159530
-
H. Kobayashi et al., Programmable cells: Interfacing natural and engineered gene networks. Proc. Natl. Acad. Sci. U.S.A. 101, 8414-8419 (2004). doi: 10.1073/pnas.0402940101; pmid: 15159530
-
(2004)
Proc. Natl. Acad. Sci. U.S.A.
, vol.101
, pp. 8414-8419
-
-
Kobayashi, H.1
-
11
-
-
22644434444
-
Novel gene switches for targeted and timed expression of proteins of interest
-
pmid: 15925546
-
N. Vilaboa, M. Fenna, J. Munson, S. M. Roberts, R. Voellmy, Novel gene switches for targeted and timed expression of proteins of interest. Mol. Ther. 12, 290-298 (2005). doi: 10.1016/j.ymthe.2005.03.029; pmid: 15925546
-
(2005)
Mol. Ther
, vol.12
, pp. 290-298
-
-
Vilaboa, N.1
Fenna, M.2
Munson, J.3
Roberts, S.M.4
Voellmy, R.5
-
12
-
-
22144452865
-
Hysteresis in a synthetic mammalian gene network
-
pmid: 15972812
-
B. P. Kramer, M. Fussenegger, Hysteresis in a synthetic mammalian gene network. Proc. Natl. Acad. Sci. U.S.A. 102, 9517-9522 (2005). doi: 10.1073/pnas.0500345102; pmid: 15972812
-
(2005)
Proc. Natl. Acad. Sci. U.S.A.
, vol.102
, pp. 9517-9522
-
-
Kramer, B.P.1
Fussenegger, M.2
-
13
-
-
79952214973
-
Synthetic circuit identifies subpopulations with sustained memory of DNA damage
-
pmid: 21363961
-
D. R. Burrill, P. A. Silver, Synthetic circuit identifies subpopulations with sustained memory of DNA damage. Genes Dev. 25, 434-439 (2011). doi: 10.1101/gad.1994911; pmid: 21363961
-
(2011)
Genes Dev
, vol.25
, pp. 434-439
-
-
Burrill, D.R.1
Silver, P.A.2
-
14
-
-
84879520478
-
Engineering of regulated stochastic cell fate determination
-
pmid: 23754391
-
M. Wu et al., Engineering of regulated stochastic cell fate determination. Proc. Natl. Acad. Sci. U.S.A. 110, 10610-10615 (2013). doi: 10.1073/pnas.1305423110; pmid: 23754391
-
(2013)
Proc. Natl. Acad. Sci. U.S.A.
, vol.110
, pp. 10610-10615
-
-
Wu, M.1
-
15
-
-
50949122967
-
Design and construction of a double inversion recombination switch for heritable sequential genetic memory
-
pmid: 18665232
-
T. S. Ham, S. K. Lee, J. D. Keasling, A. P. Arkin, Design and construction of a double inversion recombination switch for heritable sequential genetic memory. PLOS ONE 3, e2815 (2008). doi: 10.1371/journal.pone.0002815; pmid: 18665232
-
(2008)
PLOS ONE
, vol.3
-
-
Ham, T.S.1
Lee, S.K.2
Keasling, J.D.3
Arkin, A.P.4
-
16
-
-
79251595456
-
Construction of a genetic multiplexer to toggle between chemosensory pathways in Escherichia coli
-
pmid: 21185306 12019
-
T. S. Moon et al., Construction of a genetic multiplexer to toggle between chemosensory pathways in Escherichia coli. J. Mol. Biol. 406, 215-227 (2011). doi: 10.1016/j. jmb.2010.12.019; pmid: 21185306
-
(2011)
J. Mol. Biol
, vol.406
, pp. 215-227
-
-
Moon, T.S.1
-
17
-
-
84861865655
-
Rewritable digital data storage in live cells via engineered control of recombination directionality
-
pmid: 22615351
-
J. Bonnet, P. Subsoontorn, D. Endy, Rewritable digital data storage in live cells via engineered control of recombination directionality. Proc. Natl. Acad. Sci. U.S.A. 109, 8884-8889 (2012). doi: 10.1073/pnas.1202344109; pmid: 22615351
-
(2012)
Proc. Natl. Acad. Sci. U.S.A.
, vol.109
, pp. 8884-8889
-
-
Bonnet, J.1
Subsoontorn, P.2
Endy, D.3
-
18
-
-
84925225805
-
Permanent genetic memory with >1-byte capacity
-
pmid: 25344638
-
L. Yang et al., Permanent genetic memory with >1-byte capacity. Nat. Methods 11, 1261-1266 (2014). doi: 10.1038/ nmeth.3147; pmid: 25344638
-
(2014)
Nat. Methods
, vol.11
, pp. 1261-1266
-
-
Yang, L.1
-
19
-
-
84875230351
-
Synthetic circuits integrating logic and memory in living cells
-
pmid: 23396014
-
P. Siuti, J. Yazbek, T. K. Lu, Synthetic circuits integrating logic and memory in living cells. Nat. Biotechnol. 31, 448-452 (2013). doi: 10.1038/nbt.2510; pmid: 23396014
-
(2013)
Nat. Biotechnol
, vol.31
, pp. 448-452
-
-
Siuti, P.1
Yazbek, J.2
Lu, T.K.3
-
20
-
-
84910594404
-
Genomically encoded analog memory with precise in vivo DNA writing in living cell populations
-
pmid: 25395541
-
F. Farzadfard, T. K. Lu, Genomically encoded analog memory with precise in vivo DNA writing in living cell populations. Science 346, 1256272 (2014). doi: 10.1126/science.1256272; pmid: 25395541
-
(2014)
Science
, vol.346
-
-
Farzadfard, F.1
Lu, T.K.2
-
21
-
-
66349125024
-
Synthetic gene networks that count
-
pmid: 19478183
-
A. E. Friedland et al., Synthetic gene networks that count. Science 324, 1199-1202 (2009). doi: 10.1126/science.1172005; pmid: 19478183
-
(2009)
Science
, vol.324
, pp. 1199-1202
-
-
Friedl, A.E.1
-
22
-
-
34047118522
-
CRISPR provides acquired resistance against viruses in prokaryotes
-
pmid: 17379808
-
R. Barrangou et al., CRISPR provides acquired resistance against viruses in prokaryotes. Science 315, 1709-1712 (2007). doi: 10.1126/science.1138140; pmid: 17379808
-
(2007)
Science
, vol.315
, pp. 1709-1712
-
-
Barrangou, R.1
-
23
-
-
84861639567
-
Proteins and DNA elements essential for the CRISPR adaptation process in Escherichia coli
-
pmid: 22402487
-
I. Yosef, M. G. Goren, U. Qimron, Proteins and DNA elements essential for the CRISPR adaptation process in Escherichia coli. Nucleic Acids Res. 40, 5569-5576 (2012). doi: 10.1093/nar/ gks216; pmid: 22402487
-
(2012)
Nucleic Acids Res
, vol.40
, pp. 5569-5576
-
-
Yosef, I.1
Goren, M.G.2
Qimron, U.3
-
24
-
-
84928473578
-
CRISPR adaptation biases explain preference for acquisition of foreign DNA
-
pmid: 25874675
-
A. Levy et al., CRISPR adaptation biases explain preference for acquisition of foreign DNA. Nature 520, 505-510 (2015). doi: 10.1038/nature14302; pmid: 25874675
-
(2015)
Nature
, vol.520
, pp. 505-510
-
-
Levy, A.1
-
25
-
-
84924664059
-
Integrasemediated spacer acquisition during CRISPR-Cas adaptive immunity
-
pmid: 25707795
-
J. K. Nuñez, A. S. Lee, A. Engelman, J. A. Doudna, Integrasemediated spacer acquisition during CRISPR-Cas adaptive immunity. Nature 519, 193-198 (2015). doi: 10.1038/ nature14237; pmid: 25707795
-
(2015)
Nature
, vol.519
, pp. 193-198
-
-
Nuñez, J.K.1
Lee, A.S.2
Engelman, A.3
Doudna, J.A.4
-
26
-
-
84864864464
-
Molecular memory of prior infections activates the CRISPR/Cas adaptive bacterial immunity system
-
pmid: 22781758
-
K. A. Datsenko et al., Molecular memory of prior infections activates the CRISPR/Cas adaptive bacterial immunity system. Nat. Commun. 3, 945 (2012). doi: 10.1038/ncomms1937; pmid: 22781758
-
(2012)
Nat. Commun
, vol.3
, pp. 945
-
-
Datsenko, K.A.1
-
27
-
-
84866043524
-
The highly dynamic CRISPR1 system of Streptococcus agalactiae controls the diversity of its mobilome
-
pmid: 22834929
-
M. J. Lopez-Sanchez et al., The highly dynamic CRISPR1 system of Streptococcus agalactiae controls the diversity of its mobilome. Mol. Microbiol. 85, 1057-1071 (2012). doi: 10.1111/ j.1365-2958.2012.08172.x; pmid: 22834929
-
(2012)
Mol. Microbiol
, vol.85
, pp. 1057-1071
-
-
Lopez-Sanchez, M.J.1
-
28
-
-
84859192030
-
Ultrafast evolution and loss of CRISPRs following a host shift in a novel wildlife pathogen, Mycoplasma gallisepticum
-
pmid: 22346765
-
N. F. Delaney et al., Ultrafast evolution and loss of CRISPRs following a host shift in a novel wildlife pathogen, Mycoplasma gallisepticum. PLOS Genet. 8, e1002511 (2012). doi: 10.1371/ journal.pgen.1002511; pmid: 22346765
-
(2012)
PLOS Genet
, vol.8
-
-
Delaney, N.F.1
-
29
-
-
38949214103
-
Diversity, activity, and evolution of CRISPR loci in Streptococcus thermophilus
-
pmid: 18065539
-
P. Horvath et al., Diversity, activity, and evolution of CRISPR loci in Streptococcus thermophilus. J. Bacteriol. 190, 1401-1412 (2008). doi: 10.1128/JB.01415-07; pmid: 18065539
-
(2008)
J. Bacteriol
, vol.190
, pp. 1401-1412
-
-
Horvath, P.1
-
30
-
-
78650244167
-
Dynamic properties of the Sulfolobus CRISPR/Cas and CRISPR/Cmr systems when challenged with vector-borne viral and plasmid genes and protospacers
-
pmid: 21166892
-
S. Gudbergsdottir et al., Dynamic properties of the Sulfolobus CRISPR/Cas and CRISPR/Cmr systems when challenged with vector-borne viral and plasmid genes and protospacers. Mol. Microbiol. 79, 35-49 (2011). doi: 10.1111/j.1365- 2958.2010.07452.x; pmid: 21166892
-
(2011)
Mol. Microbiol
, vol.79
, pp. 35-49
-
-
Gudbergsdottir, S.1
-
31
-
-
84883338164
-
DNA motifs determining the efficiency of adaptation into the Escherichia coli CRISPR array
-
pmid: 23940313
-
I. Yosef et al., DNA motifs determining the efficiency of adaptation into the Escherichia coli CRISPR array. Proc. Natl. Acad. Sci. U.S.A. 110, 14396-14401 (2013). doi: 10.1073/ pnas.1300108110; pmid: 23940313
-
(2013)
Proc. Natl. Acad. Sci. U.S.A.
, vol.110
, pp. 14396-14401
-
-
Yosef, I.1
-
32
-
-
84879021475
-
High-throughput analysis of type I-E CRISPR/Cas spacer acquisition in E. Coli
-
pmid: 23619643
-
E. Savitskaya, E. Semenova, V. Dedkov, A. Metlitskaya, K. Severinov, High-throughput analysis of type I-E CRISPR/Cas spacer acquisition in E. coli. RNA Biol. 10, 716-725 (2013). doi: 10.4161/rna.24325; pmid: 23619643
-
(2013)
RNA Biol
, vol.10
, pp. 716-725
-
-
Savitskaya, E.1
Semenova, E.2
Dedkov, V.3
Metlitskaya, A.4
Severinov, K.5
-
33
-
-
64049118040
-
Short motif sequences determine the targets of the prokaryotic CRISPR defence system
-
pmid: 19246744
-
F. J. M. Mojica, C. Díez-Villaseñor, J. García-Martínez, C. Almendros, Short motif sequences determine the targets of the prokaryotic CRISPR defence system. Microbiology 155, 733-740 (2009). doi: 10.1099/mic.0.023960-0; pmid: 19246744
-
(2009)
Microbiology
, vol.155
, pp. 733-740
-
-
Mojica, F.J.M.1
Díez-Villaseñor, C.2
García-Martínez, J.3
Almendros, C.4
-
34
-
-
84941907747
-
Intrinsic sequence specificity of the Cas1 integrase directs new spacer acquisition
-
pmid: 26284603
-
C. Rollie, S. Schneider, A. S. Brinkmann, E. L. Bolt, M. F. White, Intrinsic sequence specificity of the Cas1 integrase directs new spacer acquisition. eLife 4, e08716 (2015). doi: 10.7554/ eLife.08716; pmid: 26284603
-
(2015)
ELife
, vol.4
, pp. e08716
-
-
Rollie, C.1
Schneider, S.2
Brinkmann, A.S.3
Bolt, E.L.4
White, M.F.5
-
35
-
-
84901307358
-
Pervasive generation of oppositely oriented spacers during CRISPR adaptation
-
pmid: 24728991
-
S. Shmakov et al., Pervasive generation of oppositely oriented spacers during CRISPR adaptation. Nucleic Acids Res. 42, 5907-5916 (2014). doi: 10.1093/nar/gku226; pmid: 24728991
-
(2014)
Nucleic Acids Res
, vol.42
, pp. 5907-5916
-
-
Shmakov, S.1
-
36
-
-
84902533278
-
Unravelling the structural and mechanistic basis of CRISPRCas systems
-
pmid: 24909109
-
J. van der Oost, E. R. Westra, R. N. Jackson, B. Wiedenheft, Unravelling the structural and mechanistic basis of CRISPRCas systems. Nat. Rev. Microbiol. 12, 479-492 (2014). doi: 10.1038/nrmicro3279; pmid: 24909109
-
(2014)
Nat. Rev. Microbiol
, vol.12
, pp. 479-492
-
-
Oost Der Van, J.1
Westra, E.R.2
Jackson, R.N.3
Wiedenheft, B.4
-
37
-
-
84902010986
-
Cas1-Cas2 complex formation mediates spacer acquisition during CRISPR-Cas adaptive immunity
-
pmid: 24793649
-
J. K. Nuñez et al., Cas1-Cas2 complex formation mediates spacer acquisition during CRISPR-Cas adaptive immunity. Nat. Struct. Mol. Biol. 21, 528-534 (2014). doi: 10.1038/ nsmb.2820; pmid: 24793649
-
(2014)
Nat. Struct. Mol. Biol
, vol.21
, pp. 528-534
-
-
Nuñez, J.K.1
-
38
-
-
84946130269
-
Structural and mechanistic basis of PAM-dependent spacer acquisition in CRISPR-Cas systems
-
pmid: 26478180
-
J. Wang et al., Structural and mechanistic basis of PAM-dependent spacer acquisition in CRISPR-Cas systems. Cell 163, 840-853 (2015). doi: 10.1016/j.cell.2015.10.008; pmid: 26478180
-
(2015)
Cell
, vol.163
, pp. 840-853
-
-
Wang, J.1
-
39
-
-
84947495037
-
Foreign DNA capture during CRISPR-Cas adaptive immunity
-
pmid: 26503043
-
J. K. Nuñez, L. B. Harrington, P. J. Kranzusch, A. N. Engelman, J. A. Doudna, Foreign DNA capture during CRISPR-Cas adaptive immunity. Nature 527, 535-538 (2015). doi: 10.1038/ nature15760; pmid: 26503043
-
(2015)
Nature
, vol.527
, pp. 535-538
-
-
Nuñez, J.K.1
Harrington, L.B.2
Kranzusch, P.J.3
Engelman, A.N.4
Doudna, J.A.5
-
40
-
-
75849154794
-
CRISPI: A CRISPR interactive database
-
pmid: 19846435
-
C. Rousseau, M. Gonnet, M. Le Romancer, J. Nicolas, CRISPI: A CRISPR interactive database. Bioinformatics 25, 3317-3318 (2009). doi: 10.1093/bioinformatics/btp586; pmid: 19846435
-
(2009)
Bioinformatics
, vol.25
, pp. 3317-3318
-
-
Rousseau, C.1
Gonnet, M.2
Le Romancer, M.3
Nicolas, J.4
-
41
-
-
84959419241
-
Direct CRISPR spacer acquisition from RNA by a natural reverse transcriptase-Cas1 fusion protein
-
pmid: 26917774
-
S. Silas et al., Direct CRISPR spacer acquisition from RNA by a natural reverse transcriptase-Cas1 fusion protein. Science 351, aad4234 (2016). doi: 10.1126/science.aad4234; pmid: 26917774
-
(2016)
Science
, vol.351
-
-
Silas, S.1
-
42
-
-
84886256813
-
Physical principles for scalable neural recording
-
pmid: 24187539
-
A. H. Marblestone et al., Physical principles for scalable neural recording. Front. Comput. Neurosci. 7, 137 (2013). doi: 10.3389/fncom.2013.00137; pmid: 24187539
-
(2013)
Front. Comput. Neurosci
, vol.7
, pp. 137
-
-
Marblestone, A.H.1
-
43
-
-
84875659006
-
Nanotools for neuroscience and brain activity mapping
-
pmid: 23514423
-
A. P. Alivisatos et al., Nanotools for neuroscience and brain activity mapping. ACS Nano 7, 1850-1866 (2013). doi: 10.1021/ nn4012847; pmid: 23514423
-
(2013)
ACS Nano
, vol.7
, pp. 1850-1866
-
-
Alivisatos, A.P.1
-
44
-
-
84941242926
-
Synthetic biosensors for precise gene control and real-time monitoring of metabolites
-
pmid: 26152303
-
J. K. Rogers et al., Synthetic biosensors for precise gene control and real-time monitoring of metabolites. Nucleic Acids Res. 43, 7648-7660 (2015). doi: 10.1093/nar/gkv616; pmid: 26152303
-
(2015)
Nucleic Acids Res
, vol.43
, pp. 7648-7660
-
-
Rogers, J.K.1
-
45
-
-
0028782130
-
Estimating terrestrial biodiversity through extrapolation
-
pmid: 7972351
-
R. K. Colwell, J. A. Coddington, Estimating terrestrial biodiversity through extrapolation. Philos. Trans. R. Soc. London B Biol. Sci. 345, 101-118 (1994). doi: 10.1098/ rstb.1994.0091; pmid: 7972351
-
(1994)
Philos. Trans. R. Soc. London B Biol. Sci
, vol.345
, pp. 101-118
-
-
Colwell, R.K.1
Coddington, J.A.2
-
46
-
-
84888872901
-
PLogo: A probabilistic approach to visualizing sequence motifs
-
pmid: 24097270
-
J. P. O'Shea et al., pLogo: A probabilistic approach to visualizing sequence motifs. Nat. Methods 10, 1211-1212 (2013). doi: 10.1038/nmeth.2646; pmid: 24097270
-
(2013)
Nat. Methods
, vol.10
, pp. 1211-1212
-
-
O'Shea, J.P.1
|