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Volumn 30, Issue 4, 2012, Pages 349-353

Reading DNA at single-nucleotide resolution with a mutant MspA nanopore and phi29 DNA polymerase

Author keywords

[No Author keywords available]

Indexed keywords

CURRENT TRACES; DIRECT SEQUENCING; DNA TRANSLOCATION; HIGH SENSITIVITY; IONIC CURRENT; MYCOBACTERIUM SMEGMATIS; PHI29 DNA POLYMERASE; PROTEIN PORES; SINGLE DNA MOLECULES;

EID: 84859629295     PISSN: 10870156     EISSN: 15461696     Source Type: Journal    
DOI: 10.1038/nbt.2171     Document Type: Article
Times cited : (767)

References (23)
  • 1
    • 0030465241 scopus 로고    scopus 로고
    • Characterization of individual polynucleotide molecules using a membrane channel
    • Kasianowicz, J.J., Brandin, E., Branton, D. & Deamer, D.W. Characterization of individual polynucleotide molecules using a membrane channel. Proc. Natl. Acad. Sci. USA 93, 13770-13773 (1996).
    • (1996) Proc. Natl. Acad. Sci. USA , vol.93 , pp. 13770-13773
    • Kasianowicz, J.J.1    Brandin, E.2    Branton, D.3    Deamer, D.W.4
  • 2
    • 53649108801 scopus 로고    scopus 로고
    • The potential and challenges of nanopore sequencing
    • Branton, D. et al. The potential and challenges of nanopore sequencing. Nat. Biotechnol. 26, 1146-1153 (2008).
    • (2008) Nat. Biotechnol. , vol.26 , pp. 1146-1153
    • Branton, D.1
  • 4
    • 84859175970 scopus 로고    scopus 로고
    • Automated forward and reverse ratcheting of DNA in a nanopore at 5-Å precision
    • advance online publication, doi:10.1038/nbt.2147 14 February
    • Cherf, G.M. et al. Automated forward and reverse ratcheting of DNA in a nanopore at 5-Å precision. Nat. Biotechnol. advance online publication, doi:10.1038/nbt.2147 (14 February 2012).
    • (2012) Nat. Biotechnol.
    • Cherf, G.M.1
  • 5
    • 77958487369 scopus 로고    scopus 로고
    • Identification of epigenetic DNA modifications with a protein nanopore
    • Wallace, E.V.B. et al. Identification of epigenetic DNA modifications with a protein nanopore. Chem. Commun. (Camb.) 46, 8195-8197 (2010).
    • (2010) Chem. Commun. (Camb.) , vol.46 , pp. 8195-8197
    • Wallace, E.V.B.1
  • 6
    • 77958014348 scopus 로고    scopus 로고
    • Nanopore DNA sequencing with MspA
    • Derrington, I.M. et al. Nanopore DNA sequencing with MspA. Proc. Natl. Acad. Sci. USA 107, 16060-16065 (2010).
    • (2010) Proc. Natl. Acad. Sci. USA , vol.107 , pp. 16060-16065
    • Derrington, I.M.1
  • 7
    • 66049132042 scopus 로고    scopus 로고
    • Single-nucleotide discrimination in immobilized DNA oligonucleotides with a biological nanopore
    • Stoddart, D., Heron, A.J., Mikhailova, E., Maglia, G. & Bayley, H. Single-nucleotide discrimination in immobilized DNA oligonucleotides with a biological nanopore. Proc. Natl. Acad. Sci. USA 106, 7702-7707 (2009).
    • (2009) Proc. Natl. Acad. Sci. USA , vol.106 , pp. 7702-7707
    • Stoddart, D.1    Heron, A.J.2    Mikhailova, E.3    Maglia, G.4    Bayley, H.5
  • 8
    • 54549099396 scopus 로고    scopus 로고
    • Nucleotide identification and orientation discrimination of DNA homopolymers immobilized in a protein nanopore
    • Purnell, R.F., Mehta, K.K. & Schmidt, J.J. Nucleotide identification and orientation discrimination of DNA homopolymers immobilized in a protein nanopore. Nano Lett. 8, 3029-3034 (2008).
    • (2008) Nano Lett. , vol.8 , pp. 3029-3034
    • Purnell, R.F.1    Mehta, K.K.2    Schmidt, J.J.3
  • 9
    • 70349527955 scopus 로고    scopus 로고
    • Discrimination of single base substitutions in a DNA strand immobilized in a biological nanopore
    • Purnell, R.F. & Schmidt, J.J. Discrimination of single base substitutions in a DNA strand immobilized in a biological nanopore. ACS Nano 3, 2533-2538 (2009).
    • (2009) ACS Nano , vol.3 , pp. 2533-2538
    • Purnell, R.F.1    Schmidt, J.J.2
  • 10
    • 78650280872 scopus 로고    scopus 로고
    • Processive replication of single DNA molecules in a nanopore catalyzed by phi29 DNA polymerase
    • Lieberman, K.R. et al. Processive replication of single DNA molecules in a nanopore catalyzed by phi29 DNA polymerase. J. Am. Chem. Soc. 132, 17961-17972 (2010).
    • (2010) J. Am. Chem. Soc. , vol.132 , pp. 17961-17972
    • Lieberman, K.R.1
  • 11
    • 0032881596 scopus 로고    scopus 로고
    • Cloning of the MspA gene encoding a porin from Mycobacterium smegmatis
    • Niederweis, M. et al. Cloning of the MspA gene encoding a porin from Mycobacterium smegmatis. Mol. Microbiol. 33, 933-945 (1999).
    • (1999) Mol. Microbiol. , vol.33 , pp. 933-945
    • Niederweis, M.1
  • 12
    • 1242352009 scopus 로고    scopus 로고
    • The structure of a mycobacterial outer-membrane channel
    • Faller, M., Niederweis, M. & Schulz, G.E. The structure of a mycobacterial outer-membrane channel. Science 303, 1189-1192 (2004).
    • (2004) Science , vol.303 , pp. 1189-1192
    • Faller, M.1    Niederweis, M.2    Schulz, G.E.3
  • 15
    • 67651202717 scopus 로고    scopus 로고
    • Mapping the position of DNA polymerase-bound DNA templates in a nanopore at 5 angstrom resolution
    • Gyarfas, B. et al. Mapping the position of DNA polymerase-bound DNA templates in a nanopore at 5 angstrom resolution. ACS Nano 3, 1457-1466 (2009).
    • (2009) ACS Nano , vol.3 , pp. 1457-1466
    • Gyarfas, B.1
  • 16
    • 66949130341 scopus 로고    scopus 로고
    • Electronic control of DNA polymerase binding and unbinding to single DNA molecules
    • Wilson, N.A. et al. Electronic control of DNA polymerase binding and unbinding to single DNA molecules. ACS Nano 3, 995-1003 (2009).
    • (2009) ACS Nano , vol.3 , pp. 995-1003
    • Wilson, N.A.1
  • 17
    • 67749111706 scopus 로고    scopus 로고
    • Specific nucleotide binding and rebinding to individual DNA polymerase complexes captured on a nanopore
    • Hurt, N., Wang, H.Y., Akeson, M. & Lieberman, K.R. Specific nucleotide binding and rebinding to individual DNA polymerase complexes captured on a nanopore. J. Am. Chem. Soc. 131, 3772-3778 (2009).
    • (2009) J. Am. Chem. Soc. , vol.131 , pp. 3772-3778
    • Hurt, N.1    Wang, H.Y.2    Akeson, M.3    Lieberman, K.R.4
  • 18
    • 35948947371 scopus 로고    scopus 로고
    • Sequence-specific detection of individual DNA polymerase complexes in real time using a nanopore
    • Benner, S. et al. Sequence-specific detection of individual DNA polymerase complexes in real time using a nanopore. Nat. Nanotechnol. 2, 718-724 (2007).
    • (2007) Nat. Nanotechnol. , vol.2 , pp. 718-724
    • Benner, S.1
  • 19
    • 0029879312 scopus 로고    scopus 로고
    • Relating structure to function in phi29 DNA polymerase
    • Blanco, L. & Salas, M. Relating structure to function in phi29 DNA polymerase. J. Biol. Chem. 271, 8509-8512 (1996).
    • (1996) J. Biol. Chem. , vol.271 , pp. 8509-8512
    • Blanco, L.1    Salas, M.2
  • 21
    • 70349213246 scopus 로고    scopus 로고
    • Proofreading dynamics of a processive DNA polymerase
    • Ibarra, B. et al. Proofreading dynamics of a processive DNA polymerase. EMBO J. 28, 2794-2802 (2009).
    • (2009) EMBO J. , vol.28 , pp. 2794-2802
    • Ibarra, B.1
  • 22
    • 0024335104 scopus 로고
    • Highly efficient DNA Synthesis by phage phi29 DNA polymerase
    • Blanco, L. et al. Highly efficient DNA Synthesis by phage phi29 DNA polymerase. J. Biol. Chem. 264, 8935-8940 (1989).
    • (1989) J. Biol. Chem. , vol.264 , pp. 8935-8940
    • Blanco, L.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.