-
1
-
-
84961216367
-
Global agricultural intensification during climate change: a role for genomics
-
Abberton, M., Batley, J., Bentley, A., Bryant, J., Cai, H., Cockram, J., Costa de Oliveira, A., Cseke, L.J., Dempewolf, H., De Pace, C., et al. Global agricultural intensification during climate change: a role for genomics. Plant Biotechnol. J. 14 (2015), 1095–1098.
-
(2015)
Plant Biotechnol. J.
, vol.14
, pp. 1095-1098
-
-
Abberton, M.1
Batley, J.2
Bentley, A.3
Bryant, J.4
Cai, H.5
Cockram, J.6
Costa de Oliveira, A.7
Cseke, L.J.8
Dempewolf, H.9
De Pace, C.10
-
2
-
-
84979881260
-
RAD capture (rapture): flexible and efficient sequence-based genotyping
-
Ali, O.A., O'Rourke, S.M., Amish, S.J., Meek, M.H., Luikart, G., Jeffres, C., Miller, M.R., RAD capture (rapture): flexible and efficient sequence-based genotyping. Genetics 202 (2016), 389–400.
-
(2016)
Genetics
, vol.202
, pp. 389-400
-
-
Ali, O.A.1
O'Rourke, S.M.2
Amish, S.J.3
Meek, M.H.4
Luikart, G.5
Jeffres, C.6
Miller, M.R.7
-
3
-
-
84875633402
-
Discovery and development of exome-based, co-dominant single nucleotide polymorphism markers in hexaploid wheat (Triticum aestivum L.)
-
Allen, A.M., Barker, G.L.A., Wilkinson, P., Burridge, A., Winfield, M., Coghill, J., Uauy, C., Griffiths, S., Jack, P., Berry, S., et al. Discovery and development of exome-based, co-dominant single nucleotide polymorphism markers in hexaploid wheat (Triticum aestivum L.). Plant Biotechnol. J. 11 (2013), 279–295.
-
(2013)
Plant Biotechnol. J.
, vol.11
, pp. 279-295
-
-
Allen, A.M.1
Barker, G.L.A.2
Wilkinson, P.3
Burridge, A.4
Winfield, M.5
Coghill, J.6
Uauy, C.7
Griffiths, S.8
Jack, P.9
Berry, S.10
-
4
-
-
85005808145
-
Characterization of a Wheat Breeders' Array suitable for high-throughput SNP genotyping of global accessions of hexaploid bread wheat (Triticum aestivum)
-
Allen, A.M., Winfield, M.O., Burridge, A.J., Downie, R.C., Benbow, H.R., Barker, G.L., Wilkinson, P.A., Coghill, J., Waterfall, C., Davassi, A., et al. Characterization of a Wheat Breeders' Array suitable for high-throughput SNP genotyping of global accessions of hexaploid bread wheat (Triticum aestivum). Plant Biotechnol. J. 15 (2017), 390–401.
-
(2017)
Plant Biotechnol. J.
, vol.15
, pp. 390-401
-
-
Allen, A.M.1
Winfield, M.O.2
Burridge, A.J.3
Downie, R.C.4
Benbow, H.R.5
Barker, G.L.6
Wilkinson, P.A.7
Coghill, J.8
Waterfall, C.9
Davassi, A.10
-
5
-
-
79953304894
-
Multiplexed shotgun genotyping for rapid and efficient genetic mapping
-
Andolfatto, P., Davison, D., Erezyilmaz, D., Hu, T.T., Mast, J., Sunayama-Morita, T., Stern, D.L., Multiplexed shotgun genotyping for rapid and efficient genetic mapping. Genome Res. 21 (2011), 610–617.
-
(2011)
Genome Res.
, vol.21
, pp. 610-617
-
-
Andolfatto, P.1
Davison, D.2
Erezyilmaz, D.3
Hu, T.T.4
Mast, J.5
Sunayama-Morita, T.6
Stern, D.L.7
-
6
-
-
84867901232
-
De novo assembly of the pepper transcriptome (Capsicum annuum): a benchmark for in silico discovery of SNPs, SSRs and candidate genes
-
Ashrafi, H., Hill, T., Stoffel, K., Kozik, A., Yao, J., Chin-Wo, S.R., Van Deynze, A., De novo assembly of the pepper transcriptome (Capsicum annuum): a benchmark for in silico discovery of SNPs, SSRs and candidate genes. BMC Genomics, 13, 2012, 571.
-
(2012)
BMC Genomics
, vol.13
, pp. 571
-
-
Ashrafi, H.1
Hill, T.2
Stoffel, K.3
Kozik, A.4
Yao, J.5
Chin-Wo, S.R.6
Van Deynze, A.7
-
7
-
-
84855413798
-
SNP discovery and development of a high-density genotyping array for sunflower
-
Bachlava, E., Taylor, C.A., Tang, S., Bowers, J.E., Mandel, J.R., Burke, J.M., Knapp, S.J., SNP discovery and development of a high-density genotyping array for sunflower. PLoS One, 7, 2012, e29814.
-
(2012)
PLoS One
, vol.7
, pp. e29814
-
-
Bachlava, E.1
Taylor, C.A.2
Tang, S.3
Bowers, J.E.4
Mandel, J.R.5
Burke, J.M.6
Knapp, S.J.7
-
8
-
-
54449098752
-
Rapid SNP discovery and genetic mapping using sequenced RAD markers
-
Baird, N.A., Etter, P.D., Atwood, T.S., Currey, M.C., Shiver, A.L., Lewis, Z.A., Selker, E.U., Cresko, W.A., Johnson, E.A., Rapid SNP discovery and genetic mapping using sequenced RAD markers. PLoS One, 3, 2008, e3376.
-
(2008)
PLoS One
, vol.3
, pp. e3376
-
-
Baird, N.A.1
Etter, P.D.2
Atwood, T.S.3
Currey, M.C.4
Shiver, A.L.5
Lewis, Z.A.6
Selker, E.U.7
Cresko, W.A.8
Johnson, E.A.9
-
9
-
-
84947018754
-
Next generation breeding
-
Barabaschi, D., Tondelli, A., Desiderio, F., Volante, A., Vaccino, P., Valè, G., Cattivelli, L., Next generation breeding. Plant Sci. 242 (2016), 3–13.
-
(2016)
Plant Sci.
, vol.242
, pp. 3-13
-
-
Barabaschi, D.1
Tondelli, A.2
Desiderio, F.3
Volante, A.4
Vaccino, P.5
Valè, G.6
Cattivelli, L.7
-
10
-
-
84925400229
-
Development and preliminary evaluation of a 90 K Axiom® SNP array for the allo-octoploid cultivated strawberry Fragaria× ananassa
-
Bassil, N.V., Davis, T.M., Zhang, H., Ficklin, S., Mittmann, M., Webster, T., Mahoney, L., Wood, D., Alperin, E.S., Rosyara, U.R., et al. Development and preliminary evaluation of a 90 K Axiom® SNP array for the allo-octoploid cultivated strawberry Fragaria× ananassa. BMC Genomics, 16, 2015, 155.
-
(2015)
BMC Genomics
, vol.16
, pp. 155
-
-
Bassil, N.V.1
Davis, T.M.2
Zhang, H.3
Ficklin, S.4
Mittmann, M.5
Webster, T.6
Mahoney, L.7
Wood, D.8
Alperin, E.S.9
Rosyara, U.R.10
-
11
-
-
84959145150
-
The application of genomics and bioinformatics to accelerate crop improvement in a changing climate
-
Batley, J., Edwards, D., The application of genomics and bioinformatics to accelerate crop improvement in a changing climate. Curr. Opin. Plant Biol. 30 (2016), 78–81.
-
(2016)
Curr. Opin. Plant Biol.
, vol.30
, pp. 78-81
-
-
Batley, J.1
Edwards, D.2
-
12
-
-
85013218379
-
Towards a whole-genome sequence for rye (Secale cereale L.)
-
Bauer, E., Schmutzer, T., Barilar, I., Mascher, M., Gundlach, H., Martis, M.M., Twardziok, S.O., Hackauf, B., Gordillo, A., Wilde, P., et al. Towards a whole-genome sequence for rye (Secale cereale L.). Plant J. 89 (2017), 853–869.
-
(2017)
Plant J.
, vol.89
, pp. 853-869
-
-
Bauer, E.1
Schmutzer, T.2
Barilar, I.3
Mascher, M.4
Gundlach, H.5
Martis, M.M.6
Twardziok, S.O.7
Hackauf, B.8
Gordillo, A.9
Wilde, P.10
-
13
-
-
75849136053
-
Allelic genome structural variations in maize detected by array comparative genome hybridization
-
Belo, A., Beatty, M.K., Hondred, D., Fengler, K.A., Li, B., Rafalski, A., Allelic genome structural variations in maize detected by array comparative genome hybridization. Theor. Appl. Genet. 120 (2010), 355–367.
-
(2010)
Theor. Appl. Genet.
, vol.120
, pp. 355-367
-
-
Belo, A.1
Beatty, M.K.2
Hondred, D.3
Fengler, K.A.4
Li, B.5
Rafalski, A.6
-
14
-
-
64749088316
-
High-throughput single nucleotide polymorphism genotyping in wheat (Triticum spp.)
-
Berard, A., Le Paslier, M.C., Dardevet, M., Exbrayat-Vinson, F., Bonnin, I., Cenci, A., Haudry, A., Brunel, D., Ravel, C., High-throughput single nucleotide polymorphism genotyping in wheat (Triticum spp.). Plant Biotechnol. J. 7 (2009), 364–374.
-
(2009)
Plant Biotechnol. J.
, vol.7
, pp. 364-374
-
-
Berard, A.1
Le Paslier, M.C.2
Dardevet, M.3
Exbrayat-Vinson, F.4
Bonnin, I.5
Cenci, A.6
Haudry, A.7
Brunel, D.8
Ravel, C.9
-
15
-
-
84957110217
-
Using next generation sequencing for multiplexed trait-linked markers in wheat
-
Bernardo, A., Wang, S., St Amand, P., Bai, G., Using next generation sequencing for multiplexed trait-linked markers in wheat. PLoS One, 10, 2015, e0143890.
-
(2015)
PLoS One
, vol.10
, pp. e0143890
-
-
Bernardo, A.1
Wang, S.2
St Amand, P.3
Bai, G.4
-
16
-
-
84988937725
-
Bandwagons I, too, have known
-
Bernardo, R., Bandwagons I, too, have known. Theor. Appl. Genet. 129 (2016), 2323–2332.
-
(2016)
Theor. Appl. Genet.
, vol.129
, pp. 2323-2332
-
-
Bernardo, R.1
-
17
-
-
84883828874
-
Genomics reveals new landscapes for crop improvement
-
Bevan, M.W., Uauy, C., Genomics reveals new landscapes for crop improvement. Genome Biol., 14, 2013, 206.
-
(2013)
Genome Biol.
, vol.14
, pp. 206
-
-
Bevan, M.W.1
Uauy, C.2
-
18
-
-
85015433694
-
Genomic innovation for crop improvement
-
Bevan, M.W., Uauy, C., Wulff, B.B., Zhou, J., Krasileva, K., Clark, M.D., Genomic innovation for crop improvement. Nature 543 (2017), 346–354.
-
(2017)
Nature
, vol.543
, pp. 346-354
-
-
Bevan, M.W.1
Uauy, C.2
Wulff, B.B.3
Zhou, J.4
Krasileva, K.5
Clark, M.D.6
-
19
-
-
84962850091
-
Development and validation of the Axiom((R)) Apple480K SNP genotyping array
-
Bianco, L., Cestaro, A., Linsmith, G., Muranty, H., Denance, C., Theron, A., Poncet, C., Micheletti, D., Kerschbamer, E., Di Pierro, E.A., et al. Development and validation of the Axiom((R)) Apple480K SNP genotyping array. Plant J. 86 (2016), 62–74.
-
(2016)
Plant J.
, vol.86
, pp. 62-74
-
-
Bianco, L.1
Cestaro, A.2
Linsmith, G.3
Muranty, H.4
Denance, C.5
Theron, A.6
Poncet, C.7
Micheletti, D.8
Kerschbamer, E.9
Di Pierro, E.A.10
-
20
-
-
84907815005
-
Development and validation of a 20K single nucleotide polymorphism (SNP) whole genome genotyping array for apple (Malus × domestica Borkh)
-
Bianco, L., Cestaro, A., Sargent, D., Banchi, E., Derdak, S., Guardo, N., Development and validation of a 20K single nucleotide polymorphism (SNP) whole genome genotyping array for apple (Malus × domestica Borkh). PLoS One, 9, 2014, e110377.
-
(2014)
PLoS One
, vol.9
, pp. e110377
-
-
Bianco, L.1
Cestaro, A.2
Sargent, D.3
Banchi, E.4
Derdak, S.5
Guardo, N.6
-
21
-
-
84942193423
-
Genetic–geographic correlation revealed across a broad European ecotypic sample of perennial ryegrass (Lolium perenne) using array-based SNP genotyping
-
Blackmore, T., Thomas, I., McMahon, R., Powell, W., Hegarty, M., Genetic–geographic correlation revealed across a broad European ecotypic sample of perennial ryegrass (Lolium perenne) using array-based SNP genotyping. Theor. Appl. Genet. 128 (2015), 1917–1932.
-
(2015)
Theor. Appl. Genet.
, vol.128
, pp. 1917-1932
-
-
Blackmore, T.1
Thomas, I.2
McMahon, R.3
Powell, W.4
Hegarty, M.5
-
22
-
-
84983378111
-
Genetic architecture of male floral traits required for hybrid wheat breeding
-
Boeven, P.H.G., Longin, C.F.H., Leiser, W.L., Kollers, S., Ebmeyer, E., Würschum, T., Genetic architecture of male floral traits required for hybrid wheat breeding. Theor. Appl. Genet. 129 (2016), 2343–2357.
-
(2016)
Theor. Appl. Genet.
, vol.129
, pp. 2343-2357
-
-
Boeven, P.H.G.1
Longin, C.F.H.2
Leiser, W.L.3
Kollers, S.4
Ebmeyer, E.5
Würschum, T.6
-
23
-
-
0033783703
-
Ending world hunger. The promise of biotechnology and the threat of antiscience zealotry
-
Borlaug, N.E., Ending world hunger. The promise of biotechnology and the threat of antiscience zealotry. Plant Physiol. 124 (2000), 487–490.
-
(2000)
Plant Physiol.
, vol.124
, pp. 487-490
-
-
Borlaug, N.E.1
-
24
-
-
84946492178
-
Genomics as the key to unlocking the polyploid potential of wheat
-
Borrill, P., Adamski, N., Uauy, C., Genomics as the key to unlocking the polyploid potential of wheat. New Phytol. 208 (2015), 1008–1022.
-
(2015)
New Phytol.
, vol.208
, pp. 1008-1022
-
-
Borrill, P.1
Adamski, N.2
Uauy, C.3
-
25
-
-
84961210276
-
Genomics of crop wild relatives: expanding the gene pool for crop improvement
-
Brozynska, M., Furtado, A., Henry, R.J., Genomics of crop wild relatives: expanding the gene pool for crop improvement. Plant Biotechnol. J. 14 (2015), 1070–1085.
-
(2015)
Plant Biotechnol. J.
, vol.14
, pp. 1070-1085
-
-
Brozynska, M.1
Furtado, A.2
Henry, R.J.3
-
26
-
-
85042017112
-
rAmpSeq: using repetitive sequences for robust genotyping
-
Buckler, E., Ilut, D.C., Wang, X.Y., Kretzschmar, T., Gore, M.A., Mitchell, S.E., rAmpSeq: using repetitive sequences for robust genotyping. bioRxiv, 2017, 10.1101/096628.
-
(2017)
bioRxiv
-
-
Buckler, E.1
Ilut, D.C.2
Wang, X.Y.3
Kretzschmar, T.4
Gore, M.A.5
Mitchell, S.E.6
-
27
-
-
84877851614
-
Genome-wide comparative diversity uncovers multiple targets of selection for improvement in hexaploid wheat landraces and cultivars
-
Cavanagh, C.R., Chao, S.M., Wang, S.C., Huang, B.E., Stephen, S., Kiani, S., Forrest, K., Saintenac, C., Brown-Guedira, G.L., Akhunova, A., et al. Genome-wide comparative diversity uncovers multiple targets of selection for improvement in hexaploid wheat landraces and cultivars. Proc. Natl. Acad. Sci. USA 110 (2013), 8057–8062.
-
(2013)
Proc. Natl. Acad. Sci. USA
, vol.110
, pp. 8057-8062
-
-
Cavanagh, C.R.1
Chao, S.M.2
Wang, S.C.3
Huang, B.E.4
Stephen, S.5
Kiani, S.6
Forrest, K.7
Saintenac, C.8
Brown-Guedira, G.L.9
Akhunova, A.10
-
28
-
-
84857433347
-
Genome-wide SNP detection, validation, and development of an 8K SNP array for apple
-
Chagné, D., Crowhurst, R.N., Troggio, M., Davey, M.W., Gilmore, B., Lawley, C., Vanderzande, S., Hellens, R.P., Kumar, S., Cestaro, A., et al. Genome-wide SNP detection, validation, and development of an 8K SNP array for apple. PLoS One, 7, 2012, e31745.
-
(2012)
PLoS One
, vol.7
, pp. e31745
-
-
Chagné, D.1
Crowhurst, R.N.2
Troggio, M.3
Davey, M.W.4
Gilmore, B.5
Lawley, C.6
Vanderzande, S.7
Hellens, R.P.8
Kumar, S.9
Cestaro, A.10
-
29
-
-
84903595019
-
Genome-wide association analyses provide genetic and biochemical insights into natural variation in rice metabolism
-
Chen, W., Gao, Y., Xie, W., Gong, L., Lu, K., Wang, W., Li, Y., Liu, X., Zhang, H., Dong, H., et al. Genome-wide association analyses provide genetic and biochemical insights into natural variation in rice metabolism. Nat. Genet. 46 (2014), 714–721.
-
(2014)
Nat. Genet.
, vol.46
, pp. 714-721
-
-
Chen, W.1
Gao, Y.2
Xie, W.3
Gong, L.4
Lu, K.5
Wang, W.6
Li, Y.7
Liu, X.8
Zhang, H.9
Dong, H.10
-
30
-
-
84982129468
-
Subgenome parallel selection is associated with morphotype diversification and convergent crop domestication in Brassica rapa and Brassica oleracea
-
Cheng, F., Sun, R., Hou, X., Zheng, H., Zhang, F., Zhang, Y., Liu, B., Liang, J., Zhuang, M., Liu, Y., et al. Subgenome parallel selection is associated with morphotype diversification and convergent crop domestication in Brassica rapa and Brassica oleracea. Nat. Genet. 48 (2016), 1218–1224.
-
(2016)
Nat. Genet.
, vol.48
, pp. 1218-1224
-
-
Cheng, F.1
Sun, R.2
Hou, X.3
Zheng, H.4
Zhang, F.5
Zhang, Y.6
Liu, B.7
Liang, J.8
Zhuang, M.9
Liu, Y.10
-
31
-
-
84976519522
-
A high-density SNP genotyping array for Brassica napus and its ancestral diploid species based on optimised selection of single-locus markers in the allotetraploid genome
-
Clarke, W.E., Higgins, E.E., Plieske, J., Wieseke, R., Sidebottom, C., Khedikar, Y., Batley, J., Edwards, D., Meng, J., Li, R., et al. A high-density SNP genotyping array for Brassica napus and its ancestral diploid species based on optimised selection of single-locus markers in the allotetraploid genome. Theor. Appl. Genet. 129 (2016), 1887–1899.
-
(2016)
Theor. Appl. Genet.
, vol.129
, pp. 1887-1899
-
-
Clarke, W.E.1
Higgins, E.E.2
Plieske, J.3
Wieseke, R.4
Sidebottom, C.5
Khedikar, Y.6
Batley, J.7
Edwards, D.8
Meng, J.9
Li, R.10
-
32
-
-
85027488244
-
-
A new SNP-genotyping resource for cowpea and its deployment for breeding. In: The Plant and Animal Genome Conference, San Diago, USA. 23:.
-
Close, T.J., Lucas, M.R., Muñoz-Amatriain, M., Mirebrahim, H., Wanamaker, S., Barkley, N.A., Clair, S.S., Guo, Y.N., Lo, S., Huynh, B.L., et al. (2015) A new SNP-genotyping resource for cowpea and its deployment for breeding. In: The Plant and Animal Genome Conference, San Diago, USA. 23: P0784.
-
(2015)
, pp. 0784
-
-
Close, T.J.1
Lucas, M.R.2
Muñoz-Amatriain, M.3
Mirebrahim, H.4
Wanamaker, S.5
Barkley, N.A.6
Clair, S.S.7
Guo, Y.N.8
Lo, S.9
Huynh, B.L.10
-
33
-
-
84870541655
-
Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley
-
Comadran, J., Kilian, B., Russell, J., Ramsay, L., Stein, N., Ganal, M., Shaw, P., Bayer, M., Thomas, W., Marshall, D., et al. Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley. Nat. Genet. 44 (2012), 1388–1392.
-
(2012)
Nat. Genet.
, vol.44
, pp. 1388-1392
-
-
Comadran, J.1
Kilian, B.2
Russell, J.3
Ramsay, L.4
Stein, N.5
Ganal, M.6
Shaw, P.7
Bayer, M.8
Thomas, W.9
Marshall, D.10
-
34
-
-
84878419931
-
Development of DArT marker platforms and genetic diversity assessment of the U.S. collection of the new oilseed crop lesquerella and related species
-
Cruz, V.M., Kilian, A., Dierig, D.A., Development of DArT marker platforms and genetic diversity assessment of the U.S. collection of the new oilseed crop lesquerella and related species. PLoS One, 8, 2013, e64062.
-
(2013)
PLoS One
, vol.8
, pp. e64062
-
-
Cruz, V.M.1
Kilian, A.2
Dierig, D.A.3
-
35
-
-
84878461117
-
Special features of RAD Sequencing data: implications for genotyping
-
Davey, J.W., Cezard, T., Fuentes-Utrilla, P., Eland, C., Gharbi, K., Blaxter, M.L., Special features of RAD Sequencing data: implications for genotyping. Mol. Ecol. 22 (2013), 3151–3164.
-
(2013)
Mol. Ecol.
, vol.22
, pp. 3151-3164
-
-
Davey, J.W.1
Cezard, T.2
Fuentes-Utrilla, P.3
Eland, C.4
Gharbi, K.5
Blaxter, M.L.6
-
36
-
-
79959435199
-
Genome-wide genetic marker discovery and genotyping using next-generation sequencing
-
Davey, J.W., Hohenlohe, P.A., Etter, P.D., Boone, J.Q., Catchen, J.M., Blaxter, M.L., Genome-wide genetic marker discovery and genotyping using next-generation sequencing. Nat. Rev. Genet. 12 (2011), 499–510.
-
(2011)
Nat. Rev. Genet.
, vol.12
, pp. 499-510
-
-
Davey, J.W.1
Hohenlohe, P.A.2
Etter, P.D.3
Boone, J.Q.4
Catchen, J.M.5
Blaxter, M.L.6
-
37
-
-
84858733836
-
Copy number variation affecting the Photoperiod-B1 and Vernalization-A1 genes is associated with altered flowering time in wheat (Triticum aestivum)
-
Diaz, A., Zikhali, M., Turner, A.S., Isaac, P., Laurie, D.A., Copy number variation affecting the Photoperiod-B1 and Vernalization-A1 genes is associated with altered flowering time in wheat (Triticum aestivum). PLoS One, 7, 2012, e33234.
-
(2012)
PLoS One
, vol.7
, pp. e33234
-
-
Diaz, A.1
Zikhali, M.2
Turner, A.S.3
Isaac, P.4
Laurie, D.A.5
-
38
-
-
84895070621
-
Advances in plant chromosome genomics
-
Dolezel, J., Vrana, J., Capal, P., Kubalakova, M., Buresova, V., Simkova, H., Advances in plant chromosome genomics. Biotechnol. Adv. 32 (2014), 122–136.
-
(2014)
Biotechnol. Adv.
, vol.32
, pp. 122-136
-
-
Dolezel, J.1
Vrana, J.2
Capal, P.3
Kubalakova, M.4
Buresova, V.5
Simkova, H.6
-
39
-
-
79955783956
-
A robust, simple genotyping-by-sequencing (GBS) approach for high diversity species
-
Elshire, R.J., Glaubitz, J.C., Poland, J.A., Kawamoto, K., Buckler, E., Mitchell, S.E., A robust, simple genotyping-by-sequencing (GBS) approach for high diversity species. PLoS One, 6, 2011, e19379.
-
(2011)
PLoS One
, vol.6
, pp. e19379
-
-
Elshire, R.J.1
Glaubitz, J.C.2
Poland, J.A.3
Kawamoto, K.4
Buckler, E.5
Mitchell, S.E.6
-
40
-
-
85027957241
-
New resources for genetic studies in Populus nigra: genome-wide SNP discovery and development of a 12k Infinium array
-
Faivre-Rampant, P., Zaina, G., Jorge, V., Giacomello, S., Segura, V., Scalabrin, S., Guérin, V., De Paoli, E., Aluome, C., Viger, M., et al. New resources for genetic studies in Populus nigra: genome-wide SNP discovery and development of a 12k Infinium array. Mol. Ecol. Resour 16 (2016), 1023–1036.
-
(2016)
Mol. Ecol. Resour
, vol.16
, pp. 1023-1036
-
-
Faivre-Rampant, P.1
Zaina, G.2
Jorge, V.3
Giacomello, S.4
Segura, V.5
Scalabrin, S.6
Guérin, V.7
De Paoli, E.8
Aluome, C.9
Viger, M.10
-
41
-
-
77952865614
-
Repeat subtraction-mediated sequence capture from a complex genome
-
Fu, Y., Springer, N.M., Gerhardt, D.J., Ying, K., Yeh, C.T., Wu, W., Swanson-Wagner, R., D'Ascenzo, M., Millard, T., Freeberg, L., et al. Repeat subtraction-mediated sequence capture from a complex genome. Plant J. 62 (2010), 898–909.
-
(2010)
Plant J.
, vol.62
, pp. 898-909
-
-
Fu, Y.1
Springer, N.M.2
Gerhardt, D.J.3
Ying, K.4
Yeh, C.T.5
Wu, W.6
Swanson-Wagner, R.7
D'Ascenzo, M.8
Millard, T.9
Freeberg, L.10
-
42
-
-
83055180602
-
Phenomics–technologies to relieve the phenotyping bottleneck
-
Furbank, R.T., Tester, M., Phenomics–technologies to relieve the phenotyping bottleneck. Trends Plant Sci. 16 (2011), 635–644.
-
(2011)
Trends Plant Sci.
, vol.16
, pp. 635-644
-
-
Furbank, R.T.1
Tester, M.2
-
43
-
-
80053132716
-
Multiple reference genomes and transcriptomes for Arabidopsis thaliana
-
Gan, X., Stegle, O., Behr, J., Steffen, J.G., Drewe, P., Hildebrand, K.L., Lyngsoe, R., Schultheiss, S.J., Osborne, E.J., Sreedharan, V.T., et al. Multiple reference genomes and transcriptomes for Arabidopsis thaliana. Nature 477 (2011), 419–423.
-
(2011)
Nature
, vol.477
, pp. 419-423
-
-
Gan, X.1
Stegle, O.2
Behr, J.3
Steffen, J.G.4
Drewe, P.5
Hildebrand, K.L.6
Lyngsoe, R.7
Schultheiss, S.J.8
Osborne, E.J.9
Sreedharan, V.T.10
-
44
-
-
82955201636
-
A large maize (Zea mays L.) SNP genotyping array: development and germplasm genotyping, and genetic mapping to compare with the B73 reference genome
-
Ganal, M.W., Durstewitz, G., Polley, A., Berard, A., Buckler, E.S., Charcosset, A., Clarke, J.D., Garner, E., Hansen, M., Joets, J., et al. A large maize (Zea mays L.) SNP genotyping array: development and germplasm genotyping, and genetic mapping to compare with the B73 reference genome. PLoS One, 6, 2011, e28334.
-
(2011)
PLoS One
, vol.6
, pp. e28334
-
-
Ganal, M.W.1
Durstewitz, G.2
Polley, A.3
Berard, A.4
Buckler, E.S.5
Charcosset, A.6
Clarke, J.D.7
Garner, E.8
Hansen, M.9
Joets, J.10
-
45
-
-
84949657387
-
A genome-wide survey of DNA methylation in hexaploid wheat
-
Gardiner, L.J., Quinton-Tulloch, M., Olohan, L., Price, J., Hall, N., Hall, A., A genome-wide survey of DNA methylation in hexaploid wheat. Genome Biol., 16, 2015, 273.
-
(2015)
Genome Biol.
, vol.16
, pp. 273
-
-
Gardiner, L.J.1
Quinton-Tulloch, M.2
Olohan, L.3
Price, J.4
Hall, N.5
Hall, A.6
-
46
-
-
73449100520
-
Allele-specific PCR in SNP genotyping
-
A.A. Komar Humana Press Totowa, NJ
-
Gaudet, M., Fara, A.-G., Beritognolo, I., Sabatti, M., Allele-specific PCR in SNP genotyping. Komar, A.A., (eds.) Single Nucleotide Polymorphisms, 2009, Humana Press, Totowa, NJ, 415–424.
-
(2009)
Single Nucleotide Polymorphisms
, pp. 415-424
-
-
Gaudet, M.1
Fara, A.-G.2
Beritognolo, I.3
Sabatti, M.4
-
47
-
-
84958211968
-
Rapid identification of candidate genes for seed weight using the SLAF-seq method in Brassica napus
-
Geng, X., Jiang, C., Yang, J., Wang, L., Wu, X., Wei, W., Rapid identification of candidate genes for seed weight using the SLAF-seq method in Brassica napus. PLoS One, 11, 2016, e0147580.
-
(2016)
PLoS One
, vol.11
, pp. e0147580
-
-
Geng, X.1
Jiang, C.2
Yang, J.3
Wang, L.4
Wu, X.5
Wei, W.6
-
48
-
-
84928015153
-
Genetic diversity and genomic resources available for the small millet crops to accelerate a New Green Revolution
-
Goron, T.L., Raizada, M.N., Genetic diversity and genomic resources available for the small millet crops to accelerate a New Green Revolution. Front. Plant Sci., 6, 2015, 157.
-
(2015)
Front. Plant Sci.
, vol.6
, pp. 157
-
-
Goron, T.L.1
Raizada, M.N.2
-
49
-
-
45549086886
-
Array-based high-throughput DNA markers for crop improvement
-
Gupta, P.K., Rustgi, S., Mir, R.R., Array-based high-throughput DNA markers for crop improvement. Heredity (Edinb) 101 (2008), 5–18.
-
(2008)
Heredity (Edinb)
, vol.101
, pp. 5-18
-
-
Gupta, P.K.1
Rustgi, S.2
Mir, R.R.3
-
50
-
-
43149120377
-
Empirical comparison of simple sequence repeats and single nucleotide polymorphisms in assessment of maize diversity and relatedness
-
Hamblin, M.T., Warburton, M.L., Buckler, E.S., Empirical comparison of simple sequence repeats and single nucleotide polymorphisms in assessment of maize diversity and relatedness. PLoS One, 2, 2007, e1367.
-
(2007)
PLoS One
, vol.2
, pp. e1367
-
-
Hamblin, M.T.1
Warburton, M.L.2
Buckler, E.S.3
-
51
-
-
79958071911
-
Single nucleotide polymorphism discovery in elite North American potato germplasm
-
Hamilton, J.P., Hansey, C.N., Whitty, B.R., Stoffel, K., Massa, A.N., Van Deynze, A., De Jong, W.S., Douches, D.S., Buell, C.R., Single nucleotide polymorphism discovery in elite North American potato germplasm. BMC Genomics, 12, 2011, 302.
-
(2011)
BMC Genomics
, vol.12
, pp. 302
-
-
Hamilton, J.P.1
Hansey, C.N.2
Whitty, B.R.3
Stoffel, K.4
Massa, A.N.5
Van Deynze, A.6
De Jong, W.S.7
Douches, D.S.8
Buell, C.R.9
-
52
-
-
84955185293
-
Domestication footprints anchor genomic regions of agronomic importance in soybeans
-
Han, Y., Zhao, X., Liu, D., Li, Y., Lightfoot, D.A., Yang, Z., Zhao, L., Zhou, G., Wang, Z., Huang, L., et al. Domestication footprints anchor genomic regions of agronomic importance in soybeans. New Phytol. 209 (2015), 871–884.
-
(2015)
New Phytol.
, vol.209
, pp. 871-884
-
-
Han, Y.1
Zhao, X.2
Liu, D.3
Li, Y.4
Lightfoot, D.A.5
Yang, Z.6
Zhao, L.7
Zhou, G.8
Wang, Z.9
Huang, L.10
-
53
-
-
73949123765
-
Energy use efficiency is characterized by an epigenetic component that can be directed through artificial selection to increase yield
-
Hauben, M., Haesendonckx, B., Standaert, E., Van Der Kelen, K., Azmi, A., Akpo, H., Van Breusegem, F., Guisez, Y., Bots, M., Lambert, B., et al. Energy use efficiency is characterized by an epigenetic component that can be directed through artificial selection to increase yield. Proc. Natl. Acad. Sci. USA 106 (2009), 20109–20114.
-
(2009)
Proc. Natl. Acad. Sci. USA
, vol.106
, pp. 20109-20114
-
-
Hauben, M.1
Haesendonckx, B.2
Standaert, E.3
Van Der Kelen, K.4
Azmi, A.5
Akpo, H.6
Van Breusegem, F.7
Guisez, Y.8
Bots, M.9
Lambert, B.10
-
54
-
-
84901455676
-
Efficient genome-wide detection and cataloging of EMS-induced mutations using exome capture and next-generation sequencing
-
Henry, I.M., Nagalakshmi, U., Lieberman, M.C., Ngo, K.J., Krasileva, K.V., Vasquez-Gross, H., Akhunova, A., Akhunov, E., Dubcovsky, J., Tai, T.H., et al. Efficient genome-wide detection and cataloging of EMS-induced mutations using exome capture and next-generation sequencing. Plant Cell 26 (2014), 1382–1397.
-
(2014)
Plant Cell
, vol.26
, pp. 1382-1397
-
-
Henry, I.M.1
Nagalakshmi, U.2
Lieberman, M.C.3
Ngo, K.J.4
Krasileva, K.V.5
Vasquez-Gross, H.6
Akhunova, A.7
Akhunov, E.8
Dubcovsky, J.9
Tai, T.H.10
-
55
-
-
67249117049
-
Potential etiologic and functional implications of genome-wide association loci for human diseases and traits
-
Hindorff, L.A., Sethupathy, P., Junkins, H.A., Ramos, E.M., Mehta, J.P., Collins, F.S., Manolio, T.A., Potential etiologic and functional implications of genome-wide association loci for human diseases and traits. Proc. Natl. Acad. Sci. USA 106 (2009), 9362–9367.
-
(2009)
Proc. Natl. Acad. Sci. USA
, vol.106
, pp. 9362-9367
-
-
Hindorff, L.A.1
Sethupathy, P.2
Junkins, H.A.3
Ramos, E.M.4
Mehta, J.P.5
Collins, F.S.6
Manolio, T.A.7
-
56
-
-
84896808010
-
Insights into the maize pan-genome and pan-transcriptome
-
Hirsch, C.N., Foerster, J.M., Johnson, J.M., Sekhon, R.S., Muttoni, G., Vaillancourt, B., Peñagaricano, F., Lindquist, E., Pedraza, M.A., Barry, K., et al. Insights into the maize pan-genome and pan-transcriptome. Plant Cell 26 (2014), 121–135.
-
(2014)
Plant Cell
, vol.26
, pp. 121-135
-
-
Hirsch, C.N.1
Foerster, J.M.2
Johnson, J.M.3
Sekhon, R.S.4
Muttoni, G.5
Vaillancourt, B.6
Peñagaricano, F.7
Lindquist, E.8
Pedraza, M.A.9
Barry, K.10
-
57
-
-
79960700796
-
Next generation genome-wide association tool: design and coverage of a high-throughput European-optimized SNP array
-
Hoffmann, T.J., Kvale, M.N., Hesselson, S.E., Zhan, Y., Aquino, C., Cao, Y., Cawley, S., Chung, E., Connell, S., Eshragh, J., et al. Next generation genome-wide association tool: design and coverage of a high-throughput European-optimized SNP array. Genomics 98 (2011), 79–89.
-
(2011)
Genomics
, vol.98
, pp. 79-89
-
-
Hoffmann, T.J.1
Kvale, M.N.2
Hesselson, S.E.3
Zhan, Y.4
Aquino, C.5
Cao, Y.6
Cawley, S.7
Chung, E.8
Connell, S.9
Eshragh, J.10
-
58
-
-
84904581077
-
Using genotyping-by-sequencing (GBS) for genomic discovery in cultivated oat
-
Huang, Y.F., Poland, J.A., Wight, C.P., Jackson, E.W., Tinker, N.A., Using genotyping-by-sequencing (GBS) for genomic discovery in cultivated oat. PLoS One, 9, 2014, e102448.
-
(2014)
PLoS One
, vol.9
, pp. e102448
-
-
Huang, Y.F.1
Poland, J.A.2
Wight, C.P.3
Jackson, E.W.4
Tinker, N.A.5
-
59
-
-
84930847935
-
Development of a 63K SNP Array for Cotton and High-Density Mapping of Intra-and Inter-Specific Populations of Gossypium spp
-
Hulse-Kemp, A.M., Lemm, J., Plieske, J., Ashrafi, H., Buyyarapu, R., Fang, D.D., Frelichowski, J., Giband, M., Hague, S., Hinze, L.L., et al. Development of a 63K SNP Array for Cotton and High-Density Mapping of Intra-and Inter-Specific Populations of Gossypium spp. G3 (Bethesda) 5 (2015), 1187–1209.
-
(2015)
G3 (Bethesda)
, vol.5
, pp. 1187-1209
-
-
Hulse-Kemp, A.M.1
Lemm, J.2
Plieske, J.3
Ashrafi, H.4
Buyyarapu, R.5
Fang, D.D.6
Frelichowski, J.7
Giband, M.8
Hague, S.9
Hinze, L.L.10
-
60
-
-
84962308682
-
Genomics-assisted breeding in fruit trees
-
Iwata, H., Minamikawa, M.F., Kajiya-Kanegae, H., Ishimori, M., Hayashi, T., Genomics-assisted breeding in fruit trees. Breed. Sci. 66 (2016), 100–115.
-
(2016)
Breed. Sci.
, vol.66
, pp. 100-115
-
-
Iwata, H.1
Minamikawa, M.F.2
Kajiya-Kanegae, H.3
Ishimori, M.4
Hayashi, T.5
-
61
-
-
84925483131
-
Genotyping-by-sequencing based intra-specific genetic map refines a “QTL-hotspot” region for drought tolerance in chickpea
-
Jaganathan, D., Thudi, M., Kale, S., Azam, S., Roorkiwal, M., Gaur, P.M., Kishor, P.B.K., Nguyen, H., Sutton, T., Varshney, R.K., Genotyping-by-sequencing based intra-specific genetic map refines a “QTL-hotspot” region for drought tolerance in chickpea. Mol. Genet. Genomics 290 (2015), 559–571.
-
(2015)
Mol. Genet. Genomics
, vol.290
, pp. 559-571
-
-
Jaganathan, D.1
Thudi, M.2
Kale, S.3
Azam, S.4
Roorkiwal, M.5
Gaur, P.M.6
Kishor, P.B.K.7
Nguyen, H.8
Sutton, T.9
Varshney, R.K.10
-
62
-
-
84939199382
-
A haplotype map of allohexaploid wheat reveals distinct patterns of selection on homoeologous genomes
-
Jordan, K.W., Wang, S., Lun, Y., Gardiner, L.J., MacLachlan, R., Hucl, P., Wiebe, K., Wong, D., Forrest, K.L., et al., IWGS Consortium. A haplotype map of allohexaploid wheat reveals distinct patterns of selection on homoeologous genomes. Genome Biol., 16, 2015, 48.
-
(2015)
Genome Biol.
, vol.16
, pp. 48
-
-
Jordan, K.W.1
Wang, S.2
Lun, Y.3
Gardiner, L.J.4
MacLachlan, R.5
Hucl, P.6
Wiebe, K.7
Wong, D.8
Forrest, K.L.9
-
63
-
-
84961210580
-
Translational genomics for plant breeding with the genome sequence explosion
-
Kang, Y.J., Lee, T., Lee, J., Shim, S., Jeong, H., Satyawan, D., Kim, M.Y., Lee, S.H., Translational genomics for plant breeding with the genome sequence explosion. Plant Biotechnol. J. 14 (2016), 1057–1069.
-
(2016)
Plant Biotechnol. J.
, vol.14
, pp. 1057-1069
-
-
Kang, Y.J.1
Lee, T.2
Lee, J.3
Shim, S.4
Jeong, H.5
Satyawan, D.6
Kim, M.Y.7
Lee, S.H.8
-
64
-
-
84855261534
-
Identification, characterization and interpretation of single nucleotide sequence variation in allopolyploid crop species
-
Kaur, S., Francki, M., Forster, J., Identification, characterization and interpretation of single nucleotide sequence variation in allopolyploid crop species. Plant Biotechnol. J. 10 (2012), 125–138.
-
(2012)
Plant Biotechnol. J.
, vol.10
, pp. 125-138
-
-
Kaur, S.1
Francki, M.2
Forster, J.3
-
65
-
-
84868353666
-
A multi-population consensus genetic map reveals inconsistent marker order among maps likely attributed to structural variations in the apple genome
-
Khan, M.A., Han, Y., Zhao, Y.F., Troggio, M., Korban, S.S., A multi-population consensus genetic map reveals inconsistent marker order among maps likely attributed to structural variations in the apple genome. PLoS One, 7, 2012, e47864.
-
(2012)
PLoS One
, vol.7
, pp. e47864
-
-
Khan, M.A.1
Han, Y.2
Zhao, Y.F.3
Troggio, M.4
Korban, S.S.5
-
66
-
-
84947031109
-
Application of genotyping by sequencing technology to a variety of crop breeding programs
-
Kim, C., Guo, H., Kong, W., Chandnani, R., Shuang, L.S., Paterson, A.H., Application of genotyping by sequencing technology to a variety of crop breeding programs. Plant Sci. 242 (2016), 14–22.
-
(2016)
Plant Sci.
, vol.242
, pp. 14-22
-
-
Kim, C.1
Guo, H.2
Kong, W.3
Chandnani, R.4
Shuang, L.S.5
Paterson, A.H.6
-
67
-
-
84875459807
-
Identification of SNPs in closely related Temperate Japonica rice cultivars using restriction enzyme-phased sequencing
-
Kim, S.I., Tai, T.H., Identification of SNPs in closely related Temperate Japonica rice cultivars using restriction enzyme-phased sequencing. PLoS One, 8, 2013, e60176.
-
(2013)
PLoS One
, vol.8
, pp. e60176
-
-
Kim, S.I.1
Tai, T.H.2
-
68
-
-
0037364777
-
Physicochemical properties and end-use quality of wheat starch as a function of waxy protein alleles
-
Kim, W., Johnson, J.W., Graybosch, R.A., Gaines, C.S., Physicochemical properties and end-use quality of wheat starch as a function of waxy protein alleles. J. Cereal Sci. 37 (2003), 195–204.
-
(2003)
J. Cereal Sci.
, vol.37
, pp. 195-204
-
-
Kim, W.1
Johnson, J.W.2
Graybosch, R.A.3
Gaines, C.S.4
-
69
-
-
84983375317
-
A step change in the transfer of interspecific variation into wheat from Amblyopyrum muticum
-
King, J., Grewal, S., Yang, C.Y., Hubbart, S., Scholefield, D., Ashling, S., Edwards, K.J., Allen, A.M., Burridge, A.J., Bloor, C., et al. A step change in the transfer of interspecific variation into wheat from Amblyopyrum muticum. Plant Biotechnol. J. 15 (2016), 217–226.
-
(2016)
Plant Biotechnol. J.
, vol.15
, pp. 217-226
-
-
King, J.1
Grewal, S.2
Yang, C.Y.3
Hubbart, S.4
Scholefield, D.5
Ashling, S.6
Edwards, K.J.7
Allen, A.M.8
Burridge, A.J.9
Bloor, C.10
-
70
-
-
77955502865
-
CBF gene copy number variation at Frost Resistance-2 is associated with levels of freezing tolerance in temperate-climate cereals
-
Knox, A.K., Dhillon, T., Cheng, H., Tondelli, A., Pecchioni, N., Stockinger, E.J., CBF gene copy number variation at Frost Resistance-2 is associated with levels of freezing tolerance in temperate-climate cereals. Theor. Appl. Genet. 121 (2010), 21–35.
-
(2010)
Theor. Appl. Genet.
, vol.121
, pp. 21-35
-
-
Knox, A.K.1
Dhillon, T.2
Cheng, H.3
Tondelli, A.4
Pecchioni, N.5
Stockinger, E.J.6
-
71
-
-
84940185077
-
Application of genomics-assisted breeding for generation of climate resilient crops: progress and prospects
-
Kole, C., Muthamilarasan, M., Henry, R., Edwards, D., Sharma, R., Abberton, M., Batley, J., Bentley, A., Blakeney, M., Bryant, J., et al. Application of genomics-assisted breeding for generation of climate resilient crops: progress and prospects. Front. Plant Sci., 6, 2015, 563.
-
(2015)
Front. Plant Sci.
, vol.6
, pp. 563
-
-
Kole, C.1
Muthamilarasan, M.2
Henry, R.3
Edwards, D.4
Sharma, R.5
Abberton, M.6
Batley, J.7
Bentley, A.8
Blakeney, M.9
Bryant, J.10
-
72
-
-
84928123257
-
Using RNA-Seq to assemble a rose transcriptome with more than 13,000 full-length expressed genes and to develop the WagRhSNP 68k Axiom SNP array for rose (Rosa L.)
-
Koning-Boucoiran, C.F., Esselink, G.D., Vukosavljev, M., van't Westende, W.P., Gitonga, V.W., Krens, F.A., Voorrips, R.E., van de Weg, W.E., Schulz, D., Debener, T., et al. Using RNA-Seq to assemble a rose transcriptome with more than 13,000 full-length expressed genes and to develop the WagRhSNP 68k Axiom SNP array for rose (Rosa L.). Front. Plant Sci., 6, 2015, 249.
-
(2015)
Front. Plant Sci.
, vol.6
, pp. 249
-
-
Koning-Boucoiran, C.F.1
Esselink, G.D.2
Vukosavljev, M.3
van't Westende, W.P.4
Gitonga, V.W.5
Krens, F.A.6
Voorrips, R.E.7
van de Weg, W.E.8
Schulz, D.9
Debener, T.10
-
73
-
-
84860503096
-
Genomic selection for fruit quality traits in apple (Malus × domestica Borkh.)
-
Kumar, S., Chagné, D., Bink, M.C.A.M., Volz, R.K., Whitworth, C., Carlisle, C., Genomic selection for fruit quality traits in apple (Malus × domestica Borkh.). PLoS One, 7, 2012, e36674.
-
(2012)
PLoS One
, vol.7
, pp. e36674
-
-
Kumar, S.1
Chagné, D.2
Bink, M.C.A.M.3
Volz, R.K.4
Whitworth, C.5
Carlisle, C.6
-
74
-
-
84878814495
-
Novel genomic approaches unravel genetic architecture of complex traits in apple
-
Kumar, S., Garrick, D., Bink, M., Whitworth, C., Chagne, D., Volz, R., Novel genomic approaches unravel genetic architecture of complex traits in apple. BMC Genomics, 14, 2013, 393.
-
(2013)
BMC Genomics
, vol.14
, pp. 393
-
-
Kumar, S.1
Garrick, D.2
Bink, M.3
Whitworth, C.4
Chagne, D.5
Volz, R.6
-
75
-
-
85027499075
-
-
Di Gaspero, G., Hausmann, L., Lacombe, T., et al., (2013) The GrapeReSeq 18 k Vitis genotyping chip. In 9th International symposium grapevine physiology and biotechnology: International Society for Horticultural Science; 21–26 April 2013; La Serena
-
Le Paslier M-C., Choisne, N., Bacilieri, R., Bounon, R., Boursiquot, J.-M., Bras, M., Brunel, D., Di Gaspero, G., Hausmann, L., Lacombe, T., et al. (2013) The GrapeReSeq 18 k Vitis genotyping chip. In 9th International symposium grapevine physiology and biotechnology: International Society for Horticultural Science; 21–26 April 2013; La Serena, p. 123.
-
-
-
Le Paslier, M.-C.1
Choisne, N.2
Bacilieri, R.3
Bounon, R.4
Boursiquot, J.-M.5
Bras, M.6
Brunel, D.7
-
76
-
-
84937598576
-
Identification of QTLs for rust resistance in the peanut wild species Arachis magna and the development of KASP markers for marker-assisted selection
-
Leal-Bertioli, S.C.M., Cavalcante, U., Gouvea, E.G., Ballén-Taborda, C., Shirasawa, K., Guimarães, P.M., Jackson, S.A., Bertioli, D.J., Moretzsohn, M.C., Identification of QTLs for rust resistance in the peanut wild species Arachis magna and the development of KASP markers for marker-assisted selection. G3 (Bethesda) 5 (2015), 1403–1413.
-
(2015)
G3 (Bethesda)
, vol.5
, pp. 1403-1413
-
-
Leal-Bertioli, S.C.M.1
Cavalcante, U.2
Gouvea, E.G.3
Ballén-Taborda, C.4
Shirasawa, K.5
Guimarães, P.M.6
Jackson, S.A.7
Bertioli, D.J.8
Moretzsohn, M.C.9
-
77
-
-
84922624423
-
Development, validation and genetic analysis of a large soybean SNP genotyping array
-
Lee, Y.G., Jeong, N., Kim, J.H., Lee, K., Kim, K.H., Pirani, A., Ha, B.K., Kang, S.T., Park, B.S., Moon, J.K., et al. Development, validation and genetic analysis of a large soybean SNP genotyping array. Plant J. 81 (2015), 625–636.
-
(2015)
Plant J.
, vol.81
, pp. 625-636
-
-
Lee, Y.G.1
Jeong, N.2
Kim, J.H.3
Lee, K.4
Kim, K.H.5
Pirani, A.6
Ha, B.K.7
Kang, S.T.8
Park, B.S.9
Moon, J.K.10
-
78
-
-
84925844258
-
A high density GBS map of bread wheat and its application for dissecting complex disease resistance traits
-
Li, H., Vikram, P., Singh, R.P., Kilian, A., Carling, J., Song, J., Burgueno-Ferreira, J.A., Bhavani, S., Huerta-Espino, J., Payne, T., et al. A high density GBS map of bread wheat and its application for dissecting complex disease resistance traits. BMC Genomics, 16, 2015, 216.
-
(2015)
BMC Genomics
, vol.16
, pp. 216
-
-
Li, H.1
Vikram, P.2
Singh, R.P.3
Kilian, A.4
Carling, J.5
Song, J.6
Burgueno-Ferreira, J.A.7
Bhavani, S.8
Huerta-Espino, J.9
Payne, T.10
-
79
-
-
84923019049
-
De novo assembly of soybean wild relatives for pan-genome analysis of diversity and agronomic traits
-
Li, Y.H., Zhou, G., Ma, J., Jiang, W., Jin, L.G., Zhang, Z., Guo, Y., Zhang, J., Sui, Y., Zheng, L., et al. De novo assembly of soybean wild relatives for pan-genome analysis of diversity and agronomic traits. Nat. Biotechnol. 32 (2014), 1045–1052.
-
(2014)
Nat. Biotechnol.
, vol.32
, pp. 1045-1052
-
-
Li, Y.H.1
Zhou, G.2
Ma, J.3
Jiang, W.4
Jin, L.G.5
Zhang, Z.6
Guo, Y.7
Zhang, J.8
Sui, Y.9
Zheng, L.10
-
80
-
-
84956695166
-
Diversity analysis and genomic prediction of Sclerotinia resistance in sunflower using a new 25 K SNP genotyping array
-
Livaja, M., Unterseer, S., Erath, W., Lehermeier, C., Wieseke, R., Plieske, J., Polley, A., Luerßen, H., Wieckhorst, S., Mascher, M., et al. Diversity analysis and genomic prediction of Sclerotinia resistance in sunflower using a new 25 K SNP genotyping array. Theor. Appl. Genet. 129 (2016), 317–329.
-
(2016)
Theor. Appl. Genet.
, vol.129
, pp. 317-329
-
-
Livaja, M.1
Unterseer, S.2
Erath, W.3
Lehermeier, C.4
Wieseke, R.5
Plieske, J.6
Polley, A.7
Luerßen, H.8
Wieckhorst, S.9
Mascher, M.10
-
81
-
-
85004190330
-
An innovative SNP genotyping method adapting to multiple platforms and throughputs
-
Long, Y.M., Chao, W.S., Ma, G.J., Xu, S.S., Qi, L.L., An innovative SNP genotyping method adapting to multiple platforms and throughputs. Theor. Appl. Genet. 130 (2016), 597–607.
-
(2016)
Theor. Appl. Genet.
, vol.130
, pp. 597-607
-
-
Long, Y.M.1
Chao, W.S.2
Ma, G.J.3
Xu, S.S.4
Qi, L.L.5
-
82
-
-
4344616881
-
Rapid recent growth and divergence of rice nuclear genomes
-
Ma, J., Bennetzen, J.L., Rapid recent growth and divergence of rice nuclear genomes. Proc. Natl. Acad. Sci. USA 101 (2004), 12404–12410.
-
(2004)
Proc. Natl. Acad. Sci. USA
, vol.101
, pp. 12404-12410
-
-
Ma, J.1
Bennetzen, J.L.2
-
83
-
-
84932621776
-
Large-scale SNP discovery and genotyping for constructing a high-density genetic map of tea plant using specific-locus amplified fragment sequencing (SLAF-seq)
-
Ma, J.Q., Huang, L., Ma, C.L., Jin, J.Q., Li, C.F., Wang, R.K., Zheng, H.K., Yao, M.Z., Chen, L., Large-scale SNP discovery and genotyping for constructing a high-density genetic map of tea plant using specific-locus amplified fragment sequencing (SLAF-seq). PLoS One, 10, 2015, e0128798.
-
(2015)
PLoS One
, vol.10
, pp. e0128798
-
-
Ma, J.Q.1
Huang, L.2
Ma, C.L.3
Jin, J.Q.4
Li, C.F.5
Wang, R.K.6
Zheng, H.K.7
Yao, M.Z.8
Chen, L.9
-
84
-
-
84875508685
-
Aluminum tolerance in maize is associated with higher MATE1 gene copy number
-
Maron, L.G., Guimarães, C.T., Kirst, M., Albert, P.S., Birchler, J.A., Bradbury, P.J., Buckler, E.S., Coluccio, A.E., Danilova, T.V., Kudrna, D., et al. Aluminum tolerance in maize is associated with higher MATE1 gene copy number. Proc. Natl. Acad. Sci. USA 110 (2013), 5241–5246.
-
(2013)
Proc. Natl. Acad. Sci. USA
, vol.110
, pp. 5241-5246
-
-
Maron, L.G.1
Guimarães, C.T.2
Kirst, M.3
Albert, P.S.4
Birchler, J.A.5
Bradbury, P.J.6
Buckler, E.S.7
Coluccio, A.E.8
Danilova, T.V.9
Kudrna, D.10
-
85
-
-
84885672827
-
Barley whole exome capture: a tool for genomic research in the genus Hordeum and beyond
-
Mascher, M., Richmond, T.A., Gerhardt, D.J., Himmelbach, A., Clissold, L., Sampath, D., Ayling, S., Steuernagel, B., Pfeifer, M., D'Ascenzo, M., et al. Barley whole exome capture: a tool for genomic research in the genus Hordeum and beyond. Plant J. 76 (2013), 494–505.
-
(2013)
Plant J.
, vol.76
, pp. 494-505
-
-
Mascher, M.1
Richmond, T.A.2
Gerhardt, D.J.3
Himmelbach, A.4
Clissold, L.5
Sampath, D.6
Ayling, S.7
Steuernagel, B.8
Pfeifer, M.9
D'Ascenzo, M.10
-
86
-
-
64749106923
-
A high-throughput assay for rapid and simultaneous analysis of perfect markers for important quality and agronomic traits in rice using multiplexed MALDI-TOF mass spectrometry
-
Masouleh, A.K., Waters, D.L., Reinke, R.F., Henry, R.J., A high-throughput assay for rapid and simultaneous analysis of perfect markers for important quality and agronomic traits in rice using multiplexed MALDI-TOF mass spectrometry. Plant Biotechnol. J. 7 (2009), 355–363.
-
(2009)
Plant Biotechnol. J.
, vol.7
, pp. 355-363
-
-
Masouleh, A.K.1
Waters, D.L.2
Reinke, R.F.3
Henry, R.J.4
-
87
-
-
20844455582
-
Genotyping over 100,000 SNPs on a pair of oligonucleotide arrays
-
Matsuzaki, H., Dong, S., Loi, H., Di, X., Liu, G., Hubbell, E., Law, J., Berntsen, T., Chadha, M., Hui, H., et al. Genotyping over 100,000 SNPs on a pair of oligonucleotide arrays. Nat. Methods 1 (2004), 109–111.
-
(2004)
Nat. Methods
, vol.1
, pp. 109-111
-
-
Matsuzaki, H.1
Dong, S.2
Loi, H.3
Di, X.4
Liu, G.5
Hubbell, E.6
Law, J.7
Berntsen, T.8
Chadha, M.9
Hui, H.10
-
88
-
-
0036928793
-
Development and mapping of 2240 new SSR markers for rice (Oryza sativa L.)
-
McCouch, S.R., Teytelman, L., Xu, Y., Lobos, K.B., Clare, K., Walton, M., Fu, B., Maghirang, R., Li, Z., Xing, Y., et al. Development and mapping of 2240 new SSR markers for rice (Oryza sativa L.). DNA Res. 9 (2002), 199–207.
-
(2002)
DNA Res.
, vol.9
, pp. 199-207
-
-
McCouch, S.R.1
Teytelman, L.2
Xu, Y.3
Lobos, K.B.4
Clare, K.5
Walton, M.6
Fu, B.7
Maghirang, R.8
Li, Z.9
Xing, Y.10
-
89
-
-
78751512972
-
Development of genome-wide SNP assays for rice
-
McCouch, S.R., Zhao, K., Wright, M., Tung, C.W., Ebana, K., Thomson, M., Reynolds, A., Wang, D., DeClerck, G., Ali, M.L., et al. Development of genome-wide SNP assays for rice. Breed. Sci. 60 (2010), 524–535.
-
(2010)
Breed. Sci.
, vol.60
, pp. 524-535
-
-
McCouch, S.R.1
Zhao, K.2
Wright, M.3
Tung, C.W.4
Ebana, K.5
Thomson, M.6
Reynolds, A.7
Wang, D.8
DeClerck, G.9
Ali, M.L.10
-
90
-
-
84864692624
-
Structural variants in the soybean genome localize to clusters of biotic stress-response genes
-
McHale, L.K., Haun, W.J., Xu, W.W., Bhaskar, P.B., Anderson, J.E., Hyten, D.L., Gerhardt, D.J., Jeddeloh, J.A., Stupar, R.M., Structural variants in the soybean genome localize to clusters of biotic stress-response genes. Plant Physiol. 159 (2012), 1295–1308.
-
(2012)
Plant Physiol.
, vol.159
, pp. 1295-1308
-
-
McHale, L.K.1
Haun, W.J.2
Xu, W.W.3
Bhaskar, P.B.4
Anderson, J.E.5
Hyten, D.L.6
Gerhardt, D.J.7
Jeddeloh, J.A.8
Stupar, R.M.9
-
91
-
-
84878408795
-
Blast resistance in rice: a review of conventional breeding to molecular approaches
-
Miah, G., Rafii, M.Y., Ismail, M.R., Puteh, A.B., Rahim, H.A., Asfaliza, R., Latif, M.A., Blast resistance in rice: a review of conventional breeding to molecular approaches. Mol. Biol. Rep. 40 (2013), 2369–2388.
-
(2013)
Mol. Biol. Rep.
, vol.40
, pp. 2369-2388
-
-
Miah, G.1
Rafii, M.Y.2
Ismail, M.R.3
Puteh, A.B.4
Rahim, H.A.5
Asfaliza, R.6
Latif, M.A.7
-
92
-
-
84885405628
-
Identification of Pyrus single nucleotide polymorphisms (SNPs) and evaluation for genetic mapping in European pear and interspecific Pyrus hybrids
-
Montanari, S., Saeed, M., Knäbel, M., Kim, Y., Troggio, M., Malnoy, M., Velasco, R., Fontana, P., Won, K., Durel, C.E., et al. Identification of Pyrus single nucleotide polymorphisms (SNPs) and evaluation for genetic mapping in European pear and interspecific Pyrus hybrids. PLoS One, 8, 2013, e77022.
-
(2013)
PLoS One
, vol.8
, pp. e77022
-
-
Montanari, S.1
Saeed, M.2
Knäbel, M.3
Kim, Y.4
Troggio, M.5
Malnoy, M.6
Velasco, R.7
Fontana, P.8
Won, K.9
Durel, C.E.10
-
93
-
-
77952534535
-
Rapid genomic characterization of the genus vitis
-
Myles, S., Chia, J.M., Hurwitz, B., Simon, C., Zhong, G.Y., Buckler, E., Ware, D., Rapid genomic characterization of the genus vitis. PLoS One, 5, 2010, e8219.
-
(2010)
PLoS One
, vol.5
, pp. e8219
-
-
Myles, S.1
Chia, J.M.2
Hurwitz, B.3
Simon, C.4
Zhong, G.Y.5
Buckler, E.6
Ware, D.7
-
94
-
-
53749101271
-
Evaluating the performance of Affymetrix SNP Array 6.0 platform with 400 Japanese individuals
-
Nishida, N., Koike, A., Tajima, A., Ogasawara, Y., Ishibashi, Y., Uehara, Y., Inoue, I., Tokunaga, K., Evaluating the performance of Affymetrix SNP Array 6.0 platform with 400 Japanese individuals. BMC Genomics, 9, 2008, 431.
-
(2008)
BMC Genomics
, vol.9
, pp. 431
-
-
Nishida, N.1
Koike, A.2
Tajima, A.3
Ogasawara, Y.4
Ishibashi, Y.5
Uehara, Y.6
Inoue, I.7
Tokunaga, K.8
-
95
-
-
85009452486
-
Development and evaluation of a high density genotyping 'Axiom_Arachis' array with 58 K SNPs for accelerating genetics and breeding in groundnut
-
Pandey, M.K., Agarwal, G., Kale, S.M., Clevenger, J., Nayak, S.N., Sriswathi, M., Chitikineni, A., Chavarro, C., Chen, X., Upadhyaya, H.D., et al. Development and evaluation of a high density genotyping 'Axiom_Arachis' array with 58 K SNPs for accelerating genetics and breeding in groundnut. Sci. Rep., 7, 2017, 40577.
-
(2017)
Sci. Rep.
, vol.7
, pp. 40577
-
-
Pandey, M.K.1
Agarwal, G.2
Kale, S.M.3
Clevenger, J.4
Nayak, S.N.5
Sriswathi, M.6
Chitikineni, A.7
Chavarro, C.8
Chen, X.9
Upadhyaya, H.D.10
-
96
-
-
84966349181
-
Emerging genomic tools for legume breeding: current status and future prospects
-
Pandey, M.K., Roorkiwal, M., Singh, V.K., Ramalingam, A., Kudapa, H., Thudi, M., Chitikineni, A., Rathore, A., Varshney, R.K., Emerging genomic tools for legume breeding: current status and future prospects. Front. Plant Sci., 7, 2016, 455.
-
(2016)
Front. Plant Sci.
, vol.7
, pp. 455
-
-
Pandey, M.K.1
Roorkiwal, M.2
Singh, V.K.3
Ramalingam, A.4
Kudapa, H.5
Thudi, M.6
Chitikineni, A.7
Rathore, A.8
Varshney, R.K.9
-
97
-
-
84955438479
-
Genomic-assisted haplotype analysis and the development of high-throughput SNP markers for salinity tolerance in soybean
-
Patil, G., Do, T., Vuong, T.D., Valliyodan, B., Lee, J.D., Chaudhary, J., Shannon, J.G., Nguyen, H.T., Genomic-assisted haplotype analysis and the development of high-throughput SNP markers for salinity tolerance in soybean. Sci. Rep., 6, 2016, 19199.
-
(2016)
Sci. Rep.
, vol.6
, pp. 19199
-
-
Patil, G.1
Do, T.2
Vuong, T.D.3
Valliyodan, B.4
Lee, J.D.5
Chaudhary, J.6
Shannon, J.G.7
Nguyen, H.T.8
-
98
-
-
84871449264
-
Genome-wide SNP detection, validation and development of a 6K SNP assay for sweet and sour cherry
-
Peace, C., Bassil, N., Main, D.F.S., Rosyara, U.R., Stegmeir, T., Sebolt, A., Gilmore, B., Lawley, C., Mockler, T.C., Bryant, D.W., et al. Genome-wide SNP detection, validation and development of a 6K SNP assay for sweet and sour cherry. PLoS One, 7, 2012, e48305.
-
(2012)
PLoS One
, vol.7
, pp. e48305
-
-
Peace, C.1
Bassil, N.2
Main, D.F.S.3
Rosyara, U.R.4
Stegmeir, T.5
Sebolt, A.6
Gilmore, B.7
Lawley, C.8
Mockler, T.C.9
Bryant, D.W.10
-
99
-
-
42949089797
-
SNP genotyping: six technologies that keyed a revolution
-
Perkel, J., SNP genotyping: six technologies that keyed a revolution. Nat. Methods 5 (2008), 447–453.
-
(2008)
Nat. Methods
, vol.5
, pp. 447-453
-
-
Perkel, J.1
-
100
-
-
84861691274
-
Double digest RADseq: an inexpensive method for de novo SNP discovery and genotyping in model and non-model species
-
Peterson, B.K., Weber, J.N., Kay, E.H., Fisher, H.S., Hoekstra, H.E., Double digest RADseq: an inexpensive method for de novo SNP discovery and genotyping in model and non-model species. PLoS One, 7, 2012, e37135.
-
(2012)
PLoS One
, vol.7
, pp. e37135
-
-
Peterson, B.K.1
Weber, J.N.2
Kay, E.H.3
Fisher, H.S.4
Hoekstra, H.E.5
-
101
-
-
84857520461
-
Development of high-density genetic maps for barley and wheat using a novel two-enzyme genotyping-by-sequencing approach
-
Poland, J.A., Brown, P.J., Sorrells, M.E., Jannink, J.L., Development of high-density genetic maps for barley and wheat using a novel two-enzyme genotyping-by-sequencing approach. PLoS One, 7, 2012, e32253.
-
(2012)
PLoS One
, vol.7
, pp. e32253
-
-
Poland, J.A.1
Brown, P.J.2
Sorrells, M.E.3
Jannink, J.L.4
-
102
-
-
84930891110
-
Molecular marker-assisted breeding for tropical maize improvement
-
R. Wusurika M. Bohn J. Lai C. Kole CRC Press London
-
Prasanna, B.M., Babu, R., Nair, S., Semagn, K., Chaikam, V., Cairns, J., Zhang, X., Xu, Y., Olsen, M., Molecular marker-assisted breeding for tropical maize improvement. Wusurika, R., Bohn, M., Lai, J., Kole, C., (eds.) Genetics, Genomics and Breeding of Maize, 2014, CRC Press, London, 89–119.
-
(2014)
Genetics, Genomics and Breeding of Maize
, pp. 89-119
-
-
Prasanna, B.M.1
Babu, R.2
Nair, S.3
Semagn, K.4
Chaikam, V.5
Cairns, J.6
Zhang, X.7
Xu, Y.8
Olsen, M.9
-
103
-
-
77955053800
-
Molecular marker-assisted breeding options for maize improvement in Asia
-
Prasanna, B.M., Pixley, K., Warburton, M.L., Xie, C.-X., Molecular marker-assisted breeding options for maize improvement in Asia. Mol. Breed. 26 (2010), 339–356.
-
(2010)
Mol. Breed.
, vol.26
, pp. 339-356
-
-
Prasanna, B.M.1
Pixley, K.2
Warburton, M.L.3
Xie, C.-X.4
-
104
-
-
84897959662
-
Recent progress on molecular breeding of rice in China
-
Rao, Y., Li, Y., Qian, Q., Recent progress on molecular breeding of rice in China. Plant Cell Rep. 33 (2014), 551–564.
-
(2014)
Plant Cell Rep.
, vol.33
, pp. 551-564
-
-
Rao, Y.1
Li, Y.2
Qian, Q.3
-
105
-
-
84974823983
-
Development and validation of KASP assays for functional genes underpinning key economic traits in wheat
-
Rasheed, A., Wen, W., Gao, F.M., Zhai, S., Jin, H., Liu, J.D., Guo, Q., Zhang, Y.J., Dreisigacker, S., Xia, X.C., et al. Development and validation of KASP assays for functional genes underpinning key economic traits in wheat. Theor. Appl. Genet. 129 (2016), 1843–1860.
-
(2016)
Theor. Appl. Genet.
, vol.129
, pp. 1843-1860
-
-
Rasheed, A.1
Wen, W.2
Gao, F.M.3
Zhai, S.4
Jin, H.5
Liu, J.D.6
Guo, Q.7
Zhang, Y.J.8
Dreisigacker, S.9
Xia, X.C.10
-
106
-
-
84901915081
-
Wheat seed storage proteins: advances in molecular genetics, diversity and breeding applications
-
Rasheed, A., Xia, X.C., Yan, Y.M., Appels, R., Mahmood, T., He, Z.H., Wheat seed storage proteins: advances in molecular genetics, diversity and breeding applications. J. Cereal Sci. 60 (2014), 11–24.
-
(2014)
J. Cereal Sci.
, vol.60
, pp. 11-24
-
-
Rasheed, A.1
Xia, X.C.2
Yan, Y.M.3
Appels, R.4
Mahmood, T.5
He, Z.H.6
-
107
-
-
84871773498
-
Recent patterns of crop yield growth and stagnation
-
Ray, D.K., Ramankutty, N., Mueller, N.D., West, P.C., Foley, J.A., Recent patterns of crop yield growth and stagnation. Nat. Commun., 3, 2012, 1293.
-
(2012)
Nat. Commun.
, vol.3
, pp. 1293
-
-
Ray, D.K.1
Ramankutty, N.2
Mueller, N.D.3
West, P.C.4
Foley, J.A.5
-
108
-
-
84856283792
-
Genomic and metabolic prediction of complex heterotic traits in hybrid maize
-
Riedelsheimer, C., Czedik-Eysenberg, A., Grieder, C., Lisec, J., Technow, F., Sulpice, R., Altmann, T., Stitt, M., Willmitzer, L., Melchinger, A.E., Genomic and metabolic prediction of complex heterotic traits in hybrid maize. Nat. Genet. 44 (2012), 217–220.
-
(2012)
Nat. Genet.
, vol.44
, pp. 217-220
-
-
Riedelsheimer, C.1
Czedik-Eysenberg, A.2
Grieder, C.3
Lisec, J.4
Technow, F.5
Sulpice, R.6
Altmann, T.7
Stitt, M.8
Willmitzer, L.9
Melchinger, A.E.10
-
109
-
-
84929132094
-
Escape from the laboratory: new horizons for plant genetics
-
Rossetto, M., Henry, R.J., Escape from the laboratory: new horizons for plant genetics. Trends Plant Sci. 19 (2014), 554–555.
-
(2014)
Trends Plant Sci.
, vol.19
, pp. 554-555
-
-
Rossetto, M.1
Henry, R.J.2
-
110
-
-
84928668294
-
Study on essential derivation in maize: III. Selection and evaluation of a panel of single nucleotide polymorphism loci for use in European and North American germplasm
-
Rousselle, Y., Jones, E., Charcosset, A., Moreau, P., Robbins, K., Stich, B., Knaak, C., Flament, P., Karaman, Z., Martinant, J.P., et al. Study on essential derivation in maize: III. Selection and evaluation of a panel of single nucleotide polymorphism loci for use in European and North American germplasm. Crop Sci. 55 (2015), 1170–1180.
-
(2015)
Crop Sci.
, vol.55
, pp. 1170-1180
-
-
Rousselle, Y.1
Jones, E.2
Charcosset, A.3
Moreau, P.4
Robbins, K.5
Stich, B.6
Knaak, C.7
Flament, P.8
Karaman, Z.9
Martinant, J.P.10
-
111
-
-
80052831072
-
Targeted analysis of nucleotide and copy number variation by exon capture in allotetraploid wheat genome
-
Saintenac, C., Jiang, D., Akhunov, E.D., Targeted analysis of nucleotide and copy number variation by exon capture in allotetraploid wheat genome. Genome Biol., 12, 2011, R88.
-
(2011)
Genome Biol.
, vol.12
, pp. R88
-
-
Saintenac, C.1
Jiang, D.2
Akhunov, E.D.3
-
112
-
-
84905107176
-
Structural variations in plant genomes
-
Saxena, R.K., Edwards, D., Varshney, R.K., Structural variations in plant genomes. Brief. Funct. Genomics 13 (2014), 296–307.
-
(2014)
Brief. Funct. Genomics
, vol.13
, pp. 296-307
-
-
Saxena, R.K.1
Edwards, D.2
Varshney, R.K.3
-
113
-
-
85010447535
-
Genotyping-by-sequencing approaches to characterize crop genomes: choosing the right tool for the right application
-
Scheben, A., Batley, J., Edwards, D., Genotyping-by-sequencing approaches to characterize crop genomes: choosing the right tool for the right application. Plant Biotechnol. J. 15 (2016), 149–161.
-
(2016)
Plant Biotechnol. J.
, vol.15
, pp. 149-161
-
-
Scheben, A.1
Batley, J.2
Edwards, D.3
-
114
-
-
84892485253
-
Single nucleotide polymorphism genotyping using Kompetitive Allele Specific PCR (KASP): overview of the technology and its application in crop improvement
-
Semagn, K., Babu, R., Hearne, S., Olsen, M., Single nucleotide polymorphism genotyping using Kompetitive Allele Specific PCR (KASP): overview of the technology and its application in crop improvement. Mol. Breed. 33 (2014), 1–14.
-
(2014)
Mol. Breed.
, vol.33
, pp. 1-14
-
-
Semagn, K.1
Babu, R.2
Hearne, S.3
Olsen, M.4
-
115
-
-
84889019837
-
Construction of reference chromosome-scale pseudomolecules for potato: integrating the potato genome with genetic and physical maps
-
Sharma, S.K., Bolser, D., de Boer, J., Sønderkær, M., Amoros, W., Carboni, M.F., D'Ambrosio, J.M., de la Cruz, G., Di Genova, A., Douches, D.S., et al. Construction of reference chromosome-scale pseudomolecules for potato: integrating the potato genome with genetic and physical maps. G3 (Bethesda) 3 (2013), 2031–2047.
-
(2013)
G3 (Bethesda)
, vol.3
, pp. 2031-2047
-
-
Sharma, S.K.1
Bolser, D.2
de Boer, J.3
Sønderkær, M.4
Amoros, W.5
Carboni, M.F.6
D'Ambrosio, J.M.7
de la Cruz, G.8
Di Genova, A.9
Douches, D.S.10
-
116
-
-
20244367169
-
High-throughput SNP genotyping on universal bead arrays
-
Shen, R., Fan, J.B., Campbell, D., Chang, W., Chen, J., Doucet, D., Yeakley, J., Bibikova, M., Wickham Garcia, E., McBride, C., et al. High-throughput SNP genotyping on universal bead arrays. Mutat. Res. 573 (2005), 70–82.
-
(2005)
Mutat. Res.
, vol.573
, pp. 70-82
-
-
Shen, R.1
Fan, J.B.2
Campbell, D.3
Chang, W.4
Chen, J.5
Doucet, D.6
Yeakley, J.7
Bibikova, M.8
Wickham Garcia, E.9
McBride, C.10
-
117
-
-
84863672047
-
Development of a large SNP genotyping array and generation of high-density genetic maps in tomato
-
Sim, S.C., Durstewitz, G., Plieske, J., Wieseke, R., Ganal, M.W., Van Deynze, A., Hamilton, J.P., Buell, C.R., Causse, M., Wijeratne, S., et al. Development of a large SNP genotyping array and generation of high-density genetic maps in tomato. PLoS One, 7, 2012, e40563.
-
(2012)
PLoS One
, vol.7
, pp. e40563
-
-
Sim, S.C.1
Durstewitz, G.2
Plieske, J.3
Wieseke, R.4
Ganal, M.W.5
Van Deynze, A.6
Hamilton, J.P.7
Buell, C.R.8
Causse, M.9
Wijeratne, S.10
-
118
-
-
84933055390
-
Single-copy gene based 50 K SNP chip for genetic studies and molecular breeding in rice
-
Singh, N., Jayaswal, P.K., Panda, K., Mandal, P., Kumar, V., Singh, B., Mishra, S., Singh, Y., Singh, R., Rai, V., et al. Single-copy gene based 50 K SNP chip for genetic studies and molecular breeding in rice. Sci. Rep., 5, 2015, 11600.
-
(2015)
Sci. Rep.
, vol.5
, pp. 11600
-
-
Singh, N.1
Jayaswal, P.K.2
Panda, K.3
Mandal, P.4
Kumar, V.5
Singh, B.6
Mishra, S.7
Singh, Y.8
Singh, R.9
Rai, V.10
-
119
-
-
85027922241
-
QTL-seq for rapid identification of candidate genes for 100-seed weight and root/total plant dry weight ratio under rainfed conditions in chickpea
-
Singh, V.K., Khan, A.W., Jaganathan, D., Thudi, M., Roorkiwal, M., Takagi, H., Garg, V., Kumar, V., Chitikineni, A., Gaur, P.M., et al. QTL-seq for rapid identification of candidate genes for 100-seed weight and root/total plant dry weight ratio under rainfed conditions in chickpea. Plant Biotechnol. J. 14 (2016), 2110–2119.
-
(2016)
Plant Biotechnol. J.
, vol.14
, pp. 2110-2119
-
-
Singh, V.K.1
Khan, A.W.2
Jaganathan, D.3
Thudi, M.4
Roorkiwal, M.5
Takagi, H.6
Garg, V.7
Kumar, V.8
Chitikineni, A.9
Gaur, P.M.10
-
120
-
-
0030774039
-
An evaluation of the utility of SSR loci as molecular markers in maize (Zea mays L.): comparisons with data from RFLPS and pedigree
-
Smith, J.S.C., Chin, E.C.L., Shu, H., Smith, O.S., Wall, S.J., Senior, M.L., Mitchell, S.E., Kresovich, S., Ziegle, J., An evaluation of the utility of SSR loci as molecular markers in maize (Zea mays L.): comparisons with data from RFLPS and pedigree. Theor. Appl. Genet. 95 (1997), 163–170.
-
(1997)
Theor. Appl. Genet.
, vol.95
, pp. 163-170
-
-
Smith, J.S.C.1
Chin, E.C.L.2
Shu, H.3
Smith, O.S.4
Wall, S.J.5
Senior, M.L.6
Mitchell, S.E.7
Kresovich, S.8
Ziegle, J.9
-
121
-
-
8744230085
-
A high-density microsatellite consensus map for bread wheat (Triticum aestivum L.)
-
Somers, D.J., Isaac, P., Edwards, K., A high-density microsatellite consensus map for bread wheat (Triticum aestivum L.). Theor. Appl. Genet. 109 (2004), 1105–1114.
-
(2004)
Theor. Appl. Genet.
, vol.109
, pp. 1105-1114
-
-
Somers, D.J.1
Isaac, P.2
Edwards, K.3
-
122
-
-
84872832925
-
Development and evaluation of SoySNP50K, a high-density genotyping array for soybean
-
Song, Q., Hyten, D.L., Jia, G., Quigley, C.V., Fickus, E.W., Nelson, R.L., Cregan, P.B., Development and evaluation of SoySNP50K, a high-density genotyping array for soybean. PLoS One, 8, 2013, e54985.
-
(2013)
PLoS One
, vol.8
, pp. e54985
-
-
Song, Q.1
Hyten, D.L.2
Jia, G.3
Quigley, C.V.4
Fickus, E.W.5
Nelson, R.L.6
Cregan, P.B.7
-
123
-
-
84880512251
-
Epigenetics and crop improvement
-
Springer, N.M., Epigenetics and crop improvement. Trends Genet. 29 (2013), 241–247.
-
(2013)
Trends Genet.
, vol.29
, pp. 241-247
-
-
Springer, N.M.1
-
124
-
-
73649121258
-
Maize inbreds exhibit high levels of copy number variation (CNV) and presence/absence variation (PAV) in genome content
-
Springer, N.M., Ying, K., Fu, Y., Ji, T., Yeh, C.T., Jia, Y., Wu, W., Richmond, T., Kitzman, J., Rosenbaum, H., et al. Maize inbreds exhibit high levels of copy number variation (CNV) and presence/absence variation (PAV) in genome content. PLoS Genet., 5, 2009, e1000734.
-
(2009)
PLoS Genet.
, vol.5
, pp. e1000734
-
-
Springer, N.M.1
Ying, K.2
Fu, Y.3
Ji, T.4
Yeh, C.T.5
Jia, Y.6
Wu, W.7
Richmond, T.8
Kitzman, J.9
Rosenbaum, H.10
-
125
-
-
33847057776
-
Whole genome genotyping technologies on the BeadArray platform
-
Steemers, F.J., Gunderson, K.L., Whole genome genotyping technologies on the BeadArray platform. Biotechnol. J. 2 (2007), 41–49.
-
(2007)
Biotechnol. J.
, vol.2
, pp. 41-49
-
-
Steemers, F.J.1
Gunderson, K.L.2
-
126
-
-
84973657517
-
Rapid cloning of disease-resistance genes in plants using mutagenesis and sequence capture
-
Steuernagel, B., Periyannan, S.K., Hernandez-Pinzon, I., Witek, K., Rouse, M.N., Yu, G., Hatta, A., Ayliffe, M., Bariana, H., Jones, J.D.G., et al. Rapid cloning of disease-resistance genes in plants using mutagenesis and sequence capture. Nat. Biotechnol. 34 (2016), 652–655.
-
(2016)
Nat. Biotechnol.
, vol.34
, pp. 652-655
-
-
Steuernagel, B.1
Periyannan, S.K.2
Hernandez-Pinzon, I.3
Witek, K.4
Rouse, M.N.5
Yu, G.6
Hatta, A.7
Ayliffe, M.8
Bariana, H.9
Jones, J.D.G.10
-
127
-
-
84860794358
-
Development and application of a 6.5 million feature Affymetrix Genechip® for massively parallel discovery of single position polymorphisms in lettuce (Lactuca spp.)
-
Stoffel, K., van Leeuwen, H., Kozik, A., Caldwell, D., Ashrafi, H., Cui, X., Tan, X., Hill, T., Reyes-Chin-Wo, S., Truco, M.J., et al. Development and application of a 6.5 million feature Affymetrix Genechip® for massively parallel discovery of single position polymorphisms in lettuce (Lactuca spp.). BMC Genomics, 13, 2012, 185.
-
(2012)
BMC Genomics
, vol.13
, pp. 185
-
-
Stoffel, K.1
van Leeuwen, H.2
Kozik, A.3
Caldwell, D.4
Ashrafi, H.5
Cui, X.6
Tan, X.7
Hill, T.8
Reyes-Chin-Wo, S.9
Truco, M.J.10
-
128
-
-
84877843566
-
RESTseq—efficient benchtop population genomics with RESTriction Fragment SEQuencing
-
Stolle, E., Moritz, R.F., RESTseq—efficient benchtop population genomics with RESTriction Fragment SEQuencing. PLoS One, 8, 2013, e63960.
-
(2013)
PLoS One
, vol.8
, pp. e63960
-
-
Stolle, E.1
Moritz, R.F.2
-
129
-
-
84875117473
-
SLAF-seq: an efficient method of large-scale de novo SNP discovery and genotyping using high-throughput sequencing
-
Sun, X., Liu, D., Zhang, X., Li, W., Liu, H., Hong, W., Jiang, C., Guan, N., Ma, C., Zeng, H., et al. SLAF-seq: an efficient method of large-scale de novo SNP discovery and genotyping using high-throughput sequencing. PLoS One, 8, 2013, e58700.
-
(2013)
PLoS One
, vol.8
, pp. e58700
-
-
Sun, X.1
Liu, D.2
Zhang, X.3
Li, W.4
Liu, H.5
Hong, W.6
Jiang, C.7
Guan, N.8
Ma, C.9
Zeng, H.10
-
130
-
-
36749007180
-
Boron-toxicity tolerance in barley arising from efflux transporter amplification
-
Sutton, T., Baumann, U., Hayes, J., Collins, N.C., Shi, B.J., Schnurbusch, T., Hay, A., Mayo, G., Pallotta, M., Tester, M., et al. Boron-toxicity tolerance in barley arising from efflux transporter amplification. Science 318 (2007), 1446–1449.
-
(2007)
Science
, vol.318
, pp. 1446-1449
-
-
Sutton, T.1
Baumann, U.2
Hayes, J.3
Collins, N.C.4
Shi, B.J.5
Schnurbusch, T.6
Hay, A.7
Mayo, G.8
Pallotta, M.9
Tester, M.10
-
131
-
-
73149114397
-
Temperature switch PCR (TSP): robust assay design for reliable amplification and genotyping of SNPs
-
Tabone, T., Mather, D.E., Hayden, M.J., Temperature switch PCR (TSP): robust assay design for reliable amplification and genotyping of SNPs. BMC Genomics, 10, 2009, 580.
-
(2009)
BMC Genomics
, vol.10
, pp. 580
-
-
Tabone, T.1
Mather, D.E.2
Hayden, M.J.3
-
132
-
-
84875371696
-
QTL-seq: rapid mapping of quantitative trait loci in rice by whole genome resequencing of DNA from two bulked populations
-
Takagi, H., Abe, A., Yoshida, K., Kosugi, S., Natsume, S., Mitsuoka, C., Uemura, A., Utsushi, H., Tamiru, M., Takuno, S., et al. QTL-seq: rapid mapping of quantitative trait loci in rice by whole genome resequencing of DNA from two bulked populations. Plant J. 74 (2013), 174–183.
-
(2013)
Plant J.
, vol.74
, pp. 174-183
-
-
Takagi, H.1
Abe, A.2
Yoshida, K.3
Kosugi, S.4
Natsume, S.5
Mitsuoka, C.6
Uemura, A.7
Utsushi, H.8
Tamiru, M.9
Takuno, S.10
-
133
-
-
84970054496
-
RFLP mapping in plant breeding: new tools for an old science
-
Tanksley, S.D., Young, N.D., Paterson, A.H., Bonierbale, M.W., RFLP mapping in plant breeding: new tools for an old science. Nat. Biotechnol. 7 (1989), 257–264.
-
(1989)
Nat. Biotechnol.
, vol.7
, pp. 257-264
-
-
Tanksley, S.D.1
Young, N.D.2
Paterson, A.H.3
Bonierbale, M.W.4
-
134
-
-
85027272000
-
Rapid cloning of genes in hexaploid wheat using cultivar-specific long-range chromosome assembly
-
Thind, A.K., Wicker, T., Simkova, H., Fossati, D., Moullet, O., Brabant, C., Vrana, J., Dolezel, J., Krattinger, S.G., Rapid cloning of genes in hexaploid wheat using cultivar-specific long-range chromosome assembly. Nat. Biotechnol., 2017, 10.1038/nbt.3877.
-
(2017)
Nat. Biotechnol.
-
-
Thind, A.K.1
Wicker, T.2
Simkova, H.3
Fossati, D.4
Moullet, O.5
Brabant, C.6
Vrana, J.7
Dolezel, J.8
Krattinger, S.G.9
-
135
-
-
84994710620
-
Genetic architecture of plant stress resistance: multi-trait genome-wide association mapping
-
Thoen, M.P.M., Davila Olivas, N.H., Kloth, K.J., Coolen, S., Huang, P.-P., Aarts, M.G.M., Bac-Molenaar, J.A., Bakker, J., Bouwmeester, H.J., Broekgaarden, C., et al. Genetic architecture of plant stress resistance: multi-trait genome-wide association mapping. New Phytol. 213 (2017), 1346–1362.
-
(2017)
New Phytol.
, vol.213
, pp. 1346-1362
-
-
Thoen, M.P.M.1
Davila Olivas, N.H.2
Kloth, K.J.3
Coolen, S.4
Huang, P.-P.5
Aarts, M.G.M.6
Bac-Molenaar, J.A.7
Bakker, J.8
Bouwmeester, H.J.9
Broekgaarden, C.10
-
136
-
-
84924420104
-
High-throughput SNP genotyping to accelerate crop improvement
-
Thomson, M.J., High-throughput SNP genotyping to accelerate crop improvement. Plant Breed. Biotechnol. 2 (2014), 195–212.
-
(2014)
Plant Breed. Biotechnol.
, vol.2
, pp. 195-212
-
-
Thomson, M.J.1
-
137
-
-
84943756057
-
A systematic study of normalization methods for Infinium 450K methylation data using whole-genome bisulfite sequencing data
-
Ting, W., Guan, W., Lin, J., Boutaoui, N., Canino, G., Luo, J., Celedón, J.C., Chen, W., A systematic study of normalization methods for Infinium 450K methylation data using whole-genome bisulfite sequencing data. Epigenetics 10 (2015), 662–669.
-
(2015)
Epigenetics
, vol.10
, pp. 662-669
-
-
Ting, W.1
Guan, W.2
Lin, J.3
Boutaoui, N.4
Canino, G.5
Luo, J.6
Celedón, J.C.7
Chen, W.8
-
138
-
-
84908430289
-
A SNP genotyping array for hexaploid oat
-
Tinker, N.A., Chao, S., Lazo, G.R., Oliver, R.E., Huang, Y.F., Poland, J.A., Jellen, E.N., Maughan, P.J., Kilian, A., Jackson, E.W., A SNP genotyping array for hexaploid oat. Plant Genome, 7, 2014, 3.
-
(2014)
Plant Genome
, vol.7
, pp. 3
-
-
Tinker, N.A.1
Chao, S.2
Lazo, G.R.3
Oliver, R.E.4
Huang, Y.F.5
Poland, J.A.6
Jellen, E.N.7
Maughan, P.J.8
Kilian, A.9
Jackson, E.W.10
-
139
-
-
84891541179
-
ezRAD: a simplified method for genomic genotyping in non-model organisms
-
Toonen, R.J., Puritz, J.B., Forsman, Z.H., Whitney, J.L., Fernandez-Silva, I., Andrews, K.R., Bird, C.E., ezRAD: a simplified method for genomic genotyping in non-model organisms. PeerJ, 1, 2013, e203.
-
(2013)
PeerJ
, vol.1
, pp. e203
-
-
Toonen, R.J.1
Puritz, J.B.2
Forsman, Z.H.3
Whitney, J.L.4
Fernandez-Silva, I.5
Andrews, K.R.6
Bird, C.E.7
-
140
-
-
84861472550
-
Sequence-based genotyping for marker discovery and co-dominant scoring in germplasm and populations
-
Truong, H.T., Ramos, A.M., Yalcin, F., de Ruiter, M., van der Poel, H.J., Huvenaars, K.H., Hogers, R.C., van Enckevort, L.J., Janssen, A., van Orsouw, N.J., et al. Sequence-based genotyping for marker discovery and co-dominant scoring in germplasm and populations. PLoS One, 7, 2012, e37565.
-
(2012)
PLoS One
, vol.7
, pp. e37565
-
-
Truong, H.T.1
Ramos, A.M.2
Yalcin, F.3
de Ruiter, M.4
van der Poel, H.J.5
Huvenaars, K.H.6
Hogers, R.C.7
van Enckevort, L.J.8
Janssen, A.9
van Orsouw, N.J.10
-
141
-
-
84856598973
-
Development of a research platform for dissecting phenotype-genotype associations in rice (Oryza spp.)
-
Tung, C.-W., Zhao, K., Wright, M., Ali, M.L., Jung, J., Kimball, J., Tyagi, W., Thomson, M.J., McNally, K., Leung, H., et al. Development of a research platform for dissecting phenotype-genotype associations in rice (Oryza spp.). Rice 3 (2010), 205–217.
-
(2010)
Rice
, vol.3
, pp. 205-217
-
-
Tung, C.-W.1
Zhao, K.2
Wright, M.3
Ali, M.L.4
Jung, J.5
Kimball, J.6
Tyagi, W.7
Thomson, M.J.8
McNally, K.9
Leung, H.10
-
142
-
-
84908001372
-
A powerful tool for genome analysis in maize: development and evaluation of the high density 600 k SNP genotyping array
-
Unterseer, S., Bauer, E., Haberer, G., Seidel, M., Knaak, C., Ouzunova, M., Meitinger, T., Strom, T.M., Fries, R., Pausch, H., et al. A powerful tool for genome analysis in maize: development and evaluation of the high density 600 k SNP genotyping array. BMC Genomics, 15, 2014, 823.
-
(2014)
BMC Genomics
, vol.15
, pp. 823
-
-
Unterseer, S.1
Bauer, E.2
Haberer, G.3
Seidel, M.4
Knaak, C.5
Ouzunova, M.6
Meitinger, T.7
Strom, T.M.8
Fries, R.9
Pausch, H.10
-
143
-
-
84924028427
-
Genetic and molecular bases of yield-associated traits: a translational biology approach between rice and wheat
-
Valluru, R., Reynolds, M.P., Salse, J., Genetic and molecular bases of yield-associated traits: a translational biology approach between rice and wheat. Theor. Appl. Genet. 127 (2014), 1463–1489.
-
(2014)
Theor. Appl. Genet.
, vol.127
, pp. 1463-1489
-
-
Valluru, R.1
Reynolds, M.P.2
Salse, J.3
-
144
-
-
84907498517
-
Breeding better cultivars, faster: applications of new technologies for the rapid deployment of superior horticultural tree crops
-
van Nocker, S., Gardiner, S.E., Breeding better cultivars, faster: applications of new technologies for the rapid deployment of superior horticultural tree crops. Hortic. Res., 1, 2014, 14022.
-
(2014)
Hortic. Res.
, vol.1
, pp. 14022
-
-
van Nocker, S.1
Gardiner, S.E.2
-
145
-
-
84882664509
-
Sequence-based SNP genotyping in durum wheat
-
van Poecke, R.M., Maccaferri, M., Tang, J., Truong, H.T., Janssen, A., van Orsouw, N.J., Salvi, S., Sanguineti, M.C., Tuberosa, R., van der Vossen, E.A., Sequence-based SNP genotyping in durum wheat. Plant Biotechnol. J. 11 (2013), 809–817.
-
(2013)
Plant Biotechnol. J.
, vol.11
, pp. 809-817
-
-
van Poecke, R.M.1
Maccaferri, M.2
Tang, J.3
Truong, H.T.4
Janssen, A.5
van Orsouw, N.J.6
Salvi, S.7
Sanguineti, M.C.8
Tuberosa, R.9
van der Vossen, E.A.10
-
146
-
-
84946593025
-
Exciting journey of 10 years from genomes to fields and markets: some success stories of genomics-assisted breeding in chickpea, pigeonpea and groundnut
-
Varshney, R.K., Exciting journey of 10 years from genomes to fields and markets: some success stories of genomics-assisted breeding in chickpea, pigeonpea and groundnut. Plant Sci. 242 (2016), 98–107.
-
(2016)
Plant Sci.
, vol.242
, pp. 98-107
-
-
Varshney, R.K.1
-
147
-
-
11344276529
-
Genic microsatellite markers in plants: features and applications
-
Varshney, R.K., Graner, A., Sorrells, M.E., Genic microsatellite markers in plants: features and applications. Trends Biotechnol. 23 (2005), 48–55.
-
(2005)
Trends Biotechnol.
, vol.23
, pp. 48-55
-
-
Varshney, R.K.1
Graner, A.2
Sorrells, M.E.3
-
148
-
-
34047186958
-
A high density barley microsatellite consensus map with 775 SSR loci
-
Varshney, R.K., Marcel, T.C., Ramsay, L., Russell, J., Roder, M.S., Stein, N., Waugh, R., Langridge, P., Niks, R.E., Graner, A., A high density barley microsatellite consensus map with 775 SSR loci. Theor. Appl. Genet. 114 (2007), 1091–1103.
-
(2007)
Theor. Appl. Genet.
, vol.114
, pp. 1091-1103
-
-
Varshney, R.K.1
Marcel, T.C.2
Ramsay, L.3
Russell, J.4
Roder, M.S.5
Stein, N.6
Waugh, R.7
Langridge, P.8
Niks, R.E.9
Graner, A.10
-
149
-
-
68949186256
-
Next-generation sequencing technologies and their implications for crop genetics and breeding
-
Varshney, R.K., Nayak, S.N., May, G.D., Jackson, S.A., Next-generation sequencing technologies and their implications for crop genetics and breeding. Trends Biotechnol. 27 (2009), 522–530.
-
(2009)
Trends Biotechnol.
, vol.27
, pp. 522-530
-
-
Varshney, R.K.1
Nayak, S.N.2
May, G.D.3
Jackson, S.A.4
-
150
-
-
84946578164
-
Analytical and decision support tools for genomics-assisted breeding
-
Varshney, R.K., Singh, V.K., Hickey, J.M., Xun, X., Marshall, D.F., Wang, J., Edwards, D., Ribaut, J.-M., Analytical and decision support tools for genomics-assisted breeding. Trends Plant Sci. 21 (2016), 354–363.
-
(2016)
Trends Plant Sci.
, vol.21
, pp. 354-363
-
-
Varshney, R.K.1
Singh, V.K.2
Hickey, J.M.3
Xun, X.4
Marshall, D.F.5
Wang, J.6
Edwards, D.7
Ribaut, J.-M.8
-
151
-
-
84860015620
-
Development and evaluation of a 9K SNP array for peach by internationally coordinated SNP detection and validation in breeding germplasm
-
Verde, I., Bassil, N., Scalabrin, S., Gilmore, B., Lawley, C.T., Gasic, K., Micheletti, D., Rosyara, U.R., Cattonaro, F., Vendramin, E., et al. Development and evaluation of a 9K SNP array for peach by internationally coordinated SNP detection and validation in breeding germplasm. PLoS One, 7, 2012, e35668.
-
(2012)
PLoS One
, vol.7
, pp. e35668
-
-
Verde, I.1
Bassil, N.2
Scalabrin, S.3
Gilmore, B.4
Lawley, C.T.5
Gasic, K.6
Micheletti, D.7
Rosyara, U.R.8
Cattonaro, F.9
Vendramin, E.10
-
152
-
-
84947019054
-
Development and analysis of a 20K SNP array for potato (Solanum tuberosum): an insight into the breeding history
-
Vos, P.G., Uitdewilligen, J.G., Voorrips, R.E., Visser, R.G., van Eck, H.J., Development and analysis of a 20K SNP array for potato (Solanum tuberosum): an insight into the breeding history. Theor. Appl. Genet. 128 (2015), 2387–2401.
-
(2015)
Theor. Appl. Genet.
, vol.128
, pp. 2387-2401
-
-
Vos, P.G.1
Uitdewilligen, J.G.2
Voorrips, R.E.3
Visser, R.G.4
van Eck, H.J.5
-
153
-
-
84921934205
-
Simultaneous editing of three homoeoalleles in hexaploid bread wheat confers heritable resistance to powdery mildew
-
Wang, Y., Cheng, X., Shan, Q., Zhang, Y., Liu, J., Gao, C., Qiu, J.L., Simultaneous editing of three homoeoalleles in hexaploid bread wheat confers heritable resistance to powdery mildew. Nat. Biotechnol. 32 (2014), 947–951.
-
(2014)
Nat. Biotechnol.
, vol.32
, pp. 947-951
-
-
Wang, Y.1
Cheng, X.2
Shan, Q.3
Zhang, Y.4
Liu, J.5
Gao, C.6
Qiu, J.L.7
-
154
-
-
84872191379
-
Saturated linkage map construction in Rubus idaeus using genotyping by sequencing and genome-independent imputation
-
Ward, J.A., Bhangoo, J., Fernandez-Fernandez, F., Moore, P., Swanson, J.D., Viola, R., Velasco, R., Bassil, N., Weber, C.A., Sargent, D.J., Saturated linkage map construction in Rubus idaeus using genotyping by sequencing and genome-independent imputation. BMC Genomics, 14, 2013, 2.
-
(2013)
BMC Genomics
, vol.14
, pp. 2
-
-
Ward, J.A.1
Bhangoo, J.2
Fernandez-Fernandez, F.3
Moore, P.4
Swanson, J.D.5
Viola, R.6
Velasco, R.7
Bassil, N.8
Weber, C.A.9
Sargent, D.J.10
-
155
-
-
84953792305
-
High-density SNP genotyping array for hexaploid wheat and its secondary and tertiary gene pool
-
Winfield, M.O., Allen, A.M., Burridge, A.J., Barker, G.L., Benbow, H.R., Wilkinson, P.A., Coghill, J., Waterfall, C., Davassi, A., Scopes, G., et al. High-density SNP genotyping array for hexaploid wheat and its secondary and tertiary gene pool. Plant Biotechnol. J. 14 (2016), 1195–1206.
-
(2016)
Plant Biotechnol. J.
, vol.14
, pp. 1195-1206
-
-
Winfield, M.O.1
Allen, A.M.2
Burridge, A.J.3
Barker, G.L.4
Benbow, H.R.5
Wilkinson, P.A.6
Coghill, J.7
Waterfall, C.8
Davassi, A.9
Scopes, G.10
-
156
-
-
84974604412
-
Accelerated cloning of a potato late blight-resistance gene using RenSeq and SMRT sequencing
-
Witek, K., Jupe, F., Witek, A.I., Baker, D., Clark, M.D., Jones, J.D., Accelerated cloning of a potato late blight-resistance gene using RenSeq and SMRT sequencing. Nat. Biotechnol. 34 (2016), 656–660.
-
(2016)
Nat. Biotechnol.
, vol.34
, pp. 656-660
-
-
Witek, K.1
Jupe, F.2
Witek, A.I.3
Baker, D.4
Clark, M.D.5
Jones, J.D.6
-
157
-
-
84913529844
-
High-density genetic linkage map construction and identification of fruit-related QTLs in pear using SNP and SSR markers
-
Wu, J., Li, L.T., Li, M., Khan, M.A., Li, X.G., Chen, H., Yin, H., Zhang, S.L., High-density genetic linkage map construction and identification of fruit-related QTLs in pear using SNP and SSR markers. J. Exp. Bot. 65 (2014), 5771–5781.
-
(2014)
J. Exp. Bot.
, vol.65
, pp. 5771-5781
-
-
Wu, J.1
Li, L.T.2
Li, M.3
Khan, M.A.4
Li, X.G.5
Chen, H.6
Yin, H.7
Zhang, S.L.8
-
158
-
-
84937839170
-
Multiply to conquer: copy number variations at Ppd-B1 and Vrn-A1 facilitate global adaptation in wheat
-
Wurschum, T., Boeven, P.H., Langer, S.M., Longin, C.F., Leiser, W.L., Multiply to conquer: copy number variations at Ppd-B1 and Vrn-A1 facilitate global adaptation in wheat. BMC Genet., 16, 2015, 96.
-
(2015)
BMC Genet.
, vol.16
, pp. 96
-
-
Wurschum, T.1
Boeven, P.H.2
Langer, S.M.3
Longin, C.F.4
Leiser, W.L.5
-
159
-
-
85014553407
-
Genome-wide association studies in maize: praise and stargaze
-
Xiao, Y., Liu, H., Wu, L., Warburton, M., Yan, J., Genome-wide association studies in maize: praise and stargaze. Mol. Plant 10 (2017), 359–374.
-
(2017)
Mol. Plant
, vol.10
, pp. 359-374
-
-
Xiao, Y.1
Liu, H.2
Wu, L.3
Warburton, M.4
Yan, J.5
-
160
-
-
84959467829
-
Envirotyping for deciphering environmental impacts on crop plants
-
Xu, Y., Envirotyping for deciphering environmental impacts on crop plants. Theor. Appl. Genet. 129 (2016), 653–673.
-
(2016)
Theor. Appl. Genet.
, vol.129
, pp. 653-673
-
-
Xu, Y.1
-
161
-
-
42449139080
-
Marker-assisted selection in plant breeding: from publications to practice
-
Xu, Y., Crouch, J.H., Marker-assisted selection in plant breeding: from publications to practice. Crop Sci. 48 (2008), 391–407.
-
(2008)
Crop Sci.
, vol.48
, pp. 391-407
-
-
Xu, Y.1
Crouch, J.H.2
-
162
-
-
84906663723
-
Predicting hybrid performance in rice using genomic best linear unbiased prediction
-
Xu, S., Zhu, D., Zhang, Q., Predicting hybrid performance in rice using genomic best linear unbiased prediction. Proc. Natl. Acad. Sci. USA 111 (2014), 12456–12461.
-
(2014)
Proc. Natl. Acad. Sci. USA
, vol.111
, pp. 12456-12461
-
-
Xu, S.1
Zhu, D.2
Zhang, Q.3
-
163
-
-
84922263443
-
A high-density genetic map of cucumber derived from Specific Length Amplified Fragment sequencing (SLAF-seq)
-
Xu, X., Xu, R., Zhu, B., Yu, T., Qu, W., Lu, L., Xu, Q., Qi, X., Chen, X., A high-density genetic map of cucumber derived from Specific Length Amplified Fragment sequencing (SLAF-seq). Front. Plant Sci., 5, 2014, 768.
-
(2014)
Front. Plant Sci.
, vol.5
, pp. 768
-
-
Xu, X.1
Xu, R.2
Zhu, B.3
Yu, T.4
Qu, W.5
Lu, L.6
Xu, Q.7
Qi, X.8
Chen, X.9
-
164
-
-
85013108613
-
Development of a maize 55 K SNP array with improved genome coverage for molecular breeding
-
Xu, C., Ren, Y., Jian, Y., Guo, Z., Zhang, Y., Xie, C., Fu, J., Wang, H., Wang, G., Xu, Y., et al. Development of a maize 55 K SNP array with improved genome coverage for molecular breeding. Mol. Breed., 37, 2017, 20.
-
(2017)
Mol. Breed.
, vol.37
, pp. 20
-
-
Xu, C.1
Ren, Y.2
Jian, Y.3
Guo, Z.4
Zhang, Y.5
Xie, C.6
Fu, J.7
Wang, H.8
Wang, G.9
Xu, Y.10
-
165
-
-
85024491712
-
Enhancing genetic gain in the molecular breeding era
-
Xu, Y., Li, P., Zou, C., Lu, Y., Xie, C., Zhang, S., Prasanna, B.M., Enhancing genetic gain in the molecular breeding era. J. Exp. Bot 68 (2017), 2641–2666.
-
(2017)
J. Exp. Bot
, vol.68
, pp. 2641-2666
-
-
Xu, Y.1
Li, P.2
Zou, C.3
Lu, Y.4
Xie, C.5
Zhang, S.6
Prasanna, B.M.7
-
166
-
-
77949517584
-
Genetic characterization and linkage disequilibrium estimation of a global maize collection using SNP markers
-
Yan, J., Shah, T., Warburton, M.L., Buckler, E.S., McMullen, M.D., Crouch, J., Genetic characterization and linkage disequilibrium estimation of a global maize collection using SNP markers. PLoS One, 4, 2009, e8451.
-
(2009)
PLoS One
, vol.4
, pp. e8451
-
-
Yan, J.1
Shah, T.2
Warburton, M.L.3
Buckler, E.S.4
McMullen, M.D.5
Crouch, J.6
-
167
-
-
84865706478
-
Application of next-generation sequencing for rapid marker development in molecular plant breeding: a case study on anthracnose disease resistance in Lupinus angustifolius L
-
Yang, H., Tao, Y., Zheng, Z., Li, C., Sweetingham, M.W., Howieson, J.G., Application of next-generation sequencing for rapid marker development in molecular plant breeding: a case study on anthracnose disease resistance in Lupinus angustifolius L. BMC Genomics, 13, 2012, 318.
-
(2012)
BMC Genomics
, vol.13
, pp. 318
-
-
Yang, H.1
Tao, Y.2
Zheng, Z.3
Li, C.4
Sweetingham, M.W.5
Howieson, J.G.6
-
168
-
-
84944893703
-
Extreme-phenotype genome-wide association study (XP-GWAS): a method for identifying trait-associated variants by sequencing pools of individuals selected from a diversity panel
-
Yang, J., Jiang, H., Yeh, C.T., Yu, J., Jeddeloh, J.A., Nettleton, D., Schnable, P.S., Extreme-phenotype genome-wide association study (XP-GWAS): a method for identifying trait-associated variants by sequencing pools of individuals selected from a diversity panel. Plant J. 84 (2015), 587–596.
-
(2015)
Plant J.
, vol.84
, pp. 587-596
-
-
Yang, J.1
Jiang, H.2
Yeh, C.T.3
Yu, J.4
Jeddeloh, J.A.5
Nettleton, D.6
Schnable, P.S.7
-
169
-
-
84975256248
-
Genome-wide association study using whole-genome sequencing rapidly identifies new genes influencing agronomic traits in rice
-
Yano, K., Yamamoto, E., Aya, K., Takeuchi, H., Lo, P.C., Hu, L., Yamasaki, M., Yoshida, S., Kitano, H., Hirano, K., et al. Genome-wide association study using whole-genome sequencing rapidly identifies new genes influencing agronomic traits in rice. Nat. Genet. 48 (2016), 927–934.
-
(2016)
Nat. Genet.
, vol.48
, pp. 927-934
-
-
Yano, K.1
Yamamoto, E.2
Aya, K.3
Takeuchi, H.4
Lo, P.C.5
Hu, L.6
Yamasaki, M.7
Yoshida, S.8
Kitano, H.9
Hirano, K.10
-
170
-
-
84891153631
-
A whole-genome SNP array (RICE6K) for genomic breeding in rice
-
Yu, H., Xie, W., Li, J., Zhou, F., Zhang, Q., A whole-genome SNP array (RICE6K) for genomic breeding in rice. Plant Biotech. J. 12 (2014), 28–37.
-
(2014)
Plant Biotech. J.
, vol.12
, pp. 28-37
-
-
Yu, H.1
Xie, W.2
Li, J.3
Zhou, F.4
Zhang, Q.5
-
171
-
-
79960559334
-
Detection of copy number variations in rice using array-based comparative genomic hybridization
-
Yu, P., Wang, C., Xu, Q., Feng, Y., Yuan, X., Yu, H., Wang, Y., Tang, S., Wei, X., Detection of copy number variations in rice using array-based comparative genomic hybridization. BMC Genomics, 12, 2011, 372.
-
(2011)
BMC Genomics
, vol.12
, pp. 372
-
-
Yu, P.1
Wang, C.2
Xu, Q.3
Feng, Y.4
Yuan, X.5
Yu, H.6
Wang, Y.7
Tang, S.8
Wei, X.9
-
172
-
-
84944355178
-
A high-density genetic map for P genome of Agropyron Gaertn. based on specific-locus amplified fragment sequencing (SLAF-seq)
-
Zhang, Y., Zhang, J., Huang, L., Gao, A., Zhang, J., Yang, X., Liu, W., Li, X., Li, L., A high-density genetic map for P genome of Agropyron Gaertn. based on specific-locus amplified fragment sequencing (SLAF-seq). Planta 242 (2015), 1335–1347.
-
(2015)
Planta
, vol.242
, pp. 1335-1347
-
-
Zhang, Y.1
Zhang, J.2
Huang, L.3
Gao, A.4
Zhang, J.5
Yang, X.6
Liu, W.7
Li, X.8
Li, L.9
-
173
-
-
84936931699
-
Genome-wide mapping of structural variations reveals a copy number variant that determines reproductive morphology in cucumber
-
Zhang, Z., Mao, L., Chen, H., Bu, F., Li, G., Sun, J., Li, S., Sun, H., Jiao, C., Blakely, R., et al. Genome-wide mapping of structural variations reveals a copy number variant that determines reproductive morphology in cucumber. Plant Cell 27 (2015), 1595–1604.
-
(2015)
Plant Cell
, vol.27
, pp. 1595-1604
-
-
Zhang, Z.1
Mao, L.2
Chen, H.3
Bu, F.4
Li, G.5
Sun, J.6
Li, S.7
Sun, H.8
Jiao, C.9
Blakely, R.10
-
174
-
-
84952685588
-
Genome-based establishment of a high-yielding heterotic pattern for hybrid wheat breeding
-
Zhao, Y., Li, Z., Liu, G., Jiang, Y., Maurer, H.P., Wurschum, T., Mock, H.P., Matros, A., Ebmeyer, E., Schachschneider, R., et al. Genome-based establishment of a high-yielding heterotic pattern for hybrid wheat breeding. Proc. Natl. Acad. Sci. USA 112 (2015), 15624–15629.
-
(2015)
Proc. Natl. Acad. Sci. USA
, vol.112
, pp. 15624-15629
-
-
Zhao, Y.1
Li, Z.2
Liu, G.3
Jiang, Y.4
Maurer, H.P.5
Wurschum, T.6
Mock, H.P.7
Matros, A.8
Ebmeyer, E.9
Schachschneider, R.10
-
175
-
-
81355147024
-
Genome-wide patterns of genetic variation in sweet and grain sorghum (Sorghum bicolor)
-
Zheng, L.Y., Guo, X.S., He, B., Sun, L.J., Peng, Y., Dong, S.S., Liu, T.F., Jiang, S., Ramachandran, S., Liu, C.M., et al. Genome-wide patterns of genetic variation in sweet and grain sorghum (Sorghum bicolor). Genome Biol., 12, 2011, R114.
-
(2011)
Genome Biol.
, vol.12
, pp. R114
-
-
Zheng, L.Y.1
Guo, X.S.2
He, B.3
Sun, L.J.4
Peng, Y.5
Dong, S.S.6
Liu, T.F.7
Jiang, S.8
Ramachandran, S.9
Liu, C.M.10
-
176
-
-
85027918798
-
Bulked sample analysis in genetics, genomics and crop improvement
-
Zou, C., Wang, P., Xu, Y., Bulked sample analysis in genetics, genomics and crop improvement. Plant Biotechnol. J. 14 (2016), 1941–1955.
-
(2016)
Plant Biotechnol. J.
, vol.14
, pp. 1941-1955
-
-
Zou, C.1
Wang, P.2
Xu, Y.3
|