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1
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79959894144
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Agricultural biotechnology for crop improvement in a variable climate: hope or hype?
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Varshney R.K., Bansal K.C., Aggarwal P.K., Datta S.K., Craufurd P.Q. Agricultural biotechnology for crop improvement in a variable climate: hope or hype?. Trends Plant Sci. 2011, 16:363-371.
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Trends Plant Sci.
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Varshney, R.K.1
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2
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84887989292
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Achievements and prospects of genomics-assisted breeding in three legume crops of the semi-arid tropics
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Varshney R.K., Mohan S.M., Gaur P.M., Gangarao N.V.P.R., Pandey M.K., Bohra A., Sawargaonkar S.L., Chitikineni A., Kimurto P.K., Janila P., Saxena K.B., Fikre A., Sharma M., Rathore A., Pratap A., Tripathi S., Datta S., Chaturvedi S.K., Mallikarjuna N., Anuradha G., Barbar A., Choughary A.K., Mhase M.B., Bharadwaj Ch., Mannur D.M., Harer P.N., Guo B., Liang X., Nadarajan N., Gowda C.L.L. Achievements and prospects of genomics-assisted breeding in three legume crops of the semi-arid tropics. Biotechnol. Adv. 2013, 31:1120-1134.
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Biotechnol. Adv.
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Varshney, R.K.1
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Pandey, M.K.5
Bohra, A.6
Sawargaonkar, S.L.7
Chitikineni, A.8
Kimurto, P.K.9
Janila, P.10
Saxena, K.B.11
Fikre, A.12
Sharma, M.13
Rathore, A.14
Pratap, A.15
Tripathi, S.16
Datta, S.17
Chaturvedi, S.K.18
Mallikarjuna, N.19
Anuradha, G.20
Barbar, A.21
Choughary, A.K.22
Mhase, M.B.23
Bharadwaj, C.24
Mannur, D.M.25
Harer, P.N.26
Guo, B.27
Liang, X.28
Nadarajan, N.29
Gowda, C.L.L.30
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3
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84908441436
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Translational genomics in agriculture: some examples in grain legumes
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Varshney R.K., Kudapa H., Pazhamala L., Chitikineni A., Thudi M., Bohra A., Gaur P.M., Janila P., Fikre A., Kimurto P., Ellis N. Translational genomics in agriculture: some examples in grain legumes. Crit. Rev. Plant Sci. 2015, 34:169-194.
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Crit. Rev. Plant Sci.
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Varshney, R.K.1
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Bohra, A.6
Gaur, P.M.7
Janila, P.8
Fikre, A.9
Kimurto, P.10
Ellis, N.11
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4
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84901683354
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Genomics-assisted breeding in the major pulse crops of developing countries: present status and prospects
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Bohra A., Pandey M.K., Jha U.C., Singh B., Singh I.P., Datta D., Chaturvedi S.K., Nadarajan N., Varshney R.K. Genomics-assisted breeding in the major pulse crops of developing countries: present status and prospects. Theor. Appl. Genet. 2014, 127:1263-1291.
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Bohra, A.1
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Datta, D.6
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Nadarajan, N.8
Varshney, R.K.9
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5
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79954924396
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Legume genomics and breeding
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Varshney R.K., Thudi M., May G.D., Jackson S.A. Legume genomics and breeding. Plant Breed. Rev. 2010, 33:257-304.
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Plant Breed. Rev.
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Varshney, R.K.1
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71049166845
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A comprehensive resource of drought- and salinity- responsive ESTs for gene discovery and marker development in chickpea (Cicer arietinum L.)
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Varshney R.K., Hiremath P.J., Lekha P., Kashiwagi J., Balaji J., Deokar A.A., Vadez V., Xiao Y., Srinivasan R., Gaur P.M., Siddique K.H.M., Town C.D., Hoisington D.A. A comprehensive resource of drought- and salinity- responsive ESTs for gene discovery and marker development in chickpea (Cicer arietinum L.). BMC Genomics 2009, 10:523.
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BMC Genomics
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Varshney, R.K.1
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77949483522
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The first set of EST resource for gene discovery and marker development in pigeonpea (Cajanus cajan L.)
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Raju N.L., Gnanesh B.N., Lekha P., Jayashree B., Pande S., Hiremath P.J., Byregowda M., Singh N.K., Varshney R.K. The first set of EST resource for gene discovery and marker development in pigeonpea (Cajanus cajan L.). BMC Plant Biol. 2010, 10:45.
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BMC Plant Biol.
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Raju, N.L.1
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79959287492
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Development and use of genic molecular markers (GMMs) for construction of a transcript map of chickpea (Cicer arietinum L.)
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Gujaria N., Kumar A., Dauthal P., Dubey A., Hiremath P.J., Bhanu Prakash A., Farmer A., Bhide M., Shah T., Gaur P.M., Upadhyaya H.D., Bhatia S., Cook D.R., May G.D., Varshney R.K. Development and use of genic molecular markers (GMMs) for construction of a transcript map of chickpea (Cicer arietinum L.). Theor. Appl. Genet. 2011, 122:1577-1589.
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9
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84863564349
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Large-scale development of cost-effective SNP marker assays for diversity assessment and genetic mapping in chickpea and comparative mapping in legumes
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Hiremath P.J., Kumar A., Penmetsa R.V., Farmer A., Schlueter J.A., Chamarthi S.K., Whaley A.M., Carrasquilla-Garcia N., Gaur P.M., Upadhyaya H.D., Kavikishor P.B., Shah T.M., Cook D.R., Varshney R.K. Large-scale development of cost-effective SNP marker assays for diversity assessment and genetic mapping in chickpea and comparative mapping in legumes. Plant Biotechnol. J. 2012, 10:716-732.
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10
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84862683319
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Genetic patterns of domestication in pigeonpea (Cajanus cajan (L.) Millsp.) and wild Cajanus relatives
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Kassa M.T., Penmetsa R.V., Carrasquilla-Garcia N., Sarma B.K., Datta S., Upadhyaya H.D., Varshney R.K., Wettberg E.J.B., Cook D.R. Genetic patterns of domestication in pigeonpea (Cajanus cajan (L.) Millsp.) and wild Cajanus relatives. PLoS One 2012, 6:e39563.
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Large-scale development of cost-effective single-nucleotide polymorphism marker assays for genetic mapping in pigeonpea and comparative mapping in legumes
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Saxena R.K., Penmetsa R.V., Upadhyaya H.D., Kumar A., Carrasquilla-Garcia N., Schlueter J.A., Farmer A., Whaley A.M., Sarma B.K., May G.D., Cook D.R., Varshney R.K. Large-scale development of cost-effective single-nucleotide polymorphism marker assays for genetic mapping in pigeonpea and comparative mapping in legumes. DNA Res. 2012, 19:449-461.
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Defining the transcriptome assembly and its use for genome dynamics and transcriptome profiling studies in pigeonpea (Cajanus cajan L.)
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Dubey A., Farmer A., Schlueter J., Cannon S.B., Abernathy B., Tuteja R., Woodward J., Shah T., Mulasmanovic B., Kudapa H., Raju N.L., Gothalwal R., Pande S., Xiao Y., Town C.D., Singh N.K., May G.D., Jackson S., Varshney R.K. Defining the transcriptome assembly and its use for genome dynamics and transcriptome profiling studies in pigeonpea (Cajanus cajan L.). DNA Res. 2011, 18:153-164.
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80052500402
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Large-scale transcriptome analysis in chickpea (Cicer arietinum L.), an orphan legume crop of the semi-arid tropics of Asia and Africa
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Hiremath P.J., Farmer A., Cannon S.B., Woodward J., Kudapa H., Tuteja R., Kumar A., Bhanuprakash A., Mulaosmanovic B., Gujaria N., Laxmanan K., Pooran M.G., Polavarapu K.K., Shah T., Srinivasan R., Lohse M., Xiao Y., Christopher D.T., Cook D.R., May G.D., Varshney R.K. Large-scale transcriptome analysis in chickpea (Cicer arietinum L.), an orphan legume crop of the semi-arid tropics of Asia and Africa. Plant Biotechnol. J. 2011, 9:922-931.
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84863135476
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A comprehensive transcriptome assembly of pigeonpea (Cajanus cajan L.) using Sanger and second-generation sequencing platforms
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Kudapa H., Bharti A.K., Cannon S.B., Farmer A.D., Mulaosmanovic B., Kramer R., Bohra A., Weeks N.T., Crow J.A., Tuteja R., Shah T., Dutta S., Gupta D.K., Singh A., Gaikwad K., Sharma T.R., May G.D., Singh N.K., Varshney R.K. A comprehensive transcriptome assembly of pigeonpea (Cajanus cajan L.) using Sanger and second-generation sequencing platforms. Mol. Plant 2012, 5:1020-1028.
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Mol. Plant
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84890768974
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Single nucleotide polymorphism-based genetic diversity in the reference set of peanut (Arachis spp.) by developing and applying cost-effective kompetitive allele specific polymerase chain reaction genotyping assays
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Khera P., Upadhyaya H.D., Pandey M.K., Roorkiwal M., Sriswathi M., Janila P., Guo Y., McKain M.R., Nagy E.D., Knapp S.J., Leebens-Mack J., Conner J.A., Ozias-Akins P., Varshney R.K. Single nucleotide polymorphism-based genetic diversity in the reference set of peanut (Arachis spp.) by developing and applying cost-effective kompetitive allele specific polymerase chain reaction genotyping assays. Plant Genome 2013, 6:3.
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Plant Genome
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84883746158
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Single nucleotide polymorphism genotyping for breeding and genetics applications in chickpea and pigeonpea using the BeadXpress platform
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Roorkiwal M., Sawargaonkar S.L., Chitikineni A., Thudi M., Saxena R.K., Upadhyaya H.D., Vales M.I., Riera-Lizarazu O., Varshney R.K. Single nucleotide polymorphism genotyping for breeding and genetics applications in chickpea and pigeonpea using the BeadXpress platform. Plant Genome 2013, 6(2).
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Plant Genome
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Draft genome sequence of pigeonpea (Cajanus cajan), an orphan legume crop of resource-poor farmers
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Varshney R.K., Chen W., Li Y., Bharthi A.K., Saxena R.K., Schlueter J.A., Donoghue M.A., Azam S., Fan G., Whaley A.M., Farmer A., Sheridan J., Iwata A., Tuteja R., Penmetsa R.V., Wu W., Upadhyaya H.D., Yang S., Shah T., Saxena K.B., Michael T., McCombie W.R., Yang B., Zhang G., Yang H., Wang J., Spillane C., Cook D.R., May G.D., Xu X., Jackson S.A. Draft genome sequence of pigeonpea (Cajanus cajan), an orphan legume crop of resource-poor farmers. Nat. Biotechnol. 2012, 30:83-89.
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Draft genome sequence of chickpea (Cicer arietinum) provides a resource for trait improvement
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Varshney R.K., Song C., Saxena R.K., Azam S., Yu S., Sharpe A.G., Cannon S., Baek J., Rosen B.D., Taran B., Millan T., Zhang X., Ramsay L.D., Iwata A., Wang Y., Nelson W., Farmer A.D., Gaur P.M., Soderlund C., Penmetsa R.V., Xu C., Bharti A.K., He W., Winter P., Zhao S., Hane J.K., Carrasquilla-Garcia N., Condie J.A., Upadhyaya H.D., Luo M., Thudi M., Gowda C.L.L., Singh N.P., Lichtenzveig J., Gali K.K., Rubio J., Nadarajan N., Dolezel1 J., Bansal K.C., Xu X., Edwards D., Zhang G., Kahl G., Gil G., Singh K.B., Datta S.K., Jackson S.A., Wang J., Cook D.R. Draft genome sequence of chickpea (Cicer arietinum) provides a resource for trait improvement. Nat. Biotechnol. 2013, 31:240-246.
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Novel SSR markers from BAC-End sequences, DArT arrays and a comprehensive genetic map with 1291 marker loci for chickpea (Cicer arietinum L.)
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Thudi M., Bohra A., Nayak S.N., Varghese N., Shah T.M., Penmesta R.V., Thirunavukkarasu N., Gudipati S., Gaur P.M., Kulwal P.K., Upadhyaya H.D., Kavikishor P.B., Winter P., Kahl G., Town C.D., Kilian A., Cook D.R., Varshney R.K. Novel SSR markers from BAC-End sequences, DArT arrays and a comprehensive genetic map with 1291 marker loci for chickpea (Cicer arietinum L.). PLoS One 2011, 6:e27275.
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Genetic dissection of drought tolerance in chickpea (Cicer arietinum L.)
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Varshney R.K., Thudi M., Nayak S.N., Gaur P.M., Kashiwagi J., Krishnamurthy L., Jaganathan D., Koppolu J., Bohra A., Tripathi S., Rathore A., Jukanti A.K., Jayalakshmi V., Vemula A.K., Singh S.J., Yasin M., Sheshshayee M.S., Viswanatha K.P. Genetic dissection of drought tolerance in chickpea (Cicer arietinum L.). Theor. Appl. Genet. 2014, 127:445-462.
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Genotyping-by-sequencing based intra-specific genetic map refines a "QTL-hotspot region for drought tolerance in chickpea
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Jaganathan D., Thudi M., Kale S., Azam S., Roorkiwal M., Gaur P.M., Kavikishor P.B., Nguyen H., Sutton T., Varshney R.K. Genotyping-by-sequencing based intra-specific genetic map refines a "QTL-hotspot region for drought tolerance in chickpea. Mol. Genet. Genomics 2015, 290:559-571.
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High-resolution skim genotyping by sequencing reveals the distribution of crossovers and gene conversions in Cicer arietinum and Brassica napus
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Bayer P.E., Ruperao P., Mason A.S., Stiller J., Chan C.K., Hayashi S., Long Y., Meng J., Sutton T., Visendi P., Varshney R.K., Batley J., Edwards D. High-resolution skim genotyping by sequencing reveals the distribution of crossovers and gene conversions in Cicer arietinum and Brassica napus. Theor. Appl. Genet. 2015, 128(6):1039-1047.
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