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Volumn 7, Issue 5, 2012, Pages

Sequence-based genotyping for marker discovery and co-dominant scoring in germplasm and populations

Author keywords

[No Author keywords available]

Indexed keywords

ARABIDOPSIS; ARTICLE; CODOMINANCE; CONTROLLED STUDY; GENE MAPPING; GENETIC MARKER; GENETIC VARIABILITY; GENOME ANALYSIS; GENOTYPING TECHNIQUE; GERMPLASM; LETTUCE; LINKAGE ANALYSIS; NONHUMAN; PLANT GENOME; POPULATION STRUCTURE; SEQUENCE BASED GENOTYPING; SINGLE NUCLEOTIDE POLYMORPHISM;

EID: 84861472550     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0037565     Document Type: Article
Times cited : (117)

References (37)
  • 1
    • 51549104956 scopus 로고    scopus 로고
    • Molecular plant breeding as the foundation for 21st century crop improvement
    • Moose SP, Mumm RH, (2008) Molecular plant breeding as the foundation for 21st century crop improvement. Plant physiology 147: 969-977.
    • (2008) Plant Physiology , vol.147 , pp. 969-977
    • Moose, S.P.1    Mumm, R.H.2
  • 2
    • 65349159741 scopus 로고    scopus 로고
    • New technologies for ultra-high throughput genotyping in plants
    • Appleby N, Edwards D, Batley J, (2009) New technologies for ultra-high throughput genotyping in plants. Methods in molecular biology 513: 19-39.
    • (2009) Methods in Molecular Biology , vol.513 , pp. 19-39
    • Appleby, N.1    Edwards, D.2    Batley, J.3
  • 3
    • 76749109506 scopus 로고    scopus 로고
    • Breeding technologies to increase crop production in a changing world
    • Tester M, Langridge P, (2010) Breeding technologies to increase crop production in a changing world. Science 327: 818-822.
    • (2010) Science , vol.327 , pp. 818-822
    • Tester, M.1    Langridge, P.2
  • 4
    • 75949108635 scopus 로고    scopus 로고
    • Fine-scale comparative genetic and physical mapping supports map-based cloning strategies for the self-incompatibility loci of perennial ryegrass (Lolium perenne L.)
    • Shinozuka H, Cogan NO, Smith KF, Spangenberg GC, Forster JW, (2010) Fine-scale comparative genetic and physical mapping supports map-based cloning strategies for the self-incompatibility loci of perennial ryegrass (Lolium perenne L.). Plant molecular biology 72: 343-355.
    • (2010) Plant Molecular Biology , vol.72 , pp. 343-355
    • Shinozuka, H.1    Cogan, N.O.2    Smith, K.F.3    Spangenberg, G.C.4    Forster, J.W.5
  • 6
    • 78049332150 scopus 로고    scopus 로고
    • Genome-wide association studies of 14 agronomic traits in rice landraces
    • Huang X, Wei X, Sang T, Zhao Q, Feng Q, et al. (2010) Genome-wide association studies of 14 agronomic traits in rice landraces. Nature genetics 42: 961-967.
    • (2010) Nature Genetics , vol.42 , pp. 961-967
    • Huang, X.1    Wei, X.2    Sang, T.3    Zhao, Q.4    Feng, Q.5
  • 7
    • 79960655606 scopus 로고    scopus 로고
    • A consensus linkage map for molecular markers and quantitative trait loci associated with economically important traits in melon (Cucumis melo L.)
    • Diaz A, Fergany M, Formisano G, Ziarsolo P, Blanca J, et al. (2011) A consensus linkage map for molecular markers and quantitative trait loci associated with economically important traits in melon (Cucumis melo L.). BMC plant biology 11: 111.
    • (2011) BMC Plant Biology , vol.11 , pp. 111
    • Diaz, A.1    Fergany, M.2    Formisano, G.3    Ziarsolo, P.4    Blanca, J.5
  • 11
    • 70949092573 scopus 로고    scopus 로고
    • Laboratory methods for high-throughput genotyping
    • Edenberg HJ, Liu Y, (2009) Laboratory methods for high-throughput genotyping. Cold Spring Harbor protocols 2009: pdb top62.
    • (2009) Cold Spring Harbor Protocols , vol.2009 , pp. 62
    • Edenberg, H.J.1    Liu, Y.2
  • 13
    • 43149110423 scopus 로고    scopus 로고
    • Complexity reduction of polymorphic sequences (CRoPS): a novel approach for large-scale polymorphism discovery in complex genomes
    • van Orsouw NJ, Hogers RC, Janssen A, Yalcin F, Snoeijers S, et al. (2007) Complexity reduction of polymorphic sequences (CRoPS): a novel approach for large-scale polymorphism discovery in complex genomes. PloS one 2: e1172.
    • (2007) PloS One , vol.2
    • van Orsouw, N.J.1    Hogers, R.C.2    Janssen, A.3    Yalcin, F.4    Snoeijers, S.5
  • 14
    • 40149098690 scopus 로고    scopus 로고
    • SNP discovery and allele frequency estimation by deep sequencing of reduced representation libraries
    • Van Tassell CP, Smith TP, Matukumalli LK, Taylor JF, Schnabel RD, et al. (2008) SNP discovery and allele frequency estimation by deep sequencing of reduced representation libraries. Nature methods 5: 247-252.
    • (2008) Nature Methods , vol.5 , pp. 247-252
    • van Tassell, C.P.1    Smith, T.P.2    Matukumalli, L.K.3    Taylor, J.F.4    Schnabel, R.D.5
  • 16
    • 79953304894 scopus 로고    scopus 로고
    • Multiplexed shotgun genotyping for rapid and efficient genetic mapping
    • Andolfatto P, Davison D, Erezyilmaz D, Hu TT, Mast J, et al. (2011) Multiplexed shotgun genotyping for rapid and efficient genetic mapping. Genome research 21: 610-617.
    • (2011) Genome Research , vol.21 , pp. 610-617
    • Andolfatto, P.1    Davison, D.2    Erezyilmaz, D.3    Hu, T.T.4    Mast, J.5
  • 17
    • 79955783956 scopus 로고    scopus 로고
    • A robust, simple genotyping-by-sequencing (GBS) approach for high diversity species
    • Elshire RJ, Glaubitz JC, Sun Q, Poland JA, Kawamoto K, et al. (2011) A robust, simple genotyping-by-sequencing (GBS) approach for high diversity species. PloS one 6: e19379.
    • (2011) PloS One , vol.6
    • Elshire, R.J.1    Glaubitz, J.C.2    Sun, Q.3    Poland, J.A.4    Kawamoto, K.5
  • 18
    • 84857520461 scopus 로고    scopus 로고
    • Development of High-Density Genetic Maps for Barley and Wheat Using a Novel Two-Enzyme Genotyping-by-Sequencing Approach
    • Poland JA, Brown PJ, Sorrells ME, Jannink JL, (2012) Development of High-Density Genetic Maps for Barley and Wheat Using a Novel Two-Enzyme Genotyping-by-Sequencing Approach. PloS one 7: e32253.
    • (2012) PloS One , vol.7
    • Poland, J.A.1    Brown, P.J.2    Sorrells, M.E.3    Jannink, J.L.4
  • 20
    • 0027158760 scopus 로고
    • A rapid CTAB DNA isolation technique useful for RAPD fingerprinting and other PCR applications
    • Stewart CN Jr, Via LE, (1993) A rapid CTAB DNA isolation technique useful for RAPD fingerprinting and other PCR applications. BioTechniques 14: 748-750.
    • (1993) BioTechniques , vol.14 , pp. 748-750
    • Stewart Jr., C.N.1    Via, L.E.2
  • 22
    • 80052722558 scopus 로고    scopus 로고
    • SEED: efficient clustering of next-generation sequences
    • Bao E, Jiang T, Kaloshian I, Girke T, (2011) SEED: efficient clustering of next-generation sequences. Bioinformatics 27: 2502-2509.
    • (2011) Bioinformatics , vol.27 , pp. 2502-2509
    • Bao, E.1    Jiang, T.2    Kaloshian, I.3    Girke, T.4
  • 23
    • 67649884743 scopus 로고    scopus 로고
    • Fast and accurate short read alignment with Burrows-Wheeler transform
    • Li H, Durbin R, (2009) Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics 25: 1754-1760.
    • (2009) Bioinformatics , vol.25 , pp. 1754-1760
    • Li, H.1    Durbin, R.2
  • 25
    • 79955483667 scopus 로고    scopus 로고
    • A framework for variation discovery and genotyping using next-generation DNA sequencing data
    • DePristo MA, Banks E, Poplin R, Garimella KV, Maguire JR, et al. (2011) A framework for variation discovery and genotyping using next-generation DNA sequencing data. Nature genetics 43: 491-498.
    • (2011) Nature Genetics , vol.43 , pp. 491-498
    • DePristo, M.A.1    Banks, E.2    Poplin, R.3    Garimella, K.V.4    Maguire, J.R.5
  • 26
    • 84902006149 scopus 로고    scopus 로고
    • Carte Blanche: Software for high density linkage mapping; January 12-16, 2002
    • San Diego, CA, USA
    • Buntjer J, (2002) Carte Blanche: Software for high density linkage mapping; January 12-16, 2002. Plant, Animal & Microbe Genomes X Conference; San Diego, CA, USA.
    • (2002) Plant, Animal & Microbe Genomes X Conference
    • Buntjer, J.1
  • 27
    • 68349137618 scopus 로고    scopus 로고
    • Design of a high density SNP genotyping assay in the pig using SNPs identified and characterized by next generation sequencing technology
    • Ramos AM, Crooijmans RP, Affara NA, Amaral AJ, Archibald AL, et al. (2009) Design of a high density SNP genotyping assay in the pig using SNPs identified and characterized by next generation sequencing technology. PloS one 4: e6524.
    • (2009) PloS One , vol.4
    • Ramos, A.M.1    Crooijmans, R.P.2    Affara, N.A.3    Amaral, A.J.4    Archibald, A.L.5
  • 29
    • 0000353829 scopus 로고
    • Restriction Fragment Length Polymorphism Linkage Map of Arabidopsis thaliana
    • Nam HG, Giraudat J, Den Boer B, Moonan F, Loos W, et al. (1989) Restriction Fragment Length Polymorphism Linkage Map of Arabidopsis thaliana. The Plant cell 1: 699-705.
    • (1989) The Plant Cell , vol.1 , pp. 699-705
    • Nam, H.G.1    Giraudat, J.2    Den Boer, B.3    Moonan, F.4    Loos, W.5
  • 31
    • 79953306241 scopus 로고    scopus 로고
    • Sequence-based physical mapping of complex genomes by whole genome profiling
    • van Oeveren J, de Ruiter M, Jesse T, van der Poel H, Tang J, et al. (2011) Sequence-based physical mapping of complex genomes by whole genome profiling. Genome research 21: 618-625.
    • (2011) Genome Research , vol.21 , pp. 618-625
    • van Oeveren, J.1    de Ruiter, M.2    Jesse, T.3    van der Poel, H.4    Tang, J.5
  • 33
    • 7144259092 scopus 로고    scopus 로고
    • Development of an AFLP based linkage map of Ler, Col and Cvi Arabidopsis thaliana ecotypes and construction of a Ler/Cvi recombinant inbred line population
    • Alonso-Blanco C, Peeters AJ, Koornneef M, Lister C, Dean C, et al. (1998) Development of an AFLP based linkage map of Ler, Col and Cvi Arabidopsis thaliana ecotypes and construction of a Ler/Cvi recombinant inbred line population. The Plant journal: for cell and molecular biology 14: 259-271.
    • (1998) The Plant Journal: For Cell and Molecular Biology , vol.14 , pp. 259-271
    • Alonso-Blanco, C.1    Peeters, A.J.2    Koornneef, M.3    Lister, C.4    Dean, C.5
  • 35
    • 79958083178 scopus 로고    scopus 로고
    • Identification of SNP and SSR markers in eggplant using RAD tag sequencing
    • Barchi L, Lanteri S, Portis E, Acquadro A, Vale G, et al. (2011) Identification of SNP and SSR markers in eggplant using RAD tag sequencing. BMC genomics 12: 304.
    • (2011) BMC Genomics , vol.12 , pp. 304
    • Barchi, L.1    Lanteri, S.2    Portis, E.3    Acquadro, A.4    Vale, G.5
  • 36
    • 79955609628 scopus 로고    scopus 로고
    • Linkage mapping and comparative genomics using next-generation RAD sequencing of a non-model organism
    • Baxter SW, Davey JW, Johnston JS, Shelton AM, Heckel DG, et al. (2011) Linkage mapping and comparative genomics using next-generation RAD sequencing of a non-model organism. PloS one 6: e19315.
    • (2011) PloS One , vol.6
    • Baxter, S.W.1    Davey, J.W.2    Johnston, J.S.3    Shelton, A.M.4    Heckel, D.G.5
  • 37
    • 78650792488 scopus 로고    scopus 로고
    • Construction and application for QTL analysis of a Restriction Site Associated DNA (RAD) linkage map in barley
    • Chutimanitsakun Y, Nipper RW, Cuesta-Marcos A, Cistue L, Corey A, et al. (2011) Construction and application for QTL analysis of a Restriction Site Associated DNA (RAD) linkage map in barley. BMC genomics 12: 4.
    • (2011) BMC Genomics , vol.12 , pp. 4
    • Chutimanitsakun, Y.1    Nipper, R.W.2    Cuesta-Marcos, A.3    Cistue, L.4    Corey, A.5


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