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Volumn 128, Issue 12, 2015, Pages 2387-2401

Development and analysis of a 20K SNP array for potato (Solanum tuberosum): an insight into the breeding history

Author keywords

[No Author keywords available]

Indexed keywords

AGRONOMY; CHROMOSOMES; GENETIC ENGINEERING;

EID: 84947019054     PISSN: 00405752     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00122-015-2593-y     Document Type: Article
Times cited : (138)

References (37)
  • 3
    • 34548128406 scopus 로고    scopus 로고
    • SNP discovery via 454 transcriptome sequencing
    • COI: 1:CAS:528:DC%2BD2sXhtVKmurfL, PID: 17662031
    • Barbazuk WB, Emrich SJ, Chen HD, Li L, Schnable PS (2007) SNP discovery via 454 transcriptome sequencing. Plant J 51:910–918
    • (2007) Plant J , vol.51 , pp. 910-918
    • Barbazuk, W.B.1    Emrich, S.J.2    Chen, H.D.3    Li, L.4    Schnable, P.S.5
  • 4
    • 28244474931 scopus 로고    scopus 로고
    • Utilisation of the commonwealth potato collection in potato breeding
    • Bradshaw J, Ramsay G (2005) Utilisation of the commonwealth potato collection in potato breeding. Euphytica 146(1–2):9–19
    • (2005) Euphytica , vol.146 , Issue.1-2 , pp. 9-19
    • Bradshaw, J.1    Ramsay, G.2
  • 5
    • 64749112341 scopus 로고    scopus 로고
    • Targeted single nucleotide polymorphism (SNP) discovery in a highly polyploid plant species using 454 sequencing
    • COI: 1:CAS:528:DC%2BD1MXlvFOitLg%3D, PID: 19386042
    • Bundock PC, Eliott FG, Ablett G, Benson AD, Casu RE, Aitken KS, Henry RJ (2009) Targeted single nucleotide polymorphism (SNP) discovery in a highly polyploid plant species using 454 sequencing. Plant Biotechnol J 7:347–354
    • (2009) Plant Biotechnol J , vol.7 , pp. 347-354
    • Bundock, P.C.1    Eliott, F.G.2    Ablett, G.3    Benson, A.D.4    Casu, R.E.5    Aitken, K.S.6    Henry, R.J.7
  • 7
    • 79957883348 scopus 로고    scopus 로고
    • Phenotypic analyses of multi-environment data for two diverse tetraploid potato collections: comparing an academic panel with an industrial panel
    • D’hoop B, Paulo MJ, Visser RGF, van Eck HJ, van Eeuwijk FA (2011) Phenotypic analyses of multi-environment data for two diverse tetraploid potato collections: comparing an academic panel with an industrial panel. Potato Res 54:157–181
    • (2011) Potato Res , vol.54 , pp. 157-181
    • D’hoop, B.1    Paulo, M.J.2    Visser, R.G.F.3    van Eck, H.J.4    van Eeuwijk, F.A.5
  • 8
    • 84907878465 scopus 로고    scopus 로고
    • Identification of agronomically important QTL in tetraploid potato cultivars using a marker–trait association analysis
    • PID: 24408376
    • D’hoop B, Keizer PC, Paulo MJ, Visser RGF, van Eeuwijk F, van Eck H (2014) Identification of agronomically important QTL in tetraploid potato cultivars using a marker–trait association analysis. Theor Appl Genet 127(3):731–748
    • (2014) Theor Appl Genet , vol.127 , Issue.3 , pp. 731-748
    • D’hoop, B.1    Keizer, P.C.2    Paulo, M.J.3    Visser, R.G.F.4    van Eeuwijk, F.5    van Eck, H.6
  • 9
    • 0030484057 scopus 로고    scopus 로고
    • Assessment of potato breeding progress in the USA over the last century
    • Douches D, Maas D, Jastrzebski K, Chase R (1996) Assessment of potato breeding progress in the USA over the last century. Crop Sci 36:1544–1552
    • (1996) Crop Sci , vol.36 , pp. 1544-1552
    • Douches, D.1    Maas, D.2    Jastrzebski, K.3    Chase, R.4
  • 11
    • 84877979569 scopus 로고    scopus 로고
    • Linkage analysis and QTL mapping using SNP dosage data in a tetraploid potato mapping population
    • PID: 23704960
    • Hackett CA, McLean K, Bryan GJ (2013) Linkage analysis and QTL mapping using SNP dosage data in a tetraploid potato mapping population. PLoS One 8:e63939
    • (2013) PLoS One , vol.8 , pp. e63939
    • Hackett, C.A.1    McLean, K.2    Bryan, G.J.3
  • 13
    • 84863681911 scopus 로고    scopus 로고
    • Single nucleotide polymorphism discovery in cultivated tomato via sequencing by synthesis
    • COI: 1:CAS:528:DC%2BC38XmvVKqt7o%3D
    • Hamilton JP, Sim S-C, Stoffel K, Van Deynze A, Buell CR, Francis DM (2012) Single nucleotide polymorphism discovery in cultivated tomato via sequencing by synthesis. Plant Genome 5:17–29
    • (2012) Plant Genome , vol.5 , pp. 17-29
    • Hamilton, J.P.1    Sim, S.-C.2    Stoffel, K.3    Van Deynze, A.4    Buell, C.R.5    Francis, D.M.6
  • 14
    • 0027139513 scopus 로고
    • The early history of the potato in Europe
    • Hawkes JG, Francisco-Ortega J (1993) The early history of the potato in Europe. Euphytica 70:1–7
    • (1993) Euphytica , vol.70 , pp. 1-7
    • Hawkes, J.G.1    Francisco-Ortega, J.2
  • 18
    • 84902270076 scopus 로고    scopus 로고
    • Phenotypic stability and genome-wide association study of late blight resistance in potato genotypes adapted to the tropical highlands
    • PID: 24423400
    • Lindqvist-Kreuze H, Gastelo M, Perez W, Forbes GA, de Koeyer D, Bonierbale M (2014) Phenotypic stability and genome-wide association study of late blight resistance in potato genotypes adapted to the tropical highlands. Phytopathology 104:624–633
    • (2014) Phytopathology , vol.104 , pp. 624-633
    • Lindqvist-Kreuze, H.1    Gastelo, M.2    Perez, W.3    Forbes, G.A.4    de Koeyer, D.5    Bonierbale, M.6
  • 19
    • 84879000592 scopus 로고    scopus 로고
    • Validation of molecular markers for pathogen resistance in potato
    • COI: 1:CAS:528:DC%2BC3sXpt1equrc%3D
    • Lopez-Pardo R, Barandalla L, Ritter E, Ruiz de Galarreta JI (2013) Validation of molecular markers for pathogen resistance in potato. Plant Breed 132:246–251
    • (2013) Plant Breed , vol.132 , pp. 246-251
    • Lopez-Pardo, R.1    Barandalla, L.2    Ritter, E.3    Ruiz de Galarreta, J.I.4
  • 20
    • 0031925754 scopus 로고    scopus 로고
    • Breeding progress for potato chip quality in North American cultivars
    • Love SL, Pavek JJ, Thompson-Johns A, Bohl W (1998) Breeding progress for potato chip quality in North American cultivars. Am J Potato Res 75:27–36
    • (1998) Am J Potato Res , vol.75 , pp. 27-36
    • Love, S.L.1    Pavek, J.J.2    Thompson-Johns, A.3    Bohl, W.4
  • 21
    • 84907161139 scopus 로고    scopus 로고
    • Allelic variation in genes contributing to glycoalkaloid biosynthesis in a diploid interspecific population of potato
    • COI: 1:CAS:528:DC%2BC3sXhsleltrbL, PID: 24190104
    • Manrique-Carpintero N, Tokuhisa J, Ginzberg I, Veilleux R (2014) Allelic variation in genes contributing to glycoalkaloid biosynthesis in a diploid interspecific population of potato. Theor Appl Genet 127(2):391–405
    • (2014) Theor Appl Genet , vol.127 , Issue.2 , pp. 391-405
    • Manrique-Carpintero, N.1    Tokuhisa, J.2    Ginzberg, I.3    Veilleux, R.4
  • 22
    • 77955293622 scopus 로고    scopus 로고
    • Effects of ascertainment bias and marker number on estimations of barley diversity from high-throughput SNP genotype data
    • COI: 1:STN:280:DC%2BC3c3osFSmtQ%3D%3D, PID: 20157694
    • Moragues M, Comadran J, Waugh R, Milne I, Flavell A, Russell JR (2010) Effects of ascertainment bias and marker number on estimations of barley diversity from high-throughput SNP genotype data. Theor Appl Genet 120:1525–1534
    • (2010) Theor Appl Genet , vol.120 , pp. 1525-1534
    • Moragues, M.1    Comadran, J.2    Waugh, R.3    Milne, I.4    Flavell, A.5    Russell, J.R.6
  • 23
    • 79960422847 scopus 로고    scopus 로고
    • Genome sequence and analysis of the tuber crop potato
    • PGSC—Potato Genome Sequencing Consortium (2011) Genome sequence and analysis of the tuber crop potato. Nature 475(7355):189–195
    • (2011) Nature , vol.475 , Issue.7355 , pp. 189-195
    • PGSC—Potato Genome Sequencing Consortium1
  • 24
    • 84919773613 scopus 로고    scopus 로고
    • Construction of a dense SNP map of a highly heterozygous diploid potato population and QTL analysis of tuber shape and eye depth
    • PID: 25159608
    • Prashar A, Hornyik C, Young V, McLean K, Sharma S, Dale MF, Bryan G (2014) Construction of a dense SNP map of a highly heterozygous diploid potato population and QTL analysis of tuber shape and eye depth. Theor Appl Genet 127:2159–2171
    • (2014) Theor Appl Genet , vol.127 , pp. 2159-2171
    • Prashar, A.1    Hornyik, C.2    Young, V.3    McLean, K.4    Sharma, S.5    Dale, M.F.6    Bryan, G.7
  • 30
    • 0005920811 scopus 로고
    • Reflections on the origin of new physiologic races in Phytophthora infestans and the breeding for resistance in potatoes
    • Toxopeus HJ (1956) Reflections on the origin of new physiologic races in Phytophthora infestans and the breeding for resistance in potatoes. Euphytica 5:221–237
    • (1956) Euphytica , vol.5 , pp. 221-237
    • Toxopeus, H.J.1
  • 31
    • 64749090107 scopus 로고    scopus 로고
    • Single nucleotide polymorphism (SNP) discovery in the polyploid Brassica napus using Solexa transcriptome sequencing
    • COI: 1:CAS:528:DC%2BD1MXlvFOitLs%3D, PID: 19207216
    • Trick M, Long Y, Meng J, Bancroft I (2009) Single nucleotide polymorphism (SNP) discovery in the polyploid Brassica napus using Solexa transcriptome sequencing. Plant Biotechnol J 7:334–346
    • (2009) Plant Biotechnol J , vol.7 , pp. 334-346
    • Trick, M.1    Long, Y.2    Meng, J.3    Bancroft, I.4
  • 32
    • 84877268772 scopus 로고    scopus 로고
    • A next-generation sequencing method for genotyping-by-sequencing of highly heterozygous autotetraploid potato
    • COI: 1:CAS:528:DC%2BC3sXnvVyisL0%3D, PID: 23667470
    • Uitdewilligen JG, Wolters A-MA, Bjorn B, Borm TJ, Visser RG, van Eck HJ (2013) A next-generation sequencing method for genotyping-by-sequencing of highly heterozygous autotetraploid potato. PLoS One 8:e62355
    • (2013) PLoS One , vol.8 , pp. e62355
    • Uitdewilligen, J.G.1    Wolters, A.-M.A.2    Bjorn, B.3    Borm, T.J.4    Visser, R.G.5    van Eck, H.J.6
  • 34
    • 77950021720 scopus 로고    scopus 로고
    • Genetic diversity trends in twentieth century crop cultivars: a meta analysis
    • PID: 20054521
    • van de Wouw M, van Hintum T, Kik C, van Treuren R, Visser B (2010) Genetic diversity trends in twentieth century crop cultivars: a meta analysis. Theor Appl Genet 120:1241–1252
    • (2010) Theor Appl Genet , vol.120 , pp. 1241-1252
    • van de Wouw, M.1    van Hintum, T.2    Kik, C.3    van Treuren, R.4    Visser, B.5
  • 35
    • 79956025063 scopus 로고    scopus 로고
    • Genotype calling in tetraploid species from bi-allelic marker data using mixture models
    • Voorrips R, Gort G, Vosman B (2011) Genotype calling in tetraploid species from bi-allelic marker data using mixture models. BMC Bioinform 12:172
    • (2011) BMC Bioinform , vol.12 , pp. 172
    • Voorrips, R.1    Gort, G.2    Vosman, B.3
  • 36
    • 84904727598 scopus 로고    scopus 로고
    • Characterization of polyploid wheat genomic diversity using a high density 90,000 single nucleotide polymorphism array
    • COI: 1:CAS:528:DC%2BC2cXht1Wmsr%2FI, PID: 24646323
    • Wang S, Wong D, Forrest K, Allen A, Chao S, Huang BE, Maccaferri M, Salvi S, Milner SG, Cattivelli L (2014) Characterization of polyploid wheat genomic diversity using a high density 90,000 single nucleotide polymorphism array. Plant Biotechnol J 12(6):787–796
    • (2014) Plant Biotechnol J , vol.12 , Issue.6 , pp. 787-796
    • Wang, S.1    Wong, D.2    Forrest, K.3    Allen, A.4    Chao, S.5    Huang, B.E.6    Maccaferri, M.7    Salvi, S.8    Milner, S.G.9    Cattivelli, L.10
  • 37
    • 77951217695 scopus 로고    scopus 로고
    • Fine definition of the pedigree haplotypes of closely related rice cultivars by means of genome-wide discovery of single-nucleotide polymorphisms
    • Yamamoto T, Nagasaki H, Yonemaru J-i, Ebana K, Nakajima M, Shibaya T, Yano M (2010) Fine definition of the pedigree haplotypes of closely related rice cultivars by means of genome-wide discovery of single-nucleotide polymorphisms. BMC Genom 11(1):267
    • (2010) BMC Genom , vol.11 , Issue.1 , pp. 267
    • Yamamoto, T.1    Nagasaki, H.2    Yonemaru, J.-I.3    Ebana, K.4    Nakajima, M.5    Shibaya, T.6    Yano, M.7


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