-
1
-
-
84883252302
-
A platform for soybean molecular breeding: The utilization of core collections for food security
-
Qiu, L.J. et al. A platform for soybean molecular breeding: the utilization of core collections for food security. Plant Mol. Biol. 83, 41-50 (2013).
-
(2013)
Plant Mol. Biol.
, vol.83
, pp. 41-50
-
-
Qiu, L.J.1
-
2
-
-
74549221016
-
Genome sequence of the palaeopolyploid soybean
-
Schmutz, J. et al. Genome sequence of the palaeopolyploid soybean. Nature 463, 178-183 (2010).
-
(2010)
Nature
, vol.463
, pp. 178-183
-
-
Schmutz, J.1
-
3
-
-
78649479141
-
Resequencing of 31 wild and cultivated soybean genomes identifies patterns of genetic diversity and selection
-
Lam, H.M. et al. Resequencing of 31 wild and cultivated soybean genomes identifies patterns of genetic diversity and selection. Nat. Genet. 42, 1053-1059 (2010).
-
(2010)
Nat. Genet.
, vol.42
, pp. 1053-1059
-
-
Lam, H.M.1
-
4
-
-
78650668282
-
Whole-genome sequencing and intensive analysis of the undomesticated soybean (Glycine soja Sieb. and Zucc.) genome
-
Kim, M.Y. et al. Whole-genome sequencing and intensive analysis of the undomesticated soybean (Glycine soja Sieb. and Zucc.) genome. Proc. Natl. Acad. Sci. USA 107, 22032-22037 (2010).
-
(2010)
Proc. Natl. Acad. Sci. USA
, vol.107
, pp. 22032-22037
-
-
Kim, M.Y.1
-
5
-
-
84883121798
-
Molecular footprints of domestication and improvement in soybean revealed by whole genome re-sequencing
-
Li, Y.H. et al. Molecular footprints of domestication and improvement in soybean revealed by whole genome re-sequencing. BMC Genomics 14, 579 (2013).
-
(2013)
BMC Genomics
, vol.14
, pp. 579
-
-
Li, Y.H.1
-
6
-
-
84862993359
-
Comparative population genomics of maize domestication and improvement
-
Hufford, M.B. et al. Comparative population genomics of maize domestication and improvement. Nat. Genet. 44, 808-811 (2012).
-
(2012)
Nat. Genet.
, vol.44
, pp. 808-811
-
-
Hufford, M.B.1
-
7
-
-
74049090046
-
Building the sequence map of the human pan-genome
-
Li, R. et al. Building the sequence map of the human pan-genome. Nat. Biotechnol. 28, 57-63 (2010).
-
(2010)
Nat. Biotechnol.
, vol.28
, pp. 57-63
-
-
Li, R.1
-
8
-
-
77956271697
-
Genetic diversity in domesticated soybean (Glycine max) and its wild progenitor (Glycine soja) for simple sequence repeat and single-nucleotide polymorphism loci
-
Li, Y.H. et al. Genetic diversity in domesticated soybean (Glycine max) and its wild progenitor (Glycine soja) for simple sequence repeat and single-nucleotide polymorphism loci. New Phytol. 188, 242-253 (2010).
-
(2010)
New Phytol.
, vol.188
, pp. 242-253
-
-
Li, Y.H.1
-
9
-
-
25444524604
-
Genome analysis of multiple pathogenic isolates of Streptococcus agalactiae: Implications for the microbial 'pan-genome'
-
Tettelin, H. et al. Genome analysis of multiple pathogenic isolates of Streptococcus agalactiae: implications for the microbial 'pan-genome'. Proc. Natl. Acad. Sci. USA 102, 13950-13955 (2005).
-
(2005)
Proc. Natl. Acad. Sci. USA
, vol.102
, pp. 13950-13955
-
-
Tettelin, H.1
-
10
-
-
0000878758
-
Cytological studies on the wild and cultivated Manchurian soybeans
-
Fukuda, Y. Cytological studies on the wild and cultivated Manchurian soybeans. Jap. J. Bot. 6, 489-506 (1933).
-
(1933)
Jap. J. Bot.
, vol.6
, pp. 489-506
-
-
Fukuda, Y.1
-
11
-
-
75649124547
-
De novo assembly of human genomes with massively parallel short read sequencing
-
Li, R. et al. De novo assembly of human genomes with massively parallel short read sequencing. Genome Res. 20, 265-272 (2010).
-
(2010)
Genome Res.
, vol.20
, pp. 265-272
-
-
Li, R.1
-
12
-
-
16644366267
-
Plant-specific microtubule-associated protein SPIRAL2 is required for anisotropic growth in Arabidopsis
-
Shoji, T. et al. Plant-specific microtubule-associated protein SPIRAL2 is required for anisotropic growth in Arabidopsis. Plant Physiol. 136, 3933-3944 (2004).
-
(2004)
Plant Physiol.
, vol.136
, pp. 3933-3944
-
-
Shoji, T.1
-
13
-
-
79955467963
-
Glycerol-3-phosphate is a critical mobile inducer of systemic immunity in plants
-
Chanda, B. et al. Glycerol-3-phosphate is a critical mobile inducer of systemic immunity in plants. Nat. Genet. 43, 421-427 (2011).
-
(2011)
Nat. Genet.
, vol.43
, pp. 421-427
-
-
Chanda, B.1
-
14
-
-
0033823573
-
A new subfamily of sucrose transporters, SUT4, with low affinity/high capacity localized in enucleate sieve elements of plants
-
Weise, A. et al. A new subfamily of sucrose transporters, SUT4, with low affinity/high capacity localized in enucleate sieve elements of plants. Plant Cell 12, 1345-1355 (2000).
-
(2000)
Plant Cell
, vol.12
, pp. 1345-1355
-
-
Weise, A.1
-
15
-
-
33847365785
-
Structural and functional characterization of ferredoxin-ADP+-xidoreductase using knock-out mutants of Arabidopsis
-
Lintala, M. et al. Structural and functional characterization of ferredoxin-ADP+-xidoreductase using knock-out mutants of Arabidopsis. Plant J. 49, 1041-1052 (2007).
-
(2007)
Plant J.
, vol.49
, pp. 1041-1052
-
-
Lintala, M.1
-
16
-
-
78549273825
-
Pervasive gene content variation and copy number variation in maize and its undomesticated progenitor
-
Swanson-Wagner, R.A. et al. Pervasive gene content variation and copy number variation in maize and its undomesticated progenitor. Genome Res. 20, 1689-1699 (2010).
-
(2010)
Genome Res.
, vol.20
, pp. 1689-1699
-
-
Swanson-Wagner, R.A.1
-
17
-
-
84862981255
-
Genome-wide genetic changes during modern breeding of maize
-
Jiao, Y. et al. Genome-wide genetic changes during modern breeding of maize. Nat. Genet. 44, 812-815 (2012).
-
(2012)
Nat. Genet.
, vol.44
, pp. 812-815
-
-
Jiao, Y.1
-
18
-
-
79957676298
-
Contemporaneous and recent radiations of the world's major succulent plant lineages
-
Arakaki, M. et al. Contemporaneous and recent radiations of the world's major succulent plant lineages. Proc. Natl. Acad. Sci. USA 108, 8379-8384 (2011).
-
(2011)
Proc. Natl. Acad. Sci. USA
, vol.108
, pp. 8379-8384
-
-
Arakaki, M.1
-
19
-
-
84862956715
-
Draft genome sequence of pigeonpea (Cajanus cajan), an orphan legume crop of resource-poor farmers
-
Varshney, R.K. et al. Draft genome sequence of pigeonpea (Cajanus cajan), an orphan legume crop of resource-poor farmers. Nat. Biotechnol. 30, 83-89 (2012).
-
(2012)
Nat. Biotechnol.
, vol.30
, pp. 83-89
-
-
Varshney, R.K.1
-
20
-
-
80455145116
-
Archaeological soybean (Glycine max) in East Asia: Does size matter?
-
Lee, G.A., Crawford, G.W., Liu, L., Sasaki, Y. & Chen, X. Archaeological soybean (Glycine max) in East Asia: does size matter? PLoS ONE 6, e26720 (2011).
-
(2011)
PLoS ONE
, vol.6
-
-
Lee, G.A.1
Crawford, G.W.2
Liu, L.3
Sasaki, Y.4
Chen, X.5
-
21
-
-
77958580152
-
Structure and dynamics of the pan-genome of Streptococcus pneumoniae and closely related species
-
Donati, C. et al. Structure and dynamics of the pan-genome of Streptococcus pneumoniae and closely related species. Genome Biol. 11, R107 (2010).
-
(2010)
Genome Biol.
, vol.11
, pp. R107
-
-
Donati, C.1
-
22
-
-
77958497573
-
Relaxed purifying selection and possibly high rate of adaptation in primate lineage-specific genes
-
Cai, J.J. & Petrov, D.A. Relaxed purifying selection and possibly high rate of adaptation in primate lineage-specific genes. Genome Biol. Evol. 2, 393-409 (2010).
-
(2010)
Genome Biol. Evol.
, vol.2
, pp. 393-409
-
-
Cai, J.J.1
Petrov, D.A.2
-
23
-
-
0142124263
-
Gene loss, protein sequence divergence, gene dispensability, expression level, and interactivity are correlated in eukaryotic evolution
-
Krylov, D.M., Wolf, Y.I., Rogozin, I.B. & Koonin, E.V. Gene loss, protein sequence divergence, gene dispensability, expression level, and interactivity are correlated in eukaryotic evolution. Genome Res. 13, 2229-2235 (2003).
-
(2003)
Genome Res.
, vol.13
, pp. 2229-2235
-
-
Krylov, D.M.1
Wolf, Y.I.2
Rogozin, I.B.3
Koonin, E.V.4
-
24
-
-
57749105200
-
Differential accumulation of retroelements and diversification of NB-LRR disease resistance genes in duplicated regions following polyploidy in the ancestor of soybean
-
Innes, R.W. et al. Differential accumulation of retroelements and diversification of NB-LRR disease resistance genes in duplicated regions following polyploidy in the ancestor of soybean. Plant Physiol. 148, 1740-1759 (2008).
-
(2008)
Plant Physiol.
, vol.148
, pp. 1740-1759
-
-
Innes, R.W.1
-
25
-
-
84872354931
-
The HC-Pro and P3 cistrons of an avirulent soybean mosaic virus are recognized by different resistance genes at the complex Rsv1 locus
-
Wen, R.H., Khatabi, B., Ashfield, T., Maroof, M.S. & Hajimorad, M. The HC-Pro and P3 cistrons of an avirulent soybean mosaic virus are recognized by different resistance genes at the complex Rsv1 locus. Mol. Plant Microbe Interact. 26, 203-215 (2013).
-
(2013)
Mol. Plant Microbe Interact.
, vol.26
, pp. 203-215
-
-
Wen, R.H.1
Khatabi, B.2
Ashfield, T.3
Maroof, M.S.4
Hajimorad, M.5
-
26
-
-
78649631946
-
SNP assay to detect the 'Hyuuga'red-brown lesion resistance gene for Asian soybean rust
-
Monteros, M.J., Ha, B.-K., Phillips, D.V. & Boerma, H.R. SNP assay to detect the 'Hyuuga'red-brown lesion resistance gene for Asian soybean rust. Theor. Appl. Genet. 121, 1023-1032 (2010).
-
(2010)
Theor. Appl. Genet.
, vol.121
, pp. 1023-1032
-
-
Monteros, M.J.1
Ha, B.-K.2
Phillips, D.V.3
Boerma, H.R.4
-
27
-
-
84878348365
-
Genetic characterization and fine mapping of the novel Phytophthora resistance gene in a Chinese soybean cultivar
-
Zhang, J. et al. Genetic characterization and fine mapping of the novel Phytophthora resistance gene in a Chinese soybean cultivar. Theor. Appl. Genet. 126, 1555-1561 (2013).
-
(2013)
Theor. Appl. Genet.
, vol.126
, pp. 1555-1561
-
-
Zhang, J.1
-
28
-
-
78449297215
-
R gene-controlled host specificity in the legume-rhizobia symbiosis
-
Yang, S., Tang, F., Gao, M., Krishnan, H.B. & Zhu, H. R gene-controlled host specificity in the legume-rhizobia symbiosis. Proc. Natl. Acad. Sci. USA 107, 18735-18740 (2010).
-
(2010)
Proc. Natl. Acad. Sci. USA
, vol.107
, pp. 18735-18740
-
-
Yang, S.1
Tang, F.2
Gao, M.3
Krishnan, H.B.4
Zhu, H.5
-
29
-
-
84864692624
-
Structural variants in the soybean genome localize to clusters of biotic stress-response genes
-
McHale, L.K. et al. Structural variants in the soybean genome localize to clusters of biotic stress-response genes. Plant Physiol. 159, 1295-1308 (2012).
-
(2012)
Plant Physiol.
, vol.159
, pp. 1295-1308
-
-
McHale, L.K.1
-
30
-
-
58149333885
-
Genetic redundancy in soybean photoresponses associated with duplication of the phytochrome A gene
-
Liu, B. et al. Genetic redundancy in soybean photoresponses associated with duplication of the phytochrome A gene. Genetics 180, 995-1007 (2008).
-
(2008)
Genetics
, vol.180
, pp. 995-1007
-
-
Liu, B.1
-
31
-
-
70350173304
-
Map-based cloning of the gene associated with the soybean maturity locus E3
-
Watanabe, S. et al. Map-based cloning of the gene associated with the soybean maturity locus E3. Genetics 182, 1251-1262 (2009).
-
(2009)
Genetics
, vol.182
, pp. 1251-1262
-
-
Watanabe, S.1
-
32
-
-
78249285587
-
Two coordinately regulated homologs of FLOWERING LOCUS T are involved in the control of photoperiodic flowering in soybean
-
Kong, F. et al. Two coordinately regulated homologs of FLOWERING LOCUS T are involved in the control of photoperiodic flowering in soybean. Plant Physiol. 154, 1220-1231 (2010).
-
(2010)
Plant Physiol.
, vol.154
, pp. 1220-1231
-
-
Kong, F.1
-
33
-
-
44949165596
-
Analysis of quantitative trait loci underlying the period of reproductive growth stages in soybean (Glycine max [L.] Merr.)
-
Xin, D.W. et al. Analysis of quantitative trait loci underlying the period of reproductive growth stages in soybean (Glycine max [L.] Merr.). Euphytica 162, 155-165 (2008).
-
(2008)
Euphytica
, vol.162
, pp. 155-165
-
-
Xin, D.W.1
-
34
-
-
84926031098
-
A study on fat content and fatty acid composition of wild soybean (G. Soja) in China
-
Xu, B. et al. A study on fat content and fatty acid composition of wild soybean (G. soja) in China. Jinlin Agric. Sci. 2, 1-6 (1993).
-
(1993)
Jinlin Agric. Sci.
, vol.2
, pp. 1-6
-
-
Xu, B.1
-
35
-
-
78650487543
-
Acyl-lipid metabolism
-
Li-Beisson, Y. et al. Acyl-lipid metabolism. The Arabidopsis Book 11, e0161 (2013).
-
(2013)
The Arabidopsis Book
, vol.11
, pp. e0161
-
-
Li-Beisson, Y.1
-
36
-
-
70350234774
-
Fatty acid-derived signals in plant defense
-
Kachroo, A. & Kachroo, P. Fatty acid-derived signals in plant defense. Annu. Rev. Phytopathol. 47, 153-176 (2009).
-
(2009)
Annu. Rev. Phytopathol.
, vol.47
, pp. 153-176
-
-
Kachroo, A.1
Kachroo, P.2
-
37
-
-
27944511234
-
Arabidopsis SENESCENCE-ASSOCIATED GENE101 stabilizes and signals within an ENHANCED DISEASE SUSCEPTIBILITY1 complex in plant innate immunity
-
Feys, B.J. et al. Arabidopsis SENESCENCE-ASSOCIATED GENE101 stabilizes and signals within an ENHANCED DISEASE SUSCEPTIBILITY1 complex in plant innate immunity. Plant Cell 17, 2601-2613 (2005).
-
(2005)
Plant Cell
, vol.17
, pp. 2601-2613
-
-
Feys, B.J.1
-
38
-
-
79955687733
-
Soybean oil content QTL mapping and integrating with meta-analysis method for mining genes
-
Qi, Z.M. et al. Soybean oil content QTL mapping and integrating with meta-analysis method for mining genes. Euphytica 179, 499-514 (2011).
-
(2011)
Euphytica
, vol.179
, pp. 499-514
-
-
Qi, Z.M.1
-
39
-
-
79958055201
-
ABI4 activates DGAT1 expression in Arabidopsis seedlings during nitrogen deficiency
-
Yang, Y., Yu, X., Song, L. & An, C. ABI4 activates DGAT1 expression in Arabidopsis seedlings during nitrogen deficiency. Plant Physiol. 156, 873-883 (2011).
-
(2011)
Plant Physiol.
, vol.156
, pp. 873-883
-
-
Yang, Y.1
Yu, X.2
Song, L.3
An, C.4
-
40
-
-
84881613734
-
Using the candidate gene approach for detecting genes underlying seed oil concentration and yield in soybean
-
Eskandari, M., Cober, E.R. & Rajcan, I. Using the candidate gene approach for detecting genes underlying seed oil concentration and yield in soybean. Theor. Appl. Genet. 126, 1839-1850 (2013).
-
(2013)
Theor. Appl. Genet.
, vol.126
, pp. 1839-1850
-
-
Eskandari, M.1
Cober, E.R.2
Rajcan, I.3
-
41
-
-
1542321063
-
Identification of putative QTL that underlie yield in interspecific soybean backcross populations
-
Wang, D., Graef, G., Procopiuk, A. & Diers, B. Identification of putative QTL that underlie yield in interspecific soybean backcross populations. Theor. Appl. Genet. 108, 458-467 (2004).
-
(2004)
Theor. Appl. Genet.
, vol.108
, pp. 458-467
-
-
Wang, D.1
Graef, G.2
Procopiuk, A.3
Diers, B.4
-
42
-
-
23044455690
-
Cytokinin oxidase regulates rice grain production
-
Ashikari, M. et al. Cytokinin oxidase regulates rice grain production. Science 309, 741-745 (2005).
-
(2005)
Science
, vol.309
, pp. 741-745
-
-
Ashikari, M.1
-
43
-
-
79959832855
-
Genetic control of plant organ growth
-
Johnson, K. & Lenhard, M. Genetic control of plant organ growth. New Phytol. 191, 319-333 (2011).
-
(2011)
New Phytol.
, vol.191
, pp. 319-333
-
-
Johnson, K.1
Lenhard, M.2
-
44
-
-
84880840905
-
Why assembling plant genome sequences is so challenging
-
Claros, M.G. et al. Why assembling plant genome sequences is so challenging. Biology 1, 439-459 (2012).
-
(2012)
Biology
, vol.1
, pp. 439-459
-
-
Claros, M.G.1
-
45
-
-
27444438599
-
The microbial pan-genome
-
Medini, D., Donati, C., Tettelin, H., Masignani, V. & Rappuoli, R. The microbial pan-genome. Curr. Opin. Genet. Dev. 15, 589-594 (2005).
-
(2005)
Curr. Opin. Genet. Dev.
, vol.15
, pp. 589-594
-
-
Medini, D.1
Donati, C.2
Tettelin, H.3
Masignani, V.4
Rappuoli, R.5
-
46
-
-
84880511242
-
Pan genome of the phytoplankton Emiliania underpins its global distribution
-
Read, B.A. et al. Pan genome of the phytoplankton Emiliania underpins its global distribution. Nature 499, 209-213 (2013).
-
(2013)
Nature
, vol.499
, pp. 209-213
-
-
Read, B.A.1
-
47
-
-
84896808010
-
Insights into the maize pan-genome and pan-transcriptome
-
Hirsch, C.N. et al. Insights into the maize pan-genome and pan-transcriptome. Plant Cell 26, 121-135 (2014).
-
(2014)
Plant Cell
, vol.26
, pp. 121-135
-
-
Hirsch, C.N.1
-
48
-
-
33750964714
-
Impacts of genetic bottlenecks on soybean genome diversity
-
Hyten, D.L. et al. Impacts of genetic bottlenecks on soybean genome diversity. Proc. Natl. Acad. Sci. USA 103, 16666-16671 (2006).
-
(2006)
Proc. Natl. Acad. Sci. USA
, vol.103
, pp. 16666-16671
-
-
Hyten, D.L.1
-
49
-
-
33845618112
-
The molecular genetics of crop domestication
-
Doebley, J.F., Gaut, B.S. & Smith, B.D. The molecular genetics of crop domestication. Cell 127, 1309-1321 (2006).
-
(2006)
Cell
, vol.127
, pp. 1309-1321
-
-
Doebley, J.F.1
Gaut, B.S.2
Smith, B.D.3
-
50
-
-
0034708758
-
A whole-genome assembly of Drosophila
-
Myers, E.W. et al. A whole-genome assembly of Drosophila. Science 287, 2196-2204 (2000).
-
(2000)
Science
, vol.287
, pp. 2196-2204
-
-
Myers, E.W.1
-
52
-
-
43149086380
-
ALLPATHS: De novo assembly of whole-genome shotgun microreads
-
Butler, J. et al. ALLPATHS: de novo assembly of whole-genome shotgun microreads. Genome Res. 18, 810-820 (2008).
-
(2008)
Genome Res.
, vol.18
, pp. 810-820
-
-
Butler, J.1
-
53
-
-
2942538300
-
Versatile and open software for comparing large genomes
-
Kurtz, S. et al. Versatile and open software for comparing large genomes. Genome Biol. 5, R12 (2004).
-
(2004)
Genome Biol.
, vol.5
, pp. R12
-
-
Kurtz, S.1
-
54
-
-
67649884743
-
Fast and accurate short read alignment with Burrows-Wheeler transform
-
Li, H. & Durbin, R. Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics 25, 1754-1760 (2009).
-
(2009)
Bioinformatics
, vol.25
, pp. 1754-1760
-
-
Li, H.1
Durbin, R.2
-
55
-
-
68549104404
-
The sequence alignment/map format and SAMtools
-
Li, H. et al. The sequence alignment/map format and SAMtools. Bioinformatics 25, 2078-2079 (2009).
-
(2009)
Bioinformatics
, vol.25
, pp. 2078-2079
-
-
Li, H.1
-
56
-
-
2942527473
-
Gene prediction with a hidden Markov model and a new intron submodel
-
Stanke, M. & Waack, S. Gene prediction with a hidden Markov model and a new intron submodel. Bioinformatics 19, ii215-ii225 (2003).
-
(2003)
Bioinformatics
, vol.19
, pp. ii215-ii225
-
-
Stanke, M.1
Waack, S.2
-
57
-
-
0025183708
-
Basic local alignment search tool
-
Altschul, S.F., Gish, W., Miller, W., Myers, E.W. & Lipman, D.J. Basic local alignment search tool. J. Mol. Biol. 215, 403-410 (1990).
-
(1990)
J. Mol. Biol.
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
58
-
-
2442713832
-
GeneWise and genomewise
-
Birney, E., Clamp, M. & Durbin, R. GeneWise and genomewise. Genome Res. 14, 988-995 (2004).
-
(2004)
Genome Res.
, vol.14
, pp. 988-995
-
-
Birney, E.1
Clamp, M.2
Durbin, R.3
-
59
-
-
84876996918
-
TopHat2: Accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions
-
Kim, D. et al. TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions. Genome Biol. 14, R36 (2013).
-
(2013)
Genome Biol.
, vol.14
, pp. R36
-
-
Kim, D.1
-
60
-
-
84859885816
-
Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks
-
Trapnell, C. et al. Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks. Nat. Protoc. 7, 562-578 (2012).
-
(2012)
Nat. Protoc.
, vol.7
, pp. 562-578
-
-
Trapnell, C.1
-
61
-
-
42949086676
-
Automated eukaryotic gene structure annotation using EVidenceModeler and the Program to Assemble Spliced Alignments
-
Haas, B.J. et al. Automated eukaryotic gene structure annotation using EVidenceModeler and the Program to Assemble Spliced Alignments. Genome Biol. 9, R7 (2008).
-
(2008)
Genome Biol.
, vol.9
, pp. R7
-
-
Haas, B.J.1
-
62
-
-
84858077472
-
The Pfam protein families database
-
Punta, M. et al. The Pfam protein families database. Nucleic Acids Res. 40, D290-D301 (2012).
-
(2012)
Nucleic Acids Res.
, vol.40
, pp. D290-D301
-
-
Punta, M.1
-
63
-
-
23144458473
-
InterProScan: Protein domains identifier
-
Quevillon, E. et al. InterProScan: protein domains identifier. Nucleic Acids Res. 33, W116-W120 (2005).
-
(2005)
Nucleic Acids Res.
, vol.33
, pp. W116-W120
-
-
Quevillon, E.1
-
64
-
-
0034069495
-
Gene Ontology: Tool for the unification of biology
-
Ashburner, M. et al. Gene Ontology: tool for the unification of biology. Nat. Genet. 25, 25-29 (2000).
-
(2000)
Nat. Genet.
, vol.25
, pp. 25-29
-
-
Ashburner, M.1
-
65
-
-
0033982936
-
KEGG: Kyoto encyclopedia of genes and genomes
-
Kanehisa, M. & Goto, S. KEGG: kyoto encyclopedia of genes and genomes. Nucleic Acids Res. 28, 27-30 (2000).
-
(2000)
Nucleic Acids Res.
, vol.28
, pp. 27-30
-
-
Kanehisa, M.1
Goto, S.2
-
66
-
-
0141519279
-
OrthoMCL: Identification of ortholog groups for eukaryotic genomes
-
Li, L., Stoeckert, C.J. & Roos, D.S. OrthoMCL: identification of ortholog groups for eukaryotic genomes. Genome Res. 13, 2178-2189 (2003).
-
(2003)
Genome Res.
, vol.13
, pp. 2178-2189
-
-
Li, L.1
Stoeckert, C.J.2
Roos, D.S.3
-
67
-
-
0034201441
-
EMBOSS: The European molecular biology open software suite
-
Rice, P., Longden, I. & Bleasby, A. EMBOSS: the European molecular biology open software suite. Trends Genet. 16, 276-277 (2000).
-
(2000)
Trends Genet.
, vol.16
, pp. 276-277
-
-
Rice, P.1
Longden, I.2
Bleasby, A.3
-
68
-
-
0019887799
-
Identification of common molecular subsequences
-
Smith, T.F. & Waterman, M.S. Identification of common molecular subsequences. J. Mol. Biol. 147, 195-197 (1981).
-
(1981)
J. Mol. Biol.
, vol.147
, pp. 195-197
-
-
Smith, T.F.1
Waterman, M.S.2
-
69
-
-
77956534324
-
ANNOVAR: Functional annotation of genetic variants from high-throughput sequencing data
-
Wang, K., Li, M. & Hakonarson, H. ANNOVAR: functional annotation of genetic variants from high-throughput sequencing data. Nucleic Acids Res. 38, e164 (2010).
-
(2010)
Nucleic Acids Res.
, vol.38
, pp. e164
-
-
Wang, K.1
Li, M.2
Hakonarson, H.3
-
70
-
-
33847173733
-
FUNC: A package for detecting significant associations between gene sets and ontological annotations
-
Prüfer, K. et al. FUNC: a package for detecting significant associations between gene sets and ontological annotations. BMC Bioinformatics 8, 41 (2007).
-
(2007)
BMC Bioinformatics
, vol.8
, pp. 41
-
-
Prüfer, K.1
-
72
-
-
77649149766
-
SoyTEdb: A comprehensive database of transposable elements in the soybean genome
-
Du, J. et al. SoyTEdb: a comprehensive database of transposable elements in the soybean genome. BMC Genomics 11, 113 (2010).
-
(2010)
BMC Genomics
, vol.11
, pp. 113
-
-
Du, J.1
-
73
-
-
3042666256
-
MUSCLE: Multiple sequence alignment with high accuracy and high throughput
-
Edgar, R.C. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res. 32, 1792-1797 (2004).
-
(2004)
Nucleic Acids Res.
, vol.32
, pp. 1792-1797
-
-
Edgar, R.C.1
-
74
-
-
79957613599
-
MEGA5: Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods
-
Tamura, K. et al. MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol. Biol. Evol. 28, 2731-2739 (2011).
-
(2011)
Mol. Biol. Evol.
, vol.28
, pp. 2731-2739
-
-
Tamura, K.1
-
75
-
-
0030683599
-
PAML: A program package for phylogenetic analysis by maximum likelihood
-
Yang, Z. PAML: a program package for phylogenetic analysis by maximum likelihood. Comput. Appl. Biosci. 13, 555-556 (1997).
-
(1997)
Comput. Appl. Biosci.
, vol.13
, pp. 555-556
-
-
Yang, Z.1
-
76
-
-
79551599525
-
Mugsy: Fast multiple alignment of closely related whole genomes
-
Angiuoli, S.V. & Salzberg, S.L. Mugsy: fast multiple alignment of closely related whole genomes. Bioinformatics 27, 334-342 (2011).
-
(2011)
Bioinformatics
, vol.27
, pp. 334-342
-
-
Angiuoli, S.V.1
Salzberg, S.L.2
-
77
-
-
84864701726
-
Genome-wide mapping of NBS-LRR genes and their association with disease resistance in soybean
-
Kang, Y. et al. Genome-wide mapping of NBS-LRR genes and their association with disease resistance in soybean. BMC Plant Biol. 12, 139 (2012).
-
(2012)
BMC Plant Biol.
, vol.12
, pp. 139
-
-
Kang, Y.1
-
78
-
-
82255181391
-
RNA-Seq analysis of a soybean near-isogenic line carrying bacterial leaf pustule-resistant and-susceptible alleles
-
Kim, K.H. et al. RNA-Seq analysis of a soybean near-isogenic line carrying bacterial leaf pustule-resistant and-susceptible alleles. DNA Res. 18, 483-497 (2011).
-
(2011)
DNA Res.
, vol.18
, pp. 483-497
-
-
Kim, K.H.1
-
79
-
-
84867981440
-
The Rsv3 locus conferring resistance to soybean mosaic virus is associated with a cluster of coiled-coil nucleotide-binding leucine-rich repeat genes
-
Suh, S.J. et al. The Rsv3 locus conferring resistance to soybean mosaic virus is associated with a cluster of coiled-coil nucleotide-binding leucine-rich repeat genes. Plant Genome 4, 55-64 (2011).
-
(2011)
Plant Genome
, vol.4
, pp. 55-64
-
-
Suh, S.J.1
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