-
1
-
-
0034644643
-
Molecular analysis of FRIGIDA, a major determinant of natural variation in Arabidopsis flowering time
-
Johanson, U., et al. Molecular analysis of FRIGIDA, a major determinant of natural variation in Arabidopsis flowering time. Science 290, 344-347 (2000).
-
(2000)
Science
, vol.290
, pp. 344-347
-
-
Johanson, U.1
-
2
-
-
55549089660
-
Accurate whole human genome sequencing using reversible terminator chemistry
-
Bentley, D. R., et al. Accurate whole human genome sequencing using reversible terminator chemistry. Nature 456, 53-59 (2008).
-
(2008)
Nature
, vol.456
, pp. 53-59
-
-
Bentley, D.R.1
-
3
-
-
57149099394
-
Sequencing of natural strains of Arabidopsis thaliana with short reads
-
Ossowski, S., et al. Sequencing of natural strains of Arabidopsis thaliana with short reads. Genome Res. 18, 2024-2033 (2008).
-
(2008)
Genome Res.
, vol.18
, pp. 2024-2033
-
-
Ossowski, S.1
-
4
-
-
79959974750
-
Reference-guided assembly of four diverse Arabidopsis thaliana genomes
-
Schneeberger, K., et al. Reference-guided assembly of four diverse Arabidopsis thaliana genomes. Proc. Natl Acad. Sci. USA 108, 10249-10254 (2011).
-
(2011)
Proc. Natl Acad. Sci. USA
, vol.108
, pp. 10249-10254
-
-
Schneeberger, K.1
-
5
-
-
68249140383
-
The 1001 genomes project for Arabidopsis thaliana
-
doi:10.1186/gb-2009-10-5-107
-
Weigel, D. & Mott, R. The 1001 genomes project for Arabidopsis thaliana. Genome Biol. 10, 107, doi:10.1186/gb-2009-10-5-107 (2009).
-
(2009)
Genome Biol.
, vol.10
, pp. 107
-
-
Weigel, D.1
Mott, R.2
-
6
-
-
0034649566
-
Analysis of the genome sequence of the flowering plant Arabidopsis thaliana
-
The Arabidopsis Genome Initiative
-
The Arabidopsis Genome Initiative. Analysis of the genome sequence of the flowering plant Arabidopsis thaliana. Nature 408, 796-815 (2000).
-
(2000)
Nature
, vol.408
, pp. 796-815
-
-
-
7
-
-
34547108086
-
Common sequence polymorphisms shaping genetic diversity in Arabidopsis thaliana
-
DOI 10.1126/science.1138632
-
Clark, R. M., et al. Common sequence polymorphisms shaping genetic diversity in Arabidopsis thaliana. Science 317, 338-342 (2007). (Pubitemid 47106367)
-
(2007)
Science
, vol.317
, Issue.5836
, pp. 338-342
-
-
Clark, R.M.1
Schweikert, G.2
Toomajian, C.3
Ossowski, S.4
Zeller, G.5
Shinn, P.6
Warthmann, N.7
Hu, T.T.8
Fu, G.9
Hinds, D.A.10
Chen, H.11
Frazer, K.A.12
Huson, D.H.13
Scholkopf, B.14
Nordborg, M.15
Ratsch, G.16
Ecker, J.R.17
Weigel, D.18
-
8
-
-
44849134096
-
Detecting polymorphic regions in Arabidopsis thaliana with resequencing microarrays
-
DOI 10.1101/gr.070169.107
-
Zeller, G., et al. Detecting polymorphic regions in Arabidopsis thaliana with resequencing microarrays. Genome Res. 18, 918-929 (2008). (Pubitemid 351793064)
-
(2008)
Genome Research
, vol.18
, Issue.6
, pp. 918-929
-
-
Zeller, G.1
Clark, R.M.2
Schneeberger, K.3
Bohlen, A.4
Weigel, D.5
Ratsch, G.6
-
9
-
-
68249120152
-
A multiparent advanced generation inter-cross to fine-map quantitative traits in Arabidopsis thaliana
-
Kover, P. X., et al. A multiparent advanced generation inter-cross to fine-map quantitative traits in Arabidopsis thaliana. PLoS Genet. 5, e1000551 (2009).
-
(2009)
PLoS Genet.
, vol.5
-
-
Kover, P.X.1
-
10
-
-
77953233453
-
Genome-wide association study of 107 phenotypes in Arabidopsis thaliana inbred lines
-
Atwell, S., et al. Genome-wide association study of 107 phenotypes in Arabidopsis thaliana inbred lines. Nature 465, 627-631 (2010).
-
(2010)
Nature
, vol.465
, pp. 627-631
-
-
Atwell, S.1
-
11
-
-
68449094455
-
Genetic properties of the maize nested association mapping population
-
McMullen, M. D., et al. Genetic properties of the maize nested association mapping population. Science 325, 737-740 (2009).
-
(2009)
Science
, vol.325
, pp. 737-740
-
-
McMullen, M.D.1
-
12
-
-
80051556204
-
Collaborative crossmice and their power tomap host susceptibility to Aspergillus fumigatus infection
-
Durrant, C, et al. Collaborative crossmice and their power tomap host susceptibility to Aspergillus fumigatus infection. Genome Res. 21, 1239-1248 (2011).
-
(2011)
Genome Res.
, vol.21
, pp. 1239-1248
-
-
Durrant, C.1
-
13
-
-
80053384429
-
Whole-genome sequencing of multiple Arabidopsis thaliana populations
-
doi:10.1038/ng.911 (28 August 2011)
-
Cao, J., et al. Whole-genome sequencing of multiple Arabidopsis thaliana populations. Nature Genet. doi:10.1038/ng.911 (28 August 2011).
-
Nature Genet.
-
-
Cao, J.1
-
14
-
-
79956307251
-
Stampy: A statistical algorithm for sensitive and fast mapping of Illumina sequence reads
-
Lunter, G. & Goodson, M. Stampy: a statistical algorithm for sensitive and fast mapping of Illumina sequence reads. Genome Res. 21, 936-939 (2011).
-
(2011)
Genome Res.
, vol.21
, pp. 936-939
-
-
Lunter, G.1
Goodson, M.2
-
15
-
-
75649124547
-
De novo assembly of human genomes with massively parallel short read sequencing
-
Li, R., et al. De novo assembly of human genomes with massively parallel short read sequencing. Genome Res. 20, 265-272 (2010).
-
(2010)
Genome Res.
, vol.20
, pp. 265-272
-
-
Li, R.1
-
16
-
-
80052851950
-
Mouse genomic variation and its effect on phenotypes and gene regulation
-
doi:10.1038/nature10413 (in the press)
-
Keane, T. M., et al. Mouse genomic variation and its effect on phenotypes and gene regulation. Nature doi:10.1038/nature10413 (in the press).
-
Nature
-
-
Keane, T.M.1
-
17
-
-
70450204614
-
A first-generation haplotype map of maize
-
Gore, M. A., et al. A first-generation haplotype map of maize. Science 326, 1115-1117 (2009).
-
(2009)
Science
, vol.326
, pp. 1115-1117
-
-
Gore, M.A.1
-
18
-
-
84856400714
-
Positional information resolves structural variations and uncovers an evolutionarily divergent genetic locus in accessions of Arabidopsis thaliana
-
doi:10.1093/gbe/evr038 (27 May 2011)
-
Lai, A. G., Denton-Giles, M., Mueller-Roeber, B., Schippers, J. H. & Dijkwel, P. P. Positional information resolves structural variations and uncovers an evolutionarily divergent genetic locus in accessions of Arabidopsis thaliana. Genome Biol. Evol. advance online publication, doi:10.1093/gbe/evr038 (27 May 2011).
-
Genome Biol. Evol.
-
-
Lai, A.G.1
Denton-Giles, M.2
Mueller-Roeber, B.3
Schippers, J.H.4
Dijkwel, P.P.5
-
19
-
-
22744434580
-
The pattern of polymorphism in Arabidopsis thaliana
-
DOI 10.1371/journal.pbio.0030196, e196
-
Nordborg, M., et al. The pattern of polymorphism in Arabidopsis thaliana. PLoS Biol. 3, e196, doi:10.1371/journal.pbio.0030196 (2005). (Pubitemid 41032196)
-
(2005)
PLoS Biology
, vol.3
, Issue.7
, pp. 1289-1299
-
-
Nordborg, M.1
Hu, T.T.2
Ishino, Y.3
Jhaveri, J.4
Toomajian, C.5
Zheng, H.6
Bakker, E.7
Calabrese, P.8
Gladstone, J.9
Goyal, R.10
Jakobsson, M.11
Kim, S.12
Morozov, Y.13
Padhukasahasram, B.14
Plagnol, V.15
Rosenberg, N.A.16
Shah, C.17
Wall, J.D.18
Wang, J.19
Zhao, K.20
Kalbfleisch, T.21
Schulz, V.22
Kreitman, M.23
Bergelson, J.24
more..
-
20
-
-
15944363058
-
Constructing minimal ancestral recombination graphs
-
DOI 10.1089/cmb.2005.12.147
-
Song, Y. S. & Hein, J. Constructing minimal ancestral recombination graphs. J. Comput. Biol. 12, 147-169 (2005). (Pubitemid 40444585)
-
(2005)
Journal of Computational Biology
, vol.12
, Issue.2
, pp. 147-169
-
-
Song, Y.S.1
Hein, J.2
-
21
-
-
79952360093
-
-
Ch. 11, Unit 11.6 (Wiley)
-
Jean, G., Kahles, A., Sreedharan, V. T., De Bona, F.&Ratsch, G. in Current Protocols in Bioinformatics Ch. 11, Unit 11.6 (Wiley, 2010).
-
(2010)
Current Protocols in Bioinformatics
-
-
Jean, G.1
Kahles, A.2
Sreedharan, V.T.3
De Bona, F.4
Ratsch, G.5
-
22
-
-
70350708134
-
MGene: Accurate SVM-based gene finding with an application to nematode genomes
-
Schweikert, G., et al.mGene: accurate SVM-based gene finding with an application to nematode genomes. Genome Res. 19, 2133-2143 (2009).
-
(2009)
Genome Res.
, vol.19
, pp. 2133-2143
-
-
Schweikert, G.1
-
23
-
-
77952123055
-
Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation
-
Trapnell, C., et al. Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation. Nature Biotechnol. 28, 511-515 (2010).
-
(2010)
Nature Biotechnol.
, vol.28
, pp. 511-515
-
-
Trapnell, C.1
-
24
-
-
79955468851
-
The Arabidopsis lyrata genome sequence and the basis of rapid genome size change
-
Hu, T. T., et al. The Arabidopsis lyrata genome sequence and the basis of rapid genome size change. Nature Genet. 43, 476-481 (2011).
-
(2011)
Nature Genet.
, vol.43
, pp. 476-481
-
-
Hu, T.T.1
-
25
-
-
26944500600
-
Genome organization of more than 300 defensin-like genes in Arabidopsis
-
DOI 10.1104/pp.105.060079
-
Silverstein, K. A., Graham, M. A., Paape, T. D. & VandenBosch, K. A. Genome organization of more than 300 defensin-like genes in Arabidopsis. Plant Physiol. 138, 600-610 (2005). (Pubitemid 43793143)
-
(2005)
Plant Physiology
, vol.138
, Issue.2
, pp. 600-610
-
-
Silverstein, K.A.T.1
Graham, M.A.2
Paape, T.D.3
Vandenbosch, K.A.4
-
26
-
-
0037143725
-
The F-box subunit of the SCF E3 complex is encoded by a diverse superfamily of genes in Arabidopsis
-
DOI 10.1073/pnas.162339999
-
Gagne, J. M., Downes, B. P., Shiu, S. H., Durski, A. M. & Vierstra, R. D. The F-box subunit of the SCF E3 complex is encoded by a diverse superfamily of genes in Arabidopsis. Proc. Natl Acad. Sci. USA 99, 11519-11524 (2002). (Pubitemid 34920956)
-
(2002)
Proceedings of the National Academy of Sciences of the United States of America
, vol.99
, Issue.17
, pp. 11519-11524
-
-
Gagne, J.M.1
Downes, B.P.2
Shiu, S.-H.3
Durski, A.M.4
Vierstra, R.D.5
-
27
-
-
77958471357
-
Differential expression analysis for sequence count data
-
doi:10.1186/gb-2010-11-10-r106
-
Anders, S. & Huber, W. Differential expression analysis for sequence count data. Genome Biol. 11, R106, doi:10.1186/gb-2010-11-10-r106 (2010).
-
(2010)
Genome Biol.
, vol.11
-
-
Anders, S.1
Huber, W.2
-
28
-
-
33846818896
-
Regulatory network construction in Arabidopsis by using genome-wide gene expression quantitative trait loci
-
DOI 10.1073/pnas.0610429104
-
Keurentjes, J. J., et al. Regulatory network construction in Arabidopsis by using genome-wide gene expression quantitative trait loci. Proc. Natl Acad. Sci. USA 104, 1708-1713 (2007). (Pubitemid 46214655)
-
(2007)
Proceedings of the National Academy of Sciences of the United States of America
, vol.104
, Issue.5
, pp. 1708-1713
-
-
Keurentjes, J.J.B.1
Fu, J.2
Terpstra, I.R.3
Garcia, J.M.4
Van Den Ackerveken, G.5
Snoek, L.B.6
Peeters, A.J.M.7
Vreugdenhil, D.8
Koornneef, M.9
Jansen, R.C.10
-
29
-
-
60749088955
-
Comprehensive analysis of Arabidopsis expression level polymorphisms with simple inheritance
-
doi:10.1038/ msb.2008.79
-
Plantegenet, S., et al. Comprehensive analysis of Arabidopsis expression level polymorphisms with simple inheritance. Mol. Syst. Biol. 5, 242, doi:10.1038/ msb.2008.79 (2009).
-
(2009)
Mol. Syst. Biol.
, vol.5
, pp. 242
-
-
Plantegenet, S.1
-
30
-
-
34249055193
-
Global eQTL mapping reveals the complex genetic architecture of transcript-level variation in Arabidopsis
-
DOI 10.1534/genetics.106.064972
-
West, M. A., et al. Global eQTL mapping reveals the complex genetic architecture of transcript-level variation in Arabidopsis. Genetics 175, 1441-1450 (2007). (Pubitemid 46798243)
-
(2007)
Genetics
, vol.175
, Issue.3
, pp. 1441-1450
-
-
West, M.A.L.1
Kim, K.2
Kliebenstein, D.J.3
Van Leeuwen, H.4
Michelmore, R.W.5
Doerge, R.W.6
St. Clair, D.A.7
-
31
-
-
79955556526
-
Genetic architecture of regulatory variation in Arabidopsis thaliana
-
Zhang, X., Cal, A. J. & Borevitz, J. O. Genetic architecture of regulatory variation in Arabidopsis thaliana. Genome Res. 21, 725-733 (2011).
-
(2011)
Genome Res.
, vol.21
, pp. 725-733
-
-
Zhang, X.1
Cal, A.J.2
Borevitz, J.O.3
-
32
-
-
44449179468
-
Plant immunity to insect herbivores
-
DOI 10.1146/annurev.arplant.59.032607.092825
-
Howe, G. A. & Jander, G. Plant immunity to insect herbivores. Annu. Rev. Plant Biol. 59, 41-66 (2008). (Pubitemid 351813023)
-
(2008)
Annual Review of Plant Biology
, vol.59
, pp. 41-66
-
-
Howe, G.A.1
Jander, G.2
-
33
-
-
15544370965
-
MIKC-type MADS-domain proteins: Structural modularity, protein interactions and network evolution in land plants
-
DOI 10.1016/j.gene.2004.12.014
-
Kaufmann, K., Melzer, R. & Theissen, G. MIKC-type MADS-domain proteins: structural modularity, protein interactions and network evolution in land plants. Gene 347, 183-198 (2005). (Pubitemid 40403758)
-
(2005)
Gene
, vol.347
, Issue.2 SPEC. ISS.
, pp. 183-198
-
-
Kaufmann, K.1
Melzer, R.2
Theissen, G.3
-
34
-
-
0033101487
-
The FLFMADSbox gene: A repressor of flowering in Arabidopsis regulated by vernalization and methylation
-
Sheldon, C. C., et al. The FLFMADSbox gene: a repressor of flowering in Arabidopsis regulated by vernalization and methylation. Plant Cell 11, 445-458 (1999).
-
(1999)
Plant Cell
, vol.11
, pp. 445-458
-
-
Sheldon, C.C.1
-
35
-
-
0038705142
-
Analysis of the Arabidopsis MADS AFFECTING FLOWERING gene family: MAF2 prevents vernalization by short periods of cold
-
DOI 10.1105/tpc.009506
-
Ratcliffe, O. J., Kumimoto, R. W., Wong, B. J. & Riechmann, J. L. Analysis of the Arabidopsis MADS AFFECTING FLOWERING gene family: MAF2 prevents vernalization by short periods of cold. Plant Cell 15, 1159-1169 (2003). (Pubitemid 36579975)
-
(2003)
Plant Cell
, vol.15
, Issue.5
, pp. 1159-1169
-
-
Ratcliffe, O.J.1
Kumimoto, R.W.2
Wong, B.J.3
Riechmann, J.L.4
-
36
-
-
77955610825
-
Diversity of flowering responses in wild Arabidopsis thaliana strains
-
Lempe, J., et al. Diversity of flowering responses in wild Arabidopsis thaliana strains. PLoS Genet. 1, 109-118 (2005).
-
(2005)
PLoS Genet.
, vol.1
, pp. 109-118
-
-
Lempe, J.1
-
37
-
-
16244362244
-
A gene expression map of Arabidopsis thaliana development
-
DOI 10.1038/ng1543
-
Schmid, M., et al. A gene expression map of Arabidopsis thaliana development. Nature Genet. 37, 501-506 (2005). (Pubitemid 40617278)
-
(2005)
Nature Genetics
, vol.37
, Issue.5
, pp. 501-506
-
-
Schmid, M.1
Davison, T.S.2
Henz, S.R.3
Pape, U.J.4
Demar, M.5
Vingron, M.6
Scholkopf, B.7
Weigel, D.8
Lohmann, J.U.9
|