-
1
-
-
84962816416
-
New insights on Chilling and Heat Requirement genetic determinisms in apple and putative candidate genes through a multi-family QTL discovery
-
press
-
Allard, A., Legave, J.M., Martinez, S., Kelner, J.J., Bink, M.C.A.M., Di Guardo, M., Di Pierro, E.A., Laurens, F., Van de Weg, W.E., and, Costes, E., (2016) New insights on Chilling and Heat Requirement genetic determinisms in apple and putative candidate genes through a multi-family QTL discovery. J. Exp. Bot. In press.
-
(2016)
J. Exp. Bot.
-
-
Allard, A.1
Legave, J.M.2
Martinez, S.3
Kelner, J.J.4
Bink, M.C.A.M.5
Di Guardo, M.6
Di Pierro, E.A.7
Laurens, F.8
Van De Weg, W.E.9
Costes, E.10
-
2
-
-
84861363013
-
Development of a dense SNP-based linkage map of an apple rootstock progeny using the Malus Infinium whole genome genotyping array
-
Antanaviciute, L., Fernandez-Fernandez, F., Jansen, J., Banchi, E., Evans, K.M., Viola, R., Velasco, R., Dunwell, J.M., Troggio, M., and, Sargent, D.J., (2012) Development of a dense SNP-based linkage map of an apple rootstock progeny using the Malus Infinium whole genome genotyping array. BMC Genom. 13, 203.
-
(2012)
BMC Genom.
, vol.13
, pp. 203
-
-
Antanaviciute, L.1
Fernandez-Fernandez, F.2
Jansen, J.3
Banchi, E.4
Evans, K.M.5
Viola, R.6
Velasco, R.7
Dunwell, J.M.8
Troggio, M.9
Sargent, D.J.10
-
3
-
-
84925400229
-
® SNP array for the allo-octoploid cultivated strawberry Fragaria × ananassa
-
® SNP array for the allo-octoploid cultivated strawberry Fragaria × ananassa. BMC Genom. 16, 155.
-
(2015)
BMC Genom.
, vol.16
, pp. 155
-
-
Bassil, N.V.1
Davis, T.M.2
Zhang, H.3
-
4
-
-
84907815005
-
Development and validation of a 20K single nucleotide polymorphism (SNP) whole genome genotyping array for apple (Malus × domestica Borkh)
-
Bianco, L., Cestaro, A., Sargent, D.J., et al. (2014) Development and validation of a 20K single nucleotide polymorphism (SNP) whole genome genotyping array for apple (Malus × domestica Borkh). PLoS ONE, 9, e110377.
-
(2014)
PLoS ONE
, vol.9
, pp. e110377
-
-
Bianco, L.1
Cestaro, A.2
Sargent, D.J.3
-
5
-
-
84901585239
-
Widespread anti-sense transcription in apple is correlated with siRNA production and indicates a large potential for transcriptional and/or post-transcriptional control
-
Celton, J.M., Gaillard, S., Bruneau, M., Pelletier, S., Aubourg, S., Martin-Magniette, M.L., Navarro, L., Laurens, F., and, Renou, J.P., (2014) Widespread anti-sense transcription in apple is correlated with siRNA production and indicates a large potential for transcriptional and/or post-transcriptional control. New Phytol. 203, 287-299.
-
(2014)
New Phytol.
, vol.203
, pp. 287-299
-
-
Celton, J.M.1
Gaillard, S.2
Bruneau, M.3
Pelletier, S.4
Aubourg, S.5
Martin-Magniette, M.L.6
Navarro, L.7
Laurens, F.8
Renou, J.P.9
-
6
-
-
84857433347
-
Genome-wide SNP detection, validation, and development of an 8K SNP array for apple
-
Chagné, D., Crowhurst, R.N., Troggio, M., et al. (2012) Genome-wide SNP detection, validation, and development of an 8K SNP array for apple. PLoS ONE, 7, e31745.
-
(2012)
PLoS ONE
, vol.7
, pp. e31745
-
-
Chagné, D.1
Crowhurst, R.N.2
Troggio, M.3
-
7
-
-
70349866672
-
Genomics. Genome project standards in a new era of sequencing
-
Chain, P.S., Grafham, D.V., Fulton, R.S., et al. (2009) Genomics. Genome project standards in a new era of sequencing. Science, 326, 236-237.
-
(2009)
Science
, vol.326
, pp. 236-237
-
-
Chain, P.S.1
Grafham, D.V.2
Fulton, R.S.3
-
8
-
-
84898720249
-
A high-density SNP genotyping array for rice biology and molecular breeding
-
Chen, H., Xie, W., He, H., et al. (2014) A high-density SNP genotyping array for rice biology and molecular breeding. Mol. Plant. 7, 541-553.
-
(2014)
Mol. Plant.
, vol.7
, pp. 541-553
-
-
Chen, H.1
Xie, W.2
He, H.3
-
9
-
-
84901421915
-
A consensus'Honeycrisp' apple (Malus × domestica) genetic linkage map from three full-sib progeny populations
-
Clark, M.D., Schmitz, C.A., Rosyara, U.R., Luby, J.J., and, Bradeen, J.M., (2014) A consensus'Honeycrisp' apple (Malus × domestica) genetic linkage map from three full-sib progeny populations. Tree Genet. Genomes, 10, 627-639.
-
(2014)
Tree Genet. Genomes
, vol.10
, pp. 627-639
-
-
Clark, M.D.1
Schmitz, C.A.2
Rosyara, U.R.3
Luby, J.J.4
Bradeen, J.M.5
-
10
-
-
84856528872
-
Association genetics of the loblolly pine (Pinus taeda, Pinaceae) metabolome
-
Eckert, A.J., Wegrzyn, J.L., Cumbie, W.P., Goldfarb, B., Huber, D.A., Tolstikov, V., Fiehn, O., and, Neale, D.B., (2012) Association genetics of the loblolly pine (Pinus taeda, Pinaceae) metabolome. New Phytol. 193, 890-902.
-
(2012)
New Phytol.
, vol.193
, pp. 890-902
-
-
Eckert, A.J.1
Wegrzyn, J.L.2
Cumbie, W.P.3
Goldfarb, B.4
Huber, D.A.5
Tolstikov, V.6
Fiehn, O.7
Neale, D.B.8
-
11
-
-
84922055577
-
Population genomics of Populus trichocarpa identifies signatures of selection and adaptive trait associations
-
Evans, L.M., Slavov, G.T., Rodgers-Melnick, E., et al. (2014) Population genomics of Populus trichocarpa identifies signatures of selection and adaptive trait associations. Nat. Genet. 46, 1089-1096.
-
(2014)
Nat. Genet.
, vol.46
, pp. 1089-1096
-
-
Evans, L.M.1
Slavov, G.T.2
Rodgers-Melnick, E.3
-
12
-
-
84931086162
-
A major QTL controlling apple skin russeting maps on the linkage group 12 of 'Renetta Grigia di Torriana'
-
Falginella, L., Cipriani, G., Monte, C., Gregori, R., Testolin, R., Velasco, R., Troggio, M., and, Tartarini, S., (2015) A major QTL controlling apple skin russeting maps on the linkage group 12 of 'Renetta Grigia di Torriana'. BMC Plant Biol. 15, 150.
-
(2015)
BMC Plant Biol.
, vol.15
, pp. 150
-
-
Falginella, L.1
Cipriani, G.2
Monte, C.3
Gregori, R.4
Testolin, R.5
Velasco, R.6
Troggio, M.7
Tartarini, S.8
-
13
-
-
84924867936
-
High-throughput SNP profiling of genetic resources in crop plants using genotyping arrays
-
(Tuberosa, R. Graner, A. and Frison, E. eds). Dordrecht, Netherlands: Springer
-
Ganal, M.W., Wieseke, R., Luerssen, H., Durstewitz, G., Graner, E-M., Plieske, J., and, Polley, A., (2014) High-throughput SNP profiling of genetic resources in crop plants using genotyping arrays. In Genomics of Plant Genetic Resources Volume 1. Managing, Sequencing and Mining Genetic Resources (, Tuberosa, R., Graner, A., and, Frison, E., eds). Dordrecht, Netherlands: Springer, pp. 113-130.
-
(2014)
Genomics of Plant Genetic Resources Volume 1. Managing, Sequencing and Mining Genetic Resources
, pp. 113-130
-
-
Ganal, M.W.1
Wieseke, R.2
Luerssen, H.3
Durstewitz, G.4
Graner, E.-M.5
Plieske, J.6
Polley, A.7
-
14
-
-
84907916544
-
-
Gardner, K.M., Brown, P., Cooke, T.F., Cann, S., Costa, F., Bustamante, C., Velasco, R., Troggio, M., and, Myles, S., (2014) Fast and cost-effective genetic mapping in apple using next-generation sequencing. G3, 4, 1681-1687.
-
(2014)
Fast and cost-effective genetic mapping in apple using next-generation sequencing G3
, vol.4
, pp. 1681-1687
-
-
Gardner, K.M.1
Brown, P.2
Cooke, T.F.3
Cann, S.4
Costa, F.5
Bustamante, C.6
Velasco, R.7
Troggio, M.8
Myles, S.9
-
15
-
-
0028136089
-
Genetic linkage maps of Eucalyptus grandis and Eucalyptus urophylla using a pseudo-testcross: Mapping strategy and RAPD markers
-
Grattapaglia, D., and, Sederoff, R., (1994) Genetic linkage maps of Eucalyptus grandis and Eucalyptus urophylla using a pseudo-testcross: mapping strategy and RAPD markers. Genetics, 137, 1121-1137.
-
(1994)
Genetics
, vol.137
, pp. 1121-1137
-
-
Grattapaglia, D.1
Sederoff, R.2
-
16
-
-
84907979189
-
Genetic diversity in Malus × domestica (Rosaceae) through time in response to domestication
-
Gross, B.L., Henk, A.D., Richards, C.M., Fazio, G., and, Volk, G.M., (2014) Genetic diversity in Malus × domestica (Rosaceae) through time in response to domestication. Am. J. Bot. 101, 1770-1779.
-
(2014)
Am. J. Bot.
, vol.101
, pp. 1770-1779
-
-
Gross, B.L.1
Henk, A.D.2
Richards, C.M.3
Fazio, G.4
Volk, G.M.5
-
17
-
-
84930683425
-
QTLs detected for individual sugars and soluble solids content in apple
-
Guan, Y., Peace, C., Rudell, D., Verma, S., and, Evans, K., (2015) QTLs detected for individual sugars and soluble solids content in apple. Mol. Breed. 35, 135.
-
(2015)
Mol. Breed.
, vol.35
, pp. 135
-
-
Guan, Y.1
Peace, C.2
Rudell, D.3
Verma, S.4
Evans, K.5
-
18
-
-
84931304337
-
Array-based high-throughput DNA markers and genotyping platforms for cereal genetics and genomics
-
(Gupta, P. K. and Varshney, R.K. eds). Dordrecht, Netherlands: Springer
-
Gupta, P.K., Rustgi, S., and, Mir, R.R., (2013) Array-based high-throughput DNA markers and genotyping platforms for cereal genetics and genomics. In Cereal Genomic II (, Gupta, P. K., and, Varshney, R.K., eds). Dordrecht, Netherlands: Springer, pp. 11-55.
-
(2013)
Cereal Genomic II
, pp. 11-55
-
-
Gupta, P.K.1
Rustgi, S.2
Mir, R.R.3
-
19
-
-
70450177746
-
BFAST: An alignment tool for large scale genome resequencing
-
Homer, N., Merriman, B., and, Nelson, S.F., (2009) BFAST: an alignment tool for large scale genome resequencing. PLoS ONE, 4, e7767.
-
(2009)
PLoS ONE
, vol.4
, pp. e7767
-
-
Homer, N.1
Merriman, B.2
Nelson, S.F.3
-
20
-
-
84930847935
-
-
Hulse-Kemp, A.M, Lemm, J., Plieske, J., et al. (2015) Development of a 63K SNP array for cotton and high-density mapping of intraspecific and interspecific populations of Gossypium spp. G3, 5, 1187-1209.
-
(2015)
Development of a 63K SNP array for cotton and high-density mapping of intraspecific and interspecific populations of Gossypium spp G3
, vol.5
, pp. 1187-1209
-
-
Hulse-Kemp, A.M.1
Lemm, J.2
Plieske, J.3
-
22
-
-
84862785775
-
A high-throughput apple SNP genotyping platform using the GoldenGate (TM) assay
-
Khan, M.A., Han, Y., Zhao, Y.F., and, Korban, S.S., (2012) A high-throughput apple SNP genotyping platform using the GoldenGate (TM) assay. Gene, 494, 196-201.
-
(2012)
Gene
, vol.494
, pp. 196-201
-
-
Khan, M.A.1
Han, Y.2
Zhao, Y.F.3
Korban, S.S.4
-
23
-
-
84928123257
-
Using RNA-Seq to assemble a rose transcriptome with more than 13,000 full-length expressed genes and to develop the WagRhSNP 68k Axiom SNP array for rose (Rosa L.)
-
Koning-Boucoiran, C.F.S., Esselink, G.D., Vukosavljev, M., et al. (2015) Using RNA-Seq to assemble a rose transcriptome with more than 13,000 full-length expressed genes and to develop the WagRhSNP 68k Axiom SNP array for rose (Rosa L.). Front. Plant Sci. 6, 249.
-
(2015)
Front. Plant Sci.
, vol.6
, pp. 249
-
-
Koning-Boucoiran, C.F.S.1
Esselink, G.D.2
Vukosavljev, M.3
-
24
-
-
84856215647
-
Towards genomic selection in apple (Malus × domestica Borkh.) breeding programmes: Prospects, challenges and strategies
-
Kumar, S., Bink, M.C.A.M., Volz, R.K., Bus, V.G.M., and, Chagné, D., (2012) Towards genomic selection in apple (Malus × domestica Borkh.) breeding programmes: prospects, challenges and strategies. Tree Genet. Genomes, 8, 1-14.
-
(2012)
Tree Genet. Genomes
, vol.8
, pp. 1-14
-
-
Kumar, S.1
Bink, M.C.A.M.2
Volz, R.K.3
Bus, V.G.M.4
Chagné, D.5
-
25
-
-
84878814495
-
Novel genomic approaches unravel genetic architecture of complex traits in apple
-
Kumar, S., Garrick, D.J., Bink, M.C.A.M., Whitworth, C., Chagné, D., and, Volz, R.K., (2013) Novel genomic approaches unravel genetic architecture of complex traits in apple. BMC Genom. 14, 393.
-
(2013)
BMC Genom.
, vol.14
, pp. 393
-
-
Kumar, S.1
Garrick, D.J.2
Bink, M.C.A.M.3
Whitworth, C.4
Chagné, D.5
Volz, R.K.6
-
26
-
-
84908894269
-
Molecular-level and trait-level differentiation between the cultivated apple (Malus × domestica Borkh.) and its main progenitor Malus sieversii
-
Kumar, S., Raulier, P., Chagné, D., and, Whitworth, C., (2014) Molecular-level and trait-level differentiation between the cultivated apple (Malus × domestica Borkh.) and its main progenitor Malus sieversii. Plant Genet. Res. 12, 330-340.
-
(2014)
Plant Genet. Res.
, vol.12
, pp. 330-340
-
-
Kumar, S.1
Raulier, P.2
Chagné, D.3
Whitworth, C.4
-
27
-
-
84863622836
-
Review of fruit genetics and breeding programmes and a new European initiative to increase fruit breeding efficiency
-
Laurens, F., Aranzana, M.J., Arus, P., et al. (2012) Review of fruit genetics and breeding programmes and a new European initiative to increase fruit breeding efficiency. Acta Hort. 929, 95-102.
-
(2012)
Acta Hort.
, vol.929
, pp. 95-102
-
-
Laurens, F.1
Aranzana, M.J.2
Arus, P.3
-
28
-
-
84922624423
-
Development, validation and genetic analysis of a large soybean SNP genotyping array
-
Lee, Y.-G., Jeong, N., Kim, J.H., et al. (2015) Development, validation and genetic analysis of a large soybean SNP genotyping array. Plant J. 81, 625-636.
-
(2015)
Plant J.
, vol.81
, pp. 625-636
-
-
Lee, Y.-G.1
Jeong, N.2
Kim, J.H.3
-
29
-
-
84937023156
-
Genomic basis of the differences between cider and dessert apple varieties
-
Leforestier, D., Ravon, E., Muranty, H., Cornille, A., Lemaire, C., Giraud, T., Durel, C.-E., and, Branca, A., (2015) Genomic basis of the differences between cider and dessert apple varieties. Evol. Appl. 8, 650-661.
-
(2015)
Evol. Appl.
, vol.8
, pp. 650-661
-
-
Leforestier, D.1
Ravon, E.2
Muranty, H.3
Cornille, A.4
Lemaire, C.5
Giraud, T.6
Durel, C.-E.7
Branca, A.8
-
30
-
-
68549104404
-
The sequence alignment/map format and SAMtools
-
1000 Genome Project Data Processing Subgroup
-
Li, H., Handsaker, B., Wysoker, A., Fennell, T., Ruan, J., Homer, N., Marth, G., Abecasis, G., and, Durbin, R.,; 1000 Genome Project Data Processing Subgroup. (2009) The sequence alignment/map format and SAMtools. Bioinformatics, 25, 2078-2079.
-
(2009)
Bioinformatics
, vol.25
, pp. 2078-2079
-
-
Li, H.1
Handsaker, B.2
Wysoker, A.3
Fennell, T.4
Ruan, J.5
Homer, N.6
Marth, G.7
Abecasis, G.8
Durbin, R.9
-
31
-
-
84925442798
-
Genome wide analysis of flowering time trait in multiple environments via high-throughput genotyping technique in Brassica napus L
-
Li, L., Long, Y., Zhang, L., Dalton-Morgan, J., Batley, J., Yu, L., Meng, J., and, Li, M., (2015) Genome wide analysis of flowering time trait in multiple environments via high-throughput genotyping technique in Brassica napus L. PLoS ONE, 10, e0119425.
-
(2015)
PLoS ONE
, vol.10
, pp. e0119425
-
-
Li, L.1
Long, Y.2
Zhang, L.3
Dalton-Morgan, J.4
Batley, J.5
Yu, L.6
Meng, J.7
Li, M.8
-
32
-
-
79960589122
-
Genetic diversity of the genus Malus and implications for linkage mapping with SNPs
-
Micheletti, D., Troggio, M., Zharkikh, A., Costa, F., Malnoy, M., Velasco, R., and, Salvi, S., (2011) Genetic diversity of the genus Malus and implications for linkage mapping with SNPs. Tree Genet. Genomes, 7, 857-868.
-
(2011)
Tree Genet. Genomes
, vol.7
, pp. 857-868
-
-
Micheletti, D.1
Troggio, M.2
Zharkikh, A.3
Costa, F.4
Malnoy, M.5
Velasco, R.6
Salvi, S.7
-
33
-
-
84928969287
-
Sequence- vs. Chip-assisted genomic selection: Accurate biological information is advised
-
Perez-Enciso, M., Rincon, J.C., and, Legarra, A., (2015) Sequence- vs. chip-assisted genomic selection: accurate biological information is advised. Genet. Sel. Evol. 47, 43.
-
(2015)
Genet. Sel. Evol.
, vol.47
, pp. 43
-
-
Perez-Enciso, M.1
Rincon, J.C.2
Legarra, A.3
-
35
-
-
34548292504
-
PLINK: A tool set for whole-genome association and population-based linkage analyses
-
Purcell, S., Neale, B., Todd-Brown, K., et al. (2007) PLINK: a tool set for whole-genome association and population-based linkage analyses. Am. J. Hum. Genet. 81, 559-575.
-
(2007)
Am. J. Hum. Genet.
, vol.81
, pp. 559-575
-
-
Purcell, S.1
Neale, B.2
Todd-Brown, K.3
-
36
-
-
34547425321
-
Estimating genotyping error rates from Mendelian errors in SNP array genotypes and their impact on inference
-
Saunders, I.W., Brohede, J., and, Hannan, G.N., (2007) Estimating genotyping error rates from Mendelian errors in SNP array genotypes and their impact on inference. Genomics, 90, 291-296.
-
(2007)
Genomics
, vol.90
, pp. 291-296
-
-
Saunders, I.W.1
Brohede, J.2
Hannan, G.N.3
-
37
-
-
10044235010
-
Tag SNP selection for association studies
-
Stram, D.O., (2004) Tag SNP selection for association studies. Genet. Epidemiol. 27, 365-374.
-
(2004)
Genet. Epidemiol.
, vol.27
, pp. 365-374
-
-
Stram, D.O.1
-
38
-
-
84908001372
-
A powerful tool for genome analysis in maize: Development and evaluation of the high density 600 k SNP genotyping array
-
Unterseer, S., Bauer, E., Haberer, G., et al. (2014) A powerful tool for genome analysis in maize: development and evaluation of the high density 600 k SNP genotyping array. BMC Genom. 15, 823.
-
(2014)
BMC Genom.
, vol.15
, pp. 823
-
-
Unterseer, S.1
Bauer, E.2
Haberer, G.3
-
40
-
-
80054890337
-
Multipoint maximum likelihood mapping in a full-sib family of an outbreeding species
-
Van Ooijen, J.W., (2011) Multipoint maximum likelihood mapping in a full-sib family of an outbreeding species. Genet. Res. 93, 343-349.
-
(2011)
Genet. Res.
, vol.93
, pp. 343-349
-
-
Van Ooijen, J.W.1
-
41
-
-
77957560949
-
The genome of the domesticated apple (Malus × domestica Borkh.)
-
Velasco, R., Zharkikh, A., Affourtit, J., et al. (2010) The genome of the domesticated apple (Malus × domestica Borkh.). Nat. Genet. 42, 833-839.
-
(2010)
Nat. Genet.
, vol.42
, pp. 833-839
-
-
Velasco, R.1
Zharkikh, A.2
Affourtit, J.3
|